Citrus Sinensis ID: 008555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
MMNNNNTPMKNTGTLTGSQSMAMNSQSHLLSQTQGQTRDGSHFPGHFHLSEPHAHALAQAQYAHAHAQAQAHAAHAQFQAHVQSQGHSQSQSQSQSQSQSQSQSQSHPQLQTPNAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRKSAGSDAAGST
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccEEEEEEEEccccccccHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHccccccHHHHHHHHHcccccccccEEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHHHHcccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccHHHHHcEEEEEccccccccccEEEEEccccccccccEEEEccccccEEEEEEEEEccccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEcccHHHHHHHcccccccHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEEEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHccHHccccccc
mmnnnntpmkntgtltgsqsmamnsqshllsqtqgqtrdgshfpghfhlsephAHALAQAQYAHAHAQAQAHAAHAQFQAHvqsqghsqsqsqsqsqsqsqsqsqshpqlqtpnaggnvgvsspavstpgtggsakratqkppsrppgsssntnsgslfktteltpaarrkkrklpekqipdKVAAILPECALYTQLLEFEARVDSALARKKIDiqeslknpprvQKTLRMYVFNTfanqdetspekktgeapcwSLKLIGRIledgqdpvlaglmqksdtlypkFSSFFKKITIYldqslypdnhVILWEsarspalhegfevkrkgdkEFTAIIRIEMNyfpeksklspSLMELLgievdtrpRIIAAIWHYVKVKklqspndpssfmcdpplqkafgeekiKFATISQKIsqhlippppihlehkiklsgnspagtscydmlvdvpfpLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAfflgfsqspGEFINALIASQSKDLKLVagdasrnaekerrsdffnqpwvEDAVIRYMNrksagsdaagst
mmnnnntpmkntGTLTGSQSMAMNSQSHLLSQTQGQTRDGSHFPGHFHLSEPHAHALAQAQYAHAHAQAQAHAAHAQFQAHVQSQGHSQSQSQSQSQSQSQSQSQSHPQLQTPNAGGNVGVSSPAVstpgtggsakratqkppsrppgsssntnsgslfktteltpaarrkkrklpekqipdkVAAILPECALYTQLLEFEARVDSALArkkidiqeslknpprvqkTLRMYVFNTfanqdetspekktgeapCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLYPDNHVILWESArspalhegfevkrkgdkeFTAIIRIEMNyfpeksklsPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASrnaekerrsdffnqpwvedAVIRYMNRksagsdaagst
mmnnnntpmkntgtLTGSQSMAMNSQSHLLSQTQGQTRDGSHFPGHFHLSEPhahalaqaqyahahaqaqahaahaqfqahvqsqghsqsqsqsqsqsqsqsqsqsHPQLQTPNAGGNVGVSSPAVSTPGTGGSAKRATQKppsrppgsssntnsgsLFKTTELTPAARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQhlippppihlEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRKSAGSDAAGST
**************************************************************************************************************************************************************************************KVAAILPECALYTQLLEFEARVDSALARKKIDI*********VQKTLRMYVFNTFA*************APCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKL******************FGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSG**PAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIAS***********************FFNQPWVEDAVIRYM*************
*************************************************************************************************************************************************************************************DKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKN***VQKTLRMYVFNTF*****************WSLKLIGRILE*********************************************************************IIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLV*********KERRSDFFNQPWVEDAVIRYM*************
********MKNTGTLTGS*********************GSHFPGHFHLSEPHAHALA*************************************************************GVSS*******************************SGSLFKTTELTP**********EKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTFANQD**********APCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLV*************SDFFNQPWVEDAVIRYMNR***********
***********************************************HLSEPHAHALAQAQYAHAHAQA********************************************************************************************************KLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTFANQDETS**KKTGEAPCWSLKLIGRILED*****************PKFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRKS*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MMNNNNTPMKNTGTLTGSQSMAMNSQSHLLSQTQGQTRDGSHFPGHFHLSEPHAHALAQAQYAHAHAQAQAHAAHAQFQAHVQSQGHSQSQSQSQSQSQSQSQSQSHPQLQTPNAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRKSAGSDAAGST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query561 2.2.26 [Sep-21-2011]
Q9FMT4534 SWI/SNF complex component yes no 0.796 0.837 0.695 0.0
Q61466515 SWI/SNF-related matrix-as yes no 0.754 0.821 0.358 1e-75
Q96GM5515 SWI/SNF-related matrix-as yes no 0.754 0.821 0.358 2e-75
Q2TBN1515 SWI/SNF-related matrix-as yes no 0.754 0.821 0.363 3e-75
Q6P9Z1483 SWI/SNF-related matrix-as no no 0.734 0.853 0.368 2e-71
Q6STE5483 SWI/SNF-related matrix-as no no 0.734 0.853 0.368 2e-71
O54772531 SWI/SNF-related matrix-as no no 0.764 0.807 0.329 3e-65
Q99JR8531 SWI/SNF-related matrix-as no no 0.762 0.806 0.329 5e-65
Q92925531 SWI/SNF-related matrix-as no no 0.659 0.696 0.351 6e-64
E1BJD1531 SWI/SNF-related matrix-as no no 0.737 0.779 0.334 1e-63
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1 Back     alignment and function desciption
 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/450 (69%), Positives = 383/450 (85%), Gaps = 3/450 (0%)

Query: 112 TPNAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARRK 171
           +P  GG +G SSP+++TPG+  + KR  QKPP RPPG+ ++ N+ S  +T ELTPAAR+K
Sbjct: 86  SPGIGG-LGPSSPSLTTPGSL-NMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKK 143

Query: 172 KRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRM 231
           K+KLPEK + ++VAAILPE ALYTQLLEFE+RVD+AL RKK+DIQE+LKNPP +QKTLR+
Sbjct: 144 KQKLPEKSLQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRI 203

Query: 232 YVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFK 291
           YVFN+FANQ+ T P     + P W+LK+IGRILEDG DP   G +QK++ L+PKFSSFFK
Sbjct: 204 YVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFK 263

Query: 292 KITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSP 351
           ++T+ LDQ LYP+N +I+WE+ARSPA  EGFE+KRKG++EF A IR+EMNY PEK KLS 
Sbjct: 264 RVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLST 323

Query: 352 SLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQ 411
           +LM++LGIEV+TRPRIIAAIWHYVK +KLQ+PNDPS F CD  LQK FGEEK+KF  +SQ
Sbjct: 324 ALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQ 383

Query: 412 KISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDA 471
           KIS HL PPPPIHLEHKIKLSGN+PA ++CYD+LVDVPFP+++++   LAN EKNKEI+A
Sbjct: 384 KISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEA 443

Query: 472 CDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR 531
           CDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRNAE+ERR
Sbjct: 444 CDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERR 503

Query: 532 SDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 560
           SDFFNQPWVEDAVIRY+NR+ +AG+D  GS
Sbjct: 504 SDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).
Arabidopsis thaliana (taxid: 3702)
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3 Back     alignment and function description
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2 Back     alignment and function description
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2 Back     alignment and function description
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1 Back     alignment and function description
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=3 Back     alignment and function description
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=2 Back     alignment and function description
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=3 Back     alignment and function description
>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
255540265529 brg-1 associated factor, putative [Ricin 0.928 0.984 0.688 0.0
225456301546 PREDICTED: SWI/SNF complex component SNF 0.946 0.972 0.723 0.0
449455860547 PREDICTED: SWI/SNF complex component SNF 0.950 0.974 0.683 0.0
224133944515 chromatin remodeling complex subunit [Po 0.914 0.996 0.684 0.0
449438216560 PREDICTED: SWI/SNF complex component SNF 0.905 0.907 0.658 0.0
449516657560 PREDICTED: SWI/SNF complex component SNF 0.905 0.907 0.658 0.0
356511807543 PREDICTED: SWI/SNF complex component SNF 0.957 0.988 0.656 0.0
225451428548 PREDICTED: SWI/SNF complex component SNF 0.875 0.895 0.709 0.0
147766681548 hypothetical protein VITISV_041986 [Viti 0.875 0.895 0.707 0.0
356571363543 PREDICTED: SWI/SNF complex component SNF 0.957 0.988 0.652 0.0
>gi|255540265|ref|XP_002511197.1| brg-1 associated factor, putative [Ricinus communis] gi|223550312|gb|EEF51799.1| brg-1 associated factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/568 (68%), Positives = 443/568 (77%), Gaps = 47/568 (8%)

Query: 2   MNNNN------TPMK--NTGTLTGSQSMAMNSQSHLLSQTQGQTRDGSHFPGHFHLSEPH 53
           MNNNN      TP+   N GTLT  Q + +    H   QTQG       +PGHF LSE  
Sbjct: 1   MNNNNPAKSLGTPLAFANPGTLT--QPLPVQPSHHPQPQTQGVPA----YPGHFQLSELQ 54

Query: 54  AHALAQAQYAHAHAQAQAHAAHAQFQAHVQSQGHSQSQSQSQSQSQSQSQSQSHPQLQTP 113
           A     +QY        A AAHAQFQ+ VQS  HS +                  QLQ+P
Sbjct: 55  AQVHGHSQY--------AQAAHAQFQSQVQSSNHSTA------------------QLQSP 88

Query: 114 NAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARRKKR 173
           N   N GV SP+VS  GT  SAKRA QKPPSRPPG SSNTN+ S FKT ELTPAARRKK+
Sbjct: 89  NP-SNAGVPSPSVSAAGT-TSAKRANQKPPSRPPGGSSNTNTASPFKTMELTPAARRKKQ 146

Query: 174 KLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYV 233
           K+PEKQIPDK+AAILPE ALYTQ+L+FEAR+DSA+ARKKIDIQESLKNP R+QKTLR+Y+
Sbjct: 147 KIPEKQIPDKIAAILPESALYTQMLDFEARIDSAMARKKIDIQESLKNPSRIQKTLRVYI 206

Query: 234 FNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKI 293
           FNT  NQ +   EK   E P WSLK++GRILEDG+DP+L+G  QKS   Y KFSS+FKKI
Sbjct: 207 FNTHENQAQG--EKNNAEPPSWSLKIVGRILEDGKDPLLSGKPQKS---YSKFSSYFKKI 261

Query: 294 TIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSL 353
           TIYLDQSLYPDNHVILWESARSP L EGFEVKRKG+KEFTAIIR+EMNY PEK KLSPSL
Sbjct: 262 TIYLDQSLYPDNHVILWESARSPVLSEGFEVKRKGNKEFTAIIRLEMNYVPEKFKLSPSL 321

Query: 354 MELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKI 413
            E+LGIEV+TRP+I+ AIWHYVK K+LQ PNDPS FMCDPPL+K FGEEK+KFA +SQKI
Sbjct: 322 SEILGIEVETRPKILVAIWHYVKSKRLQIPNDPSFFMCDPPLKKLFGEEKVKFAMVSQKI 381

Query: 414 SQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACD 473
           SQHL PP PIHLEH+IKLSGN PAGT+CYD++VDVP PL+K++AAFLA+ EK+KEIDACD
Sbjct: 382 SQHLTPPQPIHLEHRIKLSGNCPAGTTCYDIIVDVPSPLQKDLAAFLASSEKHKEIDACD 441

Query: 474 ELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSD 533
           ELIC SIKKIHEHRRRRAFFL FSQSP EFIN LIASQSKDLKLV+GDASR+AEKERRSD
Sbjct: 442 ELICDSIKKIHEHRRRRAFFLDFSQSPAEFINTLIASQSKDLKLVSGDASRHAEKERRSD 501

Query: 534 FFNQPWVEDAVIRYMNRKSAGSDAAGST 561
           F+NQ WV DAVI Y+NRKSAG++  GST
Sbjct: 502 FYNQSWVGDAVILYLNRKSAGNNTPGST 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456301|ref|XP_002279969.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455860|ref|XP_004145668.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis sativus] gi|449515744|ref|XP_004164908.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133944|ref|XP_002321698.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222868694|gb|EEF05825.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438216|ref|XP_004136885.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516657|ref|XP_004165363.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511807|ref|XP_003524614.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Glycine max] Back     alignment and taxonomy information
>gi|225451428|ref|XP_002273749.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|147766681|emb|CAN60756.1| hypothetical protein VITISV_041986 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356571363|ref|XP_003553847.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
TAIR|locus:2174638534 CHC1 "AT5G14170" [Arabidopsis 0.796 0.837 0.657 5.3e-160
TAIR|locus:2078713458 AT3G01890 "AT3G01890" [Arabido 0.682 0.836 0.661 1.3e-137
UNIPROTKB|H9KZE0516 SMARCD1 "Uncharacterized prote 0.764 0.831 0.347 2.9e-70
FB|FBgn0025463515 Bap60 "Brahma associated prote 0.680 0.741 0.376 1.7e-68
UNIPROTKB|F1MTG9515 SMARCD1 "SWI/SNF-related matri 0.666 0.726 0.371 3.1e-67
MGI|MGI:1933623515 Smarcd1 "SWI/SNF related, matr 0.666 0.726 0.371 6.5e-67
UNIPROTKB|Q96GM5515 SMARCD1 "SWI/SNF-related matri 0.666 0.726 0.371 8.2e-67
RGD|1305406515 Smarcd1 "SWI/SNF related, matr 0.666 0.726 0.371 8.2e-67
UNIPROTKB|Q2TBN1515 SMARCD1 "SWI/SNF-related matri 0.666 0.726 0.369 2.8e-66
ZFIN|ZDB-GENE-080509-2476 smarcd3b "SWI/SNF related, mat 0.647 0.762 0.375 3.6e-66
TAIR|locus:2174638 CHC1 "AT5G14170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1537 (546.1 bits), Expect = 5.3e-160, Sum P(2) = 5.3e-160
 Identities = 296/450 (65%), Positives = 362/450 (80%)

Query:   112 TPNAGGNVGVSSPAVSTPGTGGSAKRATQKXXXXXXXXXXXXXXXXLFKTTELTPAARRK 171
             +P  GG +G SSP+++TPG+  + KR  QK                  +T ELTPAAR+K
Sbjct:    86 SPGIGG-LGPSSPSLTTPGSL-NMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKK 143

Query:   172 KRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRM 231
             K+KLPEK + ++VAAILPE ALYTQLLEFE+RVD+AL RKK+DIQE+LKNPP +QKTLR+
Sbjct:   144 KQKLPEKSLQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRI 203

Query:   232 YVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFK 291
             YVFN+FANQ+ T P     + P W+LK+IGRILEDG DP   G +QK++ L+PKFSSFFK
Sbjct:   204 YVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFK 263

Query:   292 KITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSP 351
             ++T+ LDQ LYP+N +I+WE+ARSPA  EGFE+KRKG++EF A IR+EMNY PEK KLS 
Sbjct:   264 RVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLST 323

Query:   352 SLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQ 411
             +LM++LGIEV+TRPRIIAAIWHYVK +KLQ+PNDPS F CD  LQK FGEEK+KF  +SQ
Sbjct:   324 ALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQ 383

Query:   412 KISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDA 471
             KIS           EHKIKLSGN+PA ++CYD+LVDVPFP+++++   LAN EKNKEI+A
Sbjct:   384 KISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEA 443

Query:   472 CDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR 531
             CDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRNAE+ERR
Sbjct:   444 CDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERR 503

Query:   532 SDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 560
             SDFFNQPWVEDAVIRY+NR+ +AG+D  GS
Sbjct:   504 SDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0048364 "root development" evidence=IMP
GO:0006281 "DNA repair" evidence=IMP
GO:0010224 "response to UV-B" evidence=IEP
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
TAIR|locus:2078713 AT3G01890 "AT3G01890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|H9KZE0 SMARCD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0025463 Bap60 "Brahma associated protein 60kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MTG9 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1933623 Smarcd1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q96GM5 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305406 Smarcd1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBN1 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080509-2 smarcd3b "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FMT4SNF12_ARATHNo assigned EC number0.69550.79670.8370yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
pfam0220176 pfam02201, SWIB, SWIB/MDM2 domain 3e-18
smart0015177 smart00151, SWIB, SWI complex, BAF60b domains 2e-17
COG5531237 COG5531, COG5531, SWIB-domain-containing proteins 1e-16
PRK06319860 PRK06319, PRK06319, DNA topoisomerase I/SWI domain 1e-07
PRK14724987 PRK14724, PRK14724, DNA topoisomerase III; Provisi 3e-04
>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain Back     alignment and domain information 
 Score = 78.8 bits (195), Expect = 3e-18
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query: 343 FPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEE 402
             +   LSP L + LG    +R  ++  +W Y+K   LQ P +    +CD  L+  FG +
Sbjct: 1   LTKPFPLSPDLAKFLGAGELSRTEVVKKLWQYIKEHNLQDPKNKRIILCDEKLKSIFGGD 60

Query: 403 KIKFATISQKISQHLI 418
           ++ F  +S+ +S H I
Sbjct: 61  RVGFFEMSKLLSSHFI 76

This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2. Length = 76
>gnl|CDD|128456 smart00151, SWIB, SWI complex, BAF60b domains Back     alignment and domain information
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 561
KOG2570420 consensus SWI/SNF transcription activation complex 100.0
COG5531237 SWIB-domain-containing proteins implicated in chro 99.92
smart0015177 SWIB SWI complex, BAF60b domains. 99.85
PF0220176 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW 99.84
KOG1946240 consensus RNA polymerase I transcription factor UA 99.72
PRK14724987 DNA topoisomerase III; Provisional 99.62
PRK06319860 DNA topoisomerase I/SWI domain fusion protein; Val 99.04
PF0336684 YEATS: YEATS family; InterPro: IPR005033 Named the 83.48
>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-111  Score=874.44  Aligned_cols=393  Identities=45%  Similarity=0.805  Sum_probs=370.6

Q ss_pred             ccccCCCCCCC-CCCCCCCCCCCccccccCCChHHHhhcCCCCCCC-CchHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008555          135 AKRATQKPPSR-PPGSSSNTNSGSLFKTTELTPAARRKKRKLPEKQ-IPDKVAAILPECALYTQLLEFEARVDSALARKK  212 (561)
Q Consensus       135 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aa~rkkrk~tDk~-iP~~v~~lvPes~~Y~~L~e~ErrLD~~I~RKr  212 (561)
                      ++|..++||.. |++++               .. ..||+|+.||. ||+++.+++||++.|..|+++|+|||++|+|||
T Consensus        20 ~~~~~~~~~~~~p~~~~---------------~~-~~kk~kl~dk~~i~~~~~~~ipes~~y~~Ll~~e~Kld~~i~Rk~   83 (420)
T KOG2570|consen   20 MSRQTPMPPLQDPPQAP---------------EP-ELKKKKLADKLNIPQRILELIPESQAYMDLLAFERKLDSTIIRKR   83 (420)
T ss_pred             cccCCCCCCCCCCCCCC---------------cc-hhhhhhcchhcccCHHHHhhCccHHHHHHHHHHHHHhhhHHHHhh
Confidence            67777777755 33322               00 14677788887 999999999999999999999999999999999


Q ss_pred             hhHHHHhcCCCCCceeEEEEEEEeecCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCchhhcccCCCCCCCcccccccce
Q 008555          213 IDIQESLKNPPRVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKK  292 (561)
Q Consensus       213 lDiqesl~rp~k~~rtLRIfIsNT~enQpwq~~~~~~~~~psWtLrIEGRLLdd~~~~~~~~~~~~~~~~~~KFSSFfk~  292 (561)
                      +||||+|+++.+.+|+|||||||||+||+|+......+..|+|||||||||||+..+.         . .++|||||||+
T Consensus        84 ~diqealK~p~~~kk~LRIyI~ntf~~~~~~~~~~~~a~~~sWtLriEGrLLd~~~~~---------~-~krkFSsFfks  153 (420)
T KOG2570|consen   84 LDIQEALKRPPKIKKKLRIYISNTFENQKPSTKDTPEADLPSWTLRIEGRLLDDPVDD---------W-GKRKFSSFFKS  153 (420)
T ss_pred             hhHHHHhcCCccccceEEEEEEecccCCCCCCCCCCCCCCcceeeeeeeeecccCccc---------c-ccccchHHHhh
Confidence            9999999999999999999999999999998766556779999999999999987321         1 17999999999


Q ss_pred             eeEeeCCCCC-CCCceEEecCCCCCCCCcceEEEecCCCcccEEEEEeecccCccccCCHHHHhhhCCCccCHHHHHHHH
Q 008555          293 ITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAI  371 (561)
Q Consensus       293 I~VelD~~ly-Pd~~~VEW~k~~s~~efDGfeIKR~Gden~~itI~L~~~~~Per~kLSpeLa~~LG~~e~TR~eiv~~L  371 (561)
                      |+|+||+++| |++|.||||+..++++||||+|||.||.++.|+|.|+++++|++|+|||.||.+||+.++||++||.+|
T Consensus       154 lvIelDk~~y~P~~~lvEW~r~~~~~etdGf~VKR~Gd~~v~ctIll~l~~~P~~fklsp~La~lLGi~t~Trp~iI~al  233 (420)
T KOG2570|consen  154 LVIELDKDLYGPDNHLVEWHRDPNTNETDGFQVKRPGDRNVRCTILLLLDYQPEEFKLSPRLANLLGIHTGTRPDIVTAL  233 (420)
T ss_pred             hhhhhhhhhccCccceeeeeecCCCCCcCceeeeccCCCccceEEEEeeccCCcccccCHHHHHHhhhccCcchHHHHHH
Confidence            9999999887 999999999998999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCceecChhhhhhhCcCccchhhHHHHHHccCCCCCCceeeeeeecCCCCCCCCceeeeEeeccCc
Q 008555          372 WHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFP  451 (561)
Q Consensus       372 W~YIK~n~Lqdp~dkr~I~cDe~Lk~LFg~d~i~f~eL~~lL~~HL~P~~PI~L~ytIrvd~~~~~~~t~yDV~Vdv~dp  451 (561)
                      |+|||.|+|||++|+.+|+||..|+++||+++++|.+|+.+|++||.|++||+|+|+|+||++.+++++||||+|+|++|
T Consensus       234 WqYIk~n~Lqd~~e~~~incD~~l~qif~~~rl~F~elp~~l~~lL~P~dPIvi~h~I~v~~~~~~~tacyDIdV~v~~p  313 (420)
T KOG2570|consen  234 WQYIKTNKLQDPEDSDFINCDKALEQIFGVDRLKFPELPQLLNPLLSPPDPIVIDHTISVDGNDTKVTACYDIDVEVEDP  313 (420)
T ss_pred             HHHHHHhccCCcccchhhcchHHHHHhhcccccccccchhhhhhccCCCCCeeecceeccCCCcccceeEEeeeeccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHcCCCCCCcchhcc
Q 008555          452 LEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR  531 (561)
Q Consensus       452 l~~~~~~fl~~~~~~keI~~LDekIa~~i~~I~~~k~rr~F~~~fSeDPv~FI~~wI~SQsrDLkvl~gd~~~~~E~~RR  531 (561)
                      ++.+|..|+.+++..+||+.||++|+.++++||+++.||+||++||+||++||++||+||++|||+|.||.++|+|++||
T Consensus       314 ~~~q~~nfl~~~~~~~eI~alD~kI~~li~~ine~~~rr~Ff~~Fs~dPvefin~wi~Sq~~Dlkv~~gd~~~N~e~eRr  393 (420)
T KOG2570|consen  314 RKSQMSNFLASTESQKEIAALDRKITELIQQINESKERRDFFLEFSKDPVEFINEWIESQSSDLKVLAGDVSGNPEEERR  393 (420)
T ss_pred             cchhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhcchhhHHhhccccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhHHHHHHHHHhccCC
Q 008555          532 SDFFNQPWVEDAVIRYMNRKSA  553 (561)
Q Consensus       532 sefy~qpWV~eAV~rYL~~k~~  553 (561)
                      ++||++|||+|||+||+++++.
T Consensus       394 aefy~qpw~~eav~ry~~~~~~  415 (420)
T KOG2570|consen  394 AEFYKQPWTDEAVSRYMFLKVQ  415 (420)
T ss_pred             HHHHcCccHHHHHHHHHHHHHh
Confidence            9999999999999999999976

>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics] Back     alignment and domain information
>smart00151 SWIB SWI complex, BAF60b domains Back     alignment and domain information
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation [] Back     alignment and domain information
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription] Back     alignment and domain information
>PRK14724 DNA topoisomerase III; Provisional Back     alignment and domain information
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
1v31_A93 Solution Structure Of The SwibMDM2 DOMAIN OF THE Hy 3e-26
1uhr_A93 Solution Structure Of The Swib Domain Of Mouse Brg1 9e-12
>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE Hypothetical Protein At5g14170 From Arabidopsis Thaliana Length = 93 Back     alignment and structure 
Iteration: 1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 344 PEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEK 403
           PEK KLS +LM++LGIEV+TRPRIIAAIWHYVK +KLQ+PNDPS F CD  LQK FGEEK
Sbjct: 9   PEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEK 68
Query: 404 IKFATISQKISQ 415
           +KF  +SQKIS 
Sbjct: 69  LKFTMVSQKISH 80
>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1- Associated Factor 60a Length = 93 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
1uhr_A93 SWI/SNF related, matrix associated, actin dependen 1e-25
1v31_A93 Hypothetical protein RAFL11-05-P19; SWI/SNF comple 8e-25
1v32_A101 AT5G08430, hypothetical protein RAFL09-47-K03; SWI 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Length = 93 Back     alignment and structure
 Score =  100 bits (250), Expect = 1e-25
 Identities = 35/82 (42%), Positives = 50/82 (60%)

Query: 341 NYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFG 400
           +  P + KL P L  LLGI   TRP II A+W Y+K  KLQ P++    +CD  LQ+ F 
Sbjct: 6   SGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE 65

Query: 401 EEKIKFATISQKISQHLIPPPP 422
            +++KF+ I Q++   L+PP P
Sbjct: 66  SQRMKFSEIPQRLHALLMPPEP 87
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 93 Back     alignment and structure
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 101 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
1uhr_A93 SWI/SNF related, matrix associated, actin dependen 99.95
1v31_A93 Hypothetical protein RAFL11-05-P19; SWI/SNF comple 99.94
1v32_A101 AT5G08430, hypothetical protein RAFL09-47-K03; SWI 99.85
3dac_M130 MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X 96.36
1z1m_A119 Ubiquitin-protein ligase E3 MDM2; peptide-binding 95.69
2z5s_M140 MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylat 95.62
1ycq_A107 MDM2, MDM2; anti-oncogene, DNA-binding, transcript 95.55
3fea_A100 MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, p 95.38
2axi_A115 Ubiquitin-protein ligase E3 MDM2; drug design, pro 94.07
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Back     alignment and structure
Probab=99.95  E-value=6.7e-29  Score=214.50  Aligned_cols=88  Identities=40%  Similarity=0.727  Sum_probs=86.2

Q ss_pred             eecccCccccCCHHHHhhhCCCccCHHHHHHHHHHHHHhcCCCCCCCCCceecChhhhhhhCcCccchhhHHHHHHccCC
Q 008555          339 EMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLI  418 (561)
Q Consensus       339 ~~~~~Per~kLSpeLa~~LG~~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~LFg~d~i~f~eL~~lL~~HL~  418 (561)
                      +++|+|++|+||++||+|||..++||++|+++||+|||.||||||+||+.|+||++|++|||+++|+|++|+++|++||.
T Consensus         4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~   83 (93)
T 1uhr_A            4 GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLM   83 (93)
T ss_dssp             CCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEE
T ss_pred             ccccCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceee
Q 008555          419 PPPPIHLE  426 (561)
Q Consensus       419 P~~PI~L~  426 (561)
                      |++||+|+
T Consensus        84 p~~PI~i~   91 (93)
T 1uhr_A           84 PPEPSGPS   91 (93)
T ss_dssp             CSSCCCSS
T ss_pred             CCCCeeCC
Confidence            99999875
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} Back     alignment and structure
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens} Back     alignment and structure
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M Back     alignment and structure
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1 Back     alignment and structure
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A Back     alignment and structure
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 561
d1uhra_93 a.42.1.1 (A:) SWI/SNF related regulator of chromat 7e-25
d1v31a_93 a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl 3e-23
d1v32a_101 a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl 9e-13
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Length = 93 Back     information, alignment and structure

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (240), Expect = 7e-25
 Identities = 35/80 (43%), Positives = 49/80 (61%)

Query: 343 FPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEE 402
            P + KL P L  LLGI   TRP II A+W Y+K  KLQ P++    +CD  LQ+ F  +
Sbjct: 8   QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ 67

Query: 403 KIKFATISQKISQHLIPPPP 422
           ++KF+ I Q++   L+PP P
Sbjct: 68  RMKFSEIPQRLHALLMPPEP 87
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 Back     information, alignment and structure
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
d1uhra_93 SWI/SNF related regulator of chromatin (BRG1-assoc 99.92
d1v31a_93 Hypothetical protein AT5G14170 (rafl11-05-p19) {Th 99.91
d1v32a_101 Hypothetical protein AT5G08430 (rafl09-47-k03) {Th 99.78
d1ttva_107 MDM2 {African clawed frog (Xenopus laevis) [TaxId: 97.37
d2axia185 MDM2 {Human (Homo sapiens) [TaxId: 9606]} 97.3
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.5e-26  Score=196.35  Aligned_cols=82  Identities=43%  Similarity=0.800  Sum_probs=80.2

Q ss_pred             ccCccccCCHHHHhhhCCCccCHHHHHHHHHHHHHhcCCCCCCCCCceecChhhhhhhCcCccchhhHHHHHHccCCCCC
Q 008555          342 YFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPP  421 (561)
Q Consensus       342 ~~Per~kLSpeLa~~LG~~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~LFg~d~i~f~eL~~lL~~HL~P~~  421 (561)
                      ..|++|+||++|++|||++++||++|+++||+|||.||||||+|+++|+||+.|++|||+++|.|++|+++|++||.|++
T Consensus         7 g~p~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqdp~nkr~I~cD~~L~~lfg~~~v~~~~l~~~L~~Hl~p~e   86 (93)
T d1uhra_           7 GQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE   86 (93)
T ss_dssp             SSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred             CCCCCCCCCHHHHHHHCCCCcCHHHHHHHHHHHHHHhcCCCCCCCCEEecCHHHHHHhCCCeecHHHHHHHHHhhCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cc
Q 008555          422 PI  423 (561)
Q Consensus       422 PI  423 (561)
                      |.
T Consensus        87 P~   88 (93)
T d1uhra_          87 PS   88 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            96
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure