Citrus Sinensis ID: 008584

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIASPSTPSSSSSPETSYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSNSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNLQTMQRRVRELEEVCREMKGHMHKLVRHNRNLPRLC
ccccccEEEEEccEEEEEccHHHHHcccHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccEEcccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
ccccccEEEEEEccEEEEEcccccHccHHHHHHHHccccccEEEEccccccHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccEEcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHcccccHHHHEHHHHHHHHHHHHHHcccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVieikgfpggptgFELVSRFCynngrikitVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQhsdlsliiaspstpssssspetsygcrfsctstkttpesiikpscssspspskawwfddltiLSPVIIEKISKglgaygaenNSLILTRFLLHYLKGCVqaqskgggyggngsysgladTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLvsgqgygnghdrgvYDVNLVIRLIRIFVnsnssnsdlvgsqKLKKFGRLIDKYLgeispdqkltvpkflgvaeslpdsarecFDGVYRAVDIYleshptlsfkeRSELCRCLNYKKLTLEASKYlaknpkippnVAIQALMSqhsklptkdefsyhqsdtkrkidpstknsqVVLYngagagviddterfsgeneNVRLNLQTMQRRVRELEEVCREMKGHMHKLVRhnrnlprlc
msqlcdiqihvnghqtfflneqTITKYSERLKKIIKQesrrvieikgfpggptgfeLVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIASPstpssssspetsYGCRFSCTstkttpesiikpscssspspskAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIfvnsnssnsdlvgsqKLKKFGRLIDKYLGeispdqkltVPKFLGVAESLPDSARECFDGVYRAVDIYLEshptlsfkerseLCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLPTKDEFSYHQSdtkrkidpstknsQVVLYNGAGagviddterfsgenenvrlnlqtMQRRVRELEEVCREMkghmhklvrhnrnlprlc
MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIAspstpssssspetsYGCRFSCTSTKTTPEsiikpscssspspskAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKgggyggngsysgLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSNSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNLQTMQrrvreleevcreMKGHMHKLVRHNRNLPRLC
***LCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLII*********************************************AWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSN*****LVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKI***VA************************************VVLYNGAGAGVIDD**************************************************
*SQLCDIQIHVNGHQTFFLNEQTITKYSERLK**IK*****VIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLS*************************************************WWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCV****************GLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQG*****DRGVYDVNLVIRLIRIFV*****************FGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHS**************************************************************V***********************LPRLC
MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIAS****************RFSCT********************SKAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSNSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSK******************DPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNLQTMQRRVRELEEVCREMKGHMHKLVRHNRNLPRLC
**QLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIASPSTP*S*SS******************************SPSKAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSNSS***LVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLPTKDE********************************DDTERFSGENENVRLNLQTMQRRVRELEEVCREMKGHMHKLVRH**N*****
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MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIASPSTPSSSSSPETSYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSNSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGExxxxxxxxxxxxxxxxxxxxxxxxxxxxMHKLVRHNRNLPRLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query560 2.2.26 [Sep-21-2011]
Q9LT24554 BTB/POZ domain-containing yes no 0.951 0.962 0.495 1e-139
Q8RXR6525 BTB/POZ domain-containing no no 0.807 0.860 0.539 1e-131
Q9C5J4506 BTB/POZ domain-containing no no 0.869 0.962 0.328 3e-69
Q9LYW0592 BTB/POZ domain-containing no no 0.896 0.847 0.287 1e-52
Q9S9Q9665 BTB/POZ domain-containing no no 0.925 0.778 0.276 3e-52
Q94A73668 BTB/POZ domain-containing no no 0.867 0.727 0.308 5e-52
Q8LPQ3569 BTB/POZ domain-containing no no 0.867 0.854 0.293 2e-47
Q9FNB3591 Putative BTB/POZ domain-c no no 0.889 0.842 0.279 1e-46
O82253635 BTB/POZ domain-containing no no 0.876 0.773 0.262 5e-45
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.835 0.804 0.268 6e-45
>sp|Q9LT24|Y3985_ARATH BTB/POZ domain-containing protein At3g19850 OS=Arabidopsis thaliana GN=At3g19850 PE=2 SV=1 Back     alignment and function desciption
 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/581 (49%), Positives = 385/581 (66%), Gaps = 48/581 (8%)

Query: 1   MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQE---------SRRVIEIKGFPGG 51
           MS  CD+QI++N   TFF+N+  I++YS  L+K+IKQ          SR +IE++ FPGG
Sbjct: 1   MSLCCDLQINLNNQFTFFVNQDLISEYSGFLRKMIKQSNKKKKNHKNSRIIIEVEDFPGG 60

Query: 52  PTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYW 111
             GF+LV RFCY  G I I VSNVSILHC S+FL MT+ + S+N LL +TE FLEGMFYW
Sbjct: 61  SDGFDLVLRFCYGGG-ISIDVSNVSILHCSSVFLEMTEKLCSSN-LLLRTEKFLEGMFYW 118

Query: 112 SWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIASPSTPSSSSSPET 171
           SW+DI+  LKSCE +F +A S GLVDK +  +LAKI Q+SD+S + +S S  SS+S+  +
Sbjct: 119 SWNDIVLCLKSCEQVFLHADSYGLVDKLVFGVLAKIPQNSDVSHVFSSSSPSSSASASAS 178

Query: 172 SYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGAYGAEN 231
           S     +   + +   S    S S S   S  WWFDD++IL P IIEK+   LGA+   N
Sbjct: 179 SQSPETAMIRSYSDKRS---TSRSFSCRTSNEWWFDDMSILGPKIIEKLINTLGAHDKNN 235

Query: 232 NSLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVL 291
           +SL+LT+FLLHYLK  V  +S          YSGLADTAV GV+F  K +FSCRK+FWVL
Sbjct: 236 DSLVLTKFLLHYLKTKVPNKSTN-----KLEYSGLADTAVQGVVFAAKTAFSCRKMFWVL 290

Query: 292 RIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIF 351
           R++S F ISK+ R GLE +IG MLD+ATLDDLL+   G G   ++GVYDV+LVIRL+++F
Sbjct: 291 RVLSGFSISKESRIGLERVIGEMLDQATLDDLLIPAGGKG---EKGVYDVDLVIRLLKVF 347

Query: 352 V---NSNSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFD 408
           V   N+   + +L    ++++ G+LIDKYL EISPDQ L V KFL VAESLPDSAR+ FD
Sbjct: 348 VRIGNTEEGDQNL----RMRRIGKLIDKYLREISPDQNLKVSKFLEVAESLPDSARDWFD 403

Query: 409 GVYRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQH 468
           G+YRA++IYLESHP LS ++R++LCRCLNYKKLTL+  K LAKNPKIPPN+A+QAL SQ 
Sbjct: 404 GLYRAINIYLESHPKLSSEDRTKLCRCLNYKKLTLDTCKQLAKNPKIPPNIAVQALKSQQ 463

Query: 469 SKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVI---DDTERFSGENENVRLNL 525
                 +E   H  + K K++    NS+  L        +   D +E+F    +++ +NL
Sbjct: 464 ----LSNETRPHSREDKNKVN-KIWNSRKYLEEKPILVCLKGFDMSEKFE---DDLMMNL 515

Query: 526 QTMQRRVRELEEVCREMKGH-MHKLVRH-----NRNLPRLC 560
           +  +++    E+V +E K   M + VRH     + + PRLC
Sbjct: 516 E--RKQWNNSEKVSKEKKSEVMSRSVRHGHTHSSSSFPRLC 554
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8RXR6|Y1028_ARATH BTB/POZ domain-containing protein At1g50280 OS=Arabidopsis thaliana GN=At1g50280 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5J4|Y3210_ARATH BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q8LPQ3|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
225425082538 PREDICTED: BTB/POZ domain-containing pro 0.932 0.970 0.612 0.0
297738256512 unnamed protein product [Vitis vinifera] 0.889 0.972 0.597 0.0
224109052551 predicted protein [Populus trichocarpa] 0.935 0.950 0.591 1e-176
255549497535 protein binding protein, putative [Ricin 0.928 0.971 0.573 1e-172
356544414569 PREDICTED: BTB/POZ domain-containing pro 0.941 0.926 0.553 1e-163
356538607541 PREDICTED: BTB/POZ domain-containing pro 0.939 0.972 0.546 1e-160
449527347551 PREDICTED: BTB/POZ domain-containing pro 0.928 0.943 0.518 1e-157
356530225516 PREDICTED: BTB/POZ domain-containing pro 0.919 0.998 0.537 1e-151
195617510580 photoreceptor-interacting protein-like [ 0.958 0.925 0.474 1e-148
90399199566 H0403D02.14 [Oryza sativa Indica Group] 0.957 0.946 0.481 1e-147
>gi|225425082|ref|XP_002273118.1| PREDICTED: BTB/POZ domain-containing protein At3g19850 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/576 (61%), Positives = 423/576 (73%), Gaps = 54/576 (9%)

Query: 1   MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRV------IEIKGFPGGPTG 54
           M +LCD+QIHVN  QTFF+NE+ I+KYS RLKK+IKQE RR       I+I  FPGG  G
Sbjct: 1   MPELCDLQIHVNAQQTFFVNEKIISKYSGRLKKVIKQEKRRTQIKNSGIDIDDFPGGADG 60

Query: 55  FELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWS 114
           FELVSRFCYN+G+I +TVSNVS+LHCC++FLGMT+ VS  N LLQQTE+FLEGMFYWSW+
Sbjct: 61  FELVSRFCYNHGKITVTVSNVSLLHCCAVFLGMTEKVSPCN-LLQQTETFLEGMFYWSWN 119

Query: 115 DIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIASPSTPSSSSSPETSYG 174
           DI+ SLKSCES F YA S GL++K I ALLAK AQ+SD+ LI  +PS+ SSSSSPET+ G
Sbjct: 120 DILVSLKSCESFFSYADSSGLLEKLIGALLAKFAQNSDIILI--APSS-SSSSSPETTSG 176

Query: 175 CRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGAYGAENNSL 234
            +FS +STK TP+SI + S       SKAWWFDDL+IL P IIEK+ K LGAY  ENNSL
Sbjct: 177 FQFS-SSTKNTPQSIRRRS------SSKAWWFDDLSILPPKIIEKVIKSLGAYSTENNSL 229

Query: 235 ILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIV 294
           +LT+FLLHYL+    A  + G       Y  LADT  +GVI +GK +FS R LFW+LR+V
Sbjct: 230 VLTKFLLHYLQKT--AVHRKGSLNSRSEYGSLADTVAYGVILLGKTAFSWRGLFWILRVV 287

Query: 295 SNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNS 354
           S  G+S+DCR GLE +IGGMLD+ATLDDLLV G      HD GVYDVNLV+RLIR+FV+ 
Sbjct: 288 SGLGLSRDCRIGLERLIGGMLDQATLDDLLVCG------HDGGVYDVNLVLRLIRVFVSD 341

Query: 355 NSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAV 414
                D V +QK+KK GRLIDKYLGE+SPDQ L + KFLGVAESLPDSAR+CFDGVYRA+
Sbjct: 342 -----DGVSAQKMKKVGRLIDKYLGEVSPDQNLKISKFLGVAESLPDSARDCFDGVYRAI 396

Query: 415 DIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSK--LP 472
           DIYL+SHPTLSF+ERS LCRCLNY+KLTLEA K LAK+P+IPP +A+QAL SQ  +  +P
Sbjct: 397 DIYLQSHPTLSFEERSRLCRCLNYEKLTLEACKDLAKSPRIPPKIAVQALASQSQQCTIP 456

Query: 473 TKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNLQTMQRRV 532
           T  EF Y          P   ++Q+VLYN        D E  S ENE++RLNLQ MQ RV
Sbjct: 457 TTQEFVYE--------SPIKSHAQMVLYNSF------DAESVSEENEDMRLNLQRMQWRV 502

Query: 533 RELEEVCREMKGHMHKLVR--------HNRNLPRLC 560
            ELE  CR+MKG M ++ R        +NR LPRLC
Sbjct: 503 VELERACRKMKGEMSRMARNKIATSPGNNRALPRLC 538

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738256|emb|CBI27457.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109052|ref|XP_002315064.1| predicted protein [Populus trichocarpa] gi|222864104|gb|EEF01235.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255549497|ref|XP_002515801.1| protein binding protein, putative [Ricinus communis] gi|223545070|gb|EEF46582.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356544414|ref|XP_003540646.1| PREDICTED: BTB/POZ domain-containing protein At1g50280-like [Glycine max] Back     alignment and taxonomy information
>gi|356538607|ref|XP_003537793.1| PREDICTED: BTB/POZ domain-containing protein At3g19850-like [Glycine max] Back     alignment and taxonomy information
>gi|449527347|ref|XP_004170673.1| PREDICTED: BTB/POZ domain-containing protein At3g19850-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530225|ref|XP_003533683.1| PREDICTED: BTB/POZ domain-containing protein At3g19850-like [Glycine max] Back     alignment and taxonomy information
>gi|195617510|gb|ACG30585.1| photoreceptor-interacting protein-like [Zea mays] Back     alignment and taxonomy information
>gi|90399199|emb|CAH68185.1| H0403D02.14 [Oryza sativa Indica Group] gi|125550201|gb|EAY96023.1| hypothetical protein OsI_17894 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
TAIR|locus:2092301554 AT3G19850 [Arabidopsis thalian 0.958 0.969 0.473 3.9e-124
TAIR|locus:2011882525 AT1G50280 [Arabidopsis thalian 0.842 0.899 0.501 2.8e-121
TAIR|locus:2095637506 AT3G22104 [Arabidopsis thalian 0.342 0.379 0.375 3.6e-52
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.735 0.616 0.326 1.1e-48
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.303 0.287 0.373 3e-43
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.212 0.159 0.425 4.7e-41
TAIR|locus:2077992569 AT3G50840 [Arabidopsis thalian 0.458 0.451 0.327 5.7e-41
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.421 0.405 0.318 2.2e-40
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.558 0.518 0.281 4.4e-40
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.460 0.396 0.292 1.3e-39
TAIR|locus:2092301 AT3G19850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 273/577 (47%), Positives = 358/577 (62%)

Query:     1 MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQE---------SRRVIEIKGFPGG 51
             MS  CD+QI++N   TFF+N+  I++YS  L+K+IKQ          SR +IE++ FPGG
Sbjct:     1 MSLCCDLQINLNNQFTFFVNQDLISEYSGFLRKMIKQSNKKKKNHKNSRIIIEVEDFPGG 60

Query:    52 PTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYW 111
               GF+LV RFCY  G I I VSNVSILHC S+FL MT+ + S+N LL +TE FLEGMFYW
Sbjct:    61 SDGFDLVLRFCYGGG-ISIDVSNVSILHCSSVFLEMTEKLCSSN-LLLRTEKFLEGMFYW 118

Query:   112 SWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIAXXXXXXXXXXXXX 171
             SW+DI+  LKSCE +F +A S GLVDK +  +LAKI Q+SD+S + +             
Sbjct:   119 SWNDIVLCLKSCEQVFLHADSYGLVDKLVFGVLAKIPQNSDVSHVFSSSSPSSSASASAS 178

Query:   172 XYGCRFSCTSTKTTPEXXXXXXXXXXXXXXXAWWFDDLTILSPVIIEKISKGLGAYGAEN 231
                     T+   +                  WWFDD++IL P IIEK+   LGA+   N
Sbjct:   179 SQSPE---TAMIRSYSDKRSTSRSFSCRTSNEWWFDDMSILGPKIIEKLINTLGAHDKNN 235

Query:   232 NSLILTRFLLHYLKGCVQAQSKXXXXXXXXXXXXLADTAVHGVIFIGKCSFSCRKLFWVL 291
             +SL+LT+FLLHYLK  V  +S             LADTAV GV+F  K +FSCRK+FWVL
Sbjct:   236 DSLVLTKFLLHYLKTKVPNKS-----TNKLEYSGLADTAVQGVVFAAKTAFSCRKMFWVL 290

Query:   292 RIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIF 351
             R++S F ISK+ R GLE +IG MLD+ATLDDLL+   G G   ++GVYDV+LVIRL+++F
Sbjct:   291 RVLSGFSISKESRIGLERVIGEMLDQATLDDLLIPAGGKG---EKGVYDVDLVIRLLKVF 347

Query:   352 VN-SNSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGV 410
             V   N+   D   + ++++ G+LIDKYL EISPDQ L V KFL VAESLPDSAR+ FDG+
Sbjct:   348 VRIGNTEEGDQ--NLRMRRIGKLIDKYLREISPDQNLKVSKFLEVAESLPDSARDWFDGL 405

Query:   411 YRAVDIYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSK 470
             YRA++IYLESHP LS ++R++LCRCLNYKKLTL+  K LAKNPKIPPN+A+QAL SQ   
Sbjct:   406 YRAINIYLESHPKLSSEDRTKLCRCLNYKKLTLDTCKQLAKNPKIPPNIAVQALKSQQLS 465

Query:   471 LPTKDEFSYHQSDTKRKIDPSTK--NSQVVLYNGAGAGVIDDTERFSGENENVRLNLQTM 528
               T+   S    +   KI  S K    + +L    G    D +E+F    +++ +NL+  
Sbjct:   466 NETRPH-SREDKNKVNKIWNSRKYLEEKPILVCLKG---FDMSEKFE---DDLMMNLERK 518

Query:   529 QXXXXXXXXXXXXMKGHMHKLVRHNR-----NLPRLC 560
             Q             +  M + VRH       + PRLC
Sbjct:   519 QWNNSEKVSKEKKSEV-MSRSVRHGHTHSSSSFPRLC 554
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0009637 "response to blue light" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0046777 "protein autophosphorylation" evidence=RCA
TAIR|locus:2011882 AT1G50280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095637 AT3G22104 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LT24Y3985_ARATHNo assigned EC number0.49560.95170.9620yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
pfam03000249 pfam03000, NPH3, NPH3 family 2e-77
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  244 bits (625), Expect = 2e-77
 Identities = 91/253 (35%), Positives = 137/253 (54%), Gaps = 16/253 (6%)

Query: 204 WWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQ--AQSKGGGYGGNG 261
           WWF+DL+ LS  + +++   + + G      ++   L+HY K  +   ++S         
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRG--VKPEVIGEALMHYAKKWLPGLSRSGSSEEDSEE 60

Query: 262 SYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLD 321
               L +T V  +    K S SC  LF +LR     G S+ CR  LE  IG  LD+ATLD
Sbjct: 61  EQRALLETIVSLLPS-EKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATLD 119

Query: 322 DLLVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSN--------SSNSDLVGSQKLKKFGRL 373
           DLL+     G      +YDV+LV R++ +F++ +          +     S  L K  +L
Sbjct: 120 DLLIPSGYSGEE---TLYDVDLVQRILEVFLSRDAATQSSDDEDSEASPSSSSLLKVAKL 176

Query: 374 IDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPTLSFKERSELC 433
           +D YL EI+PD  L + KF+ +AE++PDSAR   DG+YRA+DIYL++HP LS  E+  LC
Sbjct: 177 VDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEKKRLC 236

Query: 434 RCLNYKKLTLEAS 446
           R ++ +KL+ EA 
Sbjct: 237 RLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 560
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
PHA02790480 Kelch-like protein; Provisional 99.8
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.8
PHA02713557 hypothetical protein; Provisional 99.77
PHA03098534 kelch-like protein; Provisional 99.71
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.62
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.53
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.03
KOG4350620 consensus Uncharacterized conserved protein, conta 98.89
KOG4591280 consensus Uncharacterized conserved protein, conta 98.35
KOG4682488 consensus Uncharacterized conserved protein, conta 98.28
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.04
KOG07831267 consensus Uncharacterized conserved protein, conta 98.03
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.77
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.92
KOG3473112 consensus RNA polymerase II transcription elongati 96.68
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.8
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 95.74
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 93.93
KOG2838401 consensus Uncharacterized conserved protein, conta 93.57
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 91.57
KOG2838401 consensus Uncharacterized conserved protein, conta 87.18
KOG0511516 consensus Ankyrin repeat protein [General function 84.46
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=3.3e-86  Score=666.09  Aligned_cols=239  Identities=39%  Similarity=0.642  Sum_probs=216.3

Q ss_pred             CCchhhhhcccChHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhhccCCCCC---------CCCCCCccchhHHHHHhh
Q 008584          202 KAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKG---------GGYGGNGSYSGLADTAVH  272 (560)
Q Consensus       202 ~dWW~eDl~~L~~~~~~rvi~am~~~~~~~~~~~i~~~l~~Ya~~~l~~~~~~---------~~~~~~~~~r~llE~iv~  272 (560)
                      +|||||||+.|++|+|+|||.+|++  +++++++|+++|+|||++|+|+.++.         .......+||.+||+||.
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~--~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~   78 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKS--KGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVS   78 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHH
Confidence            4899999999999999999999975  69999999999999999999997321         123456789999999999


Q ss_pred             ccccCCCCccchhHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccCcccccccCCCCCCCCCCcccchHHHHHHHHHHH
Q 008584          273 GVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFV  352 (560)
Q Consensus       273 lllp~~k~~~s~~fLf~lLr~a~~l~as~~cr~~LE~rIg~qLd~AtldDLLiP~~~y~~~~~~~~yDvd~V~ril~~Fl  352 (560)
                      + +|.+|+++||+|||+|||+|+++++|+.||.+||+|||.|||||||||||||+ +|+  ...+.||||+|+|||++||
T Consensus        79 l-LP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~--~~~t~yDVd~V~riv~~Fl  154 (258)
T PF03000_consen   79 L-LPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPS--GEDTLYDVDLVQRIVEHFL  154 (258)
T ss_pred             h-CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCC--cccchhhHHHHHHHHHHHH
Confidence            7 57899999999999999999999999999999999999999999999999997 222  2235699999999999999


Q ss_pred             hcCCC----------CCcccchhhHHHHHHhhhhhhhhccCCCCCChhHHHHHHHhcCCcccccCcchhHHHHHHHhhCC
Q 008584          353 NSNSS----------NSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHP  422 (560)
Q Consensus       353 ~~~~~----------~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~KF~~Lae~lPd~aR~~~DgLYrAIDiYLk~Hp  422 (560)
                      .+.+.          .....+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            88321          11234678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHhhhhhcccccccCCCHHHh
Q 008584          423 TLSFKERSELCRCLNYKKLTLEAS  446 (560)
Q Consensus       423 ~lse~Er~~lCr~ldcqKLS~EAc  446 (560)
                      +||++||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 8e-04
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 73.0 bits (178), Expect = 2e-13
 Identities = 78/554 (14%), Positives = 164/554 (29%), Gaps = 178/554 (32%)

Query: 104 FLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLSLIIASPSTP 163
           F  G   + + DI++     E  F   + C  V     ++L+K     ++  II S    
Sbjct: 9   FETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSK----EEIDHIIMSKDAV 61

Query: 164 SSSSSPETSYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKG 223
           S +              +  +  E +++         +  +      ++SP+  E+    
Sbjct: 62  SGT---------LRLFWTLLSKQEEMVQKFVEEVLRINYKF------LMSPIKTEQRQPS 106

Query: 224 LG--AYGAENNSLI----------LTRF-LLHYLKGCVQAQSKGGGYGGNGSYSGLADTA 270
           +    Y  + + L           ++R      L+  +                      
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN------------VL 154

Query: 271 VHGVIFIGK--------------CSFSCRKLFWV-----------LRIVSNF--GISKDC 303
           + GV+  GK              C     K+FW+           L ++      I  + 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 304 RAGLENMIGGMLD----KATLDDLLVSGQGYGNGHD--RGVYDVNLVIRLI----RIFVN 353
            +  ++     L     +A L  LL S + Y N       V +            +I + 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAK-AWNAFNLSCKILLT 271

Query: 354 S-NSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTV-PKFLGV-AESLPDSARECFDGV 410
           +     +D + +        L    +  ++PD+  ++  K+L    + LP   RE     
Sbjct: 272 TRFKQVTDFLSAATTTHI-SLDHHSMT-LTPDEVKSLLLKYLDCRPQDLP---RE----- 321

Query: 411 YRAVDIYLESHP-TLS-FKE--RSELCRCLNYKKL-------TLEAS------------- 446
              +      +P  LS   E  R  L    N+K +        +E+S             
Sbjct: 322 --VLTT----NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 447 KYLA---KNPKIPPNV-----------AIQALMSQ-HSKL-----PTKDEFSYH--QSDT 484
             L+    +  IP  +            +  ++++ H        P +   S      + 
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 485 KRKIDPSTKNSQVVL--YN--------GAGAGVIDD---------------TERFSGENE 519
           K K++      + ++  YN              +D                 ER +    
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFR 494

Query: 520 NVRLNLQTMQRRVR 533
            V L+ + +++++R
Sbjct: 495 MVFLDFRFLEQKIR 508
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.82
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.81
2vpk_A116 Myoneurin; transcription regulation, transcription 99.81
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.81
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.8
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.8
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.8
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.8
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.8
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.79
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.79
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.79
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.79
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.78
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.77
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.76
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.76
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.75
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.72
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.7
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.33
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.17
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.08
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.82
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.31
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.25
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.2
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.7
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.45
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 94.91
3kvt_A115 Potassium channel protein SHAW; tetramerization do 91.99
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 90.9
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 90.6
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 89.89
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 88.62
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 84.85
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=99.82  E-value=3.5e-20  Score=186.11  Aligned_cols=219  Identities=14%  Similarity=0.181  Sum_probs=156.8

Q ss_pred             CCCccEEEEec--CceeEechHHHHhhcCHHHHHhhc----ccCCCeEEec------CCCCCHHHHHHHHHHHhcCCccc
Q 008584            2 SQLCDIQIHVN--GHQTFFLNEQTITKYSERLKKIIK----QESRRVIEIK------GFPGGPTGFELVSRFCYNNGRIK   69 (560)
Q Consensus         2 ~~l~Dv~v~V~--g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L~------d~pgG~e~Felv~~FcYg~g~i~   69 (560)
                      ..+|||+|.|+  ++..|++||.+|+++|+||++||+    |+....|+|+      +++  +++|+.+++|+|| |++.
T Consensus        30 ~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~Yt-g~~~  106 (279)
T 3i3n_A           30 GLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYMYT-GRIR  106 (279)
T ss_dssp             TTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHHHH-SEEE
T ss_pred             CCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhhCc-CCcc
Confidence            36899999997  148999999999999999999998    3445689998      555  8999999999999 9999


Q ss_pred             cChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhC---cHHHHHHHHHHH
Q 008584           70 ITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCG---LVDKFICALLAK  146 (560)
Q Consensus        70 it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~---iv~rcidsla~k  146 (560)
                      ++.+||..|+.||++|+|++       |++.|++||.+.+..         .+|..++.+|+.++   +.++|.+-|+..
T Consensus       107 i~~~~v~~ll~~A~~l~i~~-------L~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~  170 (279)
T 3i3n_A          107 VSTGSVHEVLELADRFLLIR-------LKEFCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRN  170 (279)
T ss_dssp             EETTTHHHHHHHHHHTTCHH-------HHHHHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHCcHH-------HHHHHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999999996       999999999998854         57888888888887   344555555432


Q ss_pred             HccCCcccccccCCCCCCCCCCCCCccccccccCCCCCCCCcccCCCCCCCCCCCCCchhhhhcccChHHHHHHHHHHhh
Q 008584          147 IAQHSDLSLIIASPSTPSSSSSPETSYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGA  226 (560)
Q Consensus       147 a~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~~~rvi~am~~  226 (560)
                      ...                           .                          +--++...|+.+....++..=. 
T Consensus       171 f~~---------------------------v--------------------------~~~~~f~~L~~~~l~~lL~~d~-  196 (279)
T 3i3n_A          171 FHK---------------------------V--------------------------IQDEEFYTLPFHLIRDWLSDLE-  196 (279)
T ss_dssp             HHH---------------------------H--------------------------TTSSGGGGSCHHHHHHHHTCSS-
T ss_pred             HHH---------------------------H--------------------------hcCcChhcCCHHHHHHHhcCcC-
Confidence            210                           0                          0013445678887777775321 


Q ss_pred             hcCCCC-hhhHHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHhhccccCCCCccchhHHHHHHHHHHhcCCCHHHHH
Q 008584          227 YGAENN-SLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRA  305 (560)
Q Consensus       227 ~~~~~~-~~~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~r~llE~iv~lllp~~k~~~s~~fLf~lLr~a~~l~as~~cr~  305 (560)
                        -.+. ...+-.+++.|++...+            .++..+..+...+   -=..+|..+|..+++..-.+..++.|+.
T Consensus       197 --L~v~sE~~vf~av~~W~~~~~~------------~r~~~~~~ll~~V---Rf~l~~~~~L~~~v~~~~l~~~~~~c~~  259 (279)
T 3i3n_A          197 --ITVDSEEVLFETVLKWVQRNAE------------ERERYFEELFKLL---RLSQMKPTYLTRHVKPERLVANNEVCVK  259 (279)
T ss_dssp             --CCCSCHHHHHHHHHHHHHTTHH------------HHTTTHHHHHTTS---CGGGSCHHHHHHTTTTSHHHHTCHHHHH
T ss_pred             --CCCCCHHHHHHHHHHHHHcCHH------------HHHHHHHHHHHhc---CCCCCCHHHHHHHhhccchhcCCHHHHH
Confidence              2333 44566666666664321            1223334333321   1145789999998888878888999988


Q ss_pred             HHHHH
Q 008584          306 GLENM  310 (560)
Q Consensus       306 ~LE~r  310 (560)
                      -+..-
T Consensus       260 ~l~ea  264 (279)
T 3i3n_A          260 LVADA  264 (279)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77543
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.81
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.8
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.49
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.38
d3kvta_103 akv3.1 voltage-gated potassium channel {California 95.78
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.63
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.71
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 94.6
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 91.45
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3e-20  Score=164.43  Aligned_cols=93  Identities=18%  Similarity=0.347  Sum_probs=86.8

Q ss_pred             CCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHHHHH
Q 008584            3 QLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCS   82 (560)
Q Consensus         3 ~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~cAA   82 (560)
                      .+|||+|.|+| .+|++||.+|+++|+||++||... ..+|.+++++  |++|+.+++|+|| |++.++.+||..++.||
T Consensus        27 ~~~Dv~l~v~~-~~~~aHk~vLaa~S~~F~~lf~~~-~~~i~~~~v~--~~~f~~ll~~~Yt-g~i~l~~~~v~~ll~~A  101 (121)
T d1buoa_          27 TLCDVVIMVDS-QEFHAHRTVLACTSKMFEILFHRN-SQHYTLDFLS--PKTFQQILEYAYT-ATLQAKAEDLDDLLYAA  101 (121)
T ss_dssp             TTCCEEEEESS-CEEEECHHHHHHHCHHHHHHTTSC-CSEEEECSSC--HHHHHHHHHHHHH-SCCCCCGGGHHHHHHHH
T ss_pred             CcEeEEEEECC-EEEEEEHHHhcccChhhhhhccCc-cceeecCCCC--HHHHHHHHHheEc-cccCCcHHHHHHHHHHH
Confidence            68999999985 899999999999999999999754 3589999998  7999999999999 99999999999999999


Q ss_pred             hHhccccccCCcchHHHHHHHHHHh
Q 008584           83 IFLGMTDTVSSTNNLLQQTESFLEG  107 (560)
Q Consensus        83 e~LqMte~~~~~~NL~~~~e~FL~~  107 (560)
                      ++|+|++       |.+.|++||+.
T Consensus       102 ~~l~~~~-------L~~~C~~~L~~  119 (121)
T d1buoa_         102 EILEIEY-------LEEQCLKMLET  119 (121)
T ss_dssp             HHHTCHH-------HHHHHHHHHHH
T ss_pred             HHhCCHH-------HHHHHHHHHHh
Confidence            9999996       99999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure