Citrus Sinensis ID: 008561

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-

MATHRTARTGAPVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA

cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHcccEEEcccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEEcccccccccHHHHccccccccEEEEEEccccccccccccccccHHHHccccccccccccccEEEEHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHccccEEEccccccccccccccccccccccccEEEEEcccccccccccccccHHHHcccccccHHHHHHHcccc

ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHcccccccEEEEEEcccccccccccccHHHHccccccEEEEEcccccccccccccHccccHHHHHHHHHHHHHHHHHcHcccEEEEEcccEEEEEccHHHHEEcccccEccccHcccccHcHHHcEcccccHHHHHcccccHHHHHcccEEEEHHHHHHHcHHHHHHHHHHHccccEEEEcccccccEEEEcccccccccccEEEcccccccccHHHHcccEEEEEccccccHHEEccccccccHHHEcccccHHHHHccccc

mathrtartgapvtgRFTFIMRLLASFITFAVFLFFTSsllftsrshsrdlyssglnsgtyglgsmrrsvlalksdplkprldQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNytdlitkptyqalmqsdsltIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEEriahpekyndegkptpaefedpklyhyaiFSDNVLAASVVVNSAvknskepwkHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLenatkdttnmkfrnpkYLSILNHLRfylpemypKLHRILFLDDDIVVQRDLTGlwkidmdgkvngavETCFGSFHRYAQYmnfshplikakfnpkACAWAygmnffdldAWRREKCTEEYHYWQNLNEnrtlwklgtlppglitfysttkpldkswhvlglgynpsismEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA

mathrtartgapvtgrFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEakesfdnqlkiQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAvknskepwkhVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLenatkdttnmkfrnpKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLwkidmdgkvNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA

MATHRTARTGAPVTGRFTFIMRLLASFItfavflfftssllftsrshsRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPTPAEFEDPKLYHYAIFSDnvlaasvvvnsavknskEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA

***********PVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRS****LY*******TYGL*****************************RALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLME**********************PKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNF**

***************RFTFIMRLLASFITFAVFLFFTSSLLF******************************************IRKQADDHRALAMAYASYARKLKLENSKLVRI**D************************************************AEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEER*********************KLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNF**

*********GAPVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA

***********PVTGRFTFIMRLLASFITFAVFLFFTSSLLFTS***********L***TYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKL*****DTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA

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iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MATHRTARTGAPVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKxxxxxxxxxxxxxxxxxxxxxGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		561	2.2.26 [Sep-21-2011]
Q9LSG3		559	Galacturonosyltransferase	yes	no	0.982	0.985	0.844	0.0
Q9FWA4		561	Probable galacturonosyltr	no	no	0.942	0.942	0.672	0.0
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.784	0.653	0.528	1e-142
Q93ZX7		616	Probable galacturonosyltr	no	no	0.773	0.704	0.491	1e-133
Q0WQD2		680	Probable galacturonosyltr	no	no	0.836	0.689	0.487	1e-130
Q949Q1		537	Probable galacturonosyltr	no	no	0.805	0.841	0.446	1e-119
Q9SKT6		536	Probable galacturonosyltr	no	no	0.809	0.847	0.450	1e-112
Q9ZPZ1		528	Putative galacturonosyltr	no	no	0.755	0.803	0.442	1e-108
Q9FH36		535	Probable galacturonosyltr	no	no	0.741	0.777	0.410	3e-95
Q0WV13		533	Probable galacturonosyltr	no	no	0.721	0.759	0.433	3e-92

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function desciption

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/560 (84%), Positives = 504/560 (90%), Gaps = 9/560 (1%)

Query: 4   HRTARTG---APVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGT 60
           HR  R G   A + GR T    L A   T A+FLF  S    +  + S DL   G+    
Sbjct: 5   HRLLRGGGSPAIIGGRIT----LTAFASTIALFLFTLSFFFASDSNDSPDLLLPGVEYSN 60

Query: 61  YGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADL 120
            G+GS RRS+L +KSDPLKPRL QIRKQADDHR+LA+AYASYARKLKLENSKLVRIFADL
Sbjct: 61  -GVGS-RRSMLDIKSDPLKPRLIQIRKQADDHRSLALAYASYARKLKLENSKLVRIFADL 118

Query: 121 SRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKI 180
           SRNYTDLI KPTY+AL  SD  +I+ES+LRQFEKEVKERIK+TRQ+IAEAKESFDNQLKI
Sbjct: 119 SRNYTDLINKPTYRALYDSDGASIEESVLRQFEKEVKERIKMTRQVIAEAKESFDNQLKI 178

Query: 181 QKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240
           QKLKDTIFAVNEQLT AKKQGAFSSLIAAKSIPK LHCLAMRLMEERIAHPEKY DEGK 
Sbjct: 179 QKLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIAHPEKYTDEGKD 238

Query: 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKL 300
            P E EDP LYHYAIFSDNV+AASVVVNSAVKN+KEPWKHVFHVVTDKMNLGAMQVMFKL
Sbjct: 239 RPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKL 298

Query: 301 KDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPK 360
           K+Y GAH+EVKAVEDY FLNSSYVPVL+QLESANLQ+FYFENKLENATKDTTNMKFRNPK
Sbjct: 299 KEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPK 358

Query: 361 YLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHR 420
           YLSILNHLRFYLPEMYPKLHRILFLDDD+VVQ+DLTGLW+IDMDGKVNGAVETCFGSFHR
Sbjct: 359 YLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAVETCFGSFHR 418

Query: 421 YAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLG 480
           YAQYMNFSHPLIK KFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENR LWKLG
Sbjct: 419 YAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRALWKLG 478

Query: 481 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFK 540
           TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISM+EI+NAAVVHFNGNMKPWLDIAMNQF+
Sbjct: 479 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMNQFR 538

Query: 541 PLWTKYVDYDLDFIQACNFG 560
           PLWTK+VDYDL+F+QACNFG
Sbjct: 539 PLWTKHVDYDLEFVQACNFG 558

Alpha-1-4-D-galacturonosyltransferase involved in homogalacturonan (HGA) synthesis, a class of pectin which plays a role in cell adhesion.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q9FWA4\|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1	Back alignment and function description

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q9SKT6\|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZPZ1\|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1	Back alignment and function description

>sp\|Q9FH36\|GAUTC_ARATH Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1	Back alignment and function description

>sp\|Q0WV13\|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		561
255583974		566	Glycosyltransferase QUASIMODO1, putative	0.991	0.982	0.880	0.0
224065409		554	glycosyltransferase, CAZy family GT8 [Po	0.985	0.998	0.876	0.0
118481221		554	unknown [Populus trichocarpa]	0.985	0.998	0.875	0.0
359495836		558	PREDICTED: galacturonosyltransferase 8-l	0.989	0.994	0.853	0.0
297790390		559	hypothetical protein ARALYDRAFT_497166 [	0.994	0.998	0.841	0.0
15230806		559	Galacturonosyltransferase 8 [Arabidopsis	0.982	0.985	0.844	0.0
356567810		556	PREDICTED: galacturonosyltransferase 8-l	0.985	0.994	0.836	0.0
296084616		503	unnamed protein product [Vitis vinifera]	0.852	0.950	0.865	0.0
449464114		566	PREDICTED: galacturonosyltransferase 8-l	0.966	0.957	0.828	0.0
363807236		547	uncharacterized protein LOC100817076 [Gl	0.969	0.994	0.802	0.0

>gi\|255583974\|ref\|XP_002532733.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi\|223527510\|gb\|EEF29635.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/559 (88%), Positives = 521/559 (93%), Gaps = 3/559 (0%)

Query: 4   HRTARTGAPVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHS-RDLYSS-GLNSGTY 61
           HR++     +   F+   R+L S IT AV +FFT + LFTS SHS  DL+ + GL +  Y
Sbjct: 8   HRSSSRNGLIRS-FSVSFRVLGSAITIAVLVFFTVAFLFTSDSHSPSDLHRNFGLGNVPY 66

Query: 62  GLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLS 121
           G GS RRSVLALKSDPLKPRLDQIRKQADDHR+LA+AYASYARKLKLENSKLVR+FADLS
Sbjct: 67  GFGSGRRSVLALKSDPLKPRLDQIRKQADDHRSLALAYASYARKLKLENSKLVRVFADLS 126

Query: 122 RNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQ 181
           RNYTDLI KP Y+AL +SDSL+I+ES LRQFEKEVKERIK+TRQIIAEAKESFDNQLKIQ
Sbjct: 127 RNYTDLINKPAYRALFESDSLSIEESTLRQFEKEVKERIKVTRQIIAEAKESFDNQLKIQ 186

Query: 182 KLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPT 241
           KLKDTIFAVNEQL+KAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKY DEGKP 
Sbjct: 187 KLKDTIFAVNEQLSKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYTDEGKPL 246

Query: 242 PAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLK 301
             E EDPKLYHYAIFSDNV+AASVVVNSAVKN+KEPWKHVFHVVTDKMNLGAMQVMFKLK
Sbjct: 247 APELEDPKLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLK 306

Query: 302 DYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKY 361
           DYNGAH+EVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKY
Sbjct: 307 DYNGAHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKY 366

Query: 362 LSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRY 421
           LSILNHLRFYLPEMYPKLHRILFLDDDIVVQ+DLTGLWKIDMDGKVNGAVETCFGSFHRY
Sbjct: 367 LSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRY 426

Query: 422 AQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGT 481
           AQYMNFSHPLIK KFNPKACAWAYGMNFFDLDAWR+EKCTE+YHYWQNLNENRTLWKLGT
Sbjct: 427 AQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRKEKCTEQYHYWQNLNENRTLWKLGT 486

Query: 482 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKP 541
           LPPGLITFYSTTKPLDKSWHVLGLGYNPSISM+EI+NAAVVHFNGNMKPWLDIAM QFKP
Sbjct: 487 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMTQFKP 546

Query: 542 LWTKYVDYDLDFIQACNFG 560
           LWTK+VDYDLDF+QACNFG
Sbjct: 547 LWTKHVDYDLDFVQACNFG 565

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224065409\|ref\|XP_002301803.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi\|222843529\|gb\|EEE81076.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118481221\|gb\|ABK92560.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359495836\|ref\|XP_002273962.2\| PREDICTED: galacturonosyltransferase 8-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297790390\|ref\|XP_002863088.1\| hypothetical protein ARALYDRAFT_497166 [Arabidopsis lyrata subsp. lyrata] gi\|297308906\|gb\|EFH39347.1\| hypothetical protein ARALYDRAFT_497166 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15230806|ref|NP_189150.1| Galacturonosyltransferase 8 [Arabidopsis thaliana] gi|26398609|sp|Q9LSG3.1|GAUT8_ARATH RecName: Full=Galacturonosyltransferase 8; AltName: Full=Glycosyltransferase QUASIMODO1 gi|9294170|dbj|BAB02072.1| unnamed protein product [Arabidopsis thaliana] gi|20466217|gb|AAM20426.1| glycosyl transferase, putative [Arabidopsis thaliana] gi|34098907|gb|AAQ56836.1| At3g25140 [Arabidopsis thaliana] gi|332643462|gb|AEE76983.1| Galacturonosyltransferase 8 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356567810\|ref\|XP_003552108.1\| PREDICTED: galacturonosyltransferase 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|296084616\|emb\|CBI25666.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449464114\|ref\|XP_004149774.1\| PREDICTED: galacturonosyltransferase 8-like [Cucumis sativus] gi\|449527685\|ref\|XP_004170840.1\| PREDICTED: galacturonosyltransferase 8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|363807236\|ref\|NP_001242612.1\| uncharacterized protein LOC100817076 [Glycine max] gi\|255641059\|gb\|ACU20809.1\| unknown [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		561
TAIR\|locus:2090210		559	QUA1 "QUASIMODO 1" [Arabidopsi	0.907	0.910	0.863	1.3e-244
TAIR\|locus:2074572		561	GAUT9 "galacturonosyltransfera	0.885	0.885	0.696	4.8e-197
TAIR\|locus:2098836		673	GAUT1 "galacturonosyltransfera	0.782	0.652	0.501	1.3e-126
TAIR\|locus:2160957		616	GAUT4 "galacturonosyltransfera	0.713	0.649	0.504	8.2e-115
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.836	0.689	0.463	2.8e-114
TAIR\|locus:2027453		537	GAUT11 "galacturonosyltransfer	0.805	0.841	0.422	4.6e-105
TAIR\|locus:2051426		536	GAUT10 "galacturonosyltransfer	0.809	0.847	0.431	2.9e-103
TAIR\|locus:2039934		528	GAUT2 "galacturonosyltransfera	0.543	0.577	0.381	1.6e-100
TAIR\|locus:2102082		533	GAUT13 "galacturonosyltransfer	0.648	0.682	0.437	8e-85
TAIR\|locus:2157543		535	GAUT12 "galacturonosyltransfer	0.677	0.710	0.417	4e-83

TAIR\|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2357 (834.8 bits), Expect = 1.3e-244, P = 1.3e-244
 Identities = 441/511 (86%), Positives = 466/511 (91%)

Query:    50 DLYSSGLNSGTYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLE 109
             DL   G+     G+GS RRS+L +KSDPLKPRL QIRKQADDHR+LA+AYASYARKLKLE
Sbjct:    50 DLLLPGVEYSN-GVGS-RRSMLDIKSDPLKPRLIQIRKQADDHRSLALAYASYARKLKLE 107

Query:   110 NSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAE 169
             NSKLVRIFADLSRNYTDLI KPTY+AL  SD  +I+ES+LRQFEKEVKERIK+TRQ+IAE
Sbjct:   108 NSKLVRIFADLSRNYTDLINKPTYRALYDSDGASIEESVLRQFEKEVKERIKMTRQVIAE 167

Query:   170 AKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIA 229
             AKESFDNQLKIQKLKDTIFAVNEQLT AKKQGAFSSLIAAKSIPK LHCLAMRLMEERIA
Sbjct:   168 AKESFDNQLKIQKLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIA 227

Query:   230 HPEKYNDEGKPTPAEFEDPKLYHYAIFSDXXXXXXXXXXXXXXXXXEPWKHVFHVVTDKM 289
             HPEKY DEGK  P E EDP LYHYAIFSD                 EPWKHVFHVVTDKM
Sbjct:   228 HPEKYTDEGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKM 287

Query:   290 NLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATK 349
             NLGAMQVMFKLK+Y GAH+EVKAVEDY FLNSSYVPVL+QLESANLQ+FYFENKLENATK
Sbjct:   288 NLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATK 347

Query:   350 DTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNG 409
             DTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDD+VVQ+DLTGLW+IDMDGKVNG
Sbjct:   348 DTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNG 407

Query:   410 AVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQN 469
             AVETCFGSFHRYAQYMNFSHPLIK KFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQN
Sbjct:   408 AVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQN 467

Query:   470 LNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMK 529
             LNENR LWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISM+EI+NAAVVHFNGNMK
Sbjct:   468 LNENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 527

Query:   530 PWLDIAMNQFKPLWTKYVDYDLDFIQACNFG 560
             PWLDIAMNQF+PLWTK+VDYDL+F+QACNFG
Sbjct:   528 PWLDIAMNQFRPLWTKHVDYDLEFVQACNFG 558

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0010289 "homogalacturonan biosynthetic process" evidence=IMP

GO:0045489 "pectin biosynthetic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157543 GAUT12 "galacturonosyltransferase 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSG3	GAUT8_ARATH	2, ., 4, ., 1, ., -	0.8446	0.9821	0.9856	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		561
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	0.0
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	0.0
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	0.0
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-175
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	1e-130
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	1e-127
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	1e-126
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	1e-119
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	1e-105
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	7e-90
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	3e-69
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	2e-15
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	2e-14
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	3e-07

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

 Score = 1090 bits (2820), Expect = 0.0
 Identities = 456/561 (81%), Positives = 497/561 (88%), Gaps = 5/561 (0%)

Query: 1   MATHRTARTGAPVTG-RFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSG 59
              HR  R G    G R  F  R+LAS I   +FL  TS LL TS               
Sbjct: 2   AVAHRGGRGGGGPGGLRSFFSYRILASAIFLFLFLATTSVLLNTSPHPP----HHDHLLP 57

Query: 60  TYGLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFAD 119
           + G    +R+ LALKSDPLK RLDQIRKQADDHR L  AYA+YARKLKL+NSKL+R+FAD
Sbjct: 58  SSGNAYGQRTFLALKSDPLKTRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFAD 117

Query: 120 LSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLK 179
           LSRN+TDLI+KP+Y+AL+ SD   IDE +LRQFEKEVKER+K+ RQ+IAE+KESFDNQLK
Sbjct: 118 LSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERVKVARQMIAESKESFDNQLK 177

Query: 180 IQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGK 239
           IQKLKDTIFAVNEQLTKAKK GAF+SLIAAKSIPKSLHCLAMRLMEERIAHPEKY DEGK
Sbjct: 178 IQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGK 237

Query: 240 PTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFK 299
           P P E EDP LYHYAIFSDNV+AASVVVNSAVKN+KEPWKHVFHVVTD+MNL AM+VMFK
Sbjct: 238 PPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFK 297

Query: 300 LKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNP 359
           ++D NGAH+EVKAVEDYKFLNSSYVPVLRQLESANLQ+FYFENKLENATKD++NMKFRNP
Sbjct: 298 MRDLNGAHVEVKAVEDYKFLNSSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNP 357

Query: 360 KYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFH 419
           KYLS+LNHLRFYLPEMYPKLHRILFLDDD+VVQ+DLTGLWKIDMDGKVNGAVETCFGSFH
Sbjct: 358 KYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFH 417

Query: 420 RYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKL 479
           RYAQY+NFSHPLIK KFNPKACAWAYGMN FDLDAWRREKCTE+YHYWQNLNENRTLWKL
Sbjct: 418 RYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWKL 477

Query: 480 GTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQF 539
           GTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISM+EI+NAAV+HFNGNMKPWLDIAMNQF
Sbjct: 478 GTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQF 537

Query: 540 KPLWTKYVDYDLDFIQACNFG 560
           KPLWTKYVDYD++F+QACNFG
Sbjct: 538 KPLWTKYVDYDMEFVQACNFG 558

Length = 559

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		561
PLN02523		559	galacturonosyltransferase	100.0
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	100.0
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	100.0
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.94
PLN00176		333	galactinol synthase	99.93
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.76
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	99.36
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	98.08
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	96.0
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	90.88
PF11051		271	Mannosyl_trans3: Mannosyltransferase putative; Int	86.51
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	83.47

>PLN02523 galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=1.6e-141  Score=1139.31  Aligned_cols=551  Identities=82%  Similarity=1.292  Sum_probs=517.0

Q ss_pred             ccCCCCC---CCcccchhhhhhhhhhhhhhhhhhhhhccchhccccCCccccccCCCCCcccCCcccceeeeecCCCCcc
Q 008561            4 HRTARTG---APVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKP   80 (561)
Q Consensus         4 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (561)
                      +||+|||   +++|++++  .|+++|++... +|+++.++++++   ++++++++...+..|.+|++||+|||||||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (559)
T PLN02523          5 HRGGRGGGGPGGLRSFFS--YRILASAIFLF-LFLATTSVLLNT---SPHPPHHDHLLPSSGNAYGQRTFLALKSDPLKT   78 (559)
T ss_pred             hhcccCCCCCcccccchh--HHHHHHHHHHH-HHHHHHHHHHcC---CCCCcccccccccccccccccccccccCCcchh
Confidence            4666664   45787766  67777776544 445555666665   556667888888888889999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHH
Q 008561           81 RLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERI  160 (561)
Q Consensus        81 ~~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (561)
                      |+|.|+||+.||++|+.||+++||||++|.|+|+|.|.+|++|+++|++||+++.++++++.++++++++||++++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (559)
T PLN02523         79 RLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERV  158 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCCCCCC
Q 008561          161 KLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP  240 (561)
Q Consensus       161 ~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~~~~~  240 (561)
                      |.|+++|++||+.|||+++++|||+|++++|||++++|+|++|++||||+|+|||||||+||||+|||++++++++.+++
T Consensus       159 k~~~~~~~~a~~~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~  238 (559)
T PLN02523        159 KVARQMIAESKESFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKP  238 (559)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887665667


Q ss_pred             CCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEeccccccc
Q 008561          241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN  320 (561)
Q Consensus       241 ~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~  320 (561)
                      ++++++||+++|||++||||+|++|+|+|++.|+++|++++||||||++++++|++||.++++++++|+|++|++|+|++
T Consensus       239 ~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln  318 (559)
T PLN02523        239 PPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLN  318 (559)
T ss_pred             cchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhc
Q 008561          321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK  400 (561)
Q Consensus       321 ~~~~Pvl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~  400 (561)
                      .+|+||++|++++.++.+||+++..+...+..++++++|+|+|+++|+|||||++||+++||||||+||||++||++||+
T Consensus       319 ~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~  398 (559)
T PLN02523        319 SSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK  398 (559)
T ss_pred             cccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence            99999999999999999999976655555567899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcC
Q 008561          401 IDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLG  480 (561)
Q Consensus       401 lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd  480 (561)
                      +||+|+++|||+||...++++.++++|++|.++.+||++.||||+|||||||++||++++|++++.|++.+.+..+||||
T Consensus       399 iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~Dqd  478 (559)
T PLN02523        399 IDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWKLG  478 (559)
T ss_pred             CcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhcccccccccc
Confidence            99999999999999766788888999999999989999999999999999999999999999999898887788999999


Q ss_pred             CCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhHhhccCC
Q 008561          481 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFG  560 (561)
Q Consensus       481 ~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l~~cn~~  560 (561)
                      +|||+|++|+|+|++||++||++++||++.++.+.+++|+||||+|++|||++.++++|+++|++|++++++||++|||+
T Consensus       479 aLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~Cn~~  558 (559)
T PLN02523        479 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQACNFG  558 (559)
T ss_pred             ccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhCCCC
Confidence            99999999999999999999999999998888888999999999999999999999999999999999999999999997

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		561
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	8e-58
3tzt_A		276	Glycosyl transferase family 8; structural genomics	2e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	3e-04

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  194 bits (495), Expect = 8e-58
 Identities = 49/309 (15%), Positives = 88/309 (28%), Gaps = 62/309 (20%)

Query: 256 FSDN-VLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVE 314
             DN      V   S      +  +  FHV+   ++      +       G +I    V 
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDT-EIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN 65

Query: 315 DYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPE 374
              F                                       N +++SI  + R  L E
Sbjct: 66  PEDFAGFPL----------------------------------NIRHISITTYARLKLGE 91

Query: 375 MYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAV-ETCFGSFHRYAQYMNFSHPLIK 433
                 ++L+LD D++V+  LT LW  D+     GA  +        Y Q +  +     
Sbjct: 92  YIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG--- 148

Query: 434 AKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTT 493
                    +  G+   +L  WRR    +    W    ++   ++   +  GL  F    
Sbjct: 149 ------EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGV 200

Query: 494 KPLDKSWHVLGLGYNPSIS--------------MEEIQNAAVVHFNGNMKPWLDIAMNQF 539
              +  ++ +   Y    +                 +   AV H+ G  KPW        
Sbjct: 201 CYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWG 260

Query: 540 KPLWTKYVD 548
              +T+   
Sbjct: 261 AERFTELAG 269

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		561
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.94
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.92

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=5.5e-47  Score=384.48  Aligned_cols=256  Identities=16%  Similarity=0.188  Sum_probs=193.6

Q ss_pred             eeEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHH
Q 008561          250 LYHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL  327 (561)
Q Consensus       250 ~iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl  327 (561)
                      .+|||+++|+ + .+++|+|+|++.|+++ ++++|||++++++.+..+.+..+....+.+|+++.+++ +++        
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~--------   74 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLF--------   74 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHH--------
Confidence            4899999995 5 5799999999999986 68999999999999888877776666677888776643 111        


Q ss_pred             HhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcc-cCCeEEEeecCeeEecCchhhhccCCCCC
Q 008561          328 RQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYP-KLHRILFLDDDIVVQRDLTGLWKIDMDGK  406 (561)
Q Consensus       328 ~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP-~ldKVLYLD~DvIV~~DLseLw~lDL~gk  406 (561)
                                   .+             ++..+++|..+|+||++|+++| +++||||||+|+||++||++||++|++|+
T Consensus        75 -------------~~-------------~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~  128 (276)
T 3tzt_A           75 -------------SF-------------AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDY  128 (276)
T ss_dssp             -----------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTS
T ss_pred             -------------hc-------------CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCC
Confidence                         10             0112457899999999999999 59999999999999999999999999999


Q ss_pred             EEEEEecCccC-ccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCCh
Q 008561          407 VNGAVETCFGS-FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPP  484 (561)
Q Consensus       407 viaAV~d~~~~-~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~  484 (561)
                      ++|||+||... +.+....         .++++..||||||||||||++||+.++++++.+|++.+.. ..+.|||+|| 
T Consensus       129 ~~aav~d~~~~~~~~~~~~---------~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN-  198 (276)
T 3tzt_A          129 ILAAASHTGKTDMANNVNR---------IRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILN-  198 (276)
T ss_dssp             SEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHH-
T ss_pred             eEEEEEecccchHHHHHHH---------hcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHH-
Confidence            99999999753 1111111         1344446999999999999999999999999999987653 3567999999 


Q ss_pred             hhhccCCceeecCC-ccccccCCCCC--------CCC-hhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhH
Q 008561          485 GLITFYSTTKPLDK-SWHVLGLGYNP--------SIS-MEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFI  554 (561)
Q Consensus       485 ~li~f~g~i~~Ld~-~WN~~~lgy~~--------~i~-~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l  554 (561)
                        ++|.|+|++||. +||++.. +..        ..+ .+..++|+||||+|+.|||...+.++|+++||+|.+...++|
T Consensus       199 --~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          199 --AMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             --HHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             --HHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence              699999999998 9999873 210        111 124678999999999999999999999999999999988876

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		561
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	1e-29
d1ll2a_		263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	5e-07

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  115 bits (289), Expect = 1e-29
 Identities = 50/314 (15%), Positives = 91/314 (28%), Gaps = 60/314 (19%)

Query: 256 FSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVED 315
             DN  A   V   +V+ +    +  FHV+   ++      +       G +I    V  
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP 66

Query: 316 YKFLNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEM 375
             F                                       N +++SI  + R  L E 
Sbjct: 67  EDFAG----------------------------------FPLNIRHISITTYARLKLGEY 92

Query: 376 YPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAV-ETCFGSFHRYAQYMNFSHPLIKA 434
                ++L+LD D++V+  LT LW  D+     GA  +        Y Q +  +      
Sbjct: 93  IADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGE--- 149

Query: 435 KFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTK 494
                   +  G+   +L  WRR    +    W    ++   ++   +  GL  F     
Sbjct: 150 ------YYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGVC 201

Query: 495 PLDKSWHVLGLGYNPSISM--------------EEIQNAAVVHFNGNMKPWLDIAMNQFK 540
             +  ++ +   Y    +                 +   AV H+ G  KPW         
Sbjct: 202 YANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGA 261

Query: 541 PLWTKYVDYDLDFI 554
             +T+         
Sbjct: 262 ERFTELAGSLTTVP 275

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		561
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.92
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	91.23
d1lzia_		283	Glycosyltransferase A catalytic domain {Human (Hom	89.77

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=9.1e-44  Score=355.53  Aligned_cols=255  Identities=19%  Similarity=0.240  Sum_probs=204.3

Q ss_pred             eEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHH
Q 008561          251 YHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLR  328 (561)
Q Consensus       251 iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~  328 (561)
                      +|||+++|+ + .+++|+|+|++.++++ .+++|||++++++.+..+.+.......++.|.++.+++-.+          
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~----------   69 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDF----------   69 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGG----------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHh----------
Confidence            689999994 5 5799999999999876 68999999999999988888776655677777766542111          


Q ss_pred             hhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEE
Q 008561          329 QLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVN  408 (561)
Q Consensus       329 ~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkvi  408 (561)
                                  ..           .. ...+++|.++|+||++|++||+++||||||+||||++||++||++|++++.+
T Consensus        70 ------------~~-----------~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~  125 (282)
T d1ga8a_          70 ------------AG-----------FP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWL  125 (282)
T ss_dssp             ------------TT-----------SC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSE
T ss_pred             ------------cc-----------cc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhccccccee
Confidence                        10           00 1235689999999999999999999999999999999999999999999999


Q ss_pred             EEEecCccCc-cchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCChhh
Q 008561          409 GAVETCFGSF-HRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPPGL  486 (561)
Q Consensus       409 aAV~d~~~~~-~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~~l  486 (561)
                      |||.|+.... ..+...+         ++.++.+||||||||||+++||+.++++++.++++.+.. ..++|||+||   
T Consensus       126 aa~~d~~~~~~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN---  193 (282)
T d1ga8a_         126 GASIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN---  193 (282)
T ss_dssp             EEEECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHHHH---
T ss_pred             eeehhhhhhhhhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcccCchhHHH---
Confidence            9999975321 1122222         344578999999999999999999999999999877643 4678999999   


Q ss_pred             hccCCceeecCCccccccCCCCCC--------CC------hhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChh
Q 008561          487 ITFYSTTKPLDKSWHVLGLGYNPS--------IS------MEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLD  552 (561)
Q Consensus       487 i~f~g~i~~Ld~~WN~~~lgy~~~--------i~------~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~  552 (561)
                      ++|.|++..||.+||++..+|...        ..      .+...+++||||+|+.|||...+.+++.+.|++|....+.
T Consensus       194 ~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~~~  273 (282)
T d1ga8a_         194 GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTT  273 (282)
T ss_dssp             HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTCSC
T ss_pred             HHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhhhc
Confidence            689999999999999986432110        00      1235789999999999999999989999999999887654

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure