Citrus Sinensis ID: 008583

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
MYRPVATATPRGGLPSDSGDSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPKAPVEPPVSDVGLIRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP
cccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEccccccccccccHHHHHcccHHHHHHHHHccccccccEEEccccccccccEEEccccEEccccccHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccHHHHccccccccccccccHHcccccccHHHHHHHHHHHHHHcccccHHcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHccEEEEcccccccccEEEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccccccEEEEcccHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccc
cccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccEEEEEccccEEEEHEEEEccHHHHcccccccHHHHHccHHHHHHHHHccccccccEEEccccccccEEEEEEccccEccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHccccHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHccEEEEccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHHcHHHHHHHcEEEEEcHHHHHHHHHHHHHHccccHHHHHEEEcHHHHHHHHHccHHHcccccHEEEccHHccccccEEcccccccccccc
myrpvatatprgglpsdsgdsvvtldqvprwsdaehrlsldyesedpsfsnsyfadplasssgaessgngmvsrfpvdheinskiylwrgnpwnleVDTVVNSTnenldeahsspglhaaagpglaeecatlggcrtgmakvtnaydlparrvihtvgpkyaVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYteaknyprepaaHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLlplyfprdkheeEVAIsklpadvgdengetiiderkirikplpkknipkppkapveppvsdvglirrnssyldsyldpafmslikdpdqRRKEQWEKTAQAQSgwncakmlgfgdlggpplsaaeEYSLHSRYLAKANSLNLSEIAEMKIvyrggvdsegrpVMVVVGAHFLLRCLDLERFVLYVVKefepliqkpysivyfhsaaslqlqpdlgWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFryvpreqltipdfvfqhdlevnggkglivdprtkyvyqrp
myrpvatatprgglpsdsgdsvvTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVtnaydlparrVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLekqkdkisavvfctttasdteiyKRLLPLYFPRDKHEEEVaisklpadvgdengetiiderkirikplpkknipkppkapveppvsdvglIRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFqhdlevnggkglivdprtkyvyqrp
MYRPVATATPRGGLPSDSGDSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLasssgaessgNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSpglhaaagpglaEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERkirikplpkknipkppkapveppvSDVGLIRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLvdnvvwkkvvyvdRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP
**************************************************************************FPVDHEINSKIYLWRGNPWNLEVDTVVN*********************GLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRD*******************************************************LIRRNSSYLDSYLDPAFMSLI******************SGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVY***
*********************VVTLDQVPRWSDAEH***************SYFADP******************PVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDKH*************************************************************************************************************************RYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHD**********************
**************PSDSGDSVVTLDQVPRWSDAEHRLSL********FSNSYFADP*************MVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPKAPVEPPVSDVGLIRRNSSYLDSYLDPAFMSLIKDP***************SGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP
******T***RGGLPSDSGDSVVTLDQVPRWS*****************************************RFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERKIRIKPL********************************YLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKY*****
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MYRPVATATPRGGLPSDSGDSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPKAPVEPPVSDVGLIRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query560 2.2.26 [Sep-21-2011]
A7T167502 Protein GDAP2 homolog OS= N/A no 0.801 0.894 0.364 3e-87
Q5CZL1496 Ganglioside-induced diffe yes no 0.858 0.969 0.349 3e-82
Q5XGM5496 Ganglioside-induced diffe N/A no 0.789 0.891 0.364 5e-80
Q66HX8504 Ganglioside-induced diffe yes no 0.778 0.865 0.368 2e-79
Q66H63497 Ganglioside-induced diffe yes no 0.832 0.937 0.359 2e-78
Q2KIX2497 Ganglioside-induced diffe yes no 0.833 0.939 0.352 4e-78
Q9NXN4497 Ganglioside-induced diffe yes no 0.830 0.935 0.357 5e-78
Q9DBL2498 Ganglioside-induced diffe yes no 0.833 0.937 0.349 5e-77
Q4R678461 Ganglioside-induced diffe N/A no 0.746 0.906 0.358 4e-73
Q7JUR6540 Protein GDAP2 homolog OS= yes no 0.816 0.846 0.334 2e-67
>sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1 Back     alignment and function desciption
 Score =  323 bits (827), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/485 (36%), Positives = 273/485 (56%), Gaps = 36/485 (7%)

Query: 65  ESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENL-DEAHSSPGLHAAAGP 123
           ES  +  +S FPVD EIN+K+ LW G+   L  D +VN+TNE+L D    S  +H AAGP
Sbjct: 33  ESQSSSFLSPFPVDEEINAKVVLWNGDITKLAADAIVNTTNESLSDRGALSERVHRAAGP 92

Query: 124 GLAEEC-ATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLE 182
            L +EC   L GCRTG AK++  Y+LPAR VIHTVGP+Y  KY TAAE+AL  CYR+ + 
Sbjct: 93  ELMQECRQQLLGCRTGEAKISEGYNLPARYVIHTVGPRYNTKYKTAAESALFSCYRNTMR 152

Query: 183 LLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242
           L+ EN + +I +  + T  + YP E  AH+A+RTVRRFLEK    +  V F    A +  
Sbjct: 153 LVRENKISTIGVCVVNTTKRGYPPEDGAHIALRTVRRFLEKYGSAVDTVAFVVEGA-EAV 211

Query: 243 IYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPKAPV 302
           +Y +++P+YFPRDK EE  A++ +P D+G+E GE II ER+IRI       +PKPP    
Sbjct: 212 VYAKVMPIYFPRDKLEEAHALTLMPDDIGNEEGEPIIPERQIRI-------VPKPPSLQH 264

Query: 303 EPPVSDVGLIRRNSSYLD----SYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKML 358
                DV        +LD         AF  +  D DQ  K++  ++             
Sbjct: 265 G---EDVEEAEEAEGHLDMTELHVGKHAFAVMAGDHDQMTKQRAHRSDDG---------- 311

Query: 359 GFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHF 418
                    +   E+  ++ R+L +A + N ++ +  KI+Y+ GVD  GRPV+V V  HF
Sbjct: 312 ---------MKVVEQQRVYQRWLRRARTENFADFSRQKILYQSGVDFLGRPVVVFVARHF 362

Query: 419 LLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRN 478
             +  DL + V Y +   + ++ + Y +VYFH+ ++ + QP + +++ L  ++  K++RN
Sbjct: 363 TAQNTDLGKAVAYFISVLDRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRN 422

Query: 479 LHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHD 538
           L A Y++HPT   +   +       + V +KV ++  +  L+ ++  +QL IP +V ++D
Sbjct: 423 LKAFYIVHPTVWARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYD 482

Query: 539 LEVNG 543
           ++ NG
Sbjct: 483 MKENG 487

Nematostella vectensis (taxid: 45351)
>sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1 Back     alignment and function description
>sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1 Back     alignment and function description
>sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1 Back     alignment and function description
>sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1 Back     alignment and function description
>sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1 Back     alignment and function description
>sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
255564879561 ganglioside induced differentiation asso 0.991 0.989 0.911 0.0
224108916561 predicted protein [Populus trichocarpa] 1.0 0.998 0.896 0.0
225423545560 PREDICTED: protein GDAP2 homolog [Vitis 1.0 1.0 0.907 0.0
224101427561 predicted protein [Populus trichocarpa] 1.0 0.998 0.884 0.0
297738052561 unnamed protein product [Vitis vinifera] 1.0 0.998 0.905 0.0
449452092559 PREDICTED: protein GDAP2 homolog [Cucumi 0.971 0.973 0.887 0.0
297838695562 appr-1-p processing enzyme family protei 1.0 0.996 0.864 0.0
297838697 1347 hypothetical protein ARALYDRAFT_476061 [ 0.992 0.412 0.861 0.0
12597804561 unknown protein [Arabidopsis thaliana] g 1.0 0.998 0.859 0.0
18409248562 appr-1-p processing enzyme-like protein 1.0 0.996 0.859 0.0
>gi|255564879|ref|XP_002523433.1| ganglioside induced differentiation associated protein, putative [Ricinus communis] gi|223537323|gb|EEF38953.1| ganglioside induced differentiation associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/555 (91%), Positives = 528/555 (95%)

Query: 6   ATATPRGGLPSDSGDSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAE 65
            T T RGG P+D+GDSVVTLDQVPRWSDAE RLS  Y+++DPSFSNSYF DPL      E
Sbjct: 7   TTTTTRGGSPTDNGDSVVTLDQVPRWSDAESRLSFGYDNDDPSFSNSYFPDPLTCPVEGE 66

Query: 66  SSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGL 125
           SSG+GM+SRFPVDH+INSKIYLWRGNPWNLEVD VVNSTNENLDEAHSSPGLHAAAGPGL
Sbjct: 67  SSGSGMISRFPVDHDINSKIYLWRGNPWNLEVDAVVNSTNENLDEAHSSPGLHAAAGPGL 126

Query: 126 AEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLI 185
           AEEC+TLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLI
Sbjct: 127 AEECSTLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLI 186

Query: 186 ENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYK 245
           ENGL+SIA+GCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKI AVVFCTTT  DTEIYK
Sbjct: 187 ENGLRSIAVGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKIKAVVFCTTTTMDTEIYK 246

Query: 246 RLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPKAPVEPP 305
           RLLPLYFPRDKHEEEVAI+KLP+DVGDENGETIIDERKIRIKPLPKK IPKPP+A  + P
Sbjct: 247 RLLPLYFPRDKHEEEVAIAKLPSDVGDENGETIIDERKIRIKPLPKKTIPKPPQAEADLP 306

Query: 306 VSDVGLIRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLGFGDLGG 365
           VS+VGL+RRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAK+LGFG+LGG
Sbjct: 307 VSNVGLVRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKLLGFGNLGG 366

Query: 366 PPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDL 425
           PPLS AEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDL
Sbjct: 367 PPLSVAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDL 426

Query: 426 ERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVL 485
           ERFVLYVVKEFEPLIQKPY+IVYFHSAASLQLQPDLGWMRRLQQ+LGRKHQRNLHAIYVL
Sbjct: 427 ERFVLYVVKEFEPLIQKPYTIVYFHSAASLQLQPDLGWMRRLQQILGRKHQRNLHAIYVL 486

Query: 486 HPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGK 545
           HPTFHLKATI  LQLLVDNV WKKVVYVDRLLQLFR+VPREQLTIPDFVFQHDLEVNGGK
Sbjct: 487 HPTFHLKATILALQLLVDNVTWKKVVYVDRLLQLFRHVPREQLTIPDFVFQHDLEVNGGK 546

Query: 546 GLIVDPRTKYVYQRP 560
           GLIVDPRTKYVY RP
Sbjct: 547 GLIVDPRTKYVYHRP 561

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108916|ref|XP_002315014.1| predicted protein [Populus trichocarpa] gi|222864054|gb|EEF01185.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423545|ref|XP_002272103.1| PREDICTED: protein GDAP2 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101427|ref|XP_002312275.1| predicted protein [Populus trichocarpa] gi|222852095|gb|EEE89642.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738052|emb|CBI27253.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452092|ref|XP_004143794.1| PREDICTED: protein GDAP2 homolog [Cucumis sativus] gi|449486505|ref|XP_004157317.1| PREDICTED: protein GDAP2 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297838695|ref|XP_002887229.1| appr-1-p processing enzyme family protein [Arabidopsis lyrata subsp. lyrata] gi|297333070|gb|EFH63488.1| appr-1-p processing enzyme family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp. lyrata] gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|12597804|gb|AAG60116.1|AC073178_27 unknown protein [Arabidopsis thaliana] gi|15912225|gb|AAL08246.1| At1g69340/F10D13.28 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18409248|ref|NP_564960.1| appr-1-p processing enzyme-like protein [Arabidopsis thaliana] gi|13937139|gb|AAK50063.1|AF372923_1 At1g69340/F10D13.28 [Arabidopsis thaliana] gi|27363414|gb|AAO11626.1| At1g69340/F10D13.28 [Arabidopsis thaliana] gi|332196792|gb|AEE34913.1| appr-1-p processing enzyme-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
TAIR|locus:2007206562 AT1G69340 "AT1G69340" [Arabido 1.0 0.996 0.784 1.4e-238
ZFIN|ZDB-GENE-040912-31504 gdap2 "ganglioside induced dif 0.380 0.422 0.427 6.8e-69
RGD|1306050497 Gdap2 "ganglioside-induced dif 0.371 0.418 0.429 2.9e-68
UNIPROTKB|Q66H63497 Gdap2 "Ganglioside-induced dif 0.371 0.418 0.429 2.9e-68
UNIPROTKB|E2RCF0497 GDAP2 "Uncharacterized protein 0.378 0.426 0.430 6e-68
UNIPROTKB|F1SAY8497 GDAP2 "Uncharacterized protein 0.371 0.418 0.429 1.2e-67
MGI|MGI:1338001498 Gdap2 "ganglioside-induced dif 0.371 0.417 0.424 1.2e-67
UNIPROTKB|Q2KIX2497 GDAP2 "Ganglioside-induced dif 0.416 0.468 0.4 1.6e-67
UNIPROTKB|Q9NXN4497 GDAP2 "Ganglioside-induced dif 0.371 0.418 0.424 1.6e-67
UNIPROTKB|E1C8K9496 GDAP2 "Uncharacterized protein 0.371 0.419 0.419 1.6e-67
TAIR|locus:2007206 AT1G69340 "AT1G69340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2300 (814.7 bits), Expect = 1.4e-238, P = 1.4e-238
 Identities = 440/561 (78%), Positives = 477/561 (85%)

Query:     1 MYRPVATA-TPRGGLPSDSGDSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLX 59
             MY+ + TA T RGG P++SGD VVTLDQ+PRWSD E R SL+ E+ DP  SN  +A+PL 
Sbjct:     2 MYQTIPTAPTIRGGTPTESGDYVVTLDQIPRWSDVEQRSSLEDETGDPEHSNPRYANPLA 61

Query:    60 XXXXXXXXXNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSXXXXX 119
                      NGMVS+FPVDHEINS+IYLWRG PWNLEVD VVNSTNENLDEAHSS     
Sbjct:    62 SSSEAGSSGNGMVSKFPVDHEINSRIYLWRGEPWNLEVDAVVNSTNENLDEAHSSPGLHV 121

Query:   120 XXXXXXXEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRS 179
                    E+CATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRS
Sbjct:   122 AAGPGLAEQCATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRS 181

Query:   180 CLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTAS 239
             CLELLI++GL+SIA+GCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTT+S
Sbjct:   182 CLELLIDSGLQSIALGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTSS 241

Query:   240 DTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDERXXXXXXXXXXXXXXXXX 299
             DTEIYKRLLPLYFPRD+HEEEVAISKLPADVGDENGET+IDER                 
Sbjct:   242 DTEIYKRLLPLYFPRDEHEEEVAISKLPADVGDENGETVIDERKIRIQALPNKPPPRSFP 301

Query:   300 XXXXXXXSDVGLIRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLG 359
                    +D+ L+RRNS++LDSYLDPAFMSLIKDPD+RRKEQWEKTAQAQSG+N  K+LG
Sbjct:   302 TPLERPSTDLTLLRRNSNHLDSYLDPAFMSLIKDPDERRKEQWEKTAQAQSGFNFVKLLG 361

Query:   360 FGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFL 419
             FGDLGGPPLSAAEEYSLHSRYLAKANS+NLSEIAEMKIVYRGGVD+EG PVMVVVGAHFL
Sbjct:   362 FGDLGGPPLSAAEEYSLHSRYLAKANSINLSEIAEMKIVYRGGVDTEGHPVMVVVGAHFL 421

Query:   420 LRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNL 479
             LRCLDLERFVLYV+KEFEP+IQKPYSIVYFHSAASLQ+QPDLGWM+RL+Q+LGRKHQRNL
Sbjct:   422 LRCLDLERFVLYVIKEFEPVIQKPYSIVYFHSAASLQVQPDLGWMKRLEQILGRKHQRNL 481

Query:   480 HAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXXRLLQLFRYVPREQLTIPDFVFQHDL 539
              AIYVLHPTFHLKATI T+Q               RLLQLF+YVPREQLTIPDFVFQHDL
Sbjct:   482 QAIYVLHPTFHLKATILTMQFFVDNVVWKKVVYADRLLQLFKYVPREQLTIPDFVFQHDL 541

Query:   540 EVNGGKGLIVDPRTKYVYQRP 560
             EVNGGKGLIVDPRTKYVYQRP
Sbjct:   542 EVNGGKGLIVDPRTKYVYQRP 562
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-040912-31 gdap2 "ganglioside induced differentiation associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1306050 Gdap2 "ganglioside-induced differentiation-associated-protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66H63 Gdap2 "Ganglioside-induced differentiation-associated-protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCF0 GDAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAY8 GDAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1338001 Gdap2 "ganglioside-induced differentiation-associated-protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KIX2 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NXN4 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K9 GDAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9NXN4GDAP2_HUMANNo assigned EC number0.35720.83030.9356yesno
Q2KIX2GDAP2_BOVINNo assigned EC number0.35270.83390.9396yesno
Q292F9GDAP2_DROPSNo assigned EC number0.32640.81600.8431yesno
Q9DBL2GDAP2_MOUSENo assigned EC number0.34930.83390.9377yesno
Q5CZL1GDAP2_XENTRNo assigned EC number0.34900.85890.9697yesno
Q7JUR6GDAP2_DROMENo assigned EC number0.33470.81600.8462yesno
Q66H63GDAP2_RATNo assigned EC number0.35940.83210.9376yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.21LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 2e-82
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 6e-54
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 2e-42
pfam01661117 pfam01661, Macro, Macro domain 2e-38
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 7e-34
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 9e-32
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 4e-31
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 9e-28
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 4e-23
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 3e-21
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 3e-20
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 5e-18
smart00516158 smart00516, SEC14, Domain in homologues of a S 2e-12
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 2e-11
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 2e-10
cd02904186 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l 2e-05
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information 
 Score =  253 bits (648), Expect = 2e-82
 Identities = 85/140 (60%), Positives = 102/140 (72%), Gaps = 1/140 (0%)

Query: 83  SKIYLWRGNPWNLEVDTVVNSTNENL-DEAHSSPGLHAAAGPGLAEECATLGGCRTGMAK 141
           ++I LW G+  NL VD +VNSTNE L D+   S  + A AG  L EE  TLGGCRTG AK
Sbjct: 1   NRIVLWEGDICNLNVDAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLGGCRTGEAK 60

Query: 142 VTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEA 201
           +T  Y+LPAR +IHTVGPKY VKY TAAENAL  CYR+ L+L  E GL+SIA+  I +E 
Sbjct: 61  LTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEK 120

Query: 202 KNYPREPAAHVAIRTVRRFL 221
           +NYP E AAH+A+RTVRRFL
Sbjct: 121 RNYPPEAAAHIALRTVRRFL 140

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal Sec14p-like lipid binding domain. It is specifically expressed in brain and testis. Length = 140
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information
>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 560
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
PRK04143264 hypothetical protein; Provisional 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 100.0
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 100.0
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 99.97
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.94
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.93
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.93
PRK13341725 recombination factor protein RarA/unknown domain f 99.93
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.92
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.91
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 99.88
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.84
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.81
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.81
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.76
KOG1470324 consensus Phosphatidylinositol transfer protein PD 99.76
KOG1471317 consensus Phosphatidylinositol transfer protein SE 99.46
PHA02595154 tk.4 hypothetical protein; Provisional 99.44
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 98.42
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 98.09
KOG1826 2724 consensus Ras GTPase activating protein RasGAP/neu 97.81
TIGR02452266 conserved hypothetical protein TIGR02452. Members 97.08
PF10154510 DUF2362: Uncharacterized conserved protein (DUF236 96.11
COG4295285 Uncharacterized protein conserved in bacteria [Fun 95.5
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information 
Probab=100.00  E-value=4.5e-44  Score=340.26  Aligned_cols=167  Identities=23%  Similarity=0.388  Sum_probs=154.5

Q ss_pred             ccccCCCCEEEEEEcCC--ccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeecCCC
Q 008583           76 PVDHEINSKIYLWRGNP--WNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDL  148 (560)
Q Consensus        76 ~~~~~~n~~I~i~~GDI--~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~~~vT~~~~L  148 (560)
                      ....-.|.+|.||+|||  |++++|||||+||++|.++|| ++||+++||++|++||+++    ++|++|++++|+||+|
T Consensus        11 ~~~~~~~~~i~i~~gDI~~t~~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~L   90 (186)
T cd02904          11 TKSLFLGQKLSLVQSDISIGSIDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGL   90 (186)
T ss_pred             chhhcCCCEEEEEECCccccceeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCC
Confidence            34455689999999999  999999999999999998876 5999999999999999865    7899999999999999


Q ss_pred             CCCeEEEEcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-CC
Q 008583          149 PARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DK  227 (560)
Q Consensus       149 ~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~-~~  227 (560)
                      |||||||||||.|+.+   ..++.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++ ++
T Consensus        91 p~k~VIHtVgP~~~~~---~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~  167 (186)
T cd02904          91 PAKFVIHCHSPQWGSD---KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSS  167 (186)
T ss_pred             CCCEEEEeCCCCCCCC---chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999654   2468999999999999999999999999999999999999999999999999999874 67


Q ss_pred             ccEEEEEecChhHHHHHH
Q 008583          228 ISAVVFCTTTASDTEIYK  245 (560)
Q Consensus       228 i~~V~fv~~~~~~~~~y~  245 (560)
                      +++|+||+++++++++|.
T Consensus       168 l~~I~fv~~~~~~~~~y~  185 (186)
T cd02904         168 IKQIYFVLFDSESIGIYV  185 (186)
T ss_pred             ccEEEEEECCHHHHHHhh
Confidence            999999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms] Back     alignment and domain information
>TIGR02452 conserved hypothetical protein TIGR02452 Back     alignment and domain information
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans Back     alignment and domain information
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 8e-31
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 5e-13
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 1e-06
3q71_A221 Human Parp14 (Artd8) - Macro Domain 2 In Complex Wi 4e-05
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 5e-05
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 5e-05
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 5e-05
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 8e-05
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 1e-04
1zr5_A214 Crystal Structure Of The Macro-Domain Of Human Core 2e-04
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 2e-04
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 2e-04
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure 
Iteration: 1

 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 74  RFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENL-DEAHSSXXXXXXXXXXXXEECATL 132
           R+  D ++N KI L R +   LEVD +VN+ N +L                   +EC TL
Sbjct: 53  RYKKDKQLNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTL 112
Query: 133 GGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSI 192
             C+TG AK+T  Y LPA+ VIHTVGP    +   +    L  CY S L+LL+E+ L+S+
Sbjct: 113 QSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSV 172
Query: 193 AMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYF 252
           A  CI T    YP E AA + + T+R +LE+ KDK+  ++ C     D +IY+  LP YF
Sbjct: 173 AFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYF 232
Query: 253 P 253
           P
Sbjct: 233 P 233
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With Adenosine-5- Diphosphoribose Length = 221 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
2x47_A235 Macro domain-containing protein 1; signaling prote 2e-82
1spv_A184 Putative polyprotein/phosphatase; structural genom 2e-68
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 1e-55
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 5e-54
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 8e-54
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 1e-53
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 1e-52
1vhu_A211 Hypothetical protein AF1521; structural genomics, 5e-48
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 3e-46
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 7e-44
3gqe_A168 Non-structural protein 3; macro domain, X domain, 3e-40
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 7e-40
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 3e-39
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 2e-38
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 3e-35
2vri_A174 Non-structural protein 3; RNA replication, nucleot 6e-31
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 2e-30
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 3e-30
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
 Score =  256 bits (656), Expect = 2e-82
 Identities = 79/198 (39%), Positives = 109/198 (55%), Gaps = 1/198 (0%)

Query: 57  PLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPG 116
           P         +      R+  D ++N KI L R +   LEVD +VN+ N +L       G
Sbjct: 36  PTWKEMAKGVAVKVEEPRYKKDKQLNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDG 95

Query: 117 -LHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSH 175
            +H AAGP L +EC TL  C+TG AK+T  Y LPA+ VIHTVGP    +   +    L  
Sbjct: 96  CIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRS 155

Query: 176 CYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235
           CY S L+LL+E+ L+S+A  CI T    YP E AA + + T+R +LE+ KDK+  ++ C 
Sbjct: 156 CYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICV 215

Query: 236 TTASDTEIYKRLLPLYFP 253
               D +IY+  LP YFP
Sbjct: 216 FLEKDEDIYRSRLPHYFP 233
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 100.0
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 100.0
2vri_A174 Non-structural protein 3; RNA replication, nucleot 100.0
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 100.0
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 100.0
4gua_A670 Non-structural polyprotein; viral precursor polypr 99.97
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.97
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.94
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.92
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.92
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.89
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 99.84
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 99.82
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 99.79
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 99.77
1olm_A 403 SEC14-like protein 2; lipid-binding protein, chole 99.75
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 98.74
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.8e-49  Score=389.47  Aligned_cols=208  Identities=39%  Similarity=0.671  Sum_probs=188.2

Q ss_pred             CceeecCCCCCCchhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCEEEEEEcCCccccccE
Q 008583           20 DSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDT   99 (560)
Q Consensus        20 ~~~v~~~~l~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~n~~I~i~~GDI~~~~vDa   99 (560)
                      +++|++++||+|++.....       .                     +....+.|+++..+|.+|.|++|||+++++||
T Consensus        27 ~~~v~~~~ip~w~~~~~~~-------~---------------------~~~~~~~~~~~~~~~~~i~i~~GDIt~~~vDa   78 (235)
T 2x47_A           27 KDFVRLKKIPTWKEMAKGV-------A---------------------VKVEEPRYKKDKQLNEKISLLRSDITKLEVDA   78 (235)
T ss_dssp             SCCEEGGGSCCHHHHHTTC-------C---------------------------CCCCCHHHHTTEEEEESCGGGEESSE
T ss_pred             cCccchhhCCcHHHhcccc-------C---------------------ccccCCCCCcccccCCEEEEEeCccCcccCCE
Confidence            4699999999999855410       0                     01124678899999999999999999999999


Q ss_pred             EEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeecCCCCCCeEEEEcCCccCCCCchhHHHHHHHHHH
Q 008583          100 VVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYR  178 (560)
Q Consensus       100 IVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~  178 (560)
                      |||+||++|.+||| ++||+++||++|++||+++++|++|++++|+||+|||+||||+|||.|+++......+.|++||+
T Consensus        79 IVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~  158 (235)
T 2x47_A           79 IVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYL  158 (235)
T ss_dssp             EEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSCCCCBTCEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHH
T ss_pred             EEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhCCCCCCceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHH
Confidence            99999999998887 58999999999999999999999999999999999999999999999987555566789999999


Q ss_pred             HHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhHHHHHHHHhhhcCCCC
Q 008583          179 SCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRD  255 (560)
Q Consensus       179 ~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr~  255 (560)
                      +||++|.+++++|||||+||||++|||++++|++|++++++|+++++.++++|+||++++.++++|+++|+.||||.
T Consensus       159 ~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~~~y~~~l~~~fp~~  235 (235)
T 2x47_A          159 SSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYFPVA  235 (235)
T ss_dssp             HHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999887779999999999999999999999999984
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 560
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 4e-36
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 6e-35
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 9e-33
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 1e-29
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 5e-18
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 9e-10
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 2e-09
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 1e-04
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 0.002
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

 Score =  130 bits (328), Expect = 4e-36
 Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 7/172 (4%)

Query: 83  SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPG-LHAAAGPGLAEECATL----GGCRT 137
           ++I++ +G+   L VD +VN+ N +L       G +H AAGP L + C  +    G C T
Sbjct: 1   TRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 60

Query: 138 GMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCI 197
           G A +T A DLPA+ V+HTVGP +        +  L   Y + L L+  N   S+A   I
Sbjct: 61  GHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQL-LQDAYLNSLRLVAANSYTSVAFPAI 119

Query: 198 YTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLP 249
            T    YPR  AA +A++TV  F+ +       V F      +  +Y+RLL 
Sbjct: 120 STGVYGYPRAAAAEIAVKTVSEFITRHAL-PEQVYFVCYDEENAHLYERLLT 170
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 100.0
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 99.98
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.93
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.83
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.76
d1olma3199 Supernatant protein factor (SPF), middle domain {H 99.76
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 99.74
d1gyta1178 Leucine aminopeptidase (Aminopeptidase A), N-termi 96.26
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-39  Score=308.49  Aligned_cols=170  Identities=23%  Similarity=0.354  Sum_probs=157.8

Q ss_pred             CCCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeecCCCCCCeEE
Q 008583           80 EINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVI  154 (560)
Q Consensus        80 ~~n~~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~~~vT~~~~L~~k~II  154 (560)
                      ..|.+|+|++|||+++++|||||++|+++.++++ +++|+++||++|++||+++    +++.+|++++|++|+|||+|||
T Consensus        11 ~~~~~i~i~~GDIt~~~~DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~~g~~~vT~~~~L~~k~Ii   90 (188)
T d1yd9a1          11 FLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVI   90 (188)
T ss_dssp             TTSCEEEEECSCGGGCCCSEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEECTTSSSSEEE
T ss_pred             ccCCEEEEEeCCcCcCCCCEEEECCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCeeecccCCCCceEEe
Confidence            4689999999999999999999999999998776 5899999999999999753    7899999999999999999999


Q ss_pred             EEcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCccEEEE
Q 008583          155 HTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAVVF  233 (560)
Q Consensus       155 H~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~-~~i~~V~f  233 (560)
                      |+|+|+|+.+   ...+.|++||++||+.|++++++|||||+||||.+|||++.+|++|++++++|+++++ .++++|+|
T Consensus        91 H~v~P~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~~~l~~V~~  167 (188)
T d1yd9a1          91 HCNSPVWGSD---KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYF  167 (188)
T ss_dssp             EECCCCTTST---THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCCCCEEEE
T ss_pred             eeccccCCCc---chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEE
Confidence            9999999875   3457999999999999999999999999999999999999999999999999998864 67999999


Q ss_pred             EecChhHHHHHHHHhhhcC
Q 008583          234 CTTTASDTEIYKRLLPLYF  252 (560)
Q Consensus       234 v~~~~~~~~~y~~~l~~yf  252 (560)
                      |+++++++++|++.|.+..
T Consensus       168 v~~~~~~~~~f~~~l~ki~  186 (188)
T d1yd9a1         168 VLFDSESIGIYVQEMAKLD  186 (188)
T ss_dssp             ECCSHHHHHHHHHHHTTTT
T ss_pred             EeCCHHHHHHHHHHHHHHh
Confidence            9999999999999987654
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]} Back     information, alignment and structure