Citrus Sinensis ID: 008559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
MTIIEEPEPNPTADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQDMAPEQLIGNTGASSAAAPVNNTEATVNVSTISVRPTDSVVPGPPAPADSSKKRRNADDPRTRSSQSHHQRKNQGRRISETEEGNEEGVIVKRSVGNKKNTNKSTGNNGNNGNSKEGRWAEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTSTGPLTFSSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWKLNVKVEDS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccEEEEEccEEEEEEcccEEEEEEEcccccccccc
ccEEEccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHcccccccEEEEcccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHccccEEEEEEcccccccHHHHHHHHHHccccccccEEEEEccccccccccccccHHHccccHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHcccccccEEEEEHHHHHHccccccccHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEccccEEEEcccccEEEEEEccccccccccc
mtiieepepnptadHILDWLEESVSflpsflddpynangiddyqwwnqgqdmapeqligntgassaaapvnnteatvnvstisvrptdsvvpgppapadsskkrrnaddprtrssqshhqrknqgrriseteegneeGVIVKRSvgnkkntnkstgnngnngnskegrwAEQLLNPCAAAITAGNLTRVQHLLYVLHElasptgdanHRLAAHGLRALTHHlsslssssttttstgpltfssteprfFQKSLLNfydkspwfafpnnianSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTrrsggppplvrltiiaptaendqnaetpfsvgppgdnyslqLLGFAKSMNINLQInrleshplqdlssqmvstspeetLIVCTQFRlhhlnhstpdERTEFLRVLRSlepkgvilsennmdcscgncgdfATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRaemnegkdkwcdrmrgvgfvgdvfgedaIDGGRALLRKYDNSWETRVEERDGCIElwwkgqpvsfcslwklnvkveds
mtiieepepnptADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQDMAPEQLIGNTGASSAAAPVNNTEATVNVStisvrptdsvvpgppapadsskkrrnaddprtrssqshhqrknqgrriseteegneegvivkrsvgnkkntnkstgnngnngnskeGRWAEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLsslssssttttstgpltfsstEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALtrrsggppPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTsaafkgreseerrvMEGEaakaltnraemnegkdkwcdrMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIElwwkgqpvsfcslwklnvkveds
MTIIEEPEPNPTADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQDMAPEQLIGNTGASSAAAPVNNTEATVNVSTISVRPTDSVVPGPPAPADSSKKRRNADDPRTRSSQSHHQRKNQGRRISETEEGNEEGVIVKRSVgnkkntnkstgnngnngnskEGRWAEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRAlthhlsslssssttttstgpltfsstEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRgvgfvgdvfgEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWKLNVKVEDS
**************HILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQ**********************************************************************************************************************WAEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRAL***************************RFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIA********************NYSLQLLGFAKSMNINLQINR********************TLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDST**********************************KWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWKLNVK****
********************EESVSFLPSFLDDPYNANGIDDYQWW*****************************************************************************************************************************QLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSS****************RFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQN*ETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWK*NV*****
MTIIEEPEPNPTADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQDMAPEQLIGNTGASSAAAPVNNTEATVNVSTISVRP**************************************************EGVIVKRSVGNKKNTNKSTGNNGNNGNSKEGRWAEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHL*****************FSSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPL************EETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAF***********EGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWKLNVKVEDS
*TII****PNPTADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQG******************APVNNTEATVNV*****************************************************************************NNGNNGNSKEGRWAEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTSTGPLTFSSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWKLN******
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MTIIEEPEPNPTADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQDMAPEQLIGNTGASSAAAPVNNTEATVNVSTISVRPTDSVVPGPPAPADSSKKRRNADDPRTRSSQSHHQRKNQGRRISETEEGNEEGVIVKRSVGNKKNTNKSTGNNGNNGNSKEGRWAEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTSTGPLTFSSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWKLNVKVEDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query561 2.2.26 [Sep-21-2011]
Q4VYC8554 Nodulation-signaling path N/A no 0.966 0.978 0.638 0.0
Q9LRW3510 Scarecrow-like protein 29 yes no 0.898 0.988 0.517 1e-146
Q9SN22410 Scarecrow-like protein 32 no no 0.641 0.878 0.315 3e-38
Q9SZF7531 Protein SHORT-ROOT OS=Ara no no 0.670 0.708 0.292 9e-34
A2XIA8603 Protein SHORT-ROOT 2 OS=O N/A no 0.666 0.620 0.272 1e-33
Q75I13603 Protein SHORT-ROOT 2 OS=O yes no 0.666 0.620 0.272 1e-33
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.622 0.638 0.281 7e-32
A2YN56602 Protein SHORT-ROOT 1 OS=O N/A no 0.666 0.621 0.283 9e-31
Q8H2X8602 Protein SHORT-ROOT 1 OS=O no no 0.666 0.621 0.283 1e-30
Q9LF53523 DELLA protein RGL3 OS=Ara no no 0.613 0.657 0.273 1e-29
>sp|Q4VYC8|NSP1_MEDTR Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/561 (63%), Positives = 446/561 (79%), Gaps = 19/561 (3%)

Query: 8   EPNPTADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQDMAPE-QLIGNTGASSA 66
           EPNPT+DHILDWLE SVSF PSFLDDPYN   I +Y+ WNQ QD++ + Q+  NT +S+A
Sbjct: 4   EPNPTSDHILDWLEGSVSFFPSFLDDPYNNGYIHEYEIWNQNQDISNQYQIDANTNSSNA 63

Query: 67  AAPVNNTEATVNVSTISVRPTDSV--VPGPPAPADSSKKRRNADDPRTRSSQSHHQRKN- 123
                N  A    ++ +    +S   +P    P     K+RNA+D  +   Q  +Q+   
Sbjct: 64  TNSTTNIVAASTTTSTTSLEPNSFNNIPFSDLP-----KKRNAEDELSLKKQPQNQKNKR 118

Query: 124 -QGRRISETEEGNE--EGVIVKRSVGNKKNTNKSTGNNGNNGNSKEGRWAEQLLNPCAAA 180
            + R ++E++ G+   EG +V++S GNKK   K+ G+N NNGN+K+GRWAEQLLNPCA A
Sbjct: 119 LKSRPMNESDNGDAALEGTVVRKSGGNKKGAAKANGSNSNNGNNKDGRWAEQLLNPCAVA 178

Query: 181 ITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTSTGPLTF 240
           IT GNL RVQHLLYVLHELAS TGDANHRLAAHGLRALTHHLSS    S+++T +G +TF
Sbjct: 179 ITGGNLNRVQHLLYVLHELASTTGDANHRLAAHGLRALTHHLSS----SSSSTPSGTITF 234

Query: 241 SSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQ 300
           +STEPRFFQKSLL FY+ SPWF+FPNNIAN+SILQ+LA++ +N ++ LHILDIGVSHGVQ
Sbjct: 235 ASTEPRFFQKSLLKFYEFSPWFSFPNNIANASILQVLAEEPNN-LRTLHILDIGVSHGVQ 293

Query: 301 WPTLLEALTRRSGGPPPLVRLTII--APTAENDQNAETPFSVGPPGDNYSLQLLGFAKSM 358
           WPT LEAL+RR GGPPPLVRLT++  + + ENDQN ETPFS+GP GD +S  LLG+A+S+
Sbjct: 294 WPTFLEALSRRPGGPPPLVRLTVVNASSSTENDQNMETPFSIGPCGDTFSSGLLGYAQSL 353

Query: 359 NINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLE 418
           N+NLQI +L++HPLQ L+++ V TS +ETLIVC QFRLHHLNH+ PDER+EFL+VLR +E
Sbjct: 354 NVNLQIKKLDNHPLQTLNAKSVDTSSDETLIVCAQFRLHHLNHNNPDERSEFLKVLRGME 413

Query: 419 PKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAK 478
           PKGVILSENNM+C C +CGDFATGF+RRVEYLWRFLDSTS+AFK R+S+ER++MEGEAAK
Sbjct: 414 PKGVILSENNMECCCSSCGDFATGFSRRVEYLWRFLDSTSSAFKNRDSDERKMMEGEAAK 473

Query: 479 ALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIE 538
           ALTN+ EMNE ++KWC+RM+  GF G+VFGEDAIDGGRALLRKYDN+WE +VEE    +E
Sbjct: 474 ALTNQREMNERREKWCERMKEAGFAGEVFGEDAIDGGRALLRKYDNNWEMKVEENSTSVE 533

Query: 539 LWWKGQPVSFCSLWKLNVKVE 559
           LWWK QPVSFCSLWKL+ + E
Sbjct: 534 LWWKSQPVSFCSLWKLDKQPE 554
Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK).
Medicago truncatula (taxid: 3880)
>sp|Q9LRW3|SCL29_ARATH Scarecrow-like protein 29 OS=Arabidopsis thaliana GN=SCL29 PE=2 SV=1 Back     alignment and function description
>sp|Q9SN22|SCL32_ARATH Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZF7|SHR_ARATH Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1 Back     alignment and function description
>sp|A2XIA8|SHR2_ORYSI Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1 Back     alignment and function description
>sp|Q75I13|SHR2_ORYSJ Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|A2YN56|SHR1_ORYSI Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1 Back     alignment and function description
>sp|Q8H2X8|SHR1_ORYSJ Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LF53|RGL3_ARATH DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
225442121545 PREDICTED: nodulation-signaling pathway 0.939 0.966 0.708 0.0
255560627548 Nodulation signaling pathway 1 protein, 0.973 0.996 0.682 0.0
297743002504 unnamed protein product [Vitis vinifera] 0.869 0.968 0.666 0.0
224058659556 GRAS family transcription factor [Populu 0.983 0.992 0.686 0.0
224073702562 GRAS family transcription factor [Populu 0.989 0.987 0.678 0.0
357514011554 Nodulation signaling pathway 1 protein [ 0.966 0.978 0.638 0.0
302399045552 SCL domain class transcription factor [M 0.939 0.954 0.666 0.0
449448118555 PREDICTED: nodulation-signaling pathway 0.962 0.972 0.626 0.0
117518689542 nodulation signaling pathway 1 protein [ 0.935 0.968 0.644 0.0
449480689555 PREDICTED: LOW QUALITY PROTEIN: nodulati 0.962 0.972 0.625 0.0
>gi|225442121|ref|XP_002273108.1| PREDICTED: nodulation-signaling pathway 1 protein [Vitis vinifera] Back     alignment and taxonomy information
 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/559 (70%), Positives = 461/559 (82%), Gaps = 32/559 (5%)

Query: 4   IEEPEPNPTADHILDWLEESVSFLPSFLDDPYNANGIDDYQWWNQGQDMAPEQLIGNTGA 63
           IEEPEPNPT+DHILDWLE+SVSFLPSFLDDPY +  I  YQWW+QGQ++  +        
Sbjct: 3   IEEPEPNPTSDHILDWLEDSVSFLPSFLDDPYGSGDISSYQWWDQGQELDQDF------- 55

Query: 64  SSAAAPVNNTEATVNVSTISVRPTDSVVPGPPAP------ADSSKKRRNADDPRTRSSQS 117
                  + T+ ++N ++ +V    +V P  PA       +DSSKKR++ DDP  R +  
Sbjct: 56  ------TSYTDNSINCNSAAV--AGAVTPCDPASVDHLQLSDSSKKRKSPDDPAPRVA-P 106

Query: 118 HHQRKNQGRRISETEEGN--EEGVIVKRSVGNKKNTNKSTGNNGNNGNSKEGRWAEQLLN 175
           +HQRKNQGRR SETE+G+  EE V  K+SVG+KK T K+TGNN NN NSKEGRWAEQLLN
Sbjct: 107 NHQRKNQGRRASETEDGDAVEEAVAAKKSVGSKKATGKATGNNCNNSNSKEGRWAEQLLN 166

Query: 176 PCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTST 235
           PCA AITAGNL+RVQHLLYVLHELAS TGDANHRLA HGLRAL+          +++ S 
Sbjct: 167 PCATAITAGNLSRVQHLLYVLHELASSTGDANHRLADHGLRALS-------HHLSSSVSV 219

Query: 236 GPLTFSSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGV 295
           GP+TFSSTEPRFFQ+SLL FY+ SPWFAFPNNIAN+SILQIL     ++ +NLHILDIGV
Sbjct: 220 GPITFSSTEPRFFQRSLLKFYEVSPWFAFPNNIANTSILQIL-NGVPSRSRNLHILDIGV 278

Query: 296 SHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFA 355
           SHGVQWPTLLEAL+RRSGGPPPLVRLT+IA T++NDQN ETPFS+ PPGDN+S +LL FA
Sbjct: 279 SHGVQWPTLLEALSRRSGGPPPLVRLTVIAATSDNDQNTETPFSIAPPGDNFSARLLSFA 338

Query: 356 KSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLR 415
           KSMNINLQINRL++HPLQ LS Q++ TSP+ETLIVC QFRLHHLNH+TPDERTEFL+VLR
Sbjct: 339 KSMNINLQINRLDNHPLQSLSPQLIDTSPDETLIVCAQFRLHHLNHNTPDERTEFLKVLR 398

Query: 416 SLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGE 475
            LEP+ VILSENNMDCSC NCGDFATGF+RR+EYLW+FLDSTSAAFKGRESEERRVMEGE
Sbjct: 399 KLEPEAVILSENNMDCSCTNCGDFATGFSRRIEYLWKFLDSTSAAFKGRESEERRVMEGE 458

Query: 476 AAKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDG 535
           AA+ALTN  EMNEGK+KWC+RMRGVGF G+VFGEDAIDG RALL+KYD++WE RVEE+DG
Sbjct: 459 AARALTNPGEMNEGKEKWCERMRGVGFAGEVFGEDAIDGARALLKKYDSNWEMRVEEKDG 518

Query: 536 CIELWWKGQPVSFCSLWKL 554
           C+ LWWKG PVSFCSLW+L
Sbjct: 519 CVGLWWKGLPVSFCSLWRL 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255560627|ref|XP_002521327.1| Nodulation signaling pathway 1 protein, putative [Ricinus communis] gi|223539405|gb|EEF40995.1| Nodulation signaling pathway 1 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297743002|emb|CBI35869.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224058659|ref|XP_002299589.1| GRAS family transcription factor [Populus trichocarpa] gi|66947640|emb|CAJ00014.1| Nodulation Signaling Pathway 1 protein homologue 1 [Populus trichocarpa] gi|222846847|gb|EEE84394.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224073702|ref|XP_002304134.1| GRAS family transcription factor [Populus trichocarpa] gi|66947642|emb|CAJ00015.1| Nodulation Signaling Pathway 1 protein homologue 2 [Populus trichocarpa] gi|222841566|gb|EEE79113.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357514011|ref|XP_003627294.1| Nodulation signaling pathway 1 protein [Medicago truncatula] gi|71648721|sp|Q4VYC8.1|NSP1_MEDTR RecName: Full=Nodulation-signaling pathway 1 protein gi|66947619|emb|CAJ00005.1| Nodulation Signaling Pathway 1 protein [Medicago truncatula] gi|66947628|emb|CAJ00010.1| Nodulation Signaling Pathway 1 protein [Medicago truncatula] gi|355521316|gb|AET01770.1| Nodulation signaling pathway 1 protein [Medicago truncatula] gi|357394653|gb|AET75782.1| NSP1 [Cloning vector pHUGE-MtNFS] gi|357394666|gb|AET75794.1| NSP1 [Cloning vector pHUGE-LjMtNFS] Back     alignment and taxonomy information
>gi|302399045|gb|ADL36817.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449448118|ref|XP_004141813.1| PREDICTED: nodulation-signaling pathway 1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|117518689|gb|ABK35066.1| nodulation signaling pathway 1 protein [Lotus japonicus] Back     alignment and taxonomy information
>gi|449480689|ref|XP_004155968.1| PREDICTED: LOW QUALITY PROTEIN: nodulation-signaling pathway 1 protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
TAIR|locus:2087994510 AT3G13840 "AT3G13840" [Arabido 0.525 0.578 0.590 8e-110
TAIR|locus:2083073410 AT3G49950 "AT3G49950" [Arabido 0.661 0.904 0.286 7.4e-34
TAIR|locus:2120106531 SHR "AT4G37650" [Arabidopsis t 0.663 0.700 0.285 1.5e-28
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.516 0.530 0.285 1.3e-24
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.513 0.550 0.289 5.3e-21
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.506 0.532 0.267 1.3e-19
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.508 0.557 0.271 7.1e-19
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.506 0.483 0.261 1e-18
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.629 0.720 0.249 1.1e-17
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.493 0.474 0.282 1.7e-17
TAIR|locus:2087994 AT3G13840 "AT3G13840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 946 (338.1 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
 Identities = 183/310 (59%), Positives = 229/310 (73%)

Query:   244 EPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPT 303
             E + FQK+LL FY+ SPWFA PNN+ANS+ILQILAQD  ++ ++LHI+DIGVSHG+QWPT
Sbjct:   216 EVKMFQKTLLKFYEVSPWFALPNNMANSAILQILAQDPKDK-KDLHIIDIGVSHGMQWPT 274

Query:   304 LLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQ 363
             LLEAL+ R  GPPP VR+T+I+     D  A+ PFSVGPPG NY  QLLGFA+S+ INLQ
Sbjct:   275 LLEALSCRLEGPPPRVRITVIS-----DLTADIPFSVGPPGYNYGSQLLGFARSLKINLQ 329

Query:   364 INRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVI 423
             I+ L+         Q++ TSP E LIVC QFRLHHL HS  DER E L+ +RSL PKGV+
Sbjct:   330 ISVLDK-------LQLIDTSPHENLIVCAQFRLHHLKHSINDERGETLKAVRSLRPKGVV 382

Query:   424 LSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNR 483
             L ENN +CS  +  DFA GF++++EY+W+FLDSTS+ FK   SEER++MEGEA K L N 
Sbjct:   383 LCENNGECS--SSADFAAGFSKKLEYVWKFLDSTSSGFKEENSEERKLMEGEATKVLMNA 440

Query:   484 AEMNEGKDKWCDRMRXXXXXXXXXXEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKG 543
              +MNEGK+KW +RMR          EDA+DG ++LLRKYDN+WE R+E+ D    L WKG
Sbjct:   441 GDMNEGKEKWYERMREAGFFVEAFEEDAVDGAKSLLRKYDNNWEIRMEDGDTFAGLMWKG 500

Query:   544 QPVSFCSLWK 553
             + VSFCSLWK
Sbjct:   501 EAVSFCSLWK 510
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2083073 AT3G49950 "AT3G49950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120106 SHR "AT4G37650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4VYC8NSP1_MEDTRNo assigned EC number0.63810.96610.9783N/Ano
Q9LRW3SCL29_ARATHNo assigned EC number0.51790.89830.9882yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 5e-93
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  289 bits (741), Expect = 5e-93
 Identities = 128/394 (32%), Positives = 187/394 (47%), Gaps = 32/394 (8%)

Query: 170 AEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSS 229
              LL  CA A+++G+L+  Q +L  L++LASP GD   RLAA+   AL   L+   S S
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLA--RSGS 58

Query: 230 TTTTSTGPLTFSSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLH 289
           +  ++  P   + ++      +   FY+ SP+  F +  AN +IL+    +       +H
Sbjct: 59  SIYSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEER-----VH 113

Query: 290 ILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSL 349
           I+D  +  G+QWP+L++AL  R GG PP +R+T I             FS     +    
Sbjct: 114 IIDFDIGQGLQWPSLIQALASRPGG-PPHLRITGIGSPQ---------FSSAEELEETGD 163

Query: 350 QLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHL-NHSTPDERT 408
           +L  FA S+ +  + N L +  L+DL  +M+   P E L V   F LH L + S   E  
Sbjct: 164 RLAQFADSLGVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESP 223

Query: 409 EFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEE 468
            FLR+++SL PK V L E   +    N   F   F   + Y     DS  A    R+SEE
Sbjct: 224 TFLRLVKSLNPKVVTLVEQEANH---NSAPFLARFVEALHYYSALFDSLEATL-PRDSEE 279

Query: 469 RRVME-----GEAAKALTN----RAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALL 519
           RR +E      E    +      R E +E   KW +RMR  GF      E A+   + LL
Sbjct: 280 RRKVERELLGREIVNVVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLL 339

Query: 520 RKYDNSWETRVEERDGCIELWWKGQPVSFCSLWK 553
           R Y      RVEE +G + L WKG+P+   S W+
Sbjct: 340 RLY-YVDGYRVEEDNGSLVLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 561
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.45
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.99
PRK06202232 hypothetical protein; Provisional 96.69
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.1
PLN02233261 ubiquinone biosynthesis methyltransferase 95.85
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.41
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 95.37
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 95.11
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 94.27
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 93.59
PRK08317241 hypothetical protein; Provisional 93.43
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 93.29
PLN02336475 phosphoethanolamine N-methyltransferase 92.94
PRK12335287 tellurite resistance protein TehB; Provisional 92.69
TIGR03438301 probable methyltransferase. This model represents 92.64
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 92.55
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 92.53
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 92.4
PRK11207197 tellurite resistance protein TehB; Provisional 91.99
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 90.89
PLN02244340 tocopherol O-methyltransferase 90.16
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 89.79
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 89.77
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 89.59
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 89.39
PLN02336 475 phosphoethanolamine N-methyltransferase 89.33
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 88.21
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 88.17
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 88.16
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 87.8
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 86.63
PRK10258251 biotin biosynthesis protein BioC; Provisional 83.58
PRK05785226 hypothetical protein; Provisional 81.89
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 81.88
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 81.32
TIGR00138181 gidB 16S rRNA methyltransferase GidB. GidB (glucos 81.17
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 80.83
PLN02585315 magnesium protoporphyrin IX methyltransferase 80.52
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-101  Score=818.09  Aligned_cols=361  Identities=37%  Similarity=0.571  Sum_probs=329.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCCCCchHHH
Q 008559          170 AEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTSTGPLTFSSTEPRFFQ  249 (561)
Q Consensus       170 l~~LLl~CA~AV~~gn~~~A~~lL~~L~~laSp~Gd~~qRlA~yFaeAL~~RL~g~~~~~~~~~s~~~~~~~s~~~~~~~  249 (561)
                      |++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.+.....  ......+.....
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~--~~~~~~~~~~~~   78 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPP--SSPSPSESSEQL   78 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCC--ccccccchHHHH
Confidence            589999999999999999999999999999999999999999999999999999977652111100  001112245678


Q ss_pred             HHHHHhhccCCCCCchhHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCC
Q 008559          250 KSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAE  329 (561)
Q Consensus       250 ~A~~~f~e~sP~~kfahftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~  329 (561)
                      .||+.||++|||+||+|||||||||||++|+++     ||||||||++|+|||+|||+||.|++||| +||||||+++.+
T Consensus        79 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~-----vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~  152 (374)
T PF03514_consen   79 AAYQLFYELSPFLKFAHFTANQAILEAFEGERR-----VHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITGIGPPNS  152 (374)
T ss_pred             HHHHHHHHHhhHHhhhhhchhHHHHHHhccCcc-----eEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEeccCCCC
Confidence            899999999999999999999999999999999     99999999999999999999999999988 899999999764


Q ss_pred             cCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCC---Cch
Q 008559          330 NDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHST---PDE  406 (561)
Q Consensus       330 ~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es---~~~  406 (561)
                      ..         ...+++||+||.+||+++||||||++|...+||++++++|++++||+|||||+|+||||.+++   .++
T Consensus       153 ~~---------~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~  223 (374)
T PF03514_consen  153 GS---------ADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENP  223 (374)
T ss_pred             Cc---------HHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccch
Confidence            21         256899999999999999999999998666999999999999999999999999999999764   358


Q ss_pred             HHHHHHHHHhcCCCEEEEEeccCCCCCCCCCChhhHHHHHHHHHHHHHhhhhhhcCCCChHHhhhhe----------eee
Q 008559          407 RTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVME----------GEA  476 (561)
Q Consensus       407 r~~~L~~IR~L~PkvVvlvE~ead~~~~n~~~F~~RF~eaL~yY~alfDSLdaa~~~r~s~eR~~iE----------ivA  476 (561)
                      |+.||+.||+|+|+|||++|+|+|   ||+++|++||.|||+||+++|||||++ +|+++.+|..+|          |||
T Consensus       224 ~~~~L~~ir~L~P~vvv~~E~ea~---~n~~~F~~RF~eal~yYsalfdsle~~-~~~~~~~r~~~E~~~~~~eI~niVa  299 (374)
T PF03514_consen  224 RDAFLRVIRSLNPKVVVLVEQEAD---HNSPSFLERFREALHYYSALFDSLEAC-LPRDSEERLAVERLFFGREIMNIVA  299 (374)
T ss_pred             HHHHHHHHHhcCCCEEEEEeecCC---CCCCchHHHHHHHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHhhhHHHHhhh
Confidence            999999999999999999999999   999999999999999999999999955 578889998888          899


Q ss_pred             ecccccccccccChHHHHHHHhcCCCccccCChhHHHHHHHHHhhcCCCcceEEEeeCCEEEEEeCCceeEEEEeee
Q 008559          477 AKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWK  553 (561)
Q Consensus       477 ~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~vpls~~a~~qAr~LL~~~~~~~~~~vee~~g~L~LgWkgrpL~~~SAWr  553 (561)
                      |||.+|+ ||||++++|+.||.+|||+++|+|++++.|||.||++|+ +.+|++++++|||+||||++||+++|+||
T Consensus       300 ~eg~~R~-eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  300 CEGEERV-ERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             ccccccc-ccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999 999999999999999999999999999999999999998 55677788999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information
>PRK10258 biotin biosynthesis protein BioC; Provisional Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>TIGR00138 gidB 16S rRNA methyltransferase GidB Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 57/421 (13%), Positives = 104/421 (24%), Gaps = 117/421 (27%)

Query: 120 QRKNQGRRISET-EEGNEEGVIVKRSVGNKKNTN----KSTGNNGNNGNSKEGRWAEQLL 174
              +   R+  T     EE  +V++ V      N     S         S   R   +  
Sbjct: 59  DAVSGTLRLFWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 175 NPC---AAAITAGNLTRVQHLLYV---LHELASPTGDANHRLAAHGLR-----ALTHHLS 223
           +            N++R+Q  L +   L EL          +   G+       +   L 
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-----VLIDGVLGSGKTWVA--LD 169

Query: 224 SLSSSSTTTTSTGP---LTFSS-TEPRFFQKSLLNFY-----------DKSPWFAFPNNI 268
              S             L   +   P    + L               D S       + 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 269 ANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEAL---------TRRSGGPPPLV 319
             + + ++L    +     L +L       VQ      A          TR       L 
Sbjct: 230 IQAELRRLLKSKPYENC--LLVLL-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 320 RLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQM 379
             T    + ++     TP        +    L    K ++             QDL  ++
Sbjct: 283 AATTTHISLDHHSMTLTP--------DEVKSL--LLKYLDC----------RPQDLPREV 322

Query: 380 VSTSPEETLIVCTQF---------RLHHLNHSTPDERTEFLRV-LRSLEPKGVILSENNM 429
           ++T+P       +              +  H   D+ T  +   L  LEP      +   
Sbjct: 323 LTTNP----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFD 376

Query: 430 DCSCGNCGDFATGF-------ARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTN 482
             S          F          +  +W  +          +S+   V+      +L  
Sbjct: 377 RLSV---------FPPSAHIPTILLSLIWFDVI---------KSDVMVVVNKLHKYSLVE 418

Query: 483 R 483
           +
Sbjct: 419 K 419

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.68
1vl5_A260 Unknown conserved protein BH2331; putative methylt 96.77
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.65
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 96.56
3dp7_A363 SAM-dependent methyltransferase; structural genomi 96.33
1xxl_A239 YCGJ protein; structural genomics, protein structu 96.33
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.32
2r3s_A335 Uncharacterized protein; methyltransferase domain, 96.24
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 96.23
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 96.2
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.12
3hnr_A220 Probable methyltransferase BT9727_4108; structural 95.75
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 95.72
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 95.69
3f4k_A257 Putative methyltransferase; structural genomics, P 95.68
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 95.67
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.65
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 95.56
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 95.53
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 95.38
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 95.28
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 95.14
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 95.05
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 95.05
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 95.03
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 94.97
3gu3_A284 Methyltransferase; alpha-beta protein, structural 94.91
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 94.82
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 94.69
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 94.65
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 94.61
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 94.57
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.5
3m70_A286 Tellurite resistance protein TEHB homolog; structu 94.44
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 94.43
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 94.35
3ege_A261 Putative methyltransferase from antibiotic biosyn 93.99
2p7i_A250 Hypothetical protein; putative methyltransferase, 93.67
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 93.57
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 93.53
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 93.42
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 93.41
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 93.4
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 93.24
3ocj_A305 Putative exported protein; structural genomics, PS 93.23
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 93.21
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 93.14
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 92.9
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 92.77
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 92.72
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 92.57
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 92.49
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 92.17
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 92.13
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 91.25
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 90.86
1wzn_A252 SAM-dependent methyltransferase; structural genomi 90.48
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 90.47
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 90.46
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 90.27
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 90.27
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 89.74
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 89.74
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 89.08
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 88.8
1vlm_A219 SAM-dependent methyltransferase; possible histamin 88.23
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 88.06
3lcc_A235 Putative methyl chloride transferase; halide methy 87.91
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 87.5
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 87.45
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 87.29
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 87.23
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 87.12
1ri5_A298 MRNA capping enzyme; methyltransferase, M7G, messe 87.11
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 87.05
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 86.62
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 86.55
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 86.49
3i9f_A170 Putative type 11 methyltransferase; structural gen 86.45
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 86.45
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 86.26
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 86.18
2y1w_A348 Histone-arginine methyltransferase CARM1; histone 85.99
3q7e_A349 Protein arginine N-methyltransferase 1; HET: SAH; 85.38
4hg2_A257 Methyltransferase type 11; structural genomics, PS 84.7
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 84.59
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 83.78
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 83.71
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 83.71
1pjz_A203 Thiopurine S-methyltransferase; polymorphism, S-ad 83.63
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 83.24
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 83.01
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 82.86
3cc8_A230 Putative methyltransferase; structural genomics, j 82.47
1g6q_1328 HnRNP arginine N-methyltransferase; SAM-binding do 82.39
1zx0_A236 Guanidinoacetate N-methyltransferase; structural g 81.95
3p2e_A225 16S rRNA methylase; methyltransferase, transferase 81.13
2g72_A289 Phenylethanolamine N-methyltransferase; HET: SAM F 80.25
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.68  E-value=0.00081  Score=66.81  Aligned_cols=167  Identities=17%  Similarity=0.273  Sum_probs=89.7

Q ss_pred             eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559          288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL  367 (561)
Q Consensus       288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V  367 (561)
                      -+|+|+|.|.|.    +...|+++- +.| -.+||||+.+..             -++.+.+++    +..+..-.+..+
T Consensus        72 ~~vLDlGcGtG~----~~~~la~~~-~~~-~~~v~gvD~s~~-------------ml~~A~~~~----~~~~~~~~v~~~  128 (261)
T 4gek_A           72 TQVYDLGCSLGA----ATLSVRRNI-HHD-NCKIIAIDNSPA-------------MIERCRRHI----DAYKAPTPVDVI  128 (261)
T ss_dssp             CEEEEETCTTTH----HHHHHHHTC-CSS-SCEEEEEESCHH-------------HHHHHHHHH----HTSCCSSCEEEE
T ss_pred             CEEEEEeCCCCH----HHHHHHHhc-CCC-CCEEEEEECCHH-------------HHHHHHHHH----HhhccCceEEEe
Confidence            689999999984    556677663 334 589999987532             123333333    334433222223


Q ss_pred             ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEE-EeccCCCCCCCCCChhhHHHH
Q 008559          368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVIL-SENNMDCSCGNCGDFATGFAR  445 (561)
Q Consensus       368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvl-vE~ead~~~~n~~~F~~RF~e  445 (561)
                      .. .+.++.     ..+-.+  |-|.+.|||+.+   ..+..+|+.| |.|+|..+++ +|.-..    ..+.+...+. 
T Consensus       129 ~~-D~~~~~-----~~~~d~--v~~~~~l~~~~~---~~~~~~l~~i~~~LkpGG~lii~e~~~~----~~~~~~~~~~-  192 (261)
T 4gek_A          129 EG-DIRDIA-----IENASM--VVLNFTLQFLEP---SERQALLDKIYQGLNPGGALVLSEKFSF----EDAKVGELLF-  192 (261)
T ss_dssp             ES-CTTTCC-----CCSEEE--EEEESCGGGSCH---HHHHHHHHHHHHHEEEEEEEEEEEEBCC----SSHHHHHHHH-
T ss_pred             ec-cccccc-----cccccc--ceeeeeeeecCc---hhHhHHHHHHHHHcCCCcEEEEEeccCC----CCHHHHHHHH-
Confidence            33 344333     222233  345567899864   3567788877 5599997655 565433    2222222222 


Q ss_pred             HHHHHHHHHhhhhhhcCCCC-hHHhhhheeeeecccccccccccChHHHHHHHhcCCCcccc
Q 008559          446 RVEYLWRFLDSTSAAFKGRE-SEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDV  506 (561)
Q Consensus       446 aL~yY~alfDSLdaa~~~r~-s~eR~~iEivA~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~vp  506 (561)
                      .+.+.+....    .+.+.+ ...|..        ++++ -++.+.+.++.+|+.|||..+.
T Consensus       193 ~~~~~~~~~~----g~s~~ei~~~~~~--------l~~~-~~~~s~~~~~~~L~~AGF~~ve  241 (261)
T 4gek_A          193 NMHHDFKRAN----GYSELEISQKRSM--------LENV-MLTDSVETHKARLHKAGFEHSE  241 (261)
T ss_dssp             HHHHHHHHHT----TGGGSTTHHHHHH--------HHHH-CCCBCHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHc----CCCHHHHHHHHhh--------hccc-ccCCCHHHHHHHHHHcCCCeEE
Confidence            1211111111    111111 111222        2344 5567888999999999998764
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Back     alignment and structure
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Back     alignment and structure
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Back     alignment and structure
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Back     alignment and structure
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Back     alignment and structure
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.42
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.28
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 97.21
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 96.93
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 96.67
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 96.44
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.34
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 96.01
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.96
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 95.93
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 95.85
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 95.49
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 95.17
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 94.51
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 93.96
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 93.62
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 93.51
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 92.18
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 91.95
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 90.17
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 89.47
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 89.18
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 88.58
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 87.42
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 87.41
d2fyta1311 Protein arginine N-methyltransferase 3, PRMT3 {Hum 85.82
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 84.54
d1p91a_268 rRNA methyltransferase RlmA {Escherichia coli [Tax 82.66
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 81.74
d1kpga_285 CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} 80.64
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.42  E-value=0.0015  Score=60.17  Aligned_cols=167  Identities=19%  Similarity=0.272  Sum_probs=89.8

Q ss_pred             eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559          288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL  367 (561)
Q Consensus       288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V  367 (561)
                      -||+|+|.|.|.    +...|+... ..| ..+||||+.+..-             ++.+.+++    +..+....++.+
T Consensus        41 ~~vLDlGCGtG~----~~~~l~~~~-~~~-~~~v~giD~S~~m-------------l~~A~~~~----~~~~~~~~~~~~   97 (225)
T d1im8a_          41 SNVYDLGCSRGA----ATLSARRNI-NQP-NVKIIGIDNSQPM-------------VERCRQHI----AAYHSEIPVEIL   97 (225)
T ss_dssp             CEEEEESCTTCH----HHHHHHHTC-CCS-SCEEEEECSCHHH-------------HHHHHHHH----HTSCCSSCEEEE
T ss_pred             CEEEEeccchhh----HHHHHHHhh-cCC-CCceEEeCCCHHH-------------HHHHHHHh----Hhhcccchhhhc
Confidence            699999999984    445555542 224 6999999885321             22232333    344555555555


Q ss_pred             ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEE-eccCCCCCCCCCChhhHHHH
Q 008559          368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILS-ENNMDCSCGNCGDFATGFAR  445 (561)
Q Consensus       368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlv-E~ead~~~~n~~~F~~RF~e  445 (561)
                      .. ..       +....++.-+|.|.+.|||+..   ..+..+|+.| |.|+|...++. |.-..    ..+.. ..+..
T Consensus        98 ~~-d~-------~~~~~~~~d~i~~~~~l~~~~~---~d~~~~l~~i~~~LkpgG~li~~~~~~~----~~~~~-~~~~~  161 (225)
T d1im8a_          98 CN-DI-------RHVEIKNASMVILNFTLQFLPP---EDRIALLTKIYEGLNPNGVLVLSEKFRF----EDTKI-NHLLI  161 (225)
T ss_dssp             CS-CT-------TTCCCCSEEEEEEESCGGGSCG---GGHHHHHHHHHHHEEEEEEEEEEEECCC----SSHHH-HHHHH
T ss_pred             cc-hh-------hccccccceeeEEeeeccccCh---hhHHHHHHHHHHhCCCCceeeccccccc----ccchh-hhHHH
Confidence            43 22       2233344556777888999864   3456778777 55999986554 44332    22211 11111


Q ss_pred             HHHHHHHHHhhhhhhcCCCC-hHHhhhheeeeecccccccccccChHHHHHHHhcCCCcccc
Q 008559          446 RVEYLWRFLDSTSAAFKGRE-SEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDV  506 (561)
Q Consensus       446 aL~yY~alfDSLdaa~~~r~-s~eR~~iEivA~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~vp  506 (561)
                      .  +|..+....  .+.+.+ ...+.        ....+ -++.+.+.+..+|+.|||..+.
T Consensus       162 ~--~~~~~~~~~--~~~~~~~~~~~~--------~~~~~-~~~~s~~~~~~~L~~aGF~~v~  210 (225)
T d1im8a_         162 D--LHHQFKRAN--GYSELEVSQKRT--------ALENV-MRTDSIETHKVRLKNVGFSQVE  210 (225)
T ss_dssp             H--HHHHHHHHT--TGGGSTTHHHHH--------HHHHH-CCCCCHHHHHHHHHHHTCSEEE
T ss_pred             H--HHHHHHHHc--CCCHHHHHHHHH--------Hhhcc-cCCCCHHHHHHHHHHcCCCceE
Confidence            1  121211111  111110 01111        11223 4667888999999999998764
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure