Citrus Sinensis ID: 008585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
Protein Sequence
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERLERGRLRSFFSRK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcccccHHHHHHHHHHHHHHHHHHcHcHccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHcccHHHHHccc
Coil and Loop (DISEMBL)
mvedggngalaNIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEqipshlsdlsshpcfsknALCREQLQAVSKTLKEAIELAELCVKEKyegklrmqsDLDALsgkldlnlhdcglliktgvlgeatlplsvagsstdaeatthgNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAesgscenwlvsegvlpplirlvesgstvgkekATISLQRLSMSAEMARAIVghggvrplieicqtgdSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAyldgplpqesaVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTlpqncrevkrddksvpnlvqlldpspqntaKKYAVACLaslspskkcKKLMISYGAIGYlkklsemdIPGARKLLERLERgrlrsffsrk
Flexible Loop (DISEMBL)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLtatsprireKTVTVICSLAESGSCENWLVSEGVLPPLIRLVesgstvgkekaTISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLtasnenlrrsVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISslvtlpqncrevkrddksvpnlvqlldpspqntAKKYAVACLaslspskkckKLMISYGAIGYLKKLSEMDIPGARKLLerlergrlrsffsrk
Low Complexity Region (SEG)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKagslgaqqaaasalCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGArkllerlergrlrsffsrK
Disordered region (IsUnstruct)
***********NIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVA**************RELLARLQIGHLEAKHKALDSLVEAMK*DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC*************************KKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGAR*L****************
Disordered Region (DISOPRED)
**************SADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSH*****************EQLQAVSKTLKEAIELAEL*V********R*QSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLS*********ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ*TAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMD***ARKLLERLERGRLRSFFS**
Disordered Region (DISEMBL)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSV***********HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSL**********CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERLERGRLRSFFSRK
Disordered Region (DISPRO)
*******GALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLP********DAEA*THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERLERGR*RSF*S**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERLERGRLRSFFSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	560	2.2.26 [Sep-21-2011]
Q8GWV5	760	U-box domain-containing p	no	no	0.451	0.332	0.283	1e-14
O22193	826	U-box domain-containing p	no	no	0.483	0.328	0.264	1e-13
Q6CX49	579	Vacuolar protein 8 OS=Klu	yes	no	0.512	0.495	0.239	3e-09
Q9SNC6	660	U-box domain-containing p	no	no	0.516	0.437	0.258	7e-09
P39968	578	Vacuolar protein 8 OS=Sac	yes	no	0.380	0.368	0.264	5e-08
Q5VRH9	611	U-box domain-containing p	no	no	0.362	0.332	0.278	5e-08
Q6FJV1	582	Vacuolar protein 8 OS=Can	yes	no	0.558	0.537	0.236	1e-07
Q9FL17	550	U-box domain-containing p	no	no	0.316	0.321	0.242	2e-07
Q5EFZ4	556	Vacuolar protein 8 OS=Kom	yes	no	0.330	0.332	0.268	4e-07
Q9ZV31	654	U-box domain-containing p	no	no	0.494	0.423	0.242	1e-06

>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 129/268 (48%), Gaps = 15/268 (5%)

Query: 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265
           TA +  IR  T+  I +    G C       G + PL+ L+ S   + +E A  +L  LS
Sbjct: 490 TAAAAEIRHLTINSIENRVHIGRC-------GAITPLLSLLYSEEKLTQEHAVTALLNLS 542

Query: 266 MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVM 324
           +S      IV  G + PL+ +  TG+  ++  +A +L ++S +   R+ + +    +  +
Sbjct: 543 ISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQAL 602

Query: 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ-ESAVGA 383
           + LL  G   G K+ AA  L NL+ +++N  R +V    ++ L+  LD  L   + AV  
Sbjct: 603 VNLLGKGTFRGKKD-AASALFNLSITHDNKAR-IVQAKAVKYLVELLDPDLEMVDKAVAL 660

Query: 384 LRNL--VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEA 440
           L NL  VG   ++ ++  G  P LV  +  GS   ++ AAS L ++C  S +   LV + 
Sbjct: 661 LANLSAVGE-GRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQE 719

Query: 441 GCTPLLIKLLEAKPNSVREVAAQAISSL 468
           G  P L+ L ++     +E A Q +S  
Sbjct: 720 GAIPPLVALSQSGTQRAKEKAQQLLSHF 747

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 43/314 (13%)

Query: 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKT 216
           ++L+  L+   L+ + +A   L    K +  N + +     I  LV+LL +T    +E  
Sbjct: 544 KKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENA 603

Query: 217 VTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG 276
           VT + +L+ + + +  +   G + PLI ++E+GS+  KE +  +L  LS+  E    I  
Sbjct: 604 VTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQ 663

Query: 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGS 336
            G + PL+++   G    +  AA  L N+S   E + M+ + G V  +I L+D     G 
Sbjct: 664 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAA--GM 721

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVL 396
            + A   L NL         + + EG                      RN +G   QE  
Sbjct: 722 VDKAVAVLANL---------ATIPEG----------------------RNAIG---QE-- 745

Query: 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPN 455
              G  P LV V++ GS   ++ AA+AL ++ T S     +V + G  P L+ L ++   
Sbjct: 746 ---GGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTP 802

Query: 456 SVREVAAQAISSLV 469
             RE  AQA+ S  
Sbjct: 803 RARE-KAQALLSYF 815

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6CX49|VAC8_KLULA Vacuolar protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=VAC8 PE=3 SV=3

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
           A  E  +  ++ + R  +  ++ LLT   P+IR  +   + +LA +   +  +V  G L 
Sbjct: 72  AFAEITEKYVSPVSRDVLEPILMLLTNPDPQIRIASCAALGNLAVNNENKLLIVEMGGLE 131

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLI  ++S +   +  A   +  L+   +    I   G + PL ++ ++ +   Q  A  
Sbjct: 132 PLIEQMKSDNVEVQCNAVGCITNLATQDDNKIEIAQSGALVPLTKLARSSNIRVQRNATG 191

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
            L N++   E R+ L + G V V++ LL   +    + Y    L N+ A +E+ RR +  
Sbjct: 192 ALLNMTHSGENRKELVDAGAVPVLVSLLS-SMDADVQYYCTTALSNI-AVDESNRRYLSK 249

Query: 361 EGG--IRSLLAYLDGPLPQE--SAVGALRNLVGSVSQEV-LISLGFFPRLVHVLKAGSLG 415
                +  L++ ++   P+    A  ALRNL    + ++ ++  G  P LV ++++ SL 
Sbjct: 250 HAPKLVTKLVSLMNSTSPRVKCQATLALRNLASDTNYQLEIVRAGGLPDLVQLIQSDSLP 309

Query: 416 AQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471
              A+ + +  +      + L+ +AG  P L+KLL+ + +   E+   A+S+L  L
Sbjct: 310 LVLASVACIRNISIHPLNEGLIVDAGFLPPLVKLLDYQES--EEIQCHAVSTLRNL 363

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 17/306 (5%)

Query: 138 PLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSN 197
           P  V+  S+ AEA       +L+ RL  G+ E +  A   +    K +  N +A+     
Sbjct: 339 PRKVSSFSSPAEAN---KIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGA 395

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCEN---WLVSEGVLPPLIRLVESGSTVGK 254
           I  LV LL+    RI+E +VT + +L+    CEN    +VS G +P ++++++ GS   +
Sbjct: 396 IPLLVGLLSTPDSRIQEHSVTALLNLS---ICENNKGAIVSAGAIPGIVQVLKKGSMEAR 452

Query: 255 EKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314
           E A  +L  LS+  E    I   G + PL+ +   G    +  AA  L N+      +  
Sbjct: 453 ENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGK 512

Query: 315 LAEEGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-- 371
               G++  + +LL + G   G  + A   L  L++  E  +  + S   + SL+ ++  
Sbjct: 513 AIRAGVIPTLTRLLTEPGS--GMVDEALAILAILSSHPEG-KAIIGSSDAVPSLVEFIRT 569

Query: 372 DGPLPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429
             P  +E+A   L +L     Q ++ +  LG    L+ +   G+   ++ AA  L R+  
Sbjct: 570 GSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISR 629

Query: 430 SAEMKK 435
            AE +K
Sbjct: 630 LAEQQK 635

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P39968|VAC8_YEAST Vacuolar protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC8 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 10/223 (4%)

Query: 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES 226
           H+  +  A  +L+  M   E+N   ++    +  LV LL++T P ++    T + ++A  
Sbjct: 180 HIRVQRNATGALLN-MTHSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVD 238

Query: 227 GSCENWLVSEG--VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI 284
            +    L      ++  L+ L++S S+  K +AT++L+ L+        IV  GG+  L+
Sbjct: 239 EANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLV 298

Query: 285 EICQTGDSVSQ--AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAE 342
           ++ Q+ DS+    A+ AC ++NIS  P    ++ + G +  +++LLD       + +A  
Sbjct: 299 KLIQS-DSIPLVLASVAC-IRNISIHPLNEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVS 356

Query: 343 CLQNLTASNENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGA 383
            L+NL AS+E  R+     G +     LA LD P+  +S + A
Sbjct: 357 TLRNLAASSEKNRKEFFESGAVEKCKELA-LDSPVSVQSEISA 398

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 5/208 (2%)

Query: 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQA 296
           G +P L+ L+ S     +E A  +L  LS+      +IV    +  ++E+ +TG   ++ 
Sbjct: 365 GAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRE 424

Query: 297 AAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356
            AA TL ++S V E +  +   G +  +I LL  G   G K+ AA  + NL     N  R
Sbjct: 425 NAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKD-AATAIFNLCIYQGNKVR 483

Query: 357 SVVSEGGIRSLLAYLDGPLPQ--ESAVGALRNLVGSVSQEVLISLG-FFPRLVHVLKAGS 413
           +V + G +  L+ +L  P     + A+  L  L G+   +++I+     P LV V+K GS
Sbjct: 484 AVKA-GIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGS 542

Query: 414 LGAQQAAASALCRVCTSAEMKKLVGEAG 441
              ++ AA+ L  +C++   + L  +A 
Sbjct: 543 PRNRENAAAILWLLCSADTEQTLAAKAA 570

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6FJV1|VAC8_CANGA Vacuolar protein 8 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VAC8 PE=3 SV=3

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 30/343 (8%)

Query: 155 NTRELLARLQIGHLEAKH----------KALDSLVE------------AMKEDEKNVLAV 192
           N RE +  L +G+LE K           KAL +LV             A  E  +  +  
Sbjct: 23  NEREAVTLL-LGYLEDKDRLDFYSGGPLKALTTLVYSDNLNLQRSAALAFAEVTEKYVRQ 81

Query: 193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTV 252
           + R  +  ++ LL +  P+I+      + +LA +   +  +V  G L PLI  +   +  
Sbjct: 82  VSRDVLEPILILLQSQDPQIQVAACAALGNLAVNNENKLLIVDMGGLEPLINQMMGTNVE 141

Query: 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312
            +  A   +  L+   +    I   G + PL ++ ++     Q  A   L N++   E R
Sbjct: 142 VQCNAVGCITNLATRDDNKHKIATSGALVPLTKLAKSKHIRVQRNATGALLNMTHSEENR 201

Query: 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS-LLAYL 371
           + L   G V V++ LL        + Y    L N+     N ++   +E  + S L++ +
Sbjct: 202 RELVNAGAVPVLVSLLSSND-PDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLM 260

Query: 372 DGPLPQE--SAVGALRNLVGSVSQEV-LISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428
           D P  +    A  ALRNL    S ++ ++  G  P LV+++++ S+    A+ + +  + 
Sbjct: 261 DSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVNLIQSESVPLILASVACIRNIS 320

Query: 429 TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471
                + L+ +AG  P L+KLL+ + +   E+   A+S+L  L
Sbjct: 321 IHPLNEGLIVDAGFLPPLVKLLDYRDS--EEIQCHAVSTLRNL 361

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 91/177 (51%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           LL +L+   +    +AL S+    + DE + +++     I+AL  L+ +    ++     
Sbjct: 233 LLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKSLIVSRYATVQVNVTA 292

Query: 219 VICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG 278
           V+ +L+   S +  +V  G++PPLI +++ GS   +E +   +  L++  E   AI   G
Sbjct: 293 VLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFSLALEDENKTAIGVLG 352

Query: 279 GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLG 335
           G+ PL+ + + G  +++  +A  L ++S V   R  L + G V +++ ++  G ++G
Sbjct: 353 GLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQMLLGMVSLGQMIG 409

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 100/190 (52%), Gaps = 5/190 (2%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSE-GVLPPLIRLVESGSTVGKE 255
           +  LVQLL++T P ++    T + ++A + G+ +    +E  ++  L++L++S S   + 
Sbjct: 211 VPILVQLLSSTDPDVQYYCTTALSNIAVDEGNRKKLASTEPKLISQLVQLMDSTSPRVQC 270

Query: 256 KATISLQRLSMSAEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQM 314
           +AT++L+ L+  A     IV  GG+  L+ +   T   +  AA AC ++NIS  P    +
Sbjct: 271 QATLALRNLASDANYQLEIVRAGGLPNLVTLLNSTHQPLVLAAVAC-IRNISIHPLNEAL 329

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA-YLDG 373
           + + G +  ++ LLD    +  + +A   L+NL AS+E  R +++  G +       L+ 
Sbjct: 330 IIDAGFLKPLVSLLDYNDNVEIQCHAVSTLRNLAASSERNRLALLESGAVEKCEKLVLNS 389

Query: 374 PLPQESAVGA 383
           P+  +S + A
Sbjct: 390 PISVQSEISA 399

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Pichia pastoris (taxid: 4922)

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 16/293 (5%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPR 211
           H    ELL +L     E +  A   +    K++  N +A+     I  LV LLT +   R
Sbjct: 354 HNKIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSR 413

Query: 212 IREKTVTVICSLAESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM 270
            +E  VT I +L+     +  +V S G +P ++ +++ GS   +E A  +L  LS+  E 
Sbjct: 414 TQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDEN 473

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL-- 328
              I   G + PL+ +   G    +  AA  L N+      +      G+V V+++LL  
Sbjct: 474 KVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTE 533

Query: 329 -DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL--DGPLPQESAVGALR 385
            + G++  S    A     + +S+ + +  V +   +  L+ ++    P  +E++   L 
Sbjct: 534 PESGMVDESLSILA-----ILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLV 588

Query: 386 NLVGSVSQEVLIS---LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435
           +L  S +Q+ LI    LG    L+ + + G+   ++ AA  L R     + +K
Sbjct: 589 HLC-SWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQK 640

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	560
224130144	560	predicted protein [Populus trichocarpa]	1.0	1.0	0.871	0.0
225453748	560	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.857	0.0
147822343	560	hypothetical protein VITISV_031028 [Viti	1.0	1.0	0.857	0.0
255541460	561	ubiquitin-protein ligase, putative [Rici	1.0	0.998	0.875	0.0
224063965	560	predicted protein [Populus trichocarpa]	1.0	1.0	0.853	0.0
356506300	565	PREDICTED: U-box domain-containing prote	0.976	0.968	0.853	0.0
356522654	565	PREDICTED: vacuolar protein 8-like [Glyc	0.998	0.989	0.822	0.0
356532060	559	PREDICTED: vacuolar protein 8-like [Glyc	0.998	1.0	0.830	0.0
353685488	556	armadillo [Phaseolus vulgaris]	0.992	1.0	0.835	0.0
449454484	565	PREDICTED: armadillo repeat-containing p	1.0	0.991	0.798	0.0

>gi|224130144|ref|XP_002320763.1| predicted protein [Populus trichocarpa] gi|222861536|gb|EEE99078.1| predicted protein [Populus trichocarpa]

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/560 (87%), Positives = 521/560 (93%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVED G   L +IQS ++WL HAQELVPVA++KAR++KGFPGRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDRGKEVLVDIQSVEDWLSHAQELVPVALDKAREVKGFPGRWKMIISKLEQIPSRLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCF KNALC+EQLQAVSKTLKEAIELA LC+ E Y GKLRMQSDLDALSGKLDLNL
Sbjct: 61  LSSHPCFFKNALCKEQLQAVSKTLKEAIELAGLCMGENYGGKLRMQSDLDALSGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEATLPL+VA SST+ EA  H NTRELLARLQIGHLEAKH+ALD+LVE
Sbjct: 121 RDCGLLIKTGVLGEATLPLAVASSSTEPEAAIHSNTRELLARLQIGHLEAKHRALDTLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEK VLAV+GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG+LP
Sbjct: 181 VMKEDEKAVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGLLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGSTVGKEKATISLQRLSMSAE ARAIVGHGG+RPLIEIC+TGDSVSQAAAAC
Sbjct: 241 PLIRLVESGSTVGKEKATISLQRLSMSAETARAIVGHGGIRPLIEICRTGDSVSQAAAAC 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ LAEEGIV VMI LLDCGILLGSKEYAAECLQNLTASN+NL+R+V+S
Sbjct: 301 TLKNISAVPEVRQNLAEEGIVKVMINLLDCGILLGSKEYAAECLQNLTASNDNLKRAVIS 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGGIRSLL YLDGPLPQESAVGALRNLV SVS E+LIS GF PRLVHVLK+GSLGAQQAA
Sbjct: 361 EGGIRSLLVYLDGPLPQESAVGALRNLVSSVSTEMLISYGFLPRLVHVLKSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           ASA+CRVCTSAEMKKLVGEAGC PLLIKLLEAK NSVREV+AQAISSLV+L QN R VKR
Sbjct: 421 ASAICRVCTSAEMKKLVGEAGCIPLLIKLLEAKSNSVREVSAQAISSLVSLSQNRRVVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540
           DDKSVPNLVQLLDP PQNTAKKYAVA LASL+ +KKCKKLMISYGAIGYLKKL+EMDIPG
Sbjct: 481 DDKSVPNLVQLLDPIPQNTAKKYAVASLASLASTKKCKKLMISYGAIGYLKKLTEMDIPG 540

Query: 541 ARKLLERLERGRLRSFFSRK 560
           ++KLLERLERG+LRS FS+K
Sbjct: 541 SKKLLERLERGKLRSLFSKK 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453748|ref|XP_002269981.1| PREDICTED: uncharacterized protein LOC100250612 [Vitis vinifera]

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/560 (85%), Positives = 518/560 (92%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDGG+  LA+ QSAD+ L  AQELVPVA++ +R++KGF GRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDGGDEFLADNQSADKLLARAQELVPVALDNSREVKGFLGRWKMIISKLEQIPSCLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKN LC+EQLQAV +TLKE IELAELC+KEKYEGKLRMQSDLD L GKLDLNL
Sbjct: 61  LSSHPCFSKNTLCKEQLQAVLRTLKETIELAELCIKEKYEGKLRMQSDLDGLIGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLL+KTGVLGEA +PL+VAGSS + EA TH N RE LARLQIGHLEAKHKALDSLVE
Sbjct: 121 RDCGLLVKTGVLGEAMMPLTVAGSSAEPEAGTHSNIREFLARLQIGHLEAKHKALDSLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEKNVLAV+GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP
Sbjct: 181 VMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGS VGKEKATISLQRLSMSAE AR+IVGHGGVRPLIEICQT DSVSQAAAA 
Sbjct: 241 PLIRLVESGSAVGKEKATISLQRLSMSAETARSIVGHGGVRPLIEICQTSDSVSQAAAAS 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKN+S VPEVRQ LAEEGI+ VMI LLDCGILLGSKEYAAECLQNLTASNENLRRSV++
Sbjct: 301 TLKNLSVVPEVRQTLAEEGIIKVMINLLDCGILLGSKEYAAECLQNLTASNENLRRSVIT 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSVS EVL+SLGF PRLVHVLK+GSLGAQQAA
Sbjct: 361 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVSMEVLVSLGFLPRLVHVLKSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           ASA+CRVC+S EMKKLVGEAGC PLL+K+LEAK NSVREVA+QA+S LV + QNC+EVKR
Sbjct: 421 ASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKTNSVREVASQALSGLVAISQNCKEVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540
            DKSVPNLVQLLDPSPQNTAKKYAV+CLA+LS SKKCKKLMISYGAIGYLKKL+EMDIPG
Sbjct: 481 GDKSVPNLVQLLDPSPQNTAKKYAVSCLAALSSSKKCKKLMISYGAIGYLKKLNEMDIPG 540

Query: 541 ARKLLERLERGRLRSFFSRK 560
           A+KLLERLERG+LRS F+RK
Sbjct: 541 AKKLLERLERGKLRSLFTRK 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822343|emb|CAN66207.1| hypothetical protein VITISV_031028 [Vitis vinifera]

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/560 (85%), Positives = 517/560 (92%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDGG+  LA+ QSAD+ L  AQELVPVA++  R++KGF GRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDGGDEFLADNQSADKLLARAQELVPVALDNXREVKGFLGRWKMIISKLEQIPSCLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKN LC+EQLQAV +TLKE IELAELC+KEKYEGKLRMQSDLD L GKLDLNL
Sbjct: 61  LSSHPCFSKNTLCKEQLQAVLRTLKETIELAELCIKEKYEGKLRMQSDLDGLIGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLL+KTGVLGEA +PL+VAGSS + EA TH N RE LARLQIGHLEAKHKALDSLVE
Sbjct: 121 RDCGLLVKTGVLGEAMMPLTVAGSSAEPEAGTHSNIREFLARLQIGHLEAKHKALDSLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEKNVLAV+GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP
Sbjct: 181 VMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGS VGKEKATISLQRLSMSAE AR+IVGHGGVRPLIEICQT DSVSQAAAA 
Sbjct: 241 PLIRLVESGSAVGKEKATISLQRLSMSAETARSIVGHGGVRPLIEICQTSDSVSQAAAAS 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKN+S VPEVRQ LAEEGI+ VMI LLDCGILLGSKEYAAECLQNLTASNENLRRSV++
Sbjct: 301 TLKNLSVVPEVRQTLAEEGIIKVMINLLDCGILLGSKEYAAECLQNLTASNENLRRSVIT 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSVS EVL+SLGF PRLVHVLK+GSLGAQQAA
Sbjct: 361 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVSMEVLVSLGFLPRLVHVLKSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           ASA+CRVC+S EMKKLVGEAGC PLL+K+LEAK NSVREVA+QA+S LV + QNC+EVKR
Sbjct: 421 ASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKTNSVREVASQALSXLVAISQNCKEVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540
            DKSVPNLVQLLDPSPQNTAKKYAV+CLA+LS SKKCKKLMISYGAIGYLKKL+EMDIPG
Sbjct: 481 GDKSVPNLVQLLDPSPQNTAKKYAVSCLAALSSSKKCKKLMISYGAIGYLKKLNEMDIPG 540

Query: 541 ARKLLERLERGRLRSFFSRK 560
           A+KLLERLERG+LRS F+RK
Sbjct: 541 AKKLLERLERGKLRSLFTRK 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541460|ref|XP_002511794.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223548974|gb|EEF50463.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/561 (87%), Positives = 523/561 (93%), Gaps = 1/561 (0%)

Query: 1   MVEDGGNGALA-NIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLS 59
           MVED G   +  +IQS ++WL HAQELVP+A++KAR++KGFPGRWKMIISKLEQIPSHLS
Sbjct: 1   MVEDRGKAVIEEDIQSVEDWLSHAQELVPLALDKAREVKGFPGRWKMIISKLEQIPSHLS 60

Query: 60  DLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLN 119
           DLSSHPCFSKNALC+EQLQAVSKTLKEAIELAELCV EKYEGKLRMQSDLDALSGKLDLN
Sbjct: 61  DLSSHPCFSKNALCKEQLQAVSKTLKEAIELAELCVGEKYEGKLRMQSDLDALSGKLDLN 120

Query: 120 LHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLV 179
           L DCGLLIKTGVLGE TLPL+VAGSST+ EA  H N REL ARLQIGHLEAKHKALDSLV
Sbjct: 121 LRDCGLLIKTGVLGEVTLPLAVAGSSTEPEAAIHSNIRELFARLQIGHLEAKHKALDSLV 180

Query: 180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239
           E MKEDEK VLAV+GRSNIAALVQLLTATSPR+REKTVTVICSLAESGSCENWLVSEGVL
Sbjct: 181 EVMKEDEKTVLAVLGRSNIAALVQLLTATSPRMREKTVTVICSLAESGSCENWLVSEGVL 240

Query: 240 PPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299
           PPLIRLVESGS VGKEKATISLQRLSMS E ARAIVGHGGVRPLIEIC+TGDSVSQAAAA
Sbjct: 241 PPLIRLVESGSIVGKEKATISLQRLSMSTETARAIVGHGGVRPLIEICRTGDSVSQAAAA 300

Query: 300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359
           CTLKNIS VPEVRQ LAEEGIV +MI LLDCGILLGSKEYAAECLQNLTA+N+NLRR V+
Sbjct: 301 CTLKNISVVPEVRQNLAEEGIVKIMINLLDCGILLGSKEYAAECLQNLTATNDNLRRIVI 360

Query: 360 SEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419
           SEGGIRSLLAYLDGPLPQESAVGALRNLV SVS E L++L F PRLVHVLK+GSLGAQQA
Sbjct: 361 SEGGIRSLLAYLDGPLPQESAVGALRNLVSSVSMEQLVTLNFLPRLVHVLKSGSLGAQQA 420

Query: 420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK 479
           AASA+CRVC+S EMKKLVGEAGC PLLIKLLEAK NSVRE +AQAISSLV+LPQNCREVK
Sbjct: 421 AASAICRVCSSTEMKKLVGEAGCIPLLIKLLEAKSNSVREASAQAISSLVSLPQNCREVK 480

Query: 480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIP 539
           ++DKSVPNLVQLLDPSPQNTAKKYAV+CLASLS SKKCKKLMISYGAIGYLKKL+EMDIP
Sbjct: 481 KNDKSVPNLVQLLDPSPQNTAKKYAVSCLASLSSSKKCKKLMISYGAIGYLKKLTEMDIP 540

Query: 540 GARKLLERLERGRLRSFFSRK 560
           GA+KLLERLERG+LRS FSRK
Sbjct: 541 GAKKLLERLERGKLRSLFSRK 561

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063965|ref|XP_002301324.1| predicted protein [Populus trichocarpa] gi|222843050|gb|EEE80597.1| predicted protein [Populus trichocarpa]

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/560 (85%), Positives = 515/560 (91%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVED G   + +IQS ++WL HAQELVPVAV+KAR++KGFPGRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDRGKEVVVDIQSVEDWLCHAQELVPVAVDKAREVKGFPGRWKMIISKLEQIPSRLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKN+LC+EQLQAVSKTLKEAIELA LC+ E Y GKLR QSDLDALSGKLDLNL
Sbjct: 61  LSSHPCFSKNSLCKEQLQAVSKTLKEAIELAILCMGENYCGKLRTQSDLDALSGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEAT+P +VAGSST+ EA  H NTRELLARLQIGHLEAKH+ALD+LVE
Sbjct: 121 RDCGLLIKTGVLGEATMPSAVAGSSTEPEAAIHSNTRELLARLQIGHLEAKHRALDTLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEK VLAVMGRSNIAALVQLLTATSP IREKTVT ICSLAESGSCENWLVSEGVLP
Sbjct: 181 VMKEDEKTVLAVMGRSNIAALVQLLTATSPCIREKTVTAICSLAESGSCENWLVSEGVLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGSTVGKEKATISLQRLSMS E ARAIVGHGGVRPLIEIC+TGDSVSQAAAAC
Sbjct: 241 PLIRLVESGSTVGKEKATISLQRLSMSTETARAIVGHGGVRPLIEICRTGDSVSQAAAAC 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ LAEEGIV VMI LLDCGILLGSKEYAAECLQNLTASN+NL+R+V+S
Sbjct: 301 TLKNISAVPEVRQDLAEEGIVKVMINLLDCGILLGSKEYAAECLQNLTASNDNLKRAVIS 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGGIRSLL YLDGPLPQESAVGALRNLV S+S E+L+S  F PRLVHVL++GSLGAQQAA
Sbjct: 361 EGGIRSLLVYLDGPLPQESAVGALRNLVSSISMEMLVSYCFLPRLVHVLRSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           A+A+CRVCTSA+MKKLVGEAGC PLLIKLLEAK NSVREV+AQAISSLV+L  N REVKR
Sbjct: 421 ATAICRVCTSADMKKLVGEAGCIPLLIKLLEAKSNSVREVSAQAISSLVSLSHNRREVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540
           DDKSVPNLVQLLDPSPQNTAKKYAVA LASL+ SKK K+LMISYGAIGYLKKL+EMDIPG
Sbjct: 481 DDKSVPNLVQLLDPSPQNTAKKYAVASLASLASSKKRKRLMISYGAIGYLKKLTEMDIPG 540

Query: 541 ARKLLERLERGRLRSFFSRK 560
           A+KLLERLE+ +LRS F +K
Sbjct: 541 AKKLLERLEKRKLRSLFGKK 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506300|ref|XP_003521923.1| PREDICTED: U-box domain-containing protein 12-like [Glycine max]

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/547 (85%), Positives = 504/547 (92%)

Query: 14  QSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALC 73
           +S ++WLLHAQELVPVA+  AR++KGFPGRWKMIIS LEQIPS LSDLSSHPCFSKNALC
Sbjct: 19  RSTEDWLLHAQELVPVALANAREVKGFPGRWKMIISNLEQIPSRLSDLSSHPCFSKNALC 78

Query: 74  REQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLG 133
           +EQLQAVSKTLKEA+ELAELCVKEKYEGKLRMQSDLDAL GKLDLNL DCGLLIKTGVLG
Sbjct: 79  KEQLQAVSKTLKEAVELAELCVKEKYEGKLRMQSDLDALIGKLDLNLKDCGLLIKTGVLG 138

Query: 134 EATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM 193
           EATLPL+V GS  +++  TH N RELLARLQIGHLEAKHKALD L + MKEDEKNVLAV 
Sbjct: 139 EATLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVF 198

Query: 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVG 253
           GRSNI+ALVQLLTATSPRIREKTVTVICSL ESGSCE WLVSEGVLPPLIRLVESGS VG
Sbjct: 199 GRSNISALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVG 258

Query: 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313
           KEKAT+SLQRLSMSAE  RAIVGHGGVRPLIEICQ+GDSVSQAAAACTL N+SAVPEVRQ
Sbjct: 259 KEKATLSLQRLSMSAETTRAIVGHGGVRPLIEICQSGDSVSQAAAACTLTNVSAVPEVRQ 318

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373
            LAEEGIV VMI LL+CGILLGSKEYAAECLQNLT SNE LR+SV+SEGG+RSLLAYLDG
Sbjct: 319 ALAEEGIVRVMISLLNCGILLGSKEYAAECLQNLTLSNEYLRKSVISEGGVRSLLAYLDG 378

Query: 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEM 433
           PLPQESAVGAL+NL+GSVS+E L+SLG  P LVHVLK+GSLGAQQAAAS +CRVC+S EM
Sbjct: 379 PLPQESAVGALKNLIGSVSEETLVSLGLVPCLVHVLKSGSLGAQQAAASIICRVCSSMEM 438

Query: 434 KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLD 493
           KK+VGEAGC PLLIK+LEAK N+ REVAAQAISSL+ L QN REVK+DDKSVPNLVQLLD
Sbjct: 439 KKIVGEAGCIPLLIKMLEAKANNAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLD 498

Query: 494 PSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERLERGRL 553
           PSPQNTAKKYAV+CL SLSPSKKCKKLMISYGAIGYLKKL+EMDIPGA+KLLERLERG+L
Sbjct: 499 PSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKL 558

Query: 554 RSFFSRK 560
           RS FSRK
Sbjct: 559 RSLFSRK 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522654|ref|XP_003529961.1| PREDICTED: vacuolar protein 8-like [Glycine max]

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/559 (82%), Positives = 506/559 (90%)

Query: 2   VEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDL 61
           V    + A    +S ++WLLHAQELVPVA+  AR++KGFPGRWKMIISKLEQIP  LSDL
Sbjct: 7   VSKDKDAAAFEARSTEDWLLHAQELVPVALANAREVKGFPGRWKMIISKLEQIPLRLSDL 66

Query: 62  SSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLH 121
           SSHPCFS+NALC+EQLQAVSKTL+EAIELAELCVKEKYEGKLRMQSDLDAL GKLDLNL 
Sbjct: 67  SSHPCFSRNALCKEQLQAVSKTLREAIELAELCVKEKYEGKLRMQSDLDALIGKLDLNLK 126

Query: 122 DCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEA 181
           DCGLLIKTGVLGEA+LPL+V GS  +++  TH N RELLARLQIGHLEAKHKALD L + 
Sbjct: 127 DCGLLIKTGVLGEASLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDV 186

Query: 182 MKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPP 241
           MKEDEKNVLA+ GRSN+AALVQLLTATSPRIREKTV+VICSL ESGSCE WLVSEGVLPP
Sbjct: 187 MKEDEKNVLAIFGRSNVAALVQLLTATSPRIREKTVSVICSLVESGSCEKWLVSEGVLPP 246

Query: 242 LIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301
           LIRLVESGS VGKEKAT+SLQRLSMSAE  RAIVGHGGV+PLIE+CQ GDSVSQAAAACT
Sbjct: 247 LIRLVESGSAVGKEKATVSLQRLSMSAETTRAIVGHGGVQPLIELCQNGDSVSQAAAACT 306

Query: 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE 361
           L N+SAVPEVRQ LAEEGIV VMI LL+ GILLGSKEYAAECLQNLT+SNE+LR+SVVSE
Sbjct: 307 LTNVSAVPEVRQALAEEGIVRVMINLLNYGILLGSKEYAAECLQNLTSSNEHLRKSVVSE 366

Query: 362 GGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA 421
           GG+RSLLAYLDGPLPQESAVGAL+NLVGSVS+E L+SLG  P LVHVLK+GSLGAQQA+A
Sbjct: 367 GGVRSLLAYLDGPLPQESAVGALKNLVGSVSEETLVSLGLVPCLVHVLKSGSLGAQQASA 426

Query: 422 SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481
           S +CRVC+S EMKK+VGEAGC PLLIK+L+AK N+ REVAAQAISSL+ L QN REVK+D
Sbjct: 427 SIICRVCSSMEMKKIVGEAGCIPLLIKMLDAKSNTAREVAAQAISSLMVLSQNRREVKKD 486

Query: 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGA 541
           DKSVPNLVQLLDPSPQNTAKKYAV+CL SLSPSKKCKKLMISYGAIGYLKKL+EMDI GA
Sbjct: 487 DKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIVGA 546

Query: 542 RKLLERLERGRLRSFFSRK 560
           +KLL+RLERG+LRS FSRK
Sbjct: 547 KKLLQRLERGKLRSLFSRK 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532060|ref|XP_003534592.1| PREDICTED: vacuolar protein 8-like [Glycine max]

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/560 (83%), Positives = 515/560 (91%), Gaps = 1/560 (0%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDG   A+ + +S ++WLLHAQELVPV ++KAR++KGF GRWKMI++KLEQIP  LSD
Sbjct: 1   MVEDGDEVAV-DARSTEDWLLHAQELVPVVIDKAREVKGFAGRWKMIVAKLEQIPLRLSD 59

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKNALC+EQLQAVSKTL EAIELAELC+KEKYEGKLRMQSDLD+LSGKLDLNL
Sbjct: 60  LSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCLKEKYEGKLRMQSDLDSLSGKLDLNL 119

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEATLPL+V+ S  +++  T+ N RELLARLQIGHLEAKH+ALDS+VE
Sbjct: 120 RDCGLLIKTGVLGEATLPLAVSSSVAESDVATYNNIRELLARLQIGHLEAKHRALDSVVE 179

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
           AMKEDEK+VL+V+GRSNIAALVQLLTATSPRIREKTVTVI SLAESGSCENWLVSEGVLP
Sbjct: 180 AMKEDEKSVLSVLGRSNIAALVQLLTATSPRIREKTVTVISSLAESGSCENWLVSEGVLP 239

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGSTVGKEKATISLQRLSMSAE ARAIVGH GVRPL+E+CQ GDSVSQAAAAC
Sbjct: 240 PLIRLVESGSTVGKEKATISLQRLSMSAETARAIVGHSGVRPLVELCQIGDSVSQAAAAC 299

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ LAEEGIV VMI LL+CGILLGSKE+AAECLQNLTASNENLRR+V+S
Sbjct: 300 TLKNISAVPEVRQALAEEGIVRVMINLLNCGILLGSKEHAAECLQNLTASNENLRRNVIS 359

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSV +E L+SLG  PRL HVLK+GSLGAQQAA
Sbjct: 360 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLIPRLAHVLKSGSLGAQQAA 419

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           A+A+CRVC+S +MKK+VGEAGC PLL+K+LEAK NSVREVAAQAI+SL+ + QN REVK+
Sbjct: 420 AAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSVREVAAQAIASLMVVSQNRREVKK 479

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540
           DDKSVPNLVQLLD SPQNTAKKYAV CL SLS  KKCKKLMISYGAIGYLKKL+EMDIPG
Sbjct: 480 DDKSVPNLVQLLDHSPQNTAKKYAVTCLGSLSSCKKCKKLMISYGAIGYLKKLTEMDIPG 539

Query: 541 ARKLLERLERGRLRSFFSRK 560
           A+KL ERLERG+ RS FS+K
Sbjct: 540 AKKLHERLERGKFRSLFSKK 559

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685488|gb|AER13165.1| armadillo [Phaseolus vulgaris]

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/560 (83%), Positives = 513/560 (91%), Gaps = 4/560 (0%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDG      + +S +EWLLHAQELVPV +EKAR++KGF GRWKMII+KLEQIPS LSD
Sbjct: 1   MVEDGDA---VDARSTEEWLLHAQELVPVVLEKAREVKGFAGRWKMIIAKLEQIPSRLSD 57

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKNALC+EQLQAVSKTL EAIELAELC+KEKYEGKLRMQSDLDAL+GKLDLNL
Sbjct: 58  LSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCMKEKYEGKLRMQSDLDALTGKLDLNL 117

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEATLPL+V+ S  +++   H N RELLARLQIGHLEAKH+ALDS+VE
Sbjct: 118 RDCGLLIKTGVLGEATLPLAVSSSVAESDVAAH-NIRELLARLQIGHLEAKHQALDSVVE 176

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
           AMKEDEK+VLA +GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP
Sbjct: 177 AMKEDEKSVLAALGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 236

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGS VGKEKATISLQRLSMSAE AR IVGHGGV PL+E+CQ GDSVSQAAAAC
Sbjct: 237 PLIRLVESGSAVGKEKATISLQRLSMSAETAREIVGHGGVPPLVELCQIGDSVSQAAAAC 296

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ L+EEGIV +MI LL+CGILLGSKE+AAECLQNLTASNENLRRSV+S
Sbjct: 297 TLKNISAVPEVRQTLSEEGIVRIMINLLNCGILLGSKEHAAECLQNLTASNENLRRSVIS 356

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSV +E L+SLG  PRLVHVLK+GSLGAQQAA
Sbjct: 357 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLVPRLVHVLKSGSLGAQQAA 416

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
            +A+CRVC+S +MKK+VGEAGC PLL+K+LEAK NS REVAAQAI+SL+ + QN REVK+
Sbjct: 417 VAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLIVVSQNTREVKK 476

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540
           DDKSVPNLVQLLDPSPQNTAKKYAV CL SLS SKKCKKLMISYGAIGYLKKL+EMDIPG
Sbjct: 477 DDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPG 536

Query: 541 ARKLLERLERGRLRSFFSRK 560
           A+KL ERLERG+LRS FS+K
Sbjct: 537 AKKLHERLERGKLRSLFSKK 556

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454484|ref|XP_004144984.1| PREDICTED: armadillo repeat-containing protein 3-like [Cucumis sativus] gi|449472474|ref|XP_004153606.1| PREDICTED: armadillo repeat-containing protein 3-like [Cucumis sativus]

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/565 (79%), Positives = 509/565 (90%), Gaps = 5/565 (0%)

Query: 1   MVEDGG-----NGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIP 55
           MVE+G       G  +  +SA+EWLL AQ+LVPVA+EKA ++K FPGRWKMI+SKLEQ+P
Sbjct: 1   MVEEGSVHRSSGGTDSEAESAEEWLLQAQKLVPVALEKALEVKVFPGRWKMIVSKLEQLP 60

Query: 56  SHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGK 115
           S LSDLSSHPCFSKN LC+EQLQAV  +LKE +ELA+LCV+EK+EGKLR+QSDLD+LSGK
Sbjct: 61  SRLSDLSSHPCFSKNVLCKEQLQAVLNSLKETVELAKLCVREKFEGKLRIQSDLDSLSGK 120

Query: 116 LDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKAL 175
           LDLNL DCGLLIKTGVLGEATLPL ++G S+  E+T +GN RELLARLQIGH+EAKH+AL
Sbjct: 121 LDLNLRDCGLLIKTGVLGEATLPLPLSGCSSQWESTDYGNIRELLARLQIGHMEAKHRAL 180

Query: 176 DSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235
           DSLVE +KED+ NVL++ GR+N+AALVQLLTATS  IREKT+ +IC LAESGSCENWLVS
Sbjct: 181 DSLVEIIKEDDDNVLSIFGRNNVAALVQLLTATSLCIREKTINLICLLAESGSCENWLVS 240

Query: 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ 295
           EGVLPPLIRLVESG+ V KEKA ISLQRLSMSA+ ARAIVGHGGVRPLIE+C+TGDSVSQ
Sbjct: 241 EGVLPPLIRLVESGTAVAKEKAVISLQRLSMSADTARAIVGHGGVRPLIELCKTGDSVSQ 300

Query: 296 AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355
           AAAACTLKNISAVPEVRQ LAEEGI+ VMI L+DCGILLGSKEYAAECLQNLTASNE+LR
Sbjct: 301 AAAACTLKNISAVPEVRQTLAEEGIIRVMISLVDCGILLGSKEYAAECLQNLTASNESLR 360

Query: 356 RSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLG 415
           RSV+SEGG+R +LAYLDGPLPQESAVGALRN+V SVS E+L+SLGF PRLVHVLK+GS+G
Sbjct: 361 RSVISEGGLRCILAYLDGPLPQESAVGALRNIVSSVSMELLLSLGFLPRLVHVLKSGSVG 420

Query: 416 AQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC 475
           AQQAAASA+CRVC + EMKKL+GEA C PLLIKLLE+K NSVREVAAQAISSLVTL QNC
Sbjct: 421 AQQAAASAICRVCNTPEMKKLIGEAECIPLLIKLLESKSNSVREVAAQAISSLVTLSQNC 480

Query: 476 REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSE 535
           REVKRD+KSVPNLVQLLDP PQNTAKKYAVACL SLS S+KCKKLMISYGAIGYLKKLSE
Sbjct: 481 REVKRDEKSVPNLVQLLDPIPQNTAKKYAVACLVSLSSSRKCKKLMISYGAIGYLKKLSE 540

Query: 536 MDIPGARKLLERLERGRLRSFFSRK 560
           MD PG++KLLE+LERG+LRS F RK
Sbjct: 541 MDTPGSKKLLEKLERGKLRSLFGRK 565

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	560
TAIR|locus:2043709	553	AT2G45720 "AT2G45720" [Arabido	0.951	0.963	0.684	4.6e-192
TAIR|locus:2198235	574	AT1G01830 "AT1G01830" [Arabido	0.95	0.926	0.636	1.6e-173
TAIR|locus:2157358	555	AT5G50900 [Arabidopsis thalian	0.941	0.949	0.371	8.5e-81
TAIR|locus:2056529	580	AT2G05810 "AT2G05810" [Arabido	0.894	0.863	0.339	5e-60
TAIR|locus:2197654	573	AT1G61350 [Arabidopsis thalian	0.901	0.881	0.292	1.9e-53
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.441	0.297	0.271	9.8e-14
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.446	0.328	0.269	1.4e-13
TAIR|locus:2135788	402	AT4G12710 [Arabidopsis thalian	0.496	0.691	0.257	6.2e-13
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.576	0.558	0.230	3.1e-12
TAIR|locus:2103351	928	ARABIDILLO-2 "AT3G60350" [Arab	0.642	0.387	0.253	6.8e-12

TAIR|locus:2043709 AT2G45720 "AT2G45720" [Arabidopsis thaliana (taxid:3702)]

 Score = 1861 (660.2 bits), Expect = 4.6e-192, P = 4.6e-192
 Identities = 371/542 (68%), Positives = 446/542 (82%)

Query:     1 MVEDG-GNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLS 59
             MVE+  GN  L + Q+ ++ LL AQELVP+A+ KAR +KGF  RW++IIS+LE+IP+ LS
Sbjct:     1 MVEEKTGNVTLLD-QTVEDLLLQAQELVPIALSKARTVKGFSSRWRVIISRLEKIPTCLS 59

Query:    60 DLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLN 119
             DLSSHPCFSK+ LC+EQLQAV +TLKE IELA +CV EK EGKL+MQSDLD+LS K+DL+
Sbjct:    60 DLSSHPCFSKHTLCKEQLQAVLETLKETIELANVCVSEKQEGKLKMQSDLDSLSAKIDLS 119

Query:   120 LHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLV 179
             L DCGLL+KTGVLGE T PLS   S+ D E  +    RELLARLQIGHLE+K KAL+ LV
Sbjct:   120 LKDCGLLMKTGVLGEVTKPLS--SSTQDLETFS---VRELLARLQIGHLESKRKALEQLV 174

Query:   180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239
             E MKEDEK V+  +GR+N+A+LVQLLTATSP +RE  VTVICSLAESG CENWL+SE  L
Sbjct:   175 EVMKEDEKAVITALGRTNVASLVQLLTATSPSVRENAVTVICSLAESGGCENWLISENAL 234

Query:   240 PPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299
             P LIRL+ESGS V KEKA ISLQR+S+S+E +R+IVGHGGV PLIEIC+TGDSVSQ+A+A
Sbjct:   235 PSLIRLLESGSIVAKEKAVISLQRMSISSETSRSIVGHGGVGPLIEICKTGDSVSQSASA 294

Query:   300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359
             CTLKNISAVPEVRQ LAEEGIV VMI +L+CGILLGSKEYAAECLQNLT+SNE LRRSV+
Sbjct:   295 CTLKNISAVPEVRQNLAEEGIVKVMINILNCGILLGSKEYAAECLQNLTSSNETLRRSVI 354

Query:   360 SEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKXXXXXXXXX 419
             SE GI++LLAYLDGPLPQES V A+RNLVGSVS E    +   P LVHVLK         
Sbjct:   355 SENGIQTLLAYLDGPLPQESGVAAIRNLVGSVSVETYFKI--IPSLVHVLKSGSIGAQQA 412

Query:   420 XXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK 479
                  CR+ TS E K+++GE+GC PLLI++LEAK +  REVAAQAI+SLVT+P+NCREVK
Sbjct:   413 AASTICRIATSNETKRMIGESGCIPLLIRMLEAKASGAREVAAQAIASLVTVPRNCREVK 472

Query:   480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIP 539
             RD+KSV +LV LL+PSP N+AKKYAV+ LA+L  S+KCKKLM+S+GA+GYLKKLSE+++P
Sbjct:   473 RDEKSVTSLVMLLEPSPGNSAKKYAVSGLAALCSSRKCKKLMVSHGAVGYLKKLSELEVP 532

Query:   540 GA 541
             G+
Sbjct:   533 GS 534

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2198235 AT1G01830 "AT1G01830" [Arabidopsis thaliana (taxid:3702)]

 Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
 Identities = 342/537 (63%), Positives = 416/537 (77%)

Query:     7 NGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPC 66
             N  + + QS +EWL     L+P  + KA+ +K F GRWK IISK+EQIP+ LSDLSSHPC
Sbjct:    23 NQMIMDKQSVEEWLSRVNSLIPSVLSKAKTVKKFTGRWKTIISKIEQIPACLSDLSSHPC 82

Query:    67 FSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLL 126
             FSKN LC EQLQ+V+KTL E IELAE C  +KYEGKLRMQSDLD+LSGKLDLNL DCG+L
Sbjct:    83 FSKNKLCNEQLQSVAKTLSEVIELAEQCSTDKYEGKLRMQSDLDSLSGKLDLNLRDCGVL 142

Query:   127 IKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE 186
             IKTGVLGEATLPL ++ SS   E     + +ELLARLQIGHLE+KH AL+SL+ AM+EDE
Sbjct:   143 IKTGVLGEATLPLYISSSS---ETPKISSLKELLARLQIGHLESKHNALESLLGAMQEDE 199

Query:   187 KNVLA-VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRL 245
             K VL  ++GR+N+AALVQLLTATS RIREK V +I  LAESG C+ WL+SEGVLPPL+RL
Sbjct:   200 KMVLMPLIGRANVAALVQLLTATSTRIREKAVNLISVLAESGHCDEWLISEGVLPPLVRL 259

Query:   246 VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305
             +ESGS   KEKA I++QRLSM+ E AR I GHGG+ PLI++C+TGDSVSQAA+A  LKN+
Sbjct:   260 IESGSLETKEKAAIAIQRLSMTEENAREIAGHGGITPLIDLCKTGDSVSQAASAAALKNM 319

Query:   306 SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365
             SAV E+RQ+LAEEGI+ V I LL+ GILLGS+E+ AECLQNLTA+++ LR ++VSEGG+ 
Sbjct:   320 SAVSELRQLLAEEGIIRVSIDLLNHGILLGSREHMAECLQNLTAASDALREAIVSEGGVP 379

Query:   366 SLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXC 425
             SLLAYLDGPLPQ+ AV ALRNL+ SV+ E+ ++L   PRL HVLK              C
Sbjct:   380 SLLAYLDGPLPQQPAVTALRNLIPSVNPEIWVALNLLPRLRHVLKSGSLGAQQAAASAIC 439

Query:   426 RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
             R   S E K+LVGE+GC P ++KLLE+K N  RE AAQAI+ LV   +  RE+K+D KSV
Sbjct:   440 RFACSPETKRLVGESGCIPEIVKLLESKSNGCREAAAQAIAGLVAEGRIRRELKKDGKSV 499

Query:   486 -PNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGA 541
               NLV LLD +P NTAKKYAVA L  +S S+K KK+M+SYGAIGYLKKLSEM++ GA
Sbjct:   500 LTNLVMLLDSNPGNTAKKYAVAGLLGMSGSEKSKKMMVSYGAIGYLKKLSEMEVMGA 556

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2157358 AT5G50900 [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 199/536 (37%), Positives = 316/536 (58%)

Query:    13 IQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNAL 72
             + ++D+      E++   ++    +  F  +W  I +KL  + + LSD S     S N L
Sbjct:     3 VPNSDDGDRSLTEVITSLIDSIPNLLSFKCKWSSIRAKLADLKTQLSDFSDFAGSSSNKL 62

Query:    73 CREQLQAVSKTLKEAIELAELCV-KEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGV 131
               + L +V +TL +A+ +A  C   +  EGKL+ QS++D++  +LD ++ D  +LIK+G+
Sbjct:    63 AVDLLVSVRETLNDAVAVAARCEGPDLAEGKLKTQSEVDSVMARLDRHVKDAEVLIKSGL 122

Query:   132 LGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLA 191
             L +  + +S    S+  EA      R L+ RLQIG +E+K+ A+DSL+E ++ED+KNV+ 
Sbjct:   123 LIDNGIVVSGFSISSKKEAVRL-EARNLVIRLQIGGVESKNSAIDSLIELLQEDDKNVMI 181

Query:   192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV--LPPLIRLVESG 249
              + +  +  LV+LL + S  ++EKTV VI  ++   S ++ L++EG+  L  L+R++ESG
Sbjct:   182 CVAQGVVPVLVRLLDSCSLVMKEKTVAVISRISMVESSKHVLIAEGLSLLNHLLRVLESG 241

Query:   250 STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309
             S   KEKA ++LQ LS+S E ARAI   GG+  L+EICQ G   SQA AA  L+N++   
Sbjct:   242 SGFAKEKACVALQALSLSKENARAIGCRGGISSLLEICQGGSPGSQAFAAGVLRNLALFG 301

Query:   310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA 369
             E ++   EE  + V+I ++  G  L ++E A  CL NLT+ +E+L  SVV EGGI+ L +
Sbjct:   302 ETKENFVEENAIFVLISMVSSGTSL-AQENAVGCLANLTSGDEDLMISVVREGGIQCLKS 360

Query:   370 YLDGPLPQESA-VGA--LRNL-VGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXC 425
             + D     +S  VG   L+NL +  + +EV+IS GF PRLV VL                
Sbjct:   361 FWDSVSSVKSLEVGVVLLKNLALCPIVREVVISEGFIPRLVPVLSCGVLGVRIAAAEAVS 420

Query:   426 RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
              +  S++ +K +GE+GC   LI +L+ K    +E A++A+S+L+    N +  K+ DK V
Sbjct:   421 SLGFSSKSRKEMGESGCIVPLIDMLDGKAIEEKEAASKALSTLLVCTSNRKIFKKSDKGV 480

Query:   486 PNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGA 541
              +LVQLLDP  +   K+Y V+ L  L  SKKC+K +++ GA  +L+KL +MD  GA
Sbjct:   481 VSLVQLLDPKIKKLDKRYTVSALELLVTSKKCRKQVVAAGACLHLQKLVDMDTEGA 536

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2056529 AT2G05810 "AT2G05810" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 176/519 (33%), Positives = 274/519 (52%)

Query:    37 IKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVK 96
             ++ F GRW+++ SKL  + S LS LS  P +S+N L    L ++   L+    L++ C  
Sbjct:    41 VRSFIGRWQILRSKLFTLNSSLSSLSESPHWSQNPLLHTLLPSLLSNLQRLSSLSDQCSS 100

Query:    97 EKYEG-KLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEAT-LPLSVAGSSTDAEATTHG 154
               + G KL MQSDLD  S  L  ++ D  LL+++GVL +   + LS+   ++D +     
Sbjct:   101 ASFSGGKLLMQSDLDIASSSLSTHISDLDLLLRSGVLHQQNAIVLSLPPPTSDKDDIAFF 160

Query:   155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIR 213
               R+L  RLQIG  E K K+L+SL++ + ++EK+   +    N+  LV LL     P IR
Sbjct:   161 -IRDLFTRLQIGGAEFKKKSLESLLQLLTDNEKSARIIAKEGNVGYLVTLLDLHHHPLIR 219

Query:   214 EKTVTVICSLAESGSCENWLVSE-GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR 272
             E  +  +  L  S +     V E G L PL+RL+E+GS+  K +A I+++ ++     A 
Sbjct:   220 EHALAAVSLLTSSSADSRKTVFEQGGLGPLLRLLETGSSPFKTRAAIAIEAITADPATAW 279

Query:   273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI 332
             AI  +GGV  LIE C++G    Q   A  + NI+AV E+R  LAEEG + V+I+LL  G 
Sbjct:   280 AISAYGGVTVLIEACRSGSKQVQEHIAGAISNIAAVEEIRTTLAEEGAIPVLIQLLISGS 339

Query:   333 LLGSKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLD---GPLPQESAVGALRNL- 387
                 +E  A  +  +++S E  R  +V E GG++ L+  +     P   E  + AL  + 
Sbjct:   340 S-SVQEKTANFISLISSSGEYYRDLIVRERGGLQILIHLVQESSNPDTIEHCLLALSQIS 398

Query:   388 -VGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLL 446
              + +VS+ +  S  F  RL  ++K                +  S   K+ V  A C   L
Sbjct:   399 AMETVSRVLSSSTRFIIRLGELIKHGNVILQQISTSLLSNLTISDGNKRAV--ADCLSSL 456

Query:   447 IKLLEA-KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ--NTAKKY 503
             I+L+E+ KP  ++E A +A  SL+T+  N +E+ RD+KSV  LVQ+LDP  +  N  +  
Sbjct:   457 IRLMESPKPAGLQEAATEAAKSLLTVRSNRKELMRDEKSVIRLVQMLDPRNERMNNKELP 516

Query:   504 AVACLASLSP-SKKCKKLMISYGAIGYLKKLSEMDIPGA 541
              +   A LS  S   +  +I  GA  YL+ L EM++PGA
Sbjct:   517 VMVVTAILSGGSYAARTKLIGLGADRYLQSLEEMEVPGA 555

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2197654 AT1G61350 [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 157/536 (29%), Positives = 281/536 (52%)

Query:    23 AQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSK 82
             A E +   +  +  IK F  +W++I +KL+++ S L  L +       +L    + A+  
Sbjct:    17 AIEAISSLISLSHSIKSFNIKWQLIRTKLQELYSGLDSLRNLNSGFDPSLS-SLISAILI 75

Query:    83 TLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVL--GEATLPLS 140
             +LK+  +LA  CV   + GKL MQSDLD ++GK D +  +   +   G+L  G A + L 
Sbjct:    76 SLKDTYDLATRCVNVSFSGKLLMQSDLDVMAGKFDGHTRNLSRIYSAGILSHGFAIVVLK 135

Query:   141 VAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAA 200
               G++   +   +   R+LL R++IG LE K +AL  L EAM+ED++ V  ++  S++  
Sbjct:   136 PNGNACKDDMRFY--IRDLLTRMKIGDLEMKKQALVKLNEAMEEDDRYVKILIEISDMVN 193

Query:   201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATIS 260
             ++     +   I+E++   +  ++  GS  + L+  GV+ PL+R++E+G+ VG+E +   
Sbjct:   194 VLVGFLDSEIGIQEESAKAVFFISGFGSYRDVLIRSGVIGPLVRVLENGNGVGREASARC 253

Query:   261 LQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQA-AAAC-TLKNISAVPEVRQ-MLAE 317
             L +L+ ++E A ++  HGGV  L++IC   D   +    +C  L+N+  V E+++ M+ E
Sbjct:   254 LMKLTENSENAWSVSAHGGVSALLKICSCSDFGGELIGTSCGVLRNLVGVEEIKRFMIEE 313

Query:   318 EGIVSVMIKLLDCGILLGSKEY-----AAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372
             +  V+  IKL+      GSKE      + + L ++   +E  R  +V EGGI+ L++ L 
Sbjct:   314 DHTVATFIKLI------GSKEEIVQVNSIDLLLSMCCKDEQTRDILVREGGIQELVSVLS 367

Query:   373 GP------LPQESAVGALRNLV-GSVS-QEVLISLGFFPRLVHVLKXXXXXXXXXXXXXX 424
              P        +E A+ A+ NL  GS      L+   F   L+++L+              
Sbjct:   368 DPNSLSSSKSKEIALRAIDNLCFGSAGCLNALMGCKFLDHLLNLLRNGEISVQESALKVT 427

Query:   425 CRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDK 483
              R+C+   E+K+++GEAG  P L+K L+AK   VRE+A+ A+  L+++P+N ++  +DD 
Sbjct:   428 SRLCSLQEEVKRIMGEAGFMPELVKFLDAKSIDVREMASVALYCLISVPRNRKKFAQDDF 487

Query:   484 SVPNLVQLLDPSPQNTAKKYA--VACLASLSPS-KKCKKLMISYGAIGYLKKLSEM 536
             ++  ++QLLD    +     +     L S+  S   C        + GYLK + ++
Sbjct:   488 NISYILQLLDHEDGSNVSSDSGNTKFLISILMSLTSCNSARRKIASSGYLKSIEKL 543

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 9.8e-14, P = 9.8e-14
 Identities = 69/254 (27%), Positives = 121/254 (47%)

Query:   157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKT 216
             ++L+  L+   L+ + +A   L    K +  N + +     I  LV+LL +T    +E  
Sbjct:   547 KKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENA 606

Query:   217 VTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG 276
             VT + +L+ + + +  +   G + PLI ++E+GS+  KE +  +L  LS+  E    I  
Sbjct:   607 VTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQ 666

Query:   277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGS 336
              G + PL+++   G    +  AA  L N+S   E + M+ + G V  +I L+D     G 
Sbjct:   667 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAA--GM 724

Query:   337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-GPLP-QESAVGALRNLVGSVSQ- 393
              + A   L NL    E  R ++  EGGI  L+  ++ G    +E+A  AL  L  +  + 
Sbjct:   725 VDKAVAVLANLATIPEG-RNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRF 783

Query:   394 -EVLISLGFFPRLV 406
               +++  G  P LV
Sbjct:   784 CNMVLQEGAVPPLV 797

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 72/267 (26%), Positives = 125/267 (46%)

Query:   206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265
             TA +  IR  T+  I +    G C       G + PL+ L+ S   + +E A  +L  LS
Sbjct:   490 TAAAAEIRHLTINSIENRVHIGRC-------GAITPLLSLLYSEEKLTQEHAVTALLNLS 542

Query:   266 MSAEMARA-IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGI-VSV 323
             +S E+ +A IV  G + PL+ +  TG+  ++  +A +L ++S +   R+ + +    +  
Sbjct:   543 IS-ELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQA 601

Query:   324 MIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ-ESAVG 382
             ++ LL  G   G K+ AA  L NL+ +++N  R +V    ++ L+  LD  L   + AV 
Sbjct:   602 LVNLLGKGTFRGKKD-AASALFNLSITHDNKAR-IVQAKAVKYLVELLDPDLEMVDKAVA 659

Query:   383 ALRNL--VGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXCRVC-TSAEMKKLVGE 439
              L NL  VG   ++ ++  G  P LV  +                ++C  S +   LV +
Sbjct:   660 LLANLSAVGE-GRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQ 718

Query:   440 AGCTPLLIKLLEAKPNSVREVAAQAIS 466
              G  P L+ L ++     +E A Q +S
Sbjct:   719 EGAIPPLVALSQSGTQRAKEKAQQLLS 745

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2135788 AT4G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 75/291 (25%), Positives = 137/291 (47%)

Query:   112 LSGKLDLNLH-DCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEA 170
             LS KL   LH D    I+        L  S   SS  ++    G    L+  L   +++A
Sbjct:    50 LSKKL---LHGDLDFRIEAAKEIRKLLRKSPVKSSARSKLADAGVIPPLVPMLFSSNVDA 106

Query:   171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE 230
             +H +L +L+     +E+N + ++    +  L+Q+L   +  +RE     I +L+ + + +
Sbjct:   107 RHASLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPANK 166

Query:   231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI---C 287
               ++S GV P LI+++ SG+  GK  A  +L  LS   E +  I+    V PLI +   C
Sbjct:   167 AMIISSGVPPLLIQMLSSGTVQGKVDAVTALHNLSACKEYSAPILDAKAVYPLIHLLKEC 226

Query:   288 QTGDSVSQAAAACTLKNISAVPEVRQMLA--EEGIVSVMIKLLDCGILLGSKEYAAECLQ 345
             +     ++ A A     +S   + R  +   E+GI++ +++ ++ G  L S E+A   L 
Sbjct:   227 KKHSKFAEKATALVEMILSHSEDGRNAITSCEDGILT-LVETVEDGSPL-SIEHAVGALL 284

Query:   346 NLTASN-ENLRRSVVSEGGIRSLLAY-LDGPLPQESAVGALRNLVGSVSQE 394
             +L  S+ +  R+ ++ EG I  LL+  +DG          L +L+    +E
Sbjct:   285 SLCRSDRDKYRKLILKEGAIPGLLSSTVDGTSKSRDRARVLLDLLRETPRE 335

GO:0005737 "cytoplasm" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 196 (74.1 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 79/343 (23%), Positives = 154/343 (44%)

Query:   167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-E 225
             H+  +  A  +L+  M   E+N   ++    +  LV LL++T P ++    T + ++A +
Sbjct:   180 HIRVQRNATGALLN-MTHSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVD 238

Query:   226 SGSCENWLVSEG-VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI 284
               + +    +E  ++  L+ L++S S+  K +AT++L+ L+        IV  GG+  L+
Sbjct:   239 EANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLV 298

Query:   285 EICQTGDSVSQ--AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAE 342
             ++ Q+ DS+    A+ AC ++NIS  P    ++ + G +  +++LLD       + +A  
Sbjct:   299 KLIQS-DSIPLVLASVAC-IRNISIHPLNEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVS 356

Query:   343 CLQNLTASNENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGALRNLVG--SVSQEVLIS 398
              L+NL AS+E  R+     G +     LA LD P+  +S + A   ++    VS+  L+ 
Sbjct:   357 TLRNLAASSEKNRKEFFESGAVEKCKELA-LDSPVSVQSEISACFAILALADVSKLDLLE 415

Query:   399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEA------GCTPLLIKLLEA 452
                   L+ +                  +C+       + EA      G    LI+ L++
Sbjct:   416 ANILDALIPMTFSQNQEVSGNAAAALANLCSRVNNYTKIIEAWDRPNEGIRGFLIRFLKS 475

Query:   453 KPNSVREVAAQAISSLVTLPQNCRE--VKRDDKSVPNLVQLLD 493
                +   +A   I  L+    +  E  VK DD  +  + ++ D
Sbjct:   476 DYATFEHIALWTILQLLESHNDKVEDLVKNDDDIINGVRKMAD 518

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
 Identities = 98/386 (25%), Positives = 165/386 (42%)

Query:   159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVL-------AVMGRSNIAALVQLLTATSPR 211
             LL+ +Q    + + +A   L   +  D++N         AVM    I  L++L  +    
Sbjct:   385 LLSLMQSAQEDVQERAATGLATFIVVDDENASIDCGRAEAVMRDGGIRLLLELAKSWREG 444

Query:   212 IREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA 271
             ++ +    I +L+ +      +  EG +  L  L +S + +  E+A   L  LS+  E  
Sbjct:   445 LQSEAAKAIANLSVNAKVAKAVAEEGGISVLADLAKSMNRLVAEEAAGGLWNLSVGEEHK 504

Query:   272 RAIVGHGGVRPLIEIC---QTG-DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL 327
              AI   GGV  L+++      G D V + AA   L N++A  +    +A  G V  ++ L
Sbjct:   505 NAIAQAGGVNALVDLIFRWPHGCDGVLERAAGA-LANLAADDKCSMEVARAGGVHALVML 563

Query:   328 L-DCGILLGSKEYAAECLQNLTASNE-NLRRSVVSE--GGIRSLLAYLDGP---LPQESA 380
               +C    G++E AA  L NL A  + N   + V +  G + +L+     P   + QE+A
Sbjct:   564 ARNCKYE-GAQEQAARALANLAAHGDSNGNNAAVGQEAGALEALVQLTQSPHEGVKQEAA 622

Query:   381 VGALRNLV-GSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXCRV--CTSAEMKKL- 436
              GAL NL     ++E + + G    LV + K                +   + +E   + 
Sbjct:   623 -GALWNLAFDDKNRESIAAFGGVEALVALAKSSSNASTGLQERVAGALWGLSVSEANSIA 681

Query:   437 VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSP 496
             +G  G  P LI L+ ++   V E AA A+ +L   P N   +  ++  V  LVQL   S 
Sbjct:   682 IGHEGGIPPLIALVRSEAEDVHETAAGALWNLSFNPGNALRIV-EEGGVVALVQLCSSSV 740

Query:   497 QNTAKKYAVACLASLSPSKKCKKLMI 522
                A+  A   LA +   +  +  MI
Sbjct:   741 SKMARFMAALALAYMFDGRMDEYAMI 766

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048527 "lateral root development" evidence=IGI;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	560
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-11
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-11
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	7e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.002
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 358 VVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAGS 413
           V+  GG+ +L++ L       Q  A  AL NL    +   + ++  G  P LV +LK+  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 414 LGAQQAAASALCRVCTSAEMKKL-VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
               +AA  AL  +    E  KL V EAG  P L+ LL++    +++ A  A+S+L +
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 86/336 (25%), Positives = 155/336 (46%), Gaps = 34/336 (10%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L++ L+ G L AK  A   L    KE++  V  ++G   I  L+ LL + S   ++    
Sbjct: 63  LVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLG-GCIPPLLSLLKSGSAEAQKAAAE 121

Query: 219 VICSLAESGSCEN----WLVSEGVLPPLIRLVESGSTVGKE---KATISLQRLSMSAE-M 270
            I +++  G  ++       +EGV+P L   ++ G+   K      T +L+ L  S +  
Sbjct: 122 AIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF 181

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKN-ISAVPEVRQMLAEEGIVSVMIKLLD 329
             A +  GGV  L+++  +G+S +QA AA  L   + A       + + G V  ++KLL 
Sbjct: 182 WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLG 241

Query: 330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP-----------QE 378
            G  +  +  AA  L+ L++ ++  ++++   GGI +L+     P             QE
Sbjct: 242 QGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQE 301

Query: 379 SAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQ-----AAASALCRVCTSAEM 433
           +A+GAL N+ G +S  +++ LG       + ++    A       A A AL    +SAE 
Sbjct: 302 NAMGALANICGGMSA-LILYLG------ELSESPRSPAPIADTLGALAYALMVFDSSAES 354

Query: 434 KKLVGEAGCTPLLIKLLEAK-PNSVREVAAQAISSL 468
            +         +L+KLL+ +    V+E   +A++SL
Sbjct: 355 TRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL 390

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEA 452
           E +I  G  P LV +L +     Q+ AA AL  +   + +  + V EAG  P L++LL++
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
           +   V + A  A+ +L   P++ + +  +   VP LV LLD S     +K A   L++L+
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD-SSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTG 290
            ++  G LP L+ L+ S     + +A  +L  LS  + +  +A+V  GG+  L+++ ++ 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 291 DSVSQAAAACTLKNISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
           D     AA   L+N++A PE  + ++ E G V  ++ LLD       ++ A   L NL +
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 34/282 (12%)

Query: 234 VSEGVLPPLIRLVE-----SGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRP-LIEI 286
             +G L  + + +E     S S   KE  T  L  L+ + E AR  +G H    P L+ +
Sbjct: 7   DPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSL 66

Query: 287 CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN 346
            ++G   ++  AA  L  +    ++R  +   G +  ++ LL  G     K  AAE +  
Sbjct: 67  LRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKA-AAEAIYA 125

Query: 347 LT---ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAV-----GALRNLVGSVSQEVLIS 398
           ++    S+    +   +EG + SL   L     Q+  V     GALRNL GS       +
Sbjct: 126 VSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS-------T 178

Query: 399 LGFFPR---------LVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLLIK 448
            GF+           LV +L +G+  AQ  AAS L R+  + E     V +AG    L+K
Sbjct: 179 DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLK 238

Query: 449 LLEAKPN-SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV 489
           LL      SVR  AA A+ +L +  +  ++   D   +P L+
Sbjct: 239 LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 87/345 (25%), Positives = 151/345 (43%), Gaps = 18/345 (5%)

Query: 201 LVQLLTATSPR-IREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATI 259
           LV+LL     + ++E+ +  + SL  +      L        L+ L+   +   +E+   
Sbjct: 367 LVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426

Query: 260 SLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAE 317
           +L  L      +  A+ G  GV+ LI +        Q  A   L  ++  V E +  +  
Sbjct: 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486

Query: 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD--GPL 375
            G +  +++LL+ G    +KE +A  L NL   +E++R  V S G + +LL  L   GP 
Sbjct: 487 AGGIPPLVQLLETGSQ-KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPK 545

Query: 376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435
            QE A   L  LV + +    IS     +L  +L      ++      L  V + A ++ 
Sbjct: 546 GQEIAAKTLTKLVRT-ADAATIS-----QLTALLLGDLPESKVHVLDVLGHVLSVASLED 599

Query: 436 LV--GEAGCTPL--LIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQL 491
           LV  G A    L  LI+LL +     +E AA  ++ + +  Q+  E    D+ +   ++L
Sbjct: 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659

Query: 492 LDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEM 536
           L  + +  A + A   LA+LS S K  + + SY A   +K L ++
Sbjct: 660 LTNNTEAVATQSA-RALAALSRSIKENRKV-SYAAEDAIKPLIKL 702

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372
           + + + G +  ++ LL        +  AA  L NL+A N +  ++VV  GG+ +L+  L 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 373 GPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428
                  ++A+ ALRNL       + +++  G  P+LV++L + +   Q+ A  AL  + 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 429 T 429
           +
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 190 LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSE-GVLPPLIRLVES 248
            AV+    + ALV LL+++   ++ +    + +L+   +     V E G LP L++L++S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 249 GSTVGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
                 + A  +L+ L+   E  + IV   GGV  L+ +  + +   Q  A   L N+++
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 191 AVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENWLVSEGVLPPLIRLVESG 249
           A+     I  LVQLL   S + +E + TV+ +L   S      + S G +P L+ L+++G
Sbjct: 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG 542

Query: 250 STVGKEKATISLQRLSMSAEMA---------------------------------RAIVG 276
              G+E A  +L +L  +A+ A                                   +V 
Sbjct: 543 GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602

Query: 277 HG-----GVRPLIEICQTGDSVSQAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDC 330
            G      +R LI++  +    +Q  AA  L +I S+  ++ + LA + I++  IKLL  
Sbjct: 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN 662

Query: 331 GILLGSKEYAAECLQNLTAS-NENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGALRNL 387
                + + +A  L  L+ S  EN + S  +E  I+ L  LA        E AV AL NL
Sbjct: 663 NTEAVATQ-SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721

Query: 388 V--GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
           +    V+ E L      P L  VL+ G+L  ++ AA AL +
Sbjct: 722 LSDPEVAAEALAEDIILP-LTRVLREGTLEGKRNAARALAQ 761

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKE 255
           +  L+QLL+++    +EK  +V+  +  S    CE+    E ++ P I+L+ + +     
Sbjct: 611 LRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE-IINPCIKLLTNNTEAVAT 669

Query: 256 KATISLQRLSMSAEMAR--AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313
           ++  +L  LS S +  R  +      ++PLI++ ++        A C L N+ + PEV  
Sbjct: 670 QSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA 729

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS---NENLRRSVVSEGGIRSLLAY 370
               E I+  + ++L  G L G K  AA  L  L      ++ L+ SV   G + +L+  
Sbjct: 730 EALAEDIILPLTRVLREGTLEG-KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL 788

Query: 371 LDG 373
           L+ 
Sbjct: 789 LNS 791

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
           S E K+ V EAG  P L++LL +    V+E AA A+S+L  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
           S E  +A++  G V PL+++  + D   Q  AA  L N++A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	560
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.84
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.82
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.72
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.69
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.68
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.58
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.58
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.57
PRK09687	280	putative lyase; Provisional	99.53
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.53
PRK09687	280	putative lyase; Provisional	99.47
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.43
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.43
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.4
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.31
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.31
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.3
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.28
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.24
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.21
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.19
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.13
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.12
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.1
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.09
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.08
KOG4413	524	consensus 26S proteasome regulatory complex, subun	99.07
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.04
PTZ00429	746	beta-adaptin; Provisional	99.03
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.02
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.99
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.98
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.97
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.95
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.92
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.91
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.9
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.9
PTZ00429	746	beta-adaptin; Provisional	98.87
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.85
PF05536	543	Neurochondrin: Neurochondrin	98.79
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.72
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.66
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.65
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.58
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.55
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.43
TIGR02270	410	conserved hypothetical protein. Members are found	98.39
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.36
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.32
TIGR02270	410	conserved hypothetical protein. Members are found	98.31
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.28
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.27
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.25
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.24
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.24
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.14
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.12
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.1
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.1
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.08
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.08
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.07
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.04
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.03
COG5369	743	Uncharacterized conserved protein [Function unknow	98.03
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.96
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.96
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.95
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.94
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.88
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.88
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.87
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.87
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.86
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.86
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.84
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.83
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.81
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.76
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.74
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.73
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.71
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.7
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.69
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.69
PF05536	543	Neurochondrin: Neurochondrin	97.67
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.67
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.57
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.54
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.44
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.34
COG5369	743	Uncharacterized conserved protein [Function unknow	97.33
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.32
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.23
KOG3036	293	consensus Protein involved in cell differentiation	97.21
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.14
KOG3036	293	consensus Protein involved in cell differentiation	97.13
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.11
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.09
KOG0567	289	consensus HEAT repeat-containing protein [General	97.08
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.05
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.99
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.97
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.94
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.94
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.92
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.86
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.82
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.79
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.78
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.78
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.71
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.69
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.64
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.43
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.4
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.4
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.35
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.33
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.3
KOG0567	289	consensus HEAT repeat-containing protein [General	96.29
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.24
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.24
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.21
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.17
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.16
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.03
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.01
PF05004	309	IFRD: Interferon-related developmental regulator (	96.0
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.0
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.98
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.97
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	95.83
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.82
PF05004	309	IFRD: Interferon-related developmental regulator (	95.73
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.72
PRK14707	2710	hypothetical protein; Provisional	95.7
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.7
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.57
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.52
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.47
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.43
KOG2062	929	consensus 26S proteasome regulatory complex, subun	95.27
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.24
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.23
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.22
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.13
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	95.1
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	94.97
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.85
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.84
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	94.84
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.83
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.71
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.54
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.5
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.35
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.1
KOG4653	982	consensus Uncharacterized conserved protein [Funct	94.07
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.02
PRK14707	2710	hypothetical protein; Provisional	93.99
KOG2956	516	consensus CLIP-associating protein [General functi	93.97
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.96
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.8
KOG2025	892	consensus Chromosome condensation complex Condensi	93.7
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.67
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.67
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.31
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.3
KOG2032	533	consensus Uncharacterized conserved protein [Funct	93.19
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.13
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.91
KOG2062	929	consensus 26S proteasome regulatory complex, subun	92.89
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.78
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	92.49
KOG2956	516	consensus CLIP-associating protein [General functi	92.47
KOG4653	982	consensus Uncharacterized conserved protein [Funct	92.43
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.21
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	92.14
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.14
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	91.96
KOG0414	1251	consensus Chromosome condensation complex Condensi	91.87
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	91.65
KOG0414	1251	consensus Chromosome condensation complex Condensi	91.45
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	91.31
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.31
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	91.25
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	90.4
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	89.73
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	89.64
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	89.63
KOG2933	334	consensus Uncharacterized conserved protein [Funct	89.58
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	89.37
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	88.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.2
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.0
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	87.93
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	87.75
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	87.69
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.41
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	87.33
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	87.19
COG5656	970	SXM1 Importin, protein involved in nuclear import	86.59
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	86.53
KOG2032	533	consensus Uncharacterized conserved protein [Funct	86.38
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	85.57
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	85.06
KOG1243	690	consensus Protein kinase [General function predict	84.88
KOG2137	700	consensus Protein kinase [Signal transduction mech	84.87
KOG2025	892	consensus Chromosome condensation complex Condensi	84.21
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.1
COG5116	926	RPN2 26S proteasome regulatory complex component [	83.68
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	82.85
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	82.76
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	82.39
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.39
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	82.01
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	81.88
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	81.54
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	81.39
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	81.25
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	81.25
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	80.97
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	80.92
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	80.75
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	80.42
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	80.36

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1e-33  Score=325.49  Aligned_cols=387  Identities=25%  Similarity=0.308  Sum_probs=327.9

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--c-hH-
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--S-CE-  230 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~-~~-  230 (560)
                      .|+.|+..|.+++...+..|+..|.+++.+ ++++..++..|.+++|+.+|++++++.++.|+.+|..|+.++  + ++ 
T Consensus        59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~  137 (2102)
T PLN03200         59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS  137 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhh
Confidence            489999999999999999999999999874 778888888999999999999999999999999999999875  3 44 


Q ss_pred             HHHHhCCCHHHHHHhhhcCC---HHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585          231 NWLVSEGVLPPLIRLVESGS---TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (560)
                      ..++..|++|+|+.++++++   ..+++.++.+|.+|+.+.++.+ .+++.|+++.|+.+++++++..+..|+++|.+++
T Consensus       138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La  217 (2102)
T PLN03200        138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM  217 (2102)
T ss_pred             hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            45668999999999999873   3467788999999999988775 5689999999999999999999999999998888


Q ss_pred             CC-chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc----------
Q 008585          307 AV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL----------  375 (560)
Q Consensus       307 ~~-~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~----------  375 (560)
                      .+ ++.+..+++.|+||.|++++.++++..+|++|+++|+||+.+++++++.+++.|+++.|++++.++.          
T Consensus       218 ss~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~  297 (2102)
T PLN03200        218 MAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQ  297 (2102)
T ss_pred             cCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccch
Confidence            64 6799999999999999999987654479999999999999999999999999999999999997422          


Q ss_pred             -cHHHHHHHHHHhhcc--c-----------cH--H---------------------------------------------
Q 008585          376 -PQESAVGALRNLVGS--V-----------SQ--E---------------------------------------------  394 (560)
Q Consensus       376 -~~~~a~~~L~nla~~--~-----------~~--~---------------------------------------------  394 (560)
                       .+++|+|+|+|+|..  .           .+  .                                             
T Consensus       298 ~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~  377 (2102)
T PLN03200        298 ALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTK  377 (2102)
T ss_pred             HHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCc
Confidence             479999999998871  1           00  0                                             


Q ss_pred             ---------------------HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHcc
Q 008585          395 ---------------------VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA  452 (560)
Q Consensus       395 ---------------------~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s  452 (560)
                                           .+.+.++++.|+.+|...+.++|..++++|++++.+ .+.++.+.+.|++|.|+++|.+
T Consensus       378 ~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s  457 (2102)
T PLN03200        378 LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL  457 (2102)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC
Confidence                                 001123344455555556678999999999999955 8899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChh-hHHHHHHcChhHHHH
Q 008585          453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKK-CKKLMISYGAIGYLK  531 (560)
Q Consensus       453 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~-~r~~i~~~g~i~~L~  531 (560)
                      .+..+|..|+++|.+|+...+..+..+.+.|+++.|+++|.+++ ..+++.++.++.|++.++. .+..+.+.|+++.|.
T Consensus       458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~-~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV  536 (2102)
T PLN03200        458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS-QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALL  536 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHH
Confidence            99999999999999999766655556668999999999999764 4688899999999998765 555566889999999


Q ss_pred             HhhccCchhHHH
Q 008585          532 KLSEMDIPGARK  543 (560)
Q Consensus       532 ~L~~~~~~~akk  543 (560)
                      ++++.+++..++
T Consensus       537 ~LL~sgd~~~q~  548 (2102)
T PLN03200        537 WLLKNGGPKGQE  548 (2102)
T ss_pred             HHHhCCCHHHHH
Confidence            999888776554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=323.94  Aligned_cols=391  Identities=24%  Similarity=0.301  Sum_probs=335.0

Q ss_pred             hhchHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHhh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585          152 THGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (560)
                      ....+..++..|.++  +++.+..|+..|..+++.+++++..+.+ .|.+|.|+.+|.++++.+++.|+.+|.+++.+++
T Consensus        11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~   90 (2102)
T PLN03200         11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED   90 (2102)
T ss_pred             hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence            355688999999977  7899999999999999999999998885 6889999999999999999999999999999989


Q ss_pred             hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh--h-hH-HHHHhCCChHHHHHHhccCC---hHHHHHHHHH
Q 008585          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--E-MA-RAIVGHGGVRPLIEICQTGD---SVSQAAAACT  301 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~-~~-~~l~~~g~i~~Lv~ll~~~~---~~~~~~a~~a  301 (560)
                      ++..++..|++++|+.+|++++++.++.|+.+|.+|+.+.  + ++ ..++..|++|.|+.++++++   ..++..++.+
T Consensus        91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A  170 (2102)
T PLN03200         91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA  170 (2102)
T ss_pred             HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999864  3 34 34567999999999999863   3467788999


Q ss_pred             HHHhcCCchhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccH
Q 008585          302 LKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQ  377 (560)
Q Consensus       302 L~nLa~~~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~  377 (560)
                      |.||+.+++++ +.+++.|+++.++.++.++++ ..+++|+.+|.+++.+.+..++.+++.|+++.|++++.+   +.++
T Consensus       171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~-~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VR  249 (2102)
T PLN03200        171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNS-DAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVR  249 (2102)
T ss_pred             HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHH
Confidence            99999877766 567899999999999999886 899999999999998877789999999999999999964   4679


Q ss_pred             HHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC---------HHHHHHHHHHHHHHhCC-hh-----------H-
Q 008585          378 ESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS---------LGAQQAAASALCRVCTS-AE-----------M-  433 (560)
Q Consensus       378 ~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~---------~~v~~~A~~aL~~La~~-~~-----------~-  433 (560)
                      +.|+++|+|++.  ++.++.+.+.|+++.|++++.+.+         ..+++.|.|+|+|+|.+ +.           . 
T Consensus       250 E~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~r  329 (2102)
T PLN03200        250 AEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPR  329 (2102)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccc
Confidence            999999999998  477889999999999999998544         45699999999998873 00           0 


Q ss_pred             -------------------------------------------------------------------HHHHHhcCCHHHH
Q 008585          434 -------------------------------------------------------------------KKLVGEAGCTPLL  446 (560)
Q Consensus       434 -------------------------------------------------------------------~~~i~~~g~i~~L  446 (560)
                                                                                         ++.+.+.++++.|
T Consensus       330 d~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~L  409 (2102)
T PLN03200        330 SPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVL  409 (2102)
T ss_pred             hHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhh
Confidence                                                                               1112233556667


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-ChhhHHHHHHcC
Q 008585          447 IKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-SKKCKKLMISYG  525 (560)
Q Consensus       447 v~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i~~~g  525 (560)
                      +.|+...+.++|..++++|++|+.+..+....+.+.++++.|+++|.+++ ...++.++..+.+++. +..++..+++.|
T Consensus       410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIieaG  488 (2102)
T PLN03200        410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITAAG  488 (2102)
T ss_pred             hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            77777777889999999999999777777777778899999999999864 4578899999999996 457899999999


Q ss_pred             hhHHHHHhhccCchhHHHH
Q 008585          526 AIGYLKKLSEMDIPGARKL  544 (560)
Q Consensus       526 ~i~~L~~L~~~~~~~akkl  544 (560)
                      +++.|.+|+..+++..++-
T Consensus       489 aIP~LV~LL~s~~~~iqee  507 (2102)
T PLN03200        489 GIPPLVQLLETGSQKAKED  507 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHH
Confidence            9999999998887765554

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-31  Score=271.86  Aligned_cols=385  Identities=19%  Similarity=0.242  Sum_probs=329.7

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-hHHH
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-CENW  232 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-~~~~  232 (560)
                      ....+..+.++++..+..+...+..+.+... .....++..|.++.++..|... ++.+|..|+++|.+++.... .-+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            7788888999999999999999999986432 2344556669999999999855 59999999999999998765 6677


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHHhcCCch
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPE  310 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~  310 (560)
                      +++.|++|.+++++.+.+..+++.|.|+|.|++.+ +..+..+.++|++++|+.++...++ ...+.+.|+|.|||.+..
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            88999999999999999999999999999999987 6678888999999999999988766 678999999999998653


Q ss_pred             hHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585          311 VRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (560)
Q Consensus       311 ~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl  387 (560)
                      -...+.. ..++|.|..++.+.+. ++...++|+|.+|+.+..+.-+++++.|+++.|+.+|.+  +.++.+|+++++|+
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI  306 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI  306 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence            3333322 5689999999999997 899999999999998877888999999999999999987  56789999999999


Q ss_pred             hc--cccHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHH
Q 008585          388 VG--SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ  463 (560)
Q Consensus       388 a~--~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~  463 (560)
                      +.  ....+.++..|+++.|..++.. ....++++|+|+|+|++.+ .+..++++++|.+|.|+.++++.+..+|..|++
T Consensus       307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw  386 (514)
T KOG0166|consen  307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW  386 (514)
T ss_pred             eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence            98  3556788899999999999984 5667999999999999855 889999999999999999999999999999999


Q ss_pred             HHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC------C---hhhHHHHHHcChhHHHHHh
Q 008585          464 AISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP------S---KKCKKLMISYGAIGYLKKL  533 (560)
Q Consensus       464 aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~------~---~~~r~~i~~~g~i~~L~~L  533 (560)
                      +++|++ .+.++.-.++.+.+.++++..+|.-.+.+. ...++.++.++-.      .   .....+|.++|++..+..|
T Consensus       387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L  465 (514)
T KOG0166|consen  387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL  465 (514)
T ss_pred             HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence            999999 445666777778899999999996655444 6678877776652      1   4566788999999999999


Q ss_pred             hccCchhHH
Q 008585          534 SEMDIPGAR  542 (560)
Q Consensus       534 ~~~~~~~ak  542 (560)
                      ...++++..
T Consensus       466 Q~hen~~Iy  474 (514)
T KOG0166|consen  466 QSHENEEIY  474 (514)
T ss_pred             hccccHHHH
Confidence            999996533

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-31  Score=270.60  Aligned_cols=359  Identities=18%  Similarity=0.259  Sum_probs=312.6

Q ss_pred             hchHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585          153 HGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (560)
                      ...|+.++..|..+ ++..+.+|+.+|.++++++.+..+.+++.|.++.++.++.+++..++++|+++|++++.+++ +|
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R  187 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR  187 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence            35689999999744 58889999999999999999999999999999999999999999999999999999999987 99


Q ss_pred             HHHHhCCCHHHHHHhhhcCCH-HHHHHHHHHHHHhhCChhhHHHH-HhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-
Q 008585          231 NWLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAI-VGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-  307 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~l-~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-  307 (560)
                      ..+++.|++++|+.++...+. .....+.|+|.+|+...+....+ .-..++|.|..++.+.|+++...|+|+|++|+. 
T Consensus       188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999998765 68889999999999865322211 124567999999999999999999999999996 


Q ss_pred             CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHH
Q 008585          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGAL  384 (560)
Q Consensus       308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L  384 (560)
                      .++.-+.+++.|+++.|+++|.+.+. .++..|+++++|++.+++...+.++..|+++.|..++..   ..++..|+|+|
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i  346 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI  346 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence            45888889999999999999999987 799999999999999999999999999999999999974   34789999999


Q ss_pred             HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585          385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~  460 (560)
                      .|++.  .+..+.+++.|++|.|+++|..++-.+|.+|+|+|+|++.+  ++.-+++.+.|++++|+.+|.-.+..+...
T Consensus       347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v  426 (514)
T KOG0166|consen  347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILV  426 (514)
T ss_pred             HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHH
Confidence            99998  45678889999999999999999999999999999999855  788899999999999999998888888889


Q ss_pred             HHHHHHHhcCCC--------hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585          461 AAQAISSLVTLP--------QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (560)
Q Consensus       461 A~~aL~~L~~~~--------~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~  513 (560)
                      ++.+|.+|....        .....++++.+++..+-.+=.+.+ +.+.+.|..++-.--.
T Consensus       427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen-~~Iy~~A~~II~~yf~  486 (514)
T KOG0166|consen  427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHEN-EEIYKKAYKIIDTYFS  486 (514)
T ss_pred             HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcccc-HHHHHHHHHHHHHhcC
Confidence            999999997322        223457778888777766655544 4577788888875544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-32  Score=256.32  Aligned_cols=381  Identities=24%  Similarity=0.308  Sum_probs=332.3

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      +...++.+..+++.+...+..+...+.+++-. .+++..++.-+|+++|+.-+..+..++|-.++.++.+|+..+++|..
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence            33466778888999999999999999999874 44666778889999988877777889999999999999999999999


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (560)
                      +...|++.+++++-++.+..+|.++..+|.+|+...++++.++..|++|.|+.+++++++.+|..++.++.|++.+...|
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R  242 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR  242 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence            99999999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC--cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhh
Q 008585          313 QMLAEEG--IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLV  388 (560)
Q Consensus       313 ~~i~e~g--~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla  388 (560)
                      +.+++.+  .++.|+.+++++++ .++-.|..+|+||+.+. ..+..++++|++|.+++++++|.  .-...+.+|+|++
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis  320 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS  320 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence            9999977  99999999999998 89999999999999965 45678999999999999998853  3456788999999


Q ss_pred             c-cccHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585          389 G-SVSQEVLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI  465 (560)
Q Consensus       389 ~-~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL  465 (560)
                      . +-+...+.+.||+.+|+++|+.++ .++|-.|..+|+||+. ++.+++.+.+.|.+|.+..++..++.++|..-..++
T Consensus       321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~  400 (550)
T KOG4224|consen  321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI  400 (550)
T ss_pred             cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence            8 555666789999999999999876 6699999999999996 588899999999999999999999999999999999


Q ss_pred             HHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHH------cChhHHHHHhhccCc
Q 008585          466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMIS------YGAIGYLKKLSEMDI  538 (560)
Q Consensus       466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~------~g~i~~L~~L~~~~~  538 (560)
                      ..|+.....+..+. +.+.++.|+.++.+.. .+++..+..+|.|++++...-.++.+      .|.-.+|.+...++.
T Consensus       401 a~Lal~d~~k~~ll-d~gi~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~  477 (550)
T KOG4224|consen  401 AQLALNDNDKEALL-DSGIIPILIPWTGSES-EEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE  477 (550)
T ss_pred             HHHHhccccHHHHh-hcCCcceeecccCccc-hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH
Confidence            99987766655555 7899999999998864 45888999999999987765555544      344455666555554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=8.6e-30  Score=239.46  Aligned_cols=396  Identities=16%  Similarity=0.185  Sum_probs=328.0

Q ss_pred             hhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC
Q 008585          150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESG  227 (560)
Q Consensus       150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~  227 (560)
                      ..+...++++.+.|.+.+.+.+.+|...+..+++.. ......+++.|.||.+++++++. ..-.+-.|+|+|.+++...
T Consensus        67 qq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt  146 (526)
T COG5064          67 QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT  146 (526)
T ss_pred             HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence            345667899999999999999999999999998643 23455778999999999999654 4556778999999998876


Q ss_pred             c-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCCh--HHHHHHHHHHH
Q 008585          228 S-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDS--VSQAAAACTLK  303 (560)
Q Consensus       228 ~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~  303 (560)
                      . ..+.+++.|++|.++++|.+++..+++.+.|+|.|++.+ +..+..+.+.|++.+++.++.+..+  .+.+.+.|+|.
T Consensus       147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS  226 (526)
T COG5064         147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS  226 (526)
T ss_pred             ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence            5 445667999999999999999999999999999999987 5567788999999999999987655  67799999999


Q ss_pred             HhcCC--c-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHH
Q 008585          304 NISAV--P-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQE  378 (560)
Q Consensus       304 nLa~~--~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~  378 (560)
                      ||++.  | ..-..+  ..++|.|.+|+.+.++ ++..-|++++..|+.+.-+..+.+++.|....|+++|.+  ..++.
T Consensus       227 NlcRGknP~P~w~~i--sqalpiL~KLiys~D~-evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt  303 (526)
T COG5064         227 NLCRGKNPPPDWSNI--SQALPILAKLIYSRDP-EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT  303 (526)
T ss_pred             HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCH-HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence            99963  2 222222  3479999999999887 899999999999999877778889999999999999987  45789


Q ss_pred             HHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCH
Q 008585          379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPN  455 (560)
Q Consensus       379 ~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~  455 (560)
                      ++++.++|+..  ....+.++..|+++.+..+|.+....++++|||++.|+.. +.+..+++++.+.+|+|++++.+.+-
T Consensus       304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~  383 (526)
T COG5064         304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY  383 (526)
T ss_pred             HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence            99999999998  3556778899999999999999888999999999999984 58889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC---hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-----------Ch-hhHHH
Q 008585          456 SVREVAAQAISSLVTLP---QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-----------SK-KCKKL  520 (560)
Q Consensus       456 ~v~~~A~~aL~~L~~~~---~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-----------~~-~~r~~  520 (560)
                      .++..||+++.+...+.   ++.-+++.+.|.+.+|..+|+-.+.. +-+.++.++-++.+           +. ....+
T Consensus       384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk-iiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~  462 (526)
T COG5064         384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK-IIEVALDAIENILKVGEQDRLRYGKNINIYAVY  462 (526)
T ss_pred             HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc-chhhhHHHHHHHHhhhhHHHHhccCCccHHHHH
Confidence            99999999999999554   33444555789999999999987543 44455666655542           11 34556


Q ss_pred             HHHcChhHHHHHhhccCch----hHHHHHHHHh
Q 008585          521 MISYGAIGYLKKLSEMDIP----GARKLLERLE  549 (560)
Q Consensus       521 i~~~g~i~~L~~L~~~~~~----~akkl~~~l~  549 (560)
                      +-++|++..+-.+.+..+.    .|.+++++..
T Consensus       463 vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         463 VEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             HHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            6669999999999888774    4666666654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.8e-30  Score=243.08  Aligned_cols=367  Identities=22%  Similarity=0.268  Sum_probs=320.9

Q ss_pred             cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHH
Q 008585          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR  244 (560)
Q Consensus       165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~  244 (560)
                      +++...+..|+-+..+....   ..+.+ .....++.+-++.+.++.++-.+..++++++-+.+++..+++.+++..|+.
T Consensus        58 SDnlnlqrsaalafAeitek---~vr~V-sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~  133 (550)
T KOG4224|consen   58 SDNLNLQRSAALAFAEITEK---GVRRV-SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLIL  133 (550)
T ss_pred             ccccccchHHHHHHHHHHHH---HHHHh-hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHH
Confidence            34445555666566555432   22222 446788888999999999999999999999999999999999999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHH
Q 008585          245 LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVM  324 (560)
Q Consensus       245 lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L  324 (560)
                      -+.++...+|..+..|+.+|+.-++++..+...|++.++.++-++++..+|..+.++|.|++...|+|+.++..|++|.|
T Consensus       134 qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvL  213 (550)
T KOG4224|consen  134 QMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVL  213 (550)
T ss_pred             HhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhh
Confidence            88888888999999999999998999999999999999999888899999999999999999999999999999999999


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCC--CHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhC
Q 008585          325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG--GIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISL  399 (560)
Q Consensus       325 ~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g--~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~  399 (560)
                      +.++++++. ++|++++.++.|++-. ...|+.+.+.+  .++.|+.++++  ++++-.|.-+|+|++. .+++..+++.
T Consensus       214 Vsll~s~d~-dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a  291 (550)
T KOG4224|consen  214 VSLLKSGDL-DVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA  291 (550)
T ss_pred             hhhhccCCh-hHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence            999999997 8999999999999985 56678888887  99999999987  6678899999999999 7888999999


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhcC-CChhhHH
Q 008585          400 GFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPN-SVREVAAQAISSLVT-LPQNCRE  477 (560)
Q Consensus       400 ~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~-~v~~~A~~aL~~L~~-~~~~~~~  477 (560)
                      |.+|.++++|+++....-...+.++.|++.++-+...+.++|++.+|++++..++. +++..|..+|++|+. ...|.+.
T Consensus       292 g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~  371 (550)
T KOG4224|consen  292 GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSV  371 (550)
T ss_pred             CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHH
Confidence            99999999999888777788889999999999898999999999999999987654 599999999999996 4555554


Q ss_pred             HhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCch
Q 008585          478 VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIP  539 (560)
Q Consensus       478 ~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~  539 (560)
                       +...+.++.+..++-+++- .++...-.++..|+-+...+..+.+.|.++.|..++..+.+
T Consensus       372 -i~esgAi~kl~eL~lD~pv-svqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~  431 (550)
T KOG4224|consen  372 -IRESGAIPKLIELLLDGPV-SVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESE  431 (550)
T ss_pred             -HhhcCchHHHHHHHhcCCh-hHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccch
Confidence             4568999999999888754 46777888899999888999999999999999998876653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=1.9e-29  Score=237.08  Aligned_cols=357  Identities=17%  Similarity=0.250  Sum_probs=302.4

Q ss_pred             hchHHHHHHHHccCCH-HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585          153 HGNTRELLARLQIGHL-EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~-~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (560)
                      ...++.++..+..... --+.+|+.+|.+++++.....+.+++.|.||.++++|.+++.+++++++|+|++++++++ +|
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R  192 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR  192 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence            4468888888854444 448899999999999888777888999999999999999999999999999999999987 99


Q ss_pred             HHHHhCCCHHHHHHhhhcCC--HHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585          231 NWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (560)
                      +.+.+.|++.+++.++.+..  ..+...+.|+|.||+.  +|+.-|.-+ ...+|.|.+++.+.|+++...|+|++.+|+
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYls  271 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLS  271 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence            99999999999999998874  4778899999999987  444444322 235689999999999999999999999999


Q ss_pred             CCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHH
Q 008585          307 AVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA  383 (560)
Q Consensus       307 ~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~  383 (560)
                      ..+ +....+.+.|+.+.|+++|.+++. .++..+++.++|+..+++...+.+++.|.++.+..+|.+  ..++..++|.
T Consensus       272 Dg~~E~i~avld~g~~~RLvElLs~~sa-~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT  350 (526)
T COG5064         272 DGPNEKIQAVLDVGIPGRLVELLSHESA-KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT  350 (526)
T ss_pred             cCcHHHHHHHHhcCCcHHHHHHhcCccc-cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence            866 777888899999999999999887 899999999999999998888889999999999999988  4689999999


Q ss_pred             HHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC----hhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585          384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (560)
Q Consensus       384 L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~----~~~~~~i~~~g~i~~Lv~ll~s~~~~v  457 (560)
                      |.|+..  .+..+.+++.+.+|+|+++|..-+..++++|||++.|...+    |+.-+++.+.|++++|.++|.-.+..+
T Consensus       351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki  430 (526)
T COG5064         351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI  430 (526)
T ss_pred             ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence            999998  46678889999999999999999999999999999999865    889999999999999999999877778


Q ss_pred             HHHHHHHHHHhcCCC----------hh-hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          458 REVAAQAISSLVTLP----------QN-CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       458 ~~~A~~aL~~L~~~~----------~~-~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      -+.++.++.++....          .| ...++.+.+++..+..+-++.+ ..+...+..++-...
T Consensus       431 iev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n-~~iy~KAYsIIe~fF  495 (526)
T COG5064         431 IEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVN-RTIYDKAYSIIEKFF  495 (526)
T ss_pred             hhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccc-cHHHHHHHHHHHHHc
Confidence            888888888886221          11 3456667788777766666554 345555666655443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=2.7e-23  Score=222.69  Aligned_cols=368  Identities=18%  Similarity=0.200  Sum_probs=309.0

Q ss_pred             HHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCC
Q 008585          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS  250 (560)
Q Consensus       171 ~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~  250 (560)
                      .+.++..|.+++. +++....+...|+++.|+++|++++.++...++.+|..|+...+++..+.+.|+++.|++++.+++
T Consensus       266 lrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~  344 (708)
T PF05804_consen  266 LRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN  344 (708)
T ss_pred             HHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence            4456777888886 667878888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc
Q 008585          251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC  330 (560)
Q Consensus       251 ~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~  330 (560)
                      ..++..+.++|.||+.+++.+..+++.|++|.|+.+|.+  +..+..+..+|+|+|.+++++..+...+++|.+++++.+
T Consensus       345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~  422 (708)
T PF05804_consen  345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLE  422 (708)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHh
Confidence            999999999999999999999999999999999999985  456678999999999999999999999999999998776


Q ss_pred             CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHHHhhccc-cHHHHHhCCcHHHHHHH
Q 008585          331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVGSV-SQEVLISLGFFPRLVHV  408 (560)
Q Consensus       331 ~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~nla~~~-~~~~l~~~~~i~~Lv~l  408 (560)
                      +....+...++.++.|++.+ +.+.+.+.+.|+++.|++..-. .+  ...+.+|+|++.++ ..+.. -.+++..|+..
T Consensus       423 ~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D--~lLlKlIRNiS~h~~~~k~~-f~~~i~~L~~~  498 (708)
T PF05804_consen  423 NSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRD--PLLLKLIRNISQHDGPLKEL-FVDFIGDLAKI  498 (708)
T ss_pred             CCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhccc--HHHHHHHHHHHhcCchHHHH-HHHHHHHHHHH
Confidence            54446777889999999986 5567888898999999987633 22  33568999999943 22222 23578888888


Q ss_pred             HhcC-CHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCChhhHHHhhhCCC
Q 008585          409 LKAG-SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTLPQNCREVKRDDKS  484 (560)
Q Consensus       409 L~~~-~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~  484 (560)
                      +..+ +.+...++..+|+||... .+..+.+.+.+.+|.|.+++..+  .+++...+...++.++.++ .+...+...+.
T Consensus       499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~-~~A~lL~~sgl  577 (708)
T PF05804_consen  499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP-ECAPLLAKSGL  577 (708)
T ss_pred             hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH-HHHHHHHhCCh
Confidence            8764 689999999999999855 56777777889999999999754  4568888889999887654 44556656899


Q ss_pred             hHHHHhccCCC-CchhhHHHHHHHHHHhCCChhhHHHHHH-cChhHHHHHhhccCchhHHHHHH
Q 008585          485 VPNLVQLLDPS-PQNTAKKYAVACLASLSPSKKCKKLMIS-YGAIGYLKKLSEMDIPGARKLLE  546 (560)
Q Consensus       485 v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~i~~-~g~i~~L~~L~~~~~~~akkl~~  546 (560)
                      ++.|+.+|... ++++.....+.++..+..++..|..|++ .++..+|.+|..-.++..+|...
T Consensus       578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d  641 (708)
T PF05804_consen  578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCD  641 (708)
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHH
Confidence            99999999887 4556777899999999999999998865 78999999998888776665543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=5.4e-22  Score=212.70  Aligned_cols=361  Identities=17%  Similarity=0.169  Sum_probs=305.4

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      +..|..|+..|+.++.+....++..|..|+- ..+|+..+.+.|.++.|++++++++.+++..++++|.||+.+++.|..
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~  367 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ  367 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            6678999999999999999889888888876 455888899999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchh
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEV  311 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~  311 (560)
                      +++.|++|.|+.+|++++  .+..+..+|++||.+++++..|...++++.+++++-. +++.+...++..+.|++.++.+
T Consensus       368 mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn  445 (708)
T PF05804_consen  368 MVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN  445 (708)
T ss_pred             HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence            999999999999998654  5677999999999999999999999999999998654 6677778889999999999999


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhh
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLV  388 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla  388 (560)
                      .+.+.+.|+++.|++..-+..+ .+   .+.++.|++.+++..+..+.  +.+..|+..+..   ++....++++|+|+.
T Consensus       446 aqlm~~g~gL~~L~~ra~~~~D-~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  446 AQLMCEGNGLQSLMKRALKTRD-PL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHHhcCcHHHHHHHHHhccc-HH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            9999999999999998765553 22   34699999998766665544  357777777754   456778899999998


Q ss_pred             cc--ccHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHH
Q 008585          389 GS--VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAA  462 (560)
Q Consensus       389 ~~--~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~  462 (560)
                      .+  .....+.+.++++.|.+.|..+  .+++..+++..++.++.+++....+.+.|.++.|+.++.++  +.+.....+
T Consensus       520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil  599 (708)
T PF05804_consen  520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL  599 (708)
T ss_pred             cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence            73  3445555789999999999865  46899999999999999999999999999999999999864  567888899


Q ss_pred             HHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-ChhhHHHHHH
Q 008585          463 QAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-SKKCKKLMIS  523 (560)
Q Consensus       463 ~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i~~  523 (560)
                      .++..+..|++.+..++.+.+.+.+|+.++++.+. .+++.+=.+|--++. +++..++|..
T Consensus       600 ~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~-~ir~~~d~~Ldii~e~d~~w~~ri~~  660 (708)
T PF05804_consen  600 YVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNA-EIRKVCDNALDIIAEYDEEWAERIRR  660 (708)
T ss_pred             HHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhCHHHHHHhhH
Confidence            99999999999999999989999999999999865 467777777776664 4455555544

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=3.4e-18  Score=161.52  Aligned_cols=310  Identities=18%  Similarity=0.226  Sum_probs=259.9

Q ss_pred             HccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCH
Q 008585          163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVSEGVL  239 (560)
Q Consensus       163 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i  239 (560)
                      -.+++.....+++..|..+....|    .+.+..+...++.+|..  ++.++....+..+..-+...+ +|+.+++.+++
T Consensus       116 a~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  116 AESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            356777788899999999988777    45677889999999864  457777788877777766555 99999999999


Q ss_pred             HHHHHhhhcC-CHHHHHHHHHHHHHhhCChhh----------HHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcC
Q 008585          240 PPLIRLVESG-STVGKEKATISLQRLSMSAEM----------ARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISA  307 (560)
Q Consensus       240 ~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~----------~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~  307 (560)
                      +.+.+.|... ...+....+++++.|..+++.          .+.|++.|++..|++.++. -+|.+....+.+|..|+.
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            9999877665 445777889999999887655          4678888999999999975 579999999999999999


Q ss_pred             CchhHHHHHhcCcHHHHHHHhhcCCchhHH---HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc----cCCccHHHH
Q 008585          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSK---EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESA  380 (560)
Q Consensus       308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~---~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll----~~~~~~~~a  380 (560)
                      .+|+|+.+.|.|++..++.++.+.++..++   ..++..|..|+.+ ++++..+++.||.+.++.++    ++|.+-+.+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            999999999999999999999884433555   5677888888874 67789999999999998886    347788899


Q ss_pred             HHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC--HHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHccCCH
Q 008585          381 VGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPN  455 (560)
Q Consensus       381 ~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~  455 (560)
                      +.++.-+|.  ++....+++.|+-...++.|+...  ..+|++|+++++|++ ++.++++.+...| ++.|+...++.++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCc
Confidence            999999997  778888899999999999998754  789999999999998 5577888777766 9999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChhhHHH
Q 008585          456 SVREVAAQAISSLVTLPQNCREV  478 (560)
Q Consensus       456 ~v~~~A~~aL~~L~~~~~~~~~~  478 (560)
                      .++..|..+|..|..+..+++.-
T Consensus       430 tce~~akaALRDLGc~v~lre~w  452 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGCDVYLREEW  452 (461)
T ss_pred             cHHHHHHHHHHhcCcchhhHHHh
Confidence            99999999999998888877653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.83  E-value=1.5e-18  Score=181.90  Aligned_cols=373  Identities=21%  Similarity=0.209  Sum_probs=297.8

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC---chH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG---SCE  230 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~---~~~  230 (560)
                      -.+++.+..|.+.++..+..|+..+..++..+.+.+..+...|+|+.|+.+|++.+.+++.+|+.+|.||....   +++
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            35788899999999999999999999999999999999999999999999999999999999999999998754   378


Q ss_pred             HHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc--------cC------ChHHH
Q 008585          231 NWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--------TG------DSVSQ  295 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~--------~~------~~~~~  295 (560)
                      -.+.+.++++.++++|+. .|.++++....+|+||+.++..+..++. ..+..|..-.-        .+      +..+-
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            888999999999999997 6999999999999999998666655543 23333333221        11      24566


Q ss_pred             HHHHHHHHHhcC-CchhHHHHHh-cCcHHHHHHHhhc------CCchhHHHHHHHHHHHHccCCh-----hHHHHHHhC-
Q 008585          296 AAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNE-----NLRRSVVSE-  361 (560)
Q Consensus       296 ~~a~~aL~nLa~-~~~~~~~i~e-~g~v~~L~~lL~~------~~~~~v~~~a~~~L~~La~~~~-----~~~~~i~~~-  361 (560)
                      ..+.++|+|++. ..+.++.|.+ .|.|..|+.++.+      .++ ...++|..+|.|+...-+     ..++..... 
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~-K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~  470 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDS-KSVENCVCILRNLSYRLEAEVPPKYRQVLANIA  470 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccc-hhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence            899999999987 7799999998 8999999998862      233 688999999999987322     111111110 


Q ss_pred             ---------------------------------------C--------CHHHHHHhcc---CCccHHHHHHHHHHhhcc-
Q 008585          362 ---------------------------------------G--------GIRSLLAYLD---GPLPQESAVGALRNLVGS-  390 (560)
Q Consensus       362 ---------------------------------------g--------~l~~L~~ll~---~~~~~~~a~~~L~nla~~-  390 (560)
                                                             |        ++...+.++.   ++.+.+.+.++|-|++.. 
T Consensus       471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~  550 (717)
T KOG1048|consen  471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL  550 (717)
T ss_pred             ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence                                                   0        1333233332   256789999999999981 


Q ss_pred             -----ccH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC------CHHHH
Q 008585          391 -----VSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK------PNSVR  458 (560)
Q Consensus       391 -----~~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~------~~~v~  458 (560)
                           ..+ ..+..+.+.++|+++|+.+++.|...++.+|.||+.+..++..|. .++++.|++.+...      +.++-
T Consensus       551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv  629 (717)
T KOG1048|consen  551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTV  629 (717)
T ss_pred             CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHH
Confidence                 122 233678889999999999999999999999999999999999997 56799999999643      25677


Q ss_pred             HHHHHHHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHH
Q 008585          459 EVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYL  530 (560)
Q Consensus       459 ~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L  530 (560)
                      ..++.+|.++. ....|.+.++ +.++++.|+-+..+...+...+++...+..|-.+++.|..+...|+-+..
T Consensus       630 ~~vc~tl~niv~~~~~nAkdl~-~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q~~  701 (717)
T KOG1048|consen  630 RAVCHTLNNIVRKNVLNAKDLL-EIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQQD  701 (717)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHH-hccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHH
Confidence            88999999999 5667777777 57889999999888655467779999999999999999999888887754

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.82  E-value=2.6e-18  Score=180.17  Aligned_cols=338  Identities=19%  Similarity=0.221  Sum_probs=274.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC---hhhHHH
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS---AEMARA  273 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~  273 (560)
                      ++..+.+|.+.++.+|-.|+..+..++..+. .+..+.+.|+|+.|+.+|...+.+++..|+++|.||...   .+|+-.
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            6777889999999999999999999998765 888999999999999999999999999999999999763   458899


Q ss_pred             HHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcC---------C----chhHHHH
Q 008585          274 IVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG---------I----LLGSKEY  339 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~---------~----~~~v~~~  339 (560)
                      +.+.++++.++++++. .|.+++.....+||||++++..+..++.. ++..|..-+-.+         +    +..+-.+
T Consensus       315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n  393 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN  393 (717)
T ss_pred             hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence            9999999999999986 89999999999999999998888888774 555555544211         1    1267889


Q ss_pred             HHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--------CccHHHHHHHHHHhhc--c-ccH----H---------
Q 008585          340 AAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------PLPQESAVGALRNLVG--S-VSQ----E---------  394 (560)
Q Consensus       340 a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--------~~~~~~a~~~L~nla~--~-~~~----~---------  394 (560)
                      +..||.|++....+.|+.+.+ .|.|+.|+.++++        ....++|+.+++|++.  . +..    .         
T Consensus       394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~  473 (717)
T KOG1048|consen  394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLP  473 (717)
T ss_pred             hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccc
Confidence            999999999977777888876 7889999998863        4568999999999987  1 100    0         


Q ss_pred             -----------------H----------------------HHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCC----
Q 008585          395 -----------------V----------------------LISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS----  430 (560)
Q Consensus       395 -----------------~----------------------l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~----  430 (560)
                                       .                      +....+|..-..+|. +.++.+.+.++.+|-|++-.    
T Consensus       474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~  553 (717)
T KOG1048|consen  474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW  553 (717)
T ss_pred             cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence                             0                      011122333344444 35688999999999999843    


Q ss_pred             -hhHHHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCc-----hhhHHH
Q 008585          431 -AEMKKLV-GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKY  503 (560)
Q Consensus       431 -~~~~~~i-~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~~~~  503 (560)
                       ...+..+ .++.+.+.|+++++.++..+...++.+|.||+.+..|+..+-  ..+++.|+..|.....     +.....
T Consensus       554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig--k~a~~~lv~~Lp~~~~~~~~sedtv~~  631 (717)
T KOG1048|consen  554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG--KYAIPDLVRCLPGSGPSTSLSEDTVRA  631 (717)
T ss_pred             hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh--cchHHHHHHhCcCCCCCcCchHHHHHH
Confidence             3455555 677899999999999999999999999999999999977766  4889999999987633     445667


Q ss_pred             HHHHHHHhC-CChhhHHHHHHcChhHHHHHhhccCc
Q 008585          504 AVACLASLS-PSKKCKKLMISYGAIGYLKKLSEMDI  538 (560)
Q Consensus       504 a~~~L~~L~-~~~~~r~~i~~~g~i~~L~~L~~~~~  538 (560)
                      ++..+.++. .+..+.+.+.+.++++.|+.|.....
T Consensus       632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~  667 (717)
T KOG1048|consen  632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH  667 (717)
T ss_pred             HHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC
Confidence            778888887 57799999999999999999987743

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.82  E-value=5.4e-17  Score=172.56  Aligned_cols=367  Identities=18%  Similarity=0.222  Sum_probs=289.4

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCC
Q 008585          159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEG  237 (560)
Q Consensus       159 Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g  237 (560)
                      ++..|++.+.+....++..|..+....+-.  .+ ..+..+.|...|.++++.+|..+++.|+++..+++ ....+.+.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~--~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPD--SL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHH--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            888899888888888888888887643311  11 44678999999999999999999999999998876 566777889


Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA  316 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~  316 (560)
                      +++.++..+.+++..+...|+.+|.+++.++.....++..+.+..|..++...++.+|..+..++.+++. +++....+.
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~  199 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV  199 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999999999988888888899999999999988888999999999999985 668888888


Q ss_pred             hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--Ccc------HHHHHHHHHHhh
Q 008585          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLP------QESAVGALRNLV  388 (560)
Q Consensus       317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~------~~~a~~~L~nla  388 (560)
                      +.|+++.++..+++++. -++.+++++|..|+.. +...+++.+.|+++.|..++.+  .++      ....+.+.++++
T Consensus       200 ~sgll~~ll~eL~~dDi-Lvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la  277 (503)
T PF10508_consen  200 NSGLLDLLLKELDSDDI-LVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA  277 (503)
T ss_pred             hccHHHHHHHHhcCccH-HHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence            89999999999999664 6899999999999994 5557899999999999999965  121      234457777777


Q ss_pred             ccccHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHH-HhcC-----CHHHHHHHHccCCHHHHHH
Q 008585          389 GSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLV-GEAG-----CTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       389 ~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i-~~~g-----~i~~Lv~ll~s~~~~v~~~  460 (560)
                      .. ....+..  ..++..+.+++.+.|+..+..|..+++.++.+.+.+..+ ...|     .+...-....+...++|..
T Consensus       278 ~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r  356 (503)
T PF10508_consen  278 RV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLR  356 (503)
T ss_pred             hc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHH
Confidence            63 1222221  356777788888999999999999999999998888888 4432     3444444455677889999


Q ss_pred             HHHHHHHhcCCChh---------hHHHhh--hCCChH-HHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHH-HHcChh
Q 008585          461 AAQAISSLVTLPQN---------CREVKR--DDKSVP-NLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM-ISYGAI  527 (560)
Q Consensus       461 A~~aL~~L~~~~~~---------~~~~~~--~~~~v~-~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i-~~~g~i  527 (560)
                      +..+|.++......         .+..+.  ..+... .++.+++. |+++++..+...+..|+.++-+.+.| ...|++
T Consensus       357 ~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfi  435 (503)
T PF10508_consen  357 ALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-PFPELRCAAYRLLQALAAQPWGQREICSSPGFI  435 (503)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHH
Confidence            99999999632221         111111  122233 55566654 57789999999999999999555545 567888


Q ss_pred             HHHHH
Q 008585          528 GYLKK  532 (560)
Q Consensus       528 ~~L~~  532 (560)
                      ++|.+
T Consensus       436 e~lld  440 (503)
T PF10508_consen  436 EYLLD  440 (503)
T ss_pred             hhhcC
Confidence            88874

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=2e-14  Score=136.28  Aligned_cols=321  Identities=17%  Similarity=0.244  Sum_probs=252.1

Q ss_pred             hCCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhC-C
Q 008585          194 GRSNIAALVQLLT---ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSM-S  267 (560)
Q Consensus       194 ~~g~v~~Lv~lL~---~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~-~  267 (560)
                      ..|..+.++.++.   +++..+..+++.+|..+....+   .+.+..++..++.+|...  +.++-.....++..-+. +
T Consensus       102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h  178 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH  178 (461)
T ss_pred             cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence            4566666665543   4556777888888888876553   566778899999998764  66677777778877765 6


Q ss_pred             hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchh----------HHHHHhcCcHHHHHHHhhcCCchhH
Q 008585          268 AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEV----------RQMLAEEGIVSVMIKLLDCGILLGS  336 (560)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~----------~~~i~e~g~v~~L~~lL~~~~~~~v  336 (560)
                      +.+++.|++.++.+.+...+.. +...+.+..+++++-|..++++          .+.|..+|++..|++.+.-+-+..+
T Consensus       179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~  258 (461)
T KOG4199|consen  179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS  258 (461)
T ss_pred             HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence            7789999999999999867654 5557889999999999765443          4667788899999999987655578


Q ss_pred             HHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC---c---cHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHH
Q 008585          337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP---L---PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVL  409 (560)
Q Consensus       337 ~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~---~---~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL  409 (560)
                      ....+.+|..|+-.+ +.++.+.+.||+..+++++++.   .   .-..++..|+.++. .+.+..+++.|+.+.++.++
T Consensus       259 L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~  337 (461)
T KOG4199|consen  259 LVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLA  337 (461)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHH
Confidence            889999999999864 5578899999999999999772   2   34578888999988 67889999999999999987


Q ss_pred             hc--CCHHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCChhhHHHhhhCCC
Q 008585          410 KA--GSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTLPQNCREVKRDDKS  484 (560)
Q Consensus       410 ~~--~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~  484 (560)
                      ..  .+|.|-+.++.+++-|+ +.|++...+++.|+-...++.++..  ...+|..|++++.||+.+..+.+..+- +.+
T Consensus       338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~G  416 (461)
T KOG4199|consen  338 LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANG  416 (461)
T ss_pred             HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hcc
Confidence            53  67999999999999999 7799999999999999999999754  455899999999999966555444443 367


Q ss_pred             hHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHH
Q 008585          485 VPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKL  520 (560)
Q Consensus       485 v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~  520 (560)
                      ++.|+..-..+ +++....+-.+|..|--+..+|..
T Consensus       417 iE~Li~~A~~~-h~tce~~akaALRDLGc~v~lre~  451 (461)
T KOG4199|consen  417 IEKLIRTAKAN-HETCEAAAKAALRDLGCDVYLREE  451 (461)
T ss_pred             HHHHHHHHHhc-CccHHHHHHHHHHhcCcchhhHHH
Confidence            89998887765 334666777778777666655543

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.72  E-value=4.7e-16  Score=169.30  Aligned_cols=318  Identities=18%  Similarity=0.186  Sum_probs=253.7

Q ss_pred             hHHHHHHHHccC---CHHHHHHHHHHHHHHHhhChHHHHHHhhCCC----------HHHHHHhhcCCC-------HHHHH
Q 008585          155 NTRELLARLQIG---HLEAKHKALDSLVEAMKEDEKNVLAVMGRSN----------IAALVQLLTATS-------PRIRE  214 (560)
Q Consensus       155 ~i~~Ll~~L~~~---~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~----------v~~Lv~lL~~~~-------~~v~~  214 (560)
                      -++-|+++|+-.   +.+.+..|-.+|.++....++....=.+...          -..+-.++....       .+=+.
T Consensus       236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~l  315 (2195)
T KOG2122|consen  236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQL  315 (2195)
T ss_pred             chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhh
Confidence            367778888643   3466888888999998765543221111111          122222333221       22244


Q ss_pred             -HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC------------CHHHHHHHHHHHHHhhCC-hhhHHHHH-hCCC
Q 008585          215 -KTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG------------STVGKEKATISLQRLSMS-AEMARAIV-GHGG  279 (560)
Q Consensus       215 -~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~~La~~-~~~~~~l~-~~g~  279 (560)
                       .|+.+|..++.++++|..+.+.|++..+-+++.-.            ...+|.++..+|.||+.. ..|+..++ ..|+
T Consensus       316 caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf  395 (2195)
T KOG2122|consen  316 CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF  395 (2195)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence             67889999999999999999999999999987521            456899999999999885 55666666 4799


Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHH
Q 008585          280 VRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS  357 (560)
Q Consensus       280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~  357 (560)
                      ++.+|..|.+...++..-.+.+|+||+=  +...++.+-|.|-+..|+...............+.+||||+.+..+++..
T Consensus       396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~  475 (2195)
T KOG2122|consen  396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE  475 (2195)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence            9999999998888999999999999983  44677888889999998887543332267888999999999988888988


Q ss_pred             HHh-CCCHHHHHHhccC------CccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585          358 VVS-EGGIRSLLAYLDG------PLPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (560)
Q Consensus       358 i~~-~g~l~~L~~ll~~------~~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (560)
                      |.. .|++..|+.+|..      -.+.+.+-++|+|.+.     ...++.+.+.+.+..|+..|++.+-.+..++|.+||
T Consensus       476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW  555 (2195)
T KOG2122|consen  476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW  555 (2195)
T ss_pred             hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence            887 7889999999954      3467899999999987     356778889999999999999999999999999999


Q ss_pred             HHh-CChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585          426 RVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (560)
Q Consensus       426 ~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~  472 (560)
                      ||+ ++++.++.+++.|.++.|..++++++..+.+-++.+|.||..+.
T Consensus       556 NLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  556 NLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            997 77999999999999999999999999999999999999998655

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.69  E-value=1.1e-13  Score=147.18  Aligned_cols=337  Identities=19%  Similarity=0.186  Sum_probs=265.5

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      .....+.+...|.+.++.+|.-++..+..++.+++.....+.+.+.++.++.+|.+++..+...|+.+|..++.++....
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~  154 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE  154 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence            34456777788899999999999999999998887767777788999999999999999999999999999999888777


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCch
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE  310 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~  310 (560)
                      .++..+.++.|..++...+..+|..+..++.+++. +++....+...|.++.++..+.+.|.-++..++.+|..|+..+.
T Consensus       155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~  234 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH  234 (503)
T ss_pred             HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence            88899999999999999888899999999999976 57777788889999999999999999999999999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCchh----HH-HHHHHHHHHHccCChhHHHHHHh--CCCHHHHHHhccC--CccHHHHH
Q 008585          311 VRQMLAEEGIVSVMIKLLDCGILLG----SK-EYAAECLQNLTASNENLRRSVVS--EGGIRSLLAYLDG--PLPQESAV  381 (560)
Q Consensus       311 ~~~~i~e~g~v~~L~~lL~~~~~~~----v~-~~a~~~L~~La~~~~~~~~~i~~--~g~l~~L~~ll~~--~~~~~~a~  381 (560)
                      ..+.+.+.|+++.+..++.+.....    +. -..+...++++..++.   .+..  ...+..+..++++  +..+..|+
T Consensus       235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~---~v~~~~p~~~~~l~~~~~s~d~~~~~~A~  311 (503)
T PF10508_consen  235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ---EVLELYPAFLERLFSMLESQDPTIREVAF  311 (503)
T ss_pred             HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            9999999999999999997643312    12 2233667777764332   1111  2234555666655  66789999


Q ss_pred             HHHHHhhc-cccHHHH-HhC-Cc----HHHHHHHHhcCCHHHHHHHHHHHHHHhCC--h-------hHHHHHHh---cCC
Q 008585          382 GALRNLVG-SVSQEVL-ISL-GF----FPRLVHVLKAGSLGAQQAAASALCRVCTS--A-------EMKKLVGE---AGC  442 (560)
Q Consensus       382 ~~L~nla~-~~~~~~l-~~~-~~----i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~-------~~~~~i~~---~g~  442 (560)
                      .+++.++. .++...+ ... +.    +..+.....++..+++..+..++.++-..  +       ...+...+   .+.
T Consensus       312 dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~  391 (503)
T PF10508_consen  312 DTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSP  391 (503)
T ss_pred             HHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCc
Confidence            99999998 4566666 332 23    44444455567789999999999999432  1       11222222   234


Q ss_pred             HH-HHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhc
Q 008585          443 TP-LLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQL  491 (560)
Q Consensus       443 i~-~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~l  491 (560)
                      .. .++.+++.+-+++|..+...|..|+.++-..+.+....|.++.++.-
T Consensus       392 ~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr  441 (503)
T PF10508_consen  392 LSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDR  441 (503)
T ss_pred             hHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCC
Confidence            44 77888888889999999999999999999999988877777777644

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-14  Score=141.92  Aligned_cols=371  Identities=15%  Similarity=0.082  Sum_probs=281.9

Q ss_pred             ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC----C---HHHHHHHHHHHHHHhcCCc-hHHHHHh
Q 008585          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT----S---PRIREKTVTVICSLAESGS-CENWLVS  235 (560)
Q Consensus       164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~----~---~~v~~~A~~~L~~La~~~~-~~~~l~~  235 (560)
                      .+.+.++-.++.++|.+++.++.+++..+.+.||-+.++.+|+..    +   .+.-..+...|.|-..+.+ .+.++.+
T Consensus        97 sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~  176 (604)
T KOG4500|consen   97 SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVAD  176 (604)
T ss_pred             CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHh
Confidence            566788999999999999999999999999999988788877642    2   3445556667777766554 8999999


Q ss_pred             CCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhC-Chhh-HHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCch
Q 008585          236 EGVLPPLIRLVESG--STVGKEKATISLQRLSM-SAEM-ARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPE  310 (560)
Q Consensus       236 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~-~~~~-~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~  310 (560)
                      .|+++.|...+.-+  +...-+.......+|.. ..++ .....+......+++++.+ -.++...+....|...+.++.
T Consensus       177 ~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~  256 (604)
T KOG4500|consen  177 AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL  256 (604)
T ss_pred             cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc
Confidence            99999999887654  55555555555555533 2332 2334456667788888865 567888999999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCch-------hHHHHHHHHHHHHccCChhHHHHHHhCC-CHHHHHHhccC--CccHHHH
Q 008585          311 VRQMLAEEGIVSVMIKLLDCGILL-------GSKEYAAECLQNLTASNENLRRSVVSEG-GIRSLLAYLDG--PLPQESA  380 (560)
Q Consensus       311 ~~~~i~e~g~v~~L~~lL~~~~~~-------~v~~~a~~~L~~La~~~~~~~~~i~~~g-~l~~L~~ll~~--~~~~~~a  380 (560)
                      ++-.+++.|.+..++++++.-.+.       ..-..++....-+..+++.. +.+...+ .++.+..-+++  .+.+..+
T Consensus       257 Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~d~~l~t~g  335 (604)
T KOG4500|consen  257 VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSDDSNLITMG  335 (604)
T ss_pred             eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCCchhHHHHH
Confidence            999999999999999999862211       12223444444455566654 4555555 67777777876  4567788


Q ss_pred             HHHHHHhhc-cccHHHHHhCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC
Q 008585          381 VGALRNLVG-SVSQEVLISLGFFPRLVHVLKA-----GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP  454 (560)
Q Consensus       381 ~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~  454 (560)
                      .-+|+|+++ .+....+++.+++..|+..|..     ++.++|..++.+|+|+.....++..+..+|..+.++.+++...
T Consensus       336 ~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~  415 (604)
T KOG4500|consen  336 SLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLAS  415 (604)
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcC
Confidence            889999999 6677888999999999998854     5689999999999999999889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCh-hhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChh---hHHHHHHcChhHHH
Q 008585          455 NSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKK---CKKLMISYGAIGYL  530 (560)
Q Consensus       455 ~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~---~r~~i~~~g~i~~L  530 (560)
                      +.+...-...+..+.-..+ -..+..++...+..|+..-+++++..+.......+..+.++.+   ....+.+.|+++..
T Consensus       416 ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~  495 (604)
T KOG4500|consen  416 PPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEK  495 (604)
T ss_pred             CcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHH
Confidence            9999999999998875444 4566666667778888888888766566666667776666543   44556678888877


Q ss_pred             HHhhc
Q 008585          531 KKLSE  535 (560)
Q Consensus       531 ~~L~~  535 (560)
                      +.+.-
T Consensus       496 Vsm~t  500 (604)
T KOG4500|consen  496 VSMFT  500 (604)
T ss_pred             HHHHH
Confidence            76643

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=1.5e-14  Score=157.83  Aligned_cols=352  Identities=18%  Similarity=0.216  Sum_probs=266.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCCc----hH
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS---PRIREKTVTVICSLAESGS----CE  230 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~---~~v~~~A~~~L~~La~~~~----~~  230 (560)
                      .++..+...+.   .+-...|.++.. +++....++..|.++.|+++|-.++   .+.+..|-.+|.++....+    .|
T Consensus       201 sllsml~t~D~---ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R  276 (2195)
T KOG2122|consen  201 SLLSMLGTDDE---EEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR  276 (2195)
T ss_pred             HHhhhcccCCH---HHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence            44455544444   455566777665 5666677888999999999997654   6788889999999987653    12


Q ss_pred             HHHHhCCCHHHHHH-------hhhcC-------CHHHHH-HHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC-----
Q 008585          231 NWLVSEGVLPPLIR-------LVESG-------STVGKE-KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-----  290 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~-------lL~~~-------~~~~~~-~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~-----  290 (560)
                      ..+.-.-++..+..       .+...       +..-+. .|..+|.+++.+++.+..+.+-|++.++-+++.-.     
T Consensus       277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhg  356 (2195)
T KOG2122|consen  277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHG  356 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            22111111221111       12211       222333 67788999999999999999999999999987521     


Q ss_pred             -------ChHHHHHHHHHHHHhcCCc-hhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-h
Q 008585          291 -------DSVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV-S  360 (560)
Q Consensus       291 -------~~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~-~  360 (560)
                             ...+|+.+..+|.||...+ .|+..+.. .|++.+++..|.+..+ ++....+.+|.||+...+.+...++ +
T Consensus       357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE  435 (2195)
T KOG2122|consen  357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRE  435 (2195)
T ss_pred             CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHh
Confidence                   2368999999999999754 67777765 8999999999998886 7888889999999986655555555 6


Q ss_pred             CCCHHHHHHhc-cC--CccHHHHHHHHHHhhc--cccHHHHH-hCCcHHHHHHHHhcC----CHHHHHHHHHHHHHHhCC
Q 008585          361 EGGIRSLLAYL-DG--PLPQESAVGALRNLVG--SVSQEVLI-SLGFFPRLVHVLKAG----SLGAQQAAASALCRVCTS  430 (560)
Q Consensus       361 ~g~l~~L~~ll-~~--~~~~~~a~~~L~nla~--~~~~~~l~-~~~~i~~Lv~lL~~~----~~~v~~~A~~aL~~La~~  430 (560)
                      .|-+-.|.... ..  .......+.+|+||+.  .+++..|. -.|.+..|+.+|...    ...+.+.+-.+|.|.+..
T Consensus       436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~  515 (2195)
T KOG2122|consen  436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL  515 (2195)
T ss_pred             hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence            88888888774 33  5678899999999998  46666554 458899999999754    357778888899988754


Q ss_pred             ----hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHH
Q 008585          431 ----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA  506 (560)
Q Consensus       431 ----~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~  506 (560)
                          +++|+.+.+.+++..|++.|++.+..+.-.+|.+||||....+.-.++++|.+.+..|..++++... .+.+.+..
T Consensus       516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhk-MIa~GSaa  594 (2195)
T KOG2122|consen  516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHK-MIAMGSAA  594 (2195)
T ss_pred             hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhh-hhhhhHHH
Confidence                8899999999999999999999999999999999999997766667888899999999999999843 45557777


Q ss_pred             HHHHhCCCh
Q 008585          507 CLASLSPSK  515 (560)
Q Consensus       507 ~L~~L~~~~  515 (560)
                      +|.||....
T Consensus       595 ALrNLln~R  603 (2195)
T KOG2122|consen  595 ALRNLLNFR  603 (2195)
T ss_pred             HHHHHhcCC
Confidence            787776544

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.6e-13  Score=135.66  Aligned_cols=405  Identities=15%  Similarity=0.155  Sum_probs=299.1

Q ss_pred             hhhhHHhhhhhhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhh--hchHHHHHHHHccCCHHHHHHHHHHHHHHHh
Q 008585          106 QSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATT--HGNTRELLARLQIGHLEAKHKALDSLVEAMK  183 (560)
Q Consensus       106 ~s~~~~~~~~l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~--~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~  183 (560)
                      ..+.|.+.-++...+..-..+++....     .+.-..........+  +..|.-|+..|...+.+...-....|..|.-
T Consensus       259 k~e~dr~~kklk~~~~KQeqLLrva~y-----lLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI  333 (791)
T KOG1222|consen  259 KEEIDRLNKKLKTAIRKQEQLLRVAVY-----LLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI  333 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence            446666666666666655555554321     111111111112222  4567788889988887766666666666654


Q ss_pred             hChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008585          184 EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR  263 (560)
Q Consensus       184 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  263 (560)
                      - .+|+..+.+.|.|+.|+++....+++.+...+..|.+++.+...|..++..|.+|.+..+|.++..  ...|...|+.
T Consensus       334 f-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh  410 (791)
T KOG1222|consen  334 F-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYH  410 (791)
T ss_pred             h-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhh
Confidence            3 346667778899999999999999999999999999999999999999999999999999988654  3457889999


Q ss_pred             hhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh-hcCCchhHHHHHH
Q 008585          264 LSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAA  341 (560)
Q Consensus       264 La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL-~~~~~~~v~~~a~  341 (560)
                      ++.+++.+..+....+++.+++.+-+ .+.++-........|+|-+..+.+.+.+-.++..|++-. +..+.  .   -.
T Consensus       411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~--l---Lm  485 (791)
T KOG1222|consen  411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL--L---LM  485 (791)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch--H---HH
Confidence            99999999999999999999877644 344444444444569998888989999988888888764 33332  2   24


Q ss_pred             HHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhcc--ccHHHHHhCCcHHHHHHHHhcC--CH
Q 008585          342 ECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAG--SL  414 (560)
Q Consensus       342 ~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~--~~~~~l~~~~~i~~Lv~lL~~~--~~  414 (560)
                      ..+.|++.+....+..+++-  +..|...+..   ...-..+++.++|+..+  +....+.+...+|++-..|..+  ..
T Consensus       486 K~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~ed  563 (791)
T KOG1222|consen  486 KVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADED  563 (791)
T ss_pred             HHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccch
Confidence            56788888766555555542  3333444432   45667888888888873  5567777889999999999864  46


Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhcc
Q 008585          415 GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLL  492 (560)
Q Consensus       415 ~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL  492 (560)
                      +++.....+++.+++.......+..+|.++.|++++++.  +.+.......+...+..|...++.++++...-.+|+.++
T Consensus       564 dLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLM  643 (791)
T KOG1222|consen  564 DLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLM  643 (791)
T ss_pred             hhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            788888999999999999999999999999999999864  444555566666777778888888999888889999999


Q ss_pred             CCCCchhhHHHHHHHHHHhCC-ChhhHHHHHHcCh
Q 008585          493 DPSPQNTAKKYAVACLASLSP-SKKCKKLMISYGA  526 (560)
Q Consensus       493 ~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i~~~g~  526 (560)
                      ++.+. ++++.+=.+|--++. +++..++|..+.+
T Consensus       644 HDkN~-eiRkVCDn~LdIiae~d~EWAKrI~~EkF  677 (791)
T KOG1222|consen  644 HDKNA-EIRKVCDNALDIIAEHDKEWAKRIAGEKF  677 (791)
T ss_pred             hcccH-HHHHHHHHHHHHHHHhhHHHHHHHhhhhc
Confidence            99854 477777777777775 4578888876544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.58  E-value=2.4e-13  Score=130.20  Aligned_cols=192  Identities=20%  Similarity=0.234  Sum_probs=165.7

Q ss_pred             HhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh
Q 008585          192 VMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM  270 (560)
Q Consensus       192 i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~  270 (560)
                      +.+.+.++.|+.+|+. .+|.+++.+..++++.+.++.++..+.+.|+++.+..+|.++++.+++.|.++|.+++.+.++
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            3566778999999986 479999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585          271 ARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (560)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La  348 (560)
                      +..+-.  .++.+++...+  -+..+|..++++|.||+..++.+..+..  .++.++.++.+|+. .++.+++.+|.||+
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~-~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSE-KTKVQVLKVLVNLS  162 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCCh-HHHHHHHHHHHHhc
Confidence            887743  35655554433  3678999999999999988777777754  79999999999997 89999999999999


Q ss_pred             cCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc
Q 008585          349 ASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG  389 (560)
Q Consensus       349 ~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~  389 (560)
                      .+ +...+.++..+++..++.+++.   .+....++..+.|+..
T Consensus       163 ~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  163 EN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             cC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            85 5556778888899999999976   4567788888999865

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.58  E-value=9.6e-13  Score=128.66  Aligned_cols=302  Identities=11%  Similarity=0.084  Sum_probs=236.2

Q ss_pred             HhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHHHHHhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHH
Q 008585          192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQR  263 (560)
Q Consensus       192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~  263 (560)
                      -++.+.++.|.+..++++.++.++..++|+|++.+. +.|..+.+.|+-..++++|+..       +.+....++..|.|
T Consensus        83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N  162 (604)
T KOG4500|consen   83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN  162 (604)
T ss_pred             hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence            345678999999999999999999999999999876 4999999999988888888753       23455566778888


Q ss_pred             hhCC-hhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhhcCCchhHHH
Q 008585          264 LSMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLDCGILLGSKE  338 (560)
Q Consensus       264 La~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~  338 (560)
                      -..+ ++.+....+.|+++.|..++.-  .+............|+.+.  +.......+......+++++.+....+..+
T Consensus       163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e  242 (604)
T KOG4500|consen  163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE  242 (604)
T ss_pred             hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence            7765 6778889999999999888753  3445556666666777642  234556667888889999998765557899


Q ss_pred             HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-Cc--cHHHHHHHHH-------Hhhc-cccHHHHHhCC-cHHHHH
Q 008585          339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PL--PQESAVGALR-------NLVG-SVSQEVLISLG-FFPRLV  406 (560)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~--~~~~a~~~L~-------nla~-~~~~~~l~~~~-~i~~Lv  406 (560)
                      .+.+.|...+.+ +..+-.+.+.|.+..+..+++. +.  -...+...+.       -+.. .++.+.+...+ ++..++
T Consensus       243 M~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~  321 (604)
T KOG4500|consen  243 MIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLE  321 (604)
T ss_pred             HHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHH
Confidence            999999998875 5667778899999998888865 21  1222222222       2222 34545566665 899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCCChhhHHHhhh
Q 008585          407 HVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTLPQNCREVKRD  481 (560)
Q Consensus       407 ~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-----s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~  481 (560)
                      ..+++.+...+.....+|+|+++.++++..+.+.+.+..|++.+.     .++.+.+..++.||.+++.-.+|+..++. 
T Consensus       322 sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-  400 (604)
T KOG4500|consen  322 SWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-  400 (604)
T ss_pred             HHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-
Confidence            999999999999999999999999999999999999999999995     35677899999999999988899888774 


Q ss_pred             CCChHHHHhccCCC
Q 008585          482 DKSVPNLVQLLDPS  495 (560)
Q Consensus       482 ~~~v~~Lv~lL~~~  495 (560)
                      .|.++.++..++..
T Consensus       401 aGvteaIL~~lk~~  414 (604)
T KOG4500|consen  401 AGVTEAILLQLKLA  414 (604)
T ss_pred             cchHHHHHHHHHhc
Confidence            68888888888765

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=7e-13  Score=144.41  Aligned_cols=453  Identities=17%  Similarity=0.181  Sum_probs=291.6

Q ss_pred             chhhHHHHHHhcccccccccc-CCCCCCCchhHHHHHHHHHHHHHHHH----HHHHHh-cCCCCCCcchhhhhhHHhhhh
Q 008585           42 GRWKMIISKLEQIPSHLSDLS-SHPCFSKNALCREQLQAVSKTLKEAI----ELAELC-VKEKYEGKLRMQSDLDALSGK  115 (560)
Q Consensus        42 ~~~~~i~~k~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~~~c-~~~~~~~~~~~~s~~~~~~~~  115 (560)
                      -.=..||.|++++.+.+..-- .. .||      ++++.+.+++....    +.+-+- ..-.+.-....+.++|.+...
T Consensus        91 E~~~~vr~k~~dviAeia~~~l~e-~WP------ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~l  163 (1075)
T KOG2171|consen   91 ETEPSVRHKLADVIAEIARNDLPE-KWP------ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRL  163 (1075)
T ss_pred             ccchHHHHHHHHHHHHHHHhcccc-chH------HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHH
Confidence            344578999999999886544 22 598      89999888765322    111111 000111113445577777778


Q ss_pred             hhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhhhchHHHHHHHH----ccCCHHHHHHHHHHHHHHHhhChHHHHH
Q 008585          116 LDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARL----QIGHLEAKHKALDSLVEAMKEDEKNVLA  191 (560)
Q Consensus       116 l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~i~~Ll~~L----~~~~~~~~~~A~~~L~~L~~~~~~~~~~  191 (560)
                      |...+.|.+.-+|+..+..-.+.....+.........+..++.++..+    +.|+.+.-..++..|.+++...++..+.
T Consensus       164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~  243 (1075)
T KOG2171|consen  164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP  243 (1075)
T ss_pred             HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH
Confidence            888888777666654442211112222112222333455666666555    5677777788999999999888876554


Q ss_pred             HhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCc--hHH-HHHhCCCHHHHHHhhhcC----------------C
Q 008585          192 VMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS--CEN-WLVSEGVLPPLIRLVESG----------------S  250 (560)
Q Consensus       192 i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~--~~~-~l~~~g~i~~Lv~lL~~~----------------~  250 (560)
                      ... ..++..+.+.++.+  ..+|..|+.+|..+++..+  +|. .......++.++.++.+.                .
T Consensus       244 ~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~  322 (1075)
T KOG2171|consen  244 HLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDE  322 (1075)
T ss_pred             HHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccc
Confidence            443 45777777777654  8999999999999998854  221 112223556666665432                1


Q ss_pred             HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHh
Q 008585          251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLL  328 (560)
Q Consensus       251 ~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL  328 (560)
                      ......|..+|..++.+-..+..+  .-.++.+-.++++.++.-|++++.+|..++.  ++.+.|..  ..+++.+++.+
T Consensus       323 ~~~~~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l  398 (1075)
T KOG2171|consen  323 ETPYRAAEQALDRLALHLGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGL  398 (1075)
T ss_pred             cCcHHHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhc
Confidence            124556788888887763322211  1123667788889999999999999999886  23333333  56889999999


Q ss_pred             hcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhccccHHHH--HhCCcHH
Q 008585          329 DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVL--ISLGFFP  403 (560)
Q Consensus       329 ~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~  403 (560)
                      +++++ .||+.|+.++++++.+-..--+.-.+.-.++.|+..+++   +.++.+|..++-|+........+  .-.+++.
T Consensus       399 ~Dphp-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~  477 (1075)
T KOG2171|consen  399 NDPHP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME  477 (1075)
T ss_pred             CCCCH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99997 899999999999998544333445556677888888877   57889999999999873333333  2245566


Q ss_pred             HHH-HHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCC-HH---HHHHHHHHHHHhcCCChhhH
Q 008585          404 RLV-HVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKP-NS---VREVAAQAISSLVTLPQNCR  476 (560)
Q Consensus       404 ~Lv-~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~-~~---v~~~A~~aL~~L~~~~~~~~  476 (560)
                      +++ .+++++.+.+|+.++.+|+..+..  ..+.+++  .-.+|.|.+.++..+ .+   +|....+++.-++. .-++.
T Consensus       478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke  554 (1075)
T KOG2171|consen  478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKE  554 (1075)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-Hhhhh
Confidence            343 445567899999999999999854  4555555  456999999998655 33   56666677776652 22223


Q ss_pred             HHhhhCCChHHHHhccCCC------CchhhHHHHHHHHHHhCC
Q 008585          477 EVKRDDKSVPNLVQLLDPS------PQNTAKKYAVACLASLSP  513 (560)
Q Consensus       477 ~~~~~~~~v~~Lv~lL~~~------~~~~~~~~a~~~L~~L~~  513 (560)
                      +|...   ...+++++-..      +++..+.|....+.++|+
T Consensus       555 ~F~~~---a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~  594 (1075)
T KOG2171|consen  555 KFLPL---AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR  594 (1075)
T ss_pred             hhhHh---HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence            33322   12333332221      344578888998888874

>PRK09687 putative lyase; Provisional

Probab=99.53  E-value=1.4e-12  Score=127.83  Aligned_cols=253  Identities=18%  Similarity=0.152  Sum_probs=199.5

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      ..+..|+..|...+..++..|+..|..+-           +...++.+..+++++++.+|..|+++|+.|...+..    
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            34788899999999999999999987652           224577788899999999999999999999764432    


Q ss_pred             HhCCCHHHHHHh-hhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585          234 VSEGVLPPLIRL-VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (560)
Q Consensus       234 ~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (560)
                       ....++.|..+ +++.++.++..++.+|.++.......    ....+..+...+.++++.+|..++.+|.++..     
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----  157 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----  157 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence             12356777776 67789999999999999995432211    11133567777888899999999999976643     


Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS  390 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~  390 (560)
                           ..+++.|+.++.++++ .++..|+.+|+.+..+++..         ++.|+..+.+  +.++..|+.+|+.+-. 
T Consensus       158 -----~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~~~~---------~~~L~~~L~D~~~~VR~~A~~aLg~~~~-  221 (280)
T PRK09687        158 -----EAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDNPDI---------REAFVAMLQDKNEEIRIEAIIGLALRKD-  221 (280)
T ss_pred             -----HHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCCHHH---------HHHHHHHhcCCChHHHHHHHHHHHccCC-
Confidence                 3478999999999887 89999999999995444432         6778888876  6789999999988752 


Q ss_pred             ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHH
Q 008585          391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISS  467 (560)
Q Consensus       391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~  467 (560)
                              ..+++.|++.|++++  ++..++.+|+++...          ..+|.|.+++. ..+..++..|.++|..
T Consensus       222 --------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        222 --------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             --------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                    357999999999876  677899999998753          45899999997 7888999999998864

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=6e-12  Score=124.62  Aligned_cols=319  Identities=14%  Similarity=0.142  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh
Q 008585          213 REKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS  292 (560)
Q Consensus       213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~  292 (560)
                      ...|+..|.+++++-.....+...+.+..|++.|...+.+....+...|.+|+...+|+..+.+.|.+..|++++...+|
T Consensus       280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~  359 (791)
T KOG1222|consen  280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP  359 (791)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH
Confidence            34578899999999888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585          293 VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD  372 (560)
Q Consensus       293 ~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~  372 (560)
                      +++...+..|.|++.+.+++.+++..|.+|.+..++.++..   ...|+..|..++.+ +..+.++.....++.+.+.+-
T Consensus       360 dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~  435 (791)
T KOG1222|consen  360 DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVL  435 (791)
T ss_pred             HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987664   45577788888775 455777778888998888763


Q ss_pred             C---CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHhCChh-HHHHHHhcCCHHHH
Q 008585          373 G---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLL  446 (560)
Q Consensus       373 ~---~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~~La~~~~-~~~~i~~~g~i~~L  446 (560)
                      .   ..+....+..--|+|. ..+.+.+.+-.++..|++ .++..++-+    ...++|++.++. .+..+++  .+..|
T Consensus       436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdL  509 (791)
T KOG1222|consen  436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDL  509 (791)
T ss_pred             hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHH
Confidence            2   4555566666678887 456666666666777765 455666543    457888988755 4444433  46677


Q ss_pred             HHHHccCC-HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhCCChhhHHHHHHc
Q 008585          447 IKLLEAKP-NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPSKKCKKLMISY  524 (560)
Q Consensus       447 v~ll~s~~-~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~i~~~  524 (560)
                      ...++..+ +..-..+.+.|++|....-.-..+++....+|.+-+.|.++ ..+......+-.+..++.+..+..-+..+
T Consensus       510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a  589 (791)
T KOG1222|consen  510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA  589 (791)
T ss_pred             HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence            77776544 44567788888888877777788999999999999999887 44456777788888999999999999999


Q ss_pred             ChhHHHHHhhccCchhH
Q 008585          525 GAIGYLKKLSEMDIPGA  541 (560)
Q Consensus       525 g~i~~L~~L~~~~~~~a  541 (560)
                      |.++.|+.|++...++-
T Consensus       590 ~~i~tlieLL~a~QeDD  606 (791)
T KOG1222|consen  590 KLIDTLIELLQACQEDD  606 (791)
T ss_pred             ccHHHHHHHHHhhcccc
Confidence            99999999998876653

>PRK09687 putative lyase; Provisional

Probab=99.47  E-value=8.4e-12  Score=122.35  Aligned_cols=253  Identities=18%  Similarity=0.087  Sum_probs=195.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~  275 (560)
                      -.++.|..+|.+++..+|..|+.+|..+..          ..+++.+.++++++++.+|..++++|..|...+....   
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~---   89 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQD---   89 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchH---
Confidence            358899999999999999999999988763          2367888899999999999999999999965432211   


Q ss_pred             hCCChHHHHHH-hccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585          276 GHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (560)
Q Consensus       276 ~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~  354 (560)
                        ..++.|..+ ++++++.++..++.+|++++......    ...++..+...+.+++. .||..++.+|+++..  +. 
T Consensus        90 --~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~-~VR~~a~~aLg~~~~--~~-  159 (280)
T PRK09687         90 --NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKST-NVRFAVAFALSVIND--EA-  159 (280)
T ss_pred             --HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCH-HHHHHHHHHHhccCC--HH-
Confidence              233777766 67789999999999999996432111    12245667777777776 899999999987753  22 


Q ss_pred             HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh
Q 008585          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE  432 (560)
Q Consensus       355 ~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~  432 (560)
                              .++.|+.++++  +.++..|+.+|+.+... .      ...++.|+..|.+.+..|+..|+++|+++..   
T Consensus       160 --------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-~------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---  221 (280)
T PRK09687        160 --------AIPLLINLLKDPNGDVRNWAAFALNSNKYD-N------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD---  221 (280)
T ss_pred             --------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-C------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---
Confidence                    38889999976  67899999999998431 1      2368889999999999999999999999753   


Q ss_pred             HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHH
Q 008585          433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (560)
Q Consensus       433 ~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~  509 (560)
                             ..++|.|++.+.+++  ++..++.+|..+..           ...++.|.++++..++..++..+..+|.
T Consensus       222 -------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        222 -------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             -------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence                   256999999998765  67889999999842           1346889999986555567777776654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.43  E-value=1.5e-11  Score=117.91  Aligned_cols=190  Identities=16%  Similarity=0.199  Sum_probs=166.5

Q ss_pred             hHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      .++.|+..|+ +.++..+..++.++.+.+. .+.++..+.+.|+++.+..+|+.+++.+++.|+.+|.+++.+.+++..+
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I   91 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI   91 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence            4789999998 5679999999999999765 6778889999999999999999999999999999999999999887776


Q ss_pred             HhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585          234 VSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (560)
                      -.  .++.+++...+.  +..++..+.++|.+|+..++....+.  +.++.++.++.+++..+|..++.+|.||+.++..
T Consensus        92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~  167 (254)
T PF04826_consen   92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM  167 (254)
T ss_pred             HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence            43  577777755544  77899999999999998887777664  4799999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      .+.+...+++..++.+++.....++...++..+.||..
T Consensus       168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999987655889999999999965

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.43  E-value=1.2e-10  Score=118.85  Aligned_cols=317  Identities=15%  Similarity=0.132  Sum_probs=232.9

Q ss_pred             chHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-----CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 008585          154 GNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-----SNIAALVQLLTATSPRIREKTVTVICSLAESG  227 (560)
Q Consensus       154 ~~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-----g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~  227 (560)
                      .++..++..|. +...+.....+.-+.+++.+++.....+.+.     +...+++.+|..++.-++..++.+|..+....
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            44666677775 4556778888888888998888766666653     55788888999989999999999999997654


Q ss_pred             chH-HHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--ChHHHHHHHHHHH
Q 008585          228 SCE-NWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTLK  303 (560)
Q Consensus       228 ~~~-~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL~  303 (560)
                      ... ......-.++-+...+++. +...+..++.+|..|...++.+..+.+.++++.|+.+++..  +...+..++-++|
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            311 1000001233445555543 46678888999999999999999999999999999999863  4588899999999


Q ss_pred             HhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC------hhHHHHHHhCCCHHHHHHhccC----
Q 008585          304 NISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN------ENLRRSVVSEGGIRSLLAYLDG----  373 (560)
Q Consensus       304 nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~------~~~~~~i~~~g~l~~L~~ll~~----  373 (560)
                      -|+.+++....+.+.+.++.++++++....+.+.+-++.+|.|+...+      ......+++.|.++ +++.|..    
T Consensus       213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~  291 (429)
T cd00256         213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYD  291 (429)
T ss_pred             HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCC
Confidence            999988877778788999999999998776689999999999999843      12334556666544 4454432    


Q ss_pred             -Ccc-------HHHHHHHHHHhhc----------------c---------ccHHHHHhCC--cHHHHHHHHh-cCCHHHH
Q 008585          374 -PLP-------QESAVGALRNLVG----------------S---------VSQEVLISLG--FFPRLVHVLK-AGSLGAQ  417 (560)
Q Consensus       374 -~~~-------~~~a~~~L~nla~----------------~---------~~~~~l~~~~--~i~~Lv~lL~-~~~~~v~  417 (560)
                       +++       .+.--..+..++.                +         ++...+.+.+  .+..|+++|. +.++.+.
T Consensus       292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l  371 (429)
T cd00256         292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL  371 (429)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee
Confidence             221       1111111122221                1         1223334443  3788999995 5678888


Q ss_pred             HHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          418 QAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       418 ~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      ..||.=|+.++++ |..+..+.+.|+=..+++++.+++++||..|+.|+..|..+
T Consensus       372 aVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         372 AVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             ehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            8999999999965 88898888899999999999999999999999999988643

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.40  E-value=1e-10  Score=133.43  Aligned_cols=272  Identities=21%  Similarity=0.155  Sum_probs=206.0

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      .+..|+..|+..++.+|..|+..|..+.           ..+.++.|+.+|+++++.+|..|+.+|..+.....      
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------
Confidence            3567788888888899988888887753           23468889999999999999999999988854322      


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM  314 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~  314 (560)
                         ..+.+...|++.++.+|..++..|..+..           +-...++..|.++++.+|..|+.+|..+..       
T Consensus       685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~-------  743 (897)
T PRK13800        685 ---PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDD-------  743 (897)
T ss_pred             ---chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence               23577788888999999999999888742           123456788899999999999999987532       


Q ss_pred             HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcccc
Q 008585          315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVS  392 (560)
Q Consensus       315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~  392 (560)
                            .+.+..++.+++. .+|..++.+|+.+.....         ..++.|..++.+  +.++..|+.+|+++..+  
T Consensus       744 ------~~~l~~~l~D~~~-~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~--  805 (897)
T PRK13800        744 ------VESVAGAATDENR-EVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCP--  805 (897)
T ss_pred             ------cHHHHHHhcCCCH-HHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--
Confidence                  2446677888876 899999999998865322         126778888866  56888999999888642  


Q ss_pred             HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585          393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (560)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~  472 (560)
                            ...+..++..|.+.++.|+..|+.+|..+..          ...++.|+.++.+++..||..|+.+|..+. .+
T Consensus       806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~  868 (897)
T PRK13800        806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP-GD  868 (897)
T ss_pred             ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CC
Confidence                  1134668888999999999999999998763          245689999999999999999999999872 12


Q ss_pred             hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHH
Q 008585          473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (560)
Q Consensus       473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~  509 (560)
                      +.         ..+.|...+++. +..++..+..+|.
T Consensus       869 ~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~  895 (897)
T PRK13800        869 PA---------ARDALTTALTDS-DADVRAYARRALA  895 (897)
T ss_pred             HH---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence            22         235666777765 3457878877764

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=1.7e-09  Score=114.19  Aligned_cols=376  Identities=17%  Similarity=0.172  Sum_probs=266.4

Q ss_pred             hHHHHHHHHccC-CHHHHHHHHHHHHHHHh-hChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC-chH
Q 008585          155 NTRELLARLQIG-HLEAKHKALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESG-SCE  230 (560)
Q Consensus       155 ~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~-~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~-~~~  230 (560)
                      -+..|+.-|+.. ++..+.+|+..|++.+. .+++....+--.-.+|.|+.+|++. +.+++..|+++|.+|+..- ...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            477888888765 78889999998888764 4555444333345699999999986 5999999999999999864 478


Q ss_pred             HHHHhCCCHHHHHH-hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC--
Q 008585          231 NWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--  307 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--  307 (560)
                      ..+++.++||.|+. ++.-...++.+++..+|..|+...  ..++.+.|++...+..+..-+..+|+.|+.+-.|+|.  
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88899999999986 455578899999999999997643  3567899999999999998899999999999999985  


Q ss_pred             CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc---CChhHHHHHHhCCCHHHHHHhccC------CccHH
Q 008585          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG------PLPQE  378 (560)
Q Consensus       308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~  378 (560)
                      .++--..++|  ++|.|..+|...+. ...++++-|+..++.   +.+..-+.+...|.+....+++.-      ..+..
T Consensus       326 ~sd~f~~v~e--alPlL~~lLs~~D~-k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  326 RSDEFHFVME--ALPLLTPLLSYQDK-KPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             CCccchHHHH--HHHHHHHHHhhccc-hhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            4455556665  79999999998887 789999999999886   455666778888988888888743      23456


Q ss_pred             HHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC--------------HHHHHHHH---------------------
Q 008585          379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS--------------LGAQQAAA---------------------  421 (560)
Q Consensus       379 ~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~--------------~~v~~~A~---------------------  421 (560)
                      ..++.+..|+.  +-....+...++...|..+|...+              |.-+....                     
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~  482 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS  482 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence            67777777776  344555566666666666664311              10000000                     


Q ss_pred             -------------------------------HHHHHHh-----------------------CChhHHHHHHhcCCHHHHH
Q 008585          422 -------------------------------SALCRVC-----------------------TSAEMKKLVGEAGCTPLLI  447 (560)
Q Consensus       422 -------------------------------~aL~~La-----------------------~~~~~~~~i~~~g~i~~Lv  447 (560)
                                                     +.+..+-                       ..++..+.++. ..+|.|+
T Consensus       483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv  561 (1051)
T KOG0168|consen  483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV  561 (1051)
T ss_pred             hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence                                           1111000                       00111222211 2577788


Q ss_pred             HHHcc-CCHHHHHHHHHHHHHhc--CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-Ch-hhHHHHH
Q 008585          448 KLLEA-KPNSVREVAAQAISSLV--TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-SK-KCKKLMI  522 (560)
Q Consensus       448 ~ll~s-~~~~v~~~A~~aL~~L~--~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~-~~r~~i~  522 (560)
                      +...+ .++.||..++.||..+.  ...+-...++++...-..+-.+|.+.+...+. .++...--|.. -+ ..-..|.
T Consensus       562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlV-gALQvAEiLmeKlpd~F~~~F~  640 (1051)
T KOG0168|consen  562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLV-GALQVAEILMEKLPDTFSPSFR  640 (1051)
T ss_pred             HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEe-ehHHHHHHHHHHhHHHhhhhHh
Confidence            87764 67889999999999998  34455677777655557777888877544322 33433333332 22 3556788


Q ss_pred             HcChhHHHHHhhccC
Q 008585          523 SYGAIGYLKKLSEMD  537 (560)
Q Consensus       523 ~~g~i~~L~~L~~~~  537 (560)
                      .+|.+.....|+.-.
T Consensus       641 REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  641 REGVFHAVKQLSVDS  655 (1051)
T ss_pred             hhhHHHHHHHHhccC
Confidence            999999999998733

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.31  E-value=8.2e-10  Score=126.08  Aligned_cols=271  Identities=19%  Similarity=0.147  Sum_probs=208.2

Q ss_pred             hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHH
Q 008585          194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA  273 (560)
Q Consensus       194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~  273 (560)
                      +...++.|+..|+++++.+|..|+..|+.+..          .+.++.|++.|++++..+|..|+.+|..+....+    
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            33568899999999999999999999998752          3468999999999999999999999998853221    


Q ss_pred             HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                           ..+.|...|.++++.+|..++.+|..+...           -...++..+.+++. .+|..|+.+|..+-.    
T Consensus       685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~----  743 (897)
T PRK13800        685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDH-RVRIEAVRALVSVDD----  743 (897)
T ss_pred             -----chHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCH-HHHHHHHHHHhcccC----
Confidence                 125677888899999999999999887531           23457778888886 899999999987621    


Q ss_pred             HHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCCh
Q 008585          354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA  431 (560)
Q Consensus       354 ~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~  431 (560)
                                .+.|...+.+  +.+|..+..+|..+....       ...++.|..+++++++.|+..|+.+|+++...+
T Consensus       744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~  806 (897)
T PRK13800        744 ----------VESVAGAATDENREVRIAVAKGLATLGAGG-------APAGDAVRALTGDPDPLVRAAALAALAELGCPP  806 (897)
T ss_pred             ----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Confidence                      2335566765  678999999999886421       123788999999999999999999999986541


Q ss_pred             hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHh
Q 008585          432 EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL  511 (560)
Q Consensus       432 ~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L  511 (560)
                               ..++.++..+.+.++.+|..|+.+|..+.           ....++.|+.+|++.+ ..++..++.+|..+
T Consensus       807 ---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~~-~~VR~~A~~aL~~~  865 (897)
T PRK13800        807 ---------DDVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVPALVEALTDPH-LDVRKAAVLALTRW  865 (897)
T ss_pred             ---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCCC-HHHHHHHHHHHhcc
Confidence                     22466888899999999999999998773           1234588899998764 46899999999887


Q ss_pred             CCChhhHHHHHHcChhHHHHHhhccCchhHHHHHH
Q 008585          512 SPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLE  546 (560)
Q Consensus       512 ~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~  546 (560)
                      ..++         ...+.|.+.++-+++++++.+.
T Consensus       866 ~~~~---------~a~~~L~~al~D~d~~Vr~~A~  891 (897)
T PRK13800        866 PGDP---------AARDALTTALTDSDADVRAYAR  891 (897)
T ss_pred             CCCH---------HHHHHHHHHHhCCCHHHHHHHH
Confidence            4333         3456677777767776665544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.30  E-value=7.4e-11  Score=100.73  Aligned_cols=117  Identities=27%  Similarity=0.414  Sum_probs=107.7

Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-  309 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-  309 (560)
                      .+++.|+++.++++|.++++.++..++++|.+++.+ ++....+.+.|+++.+++++.++++.++..++++|+|++.++ 
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467889999999999999999999999999999987 788888999999999999999999999999999999999865 


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      +.+..+.+.|+++.+++++.+++. .+++.++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence            677778889999999999998876 899999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.28  E-value=9.7e-11  Score=99.97  Aligned_cols=116  Identities=22%  Similarity=0.352  Sum_probs=106.9

Q ss_pred             HhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-h
Q 008585          192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-E  269 (560)
Q Consensus       192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~  269 (560)
                      +++.|+++.++++|+++++.++..++.+|.+++.+ ++.+..+++.|+++.++++|.++++.++..++++|++|+.+. +
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            56789999999999999999999999999999998 558888899999999999999999999999999999999875 5


Q ss_pred             hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          270 MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       270 ~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                      ....+...|+++.|++++.+.+..++..++++|+|++.
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            56677889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.24  E-value=2.3e-09  Score=110.81  Aligned_cols=358  Identities=15%  Similarity=0.081  Sum_probs=223.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCc-hHHHH
Q 008585          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS-CENWL  233 (560)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~-~~~~l  233 (560)
                      ..++.++...+++....|.....+++.+.+++...++..|.++.|+.++...+  ++.+...+.++..+...++ ....+
T Consensus        12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            35667778889999999999999998877777777889999999999998765  6666666667777765554 78888


Q ss_pred             HhCCCHHHHHHhhhcCC-HHHHHHHHHHHHHhhCChhhHH---HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585          234 VSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMSAEMAR---AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~---~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (560)
                      .+.+.++.++++|.+.+ ..+++...+++..+....+.+.   .......++.+..+...+.......-+....+++..+
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence            89999999999999988 7899999999999965433221   2222233344433333222233333333333444444


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCc--------------------------------------------------hhHHHH
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGIL--------------------------------------------------LGSKEY  339 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~--------------------------------------------------~~v~~~  339 (560)
                      +.+..+.+.|+.+.+.-++..-+.                                                  ...+..
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            444444444433333333222111                                                  023334


Q ss_pred             HHHHHHHHccCChh----HHHH-HHhCC----------------C------------------------------HHHHH
Q 008585          340 AAECLQNLTASNEN----LRRS-VVSEG----------------G------------------------------IRSLL  368 (560)
Q Consensus       340 a~~~L~~La~~~~~----~~~~-i~~~g----------------~------------------------------l~~L~  368 (560)
                      ++.++.++...+.+    .+.. ..+.|                +                              ++...
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence            44444444332200    0000 00000                0                              00000


Q ss_pred             Hhcc---C---------------------------------------------------CccHHHHHHHHHHhhc--ccc
Q 008585          369 AYLD---G---------------------------------------------------PLPQESAVGALRNLVG--SVS  392 (560)
Q Consensus       369 ~ll~---~---------------------------------------------------~~~~~~a~~~L~nla~--~~~  392 (560)
                      +++.   +                                                   .+....++-++.++++  ..-
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            0000   0                                                   0011122223333332  011


Q ss_pred             HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      +..+....++.+|++++..++..++..+..+|+|+.- ....+..+...|+|+.+..++.+.++.+|..+.++|.++.-+
T Consensus       412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~  491 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN  491 (678)
T ss_pred             HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence            1112345679999999988999999999999999994 478899999999999999999999999999999999999966


Q ss_pred             ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585          472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (560)
Q Consensus       472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~  514 (560)
                      ..+...+.-..+.-...+-.+-+.++..+++.++..+.||+-+
T Consensus       492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            6554444434455555554444444557999999999999865

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.21  E-value=9.1e-09  Score=111.68  Aligned_cols=322  Identities=18%  Similarity=0.174  Sum_probs=228.9

Q ss_pred             HHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhC
Q 008585          159 LLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSE  236 (560)
Q Consensus       159 Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~  236 (560)
                      +-..+...  +...+.+++..|..+...+...     . -+...+++++.+.+...+..+--++..+...++..-.+   
T Consensus         9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~-----~-~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l---   79 (526)
T PF01602_consen    9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDI-----S-FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL---   79 (526)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------G-STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH---
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCC-----c-hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH---
Confidence            33344444  7778888888888876544422     1 56888889999889999999988888888776542222   


Q ss_pred             CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHH
Q 008585          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQML  315 (560)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i  315 (560)
                       ++..+.+=|.++++.++..|.+++.++. +++....+     ++.+..++.+++|.+|..|+.++..+.. +++..   
T Consensus        80 -~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---  149 (526)
T PF01602_consen   80 -IINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---  149 (526)
T ss_dssp             -HHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---
T ss_pred             -HHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---
Confidence             4677778888999999999999999987 45555555     3889999999999999999999999974 33321   


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccH
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQ  393 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~  393 (560)
                      ... .++.+.+++.+.+. .++..|+.++..+ ..++.....+ -...+..|.+++..  |..+...++++..++.....
T Consensus       150 ~~~-~~~~l~~lL~d~~~-~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~  225 (526)
T PF01602_consen  150 EDE-LIPKLKQLLSDKDP-SVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE  225 (526)
T ss_dssp             HGG-HHHHHHHHTTHSSH-HHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred             HHH-HHHHHhhhccCCcc-hhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence            122 58899999988886 8999999999999 3333221101 01123444444433  56788899999988872221


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh
Q 008585          394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ  473 (560)
Q Consensus       394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~  473 (560)
                      .. ....+++.+..++++.++.|...++.++..+...+...     ..+++.|++++.++++++|..++..|..++... 
T Consensus       226 ~~-~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-  298 (526)
T PF01602_consen  226 DA-DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELL-----QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-  298 (526)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-
T ss_pred             hh-hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHH-----HhhHHHHHHHhhcccchhehhHHHHHHHhhccc-
Confidence            11 01457899999999999999999999999998776522     345899999999999999999999999998554 


Q ss_pred             hhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585          474 NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       474 ~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                        ...+.   .....+..+...++..++..++.++..++...
T Consensus       299 --~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~  335 (526)
T PF01602_consen  299 --PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANES  335 (526)
T ss_dssp             --HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred             --chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence              22222   12333334443445568999999999998644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=1.4e-07  Score=99.41  Aligned_cols=324  Identities=17%  Similarity=0.176  Sum_probs=243.0

Q ss_pred             hhchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585          152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~  228 (560)
                      ....|+.|+.++.+.. .+.|+.|+..|..+++   +++.. +...|+++|++.|..+  |+++...++.++..+..+++
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd   95 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD   95 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence            3457999999997665 6889999999999976   34443 4557899999999764  69999999999999977552


Q ss_pred             -------hH----------H-HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhhHHHHH-hCCChHHHHHHh
Q 008585          229 -------CE----------N-WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIV-GHGGVRPLIEIC  287 (560)
Q Consensus       229 -------~~----------~-~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~l~-~~g~i~~Lv~ll  287 (560)
                             .+          + .+...+.|..++..+...+..+|.++...+.++-..  .+.+..+. ..-+|..++.+|
T Consensus        96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence                   11          1 233567899999999999999999999999999554  44555444 578999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCC--c-hhHHHHHHHHHHHHccCChhHHHHHHhCCC
Q 008585          288 QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGI--L-LGSKEYAAECLQNLTASNENLRRSVVSEGG  363 (560)
Q Consensus       288 ~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~--~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~  363 (560)
                      ++....+|..+...|..|..+. .+++.++-++++..|+.+++...  + .-|.+-|+..|-||-..+..++..+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            9999999999999999999754 56666666999999999998532  1 147889999999999999999888888899


Q ss_pred             HHHHHHhccC----C-c-----c-----HHHHHHHHHHhhcc--------ccHHHHHhCCcHHHHHHHHhcC--CHHHHH
Q 008585          364 IRSLLAYLDG----P-L-----P-----QESAVGALRNLVGS--------VSQEVLISLGFFPRLVHVLKAG--SLGAQQ  418 (560)
Q Consensus       364 l~~L~~ll~~----~-~-----~-----~~~a~~~L~nla~~--------~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~  418 (560)
                      ++.|.++|.-    . .     .     ...++.+++.+..+        .++..+.+.+++..|..++-+.  ..+++.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988742    1 1     1     23567777777762        2345778899999999988776  368999


Q ss_pred             HHHHHHHHHhCC-hhHHHHHHhcC------CHHH----HHHHHcc-CCHHHHHHHHHHHHHhcC-CChhhHHHh
Q 008585          419 AAASALCRVCTS-AEMKKLVGEAG------CTPL----LIKLLEA-KPNSVREVAAQAISSLVT-LPQNCREVK  479 (560)
Q Consensus       419 ~A~~aL~~La~~-~~~~~~i~~~g------~i~~----Lv~ll~s-~~~~v~~~A~~aL~~L~~-~~~~~~~~~  479 (560)
                      .+..++.++.++ ..++..+.+..      -.+.    ++.+..+ .....|..+..++..+.. +....++++
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l  409 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL  409 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence            999999999966 55666665431      1222    2223333 455688888888777664 444455544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.13  E-value=3.5e-09  Score=114.88  Aligned_cols=326  Identities=19%  Similarity=0.203  Sum_probs=229.7

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH-
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-  230 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~-  230 (560)
                      ....++.+...+.+.++.+|..|+.++..+...+|+..   ... .++.+.++|++.++.++..|+.++..+ ..++.. 
T Consensus       112 ~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~  186 (526)
T PF01602_consen  112 AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSY  186 (526)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHH
T ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchh
Confidence            35557777788889999999999999999998777432   222 588899999888999999999999999 222211 


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (560)
                      ..+ -...+..|.+++...++..+.....++..++.. +.....   ...++.+..++++.++.+...++.++.++...+
T Consensus       187 ~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~  262 (526)
T PF01602_consen  187 KSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP  262 (526)
T ss_dssp             TTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred             hhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch
Confidence            011 112345555566778999999999999988764 333311   234588888888888999999999999988765


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc---CCccHHHHHHHHHH
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD---GPLPQESAVGALRN  386 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~---~~~~~~~a~~~L~n  386 (560)
                      .     .-..+++.+..++.+.+. .++..++.+|..++..++   ..+ .  .....+..+.   ++.++..++..|..
T Consensus       263 ~-----~~~~~~~~L~~lL~s~~~-nvr~~~L~~L~~l~~~~~---~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~  330 (526)
T PF01602_consen  263 E-----LLQKAINPLIKLLSSSDP-NVRYIALDSLSQLAQSNP---PAV-F--NQSLILFFLLYDDDPSIRKKALDLLYK  330 (526)
T ss_dssp             H-----HHHHHHHHHHHHHTSSSH-HHHHHHHHHHHHHCCHCH---HHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred             H-----HHHhhHHHHHHHhhcccc-hhehhHHHHHHHhhcccc---hhh-h--hhhhhhheecCCCChhHHHHHHHHHhh
Confidence            5     334578899999997775 799999999999998652   122 2  2222233333   35688999999999


Q ss_pred             hhccccHHHHHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 008585          387 LVGSVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA  464 (560)
Q Consensus       387 la~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~a  464 (560)
                      ++.+.+...     +++.|...+. ..++.++..++..++.++.. +.....     +++.+++++...+..+...+...
T Consensus       331 l~~~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~  400 (526)
T PF01602_consen  331 LANESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYVSNEIINV  400 (526)
T ss_dssp             H--HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGCHCHHHHH
T ss_pred             cccccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccccchHHHH
Confidence            997544433     5888888884 45888999999999999843 333333     37788888887777778888888


Q ss_pred             HHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585          465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (560)
Q Consensus       465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~  513 (560)
                      +.++....++.+..     .+..++..+.+-..+..+..++.+++..+.
T Consensus       401 i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~  444 (526)
T PF01602_consen  401 IRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGE  444 (526)
T ss_dssp             HHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred             HHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence            88887544443332     257778887775555567777777776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.3e-07  Score=99.58  Aligned_cols=321  Identities=15%  Similarity=0.161  Sum_probs=236.1

Q ss_pred             CHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChh----
Q 008585          197 NIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAE----  269 (560)
Q Consensus       197 ~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~----  269 (560)
                      .|+.|+.-+.+.. .+-|..|+..|-.+++  .+|..+... +++++++.|+.+  +++...++..++..+..+++    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            4666766665554 7889999999998876  366666555 589999999986  88899999999999976542    


Q ss_pred             ---hH----------HHHH-hCCChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHh-cCcHHHHHHHhhcCC
Q 008585          270 ---MA----------RAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE-EGIVSVMIKLLDCGI  332 (560)
Q Consensus       270 ---~~----------~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e-~g~v~~L~~lL~~~~  332 (560)
                         ..          ..|. ..+.|..|+..+...|-.+|..+...|.++-.  ..+.+..+.. .-+|..++.+|.+..
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr  179 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR  179 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence               11          2222 36788899999998899999999999999854  5588888776 778999999999988


Q ss_pred             chhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHH
Q 008585          333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPR  404 (560)
Q Consensus       333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~  404 (560)
                      . .+|..++-.|+.++.+++..++.+.=.++...|+.+++.      .-+.+-|+..|-|+-.  ..++..+.+.+.|++
T Consensus       180 E-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r  258 (970)
T KOG0946|consen  180 E-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR  258 (970)
T ss_pred             h-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence            6 799999999999999999998888889999999999964      2468899999999998  477888889999999


Q ss_pred             HHHHHhc---CCHH--------H--HHHHHHHHHHHhCC-------hhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHH
Q 008585          405 LVHVLKA---GSLG--------A--QQAAASALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAA  462 (560)
Q Consensus       405 Lv~lL~~---~~~~--------v--~~~A~~aL~~La~~-------~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~  462 (560)
                      |.++|..   ++.+        |  ...++.++..+...       ..+++.+...+++..|+.++.+.  ..+++..+.
T Consensus       259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi  338 (970)
T KOG0946|consen  259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI  338 (970)
T ss_pred             HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence            9988853   2311        1  13455566666533       23567888999999999999765  466888898


Q ss_pred             HHHHHhcCC-ChhhHHHhhh----CC-----ChHHHHhccCCCCchhhHHHHHHHHHHhCC-ChhhHHHH
Q 008585          463 QAISSLVTL-PQNCREVKRD----DK-----SVPNLVQLLDPSPQNTAKKYAVACLASLSP-SKKCKKLM  521 (560)
Q Consensus       463 ~aL~~L~~~-~~~~~~~~~~----~~-----~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i  521 (560)
                      .++++...+ ..|...|..-    ..     .+-.|+.+..+..+...+..+..++..... +.+.+..+
T Consensus       339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~  408 (970)
T KOG0946|consen  339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF  408 (970)
T ss_pred             HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence            999988844 4454444331    11     122333444444333466666667665554 33444444

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.10  E-value=3.9e-08  Score=100.56  Aligned_cols=272  Identities=11%  Similarity=0.085  Sum_probs=196.0

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      ...++..|+.++.-....|+..|..++..++.+.......-..+.|...|+++ +...+..++.+|..|...+++|..+.
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            45566677888888899999999998865443211111111344566666654 47888899999999999999999999


Q ss_pred             hCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCc--
Q 008585          235 SEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVP--  309 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~--  309 (560)
                      +.++++.|+.+|+..  +...+.+++-|++-|+.+++....+...+.++.|+++++. ....+.+.++.+|.|+...+  
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~  262 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD  262 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence            999999999999874  5678899999999999998887778789999999999986 56678899999999997632  


Q ss_pred             -----hhHHHHHhcCcHHHHHHHhhc--CCchhHHH-------HHHHHHHHHccC-------------------Chh---
Q 008585          310 -----EVRQMLAEEGIVSVMIKLLDC--GILLGSKE-------YAAECLQNLTAS-------------------NEN---  353 (560)
Q Consensus       310 -----~~~~~i~e~g~v~~L~~lL~~--~~~~~v~~-------~a~~~L~~La~~-------------------~~~---  353 (560)
                           .....+++.|..+.+-.+-..  .++ ++.+       .--..+..+++-                   ++.   
T Consensus       263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De-dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~  341 (429)
T cd00256         263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDE-DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR  341 (429)
T ss_pred             cchhhhHHHHHHHcChHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence                 345566777776655444432  121 2221       111222233321                   111   


Q ss_pred             -HHHHHHhCC--CHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585          354 -LRRSVVSEG--GIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (560)
Q Consensus       354 -~~~~i~~~g--~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (560)
                       +...+-+.+  .+..|+++++.   +.+...|+.=|+.+++  |.++..+.+.|+=..++.+|.++|++|+.+|..++.
T Consensus       342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ  421 (429)
T cd00256         342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ  421 (429)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence             111222222  36778888842   6677888899999998  678888888899999999999999999999999998


Q ss_pred             HHh
Q 008585          426 RVC  428 (560)
Q Consensus       426 ~La  428 (560)
                      .|-
T Consensus       422 klm  424 (429)
T cd00256         422 KLM  424 (429)
T ss_pred             HHH
Confidence            763

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.09  E-value=3e-09  Score=106.92  Aligned_cols=212  Identities=20%  Similarity=0.227  Sum_probs=158.5

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhh------CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG------RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~------~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      .++..+ +.+.+.....+..+.+++.+++.....+..      .....+++++++++|..++..|+.+|..+....+.+.
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~  140 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS  140 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence            455555 567888889999999999888866555543      1257889999999999999999999999988776444


Q ss_pred             HHHhCCCHHHHHHhhhcC----CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh-----cc--CChHHHHHHHH
Q 008585          232 WLVSEGVLPPLIRLVESG----STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-----QT--GDSVSQAAAAC  300 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll-----~~--~~~~~~~~a~~  300 (560)
                      .-...+.++.+++.+++.    +...+..++.+|.+|...++.+..+.+.++++.++.++     .+  .+..++..++.
T Consensus       141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll  220 (312)
T PF03224_consen  141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL  220 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence            433355678888888763    45567899999999999999999999999999999999     22  34577899999


Q ss_pred             HHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh-HHHHHHhCCCHHHHHHh
Q 008585          301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-LRRSVVSEGGIRSLLAY  370 (560)
Q Consensus       301 aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~-~~~~i~~~g~l~~L~~l  370 (560)
                      ++|.|+.+++....+...+.++.++++++....+.+.+-++.+|.|+...++. +...++..|+++.+-.+
T Consensus       221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L  291 (312)
T PF03224_consen  221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL  291 (312)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence            99999999999999999999999999999877768999999999999986653 55566665554444333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.08  E-value=5.8e-08  Score=95.91  Aligned_cols=317  Identities=17%  Similarity=0.132  Sum_probs=229.6

Q ss_pred             chHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhh------CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 008585          154 GNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMG------RSNIAALVQLLTATSPRIREKTVTVICSLAES  226 (560)
Q Consensus       154 ~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~------~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (560)
                      ..+..++..+.. ..++.....+.-+-+++.++......+..      .-.-.+.+.+|...+.-+.+.+.++++.++..
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence            446666777653 44566777777888888766644333321      22367788999999999999999999999887


Q ss_pred             CchHHHHHhCC-CHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHH
Q 008585          227 GSCENWLVSEG-VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTL  302 (560)
Q Consensus       227 ~~~~~~l~~~g-~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL  302 (560)
                      ..++-...+-. ....|-..+++ .++.....+++||..+...++.+..++..+|+..++..+.+  .+-.++...+.++
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            65332211111 12334445555 57777888999999999999999999999999999999943  4668899999999


Q ss_pred             HHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh------hHHHHHHhCCCHHHHHHhccC---
Q 008585          303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE------NLRRSVVSEGGIRSLLAYLDG---  373 (560)
Q Consensus       303 ~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~------~~~~~i~~~g~l~~L~~ll~~---  373 (560)
                      |-|+.++...+.+...+.++.+.+++++.....|.+-++.++.|+....+      .....++..+ ++.-++.|+.   
T Consensus       225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rky  303 (442)
T KOG2759|consen  225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKY  303 (442)
T ss_pred             HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCC
Confidence            99999999998887789999999999987766899999999999998663      2223334444 4444444422   


Q ss_pred             --Ccc-------H---HHHHHHHHHh------------hc-c---------ccHHHHHhC--CcHHHHHHHHhcC-CHHH
Q 008585          374 --PLP-------Q---ESAVGALRNL------------VG-S---------VSQEVLISL--GFFPRLVHVLKAG-SLGA  416 (560)
Q Consensus       374 --~~~-------~---~~a~~~L~nl------------a~-~---------~~~~~l~~~--~~i~~Lv~lL~~~-~~~v  416 (560)
                        ++.       +   .....-|..+            .. |         ++...+.+.  ..+..|+++|+.. +|.+
T Consensus       304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence              221       1   1222222222            11 1         122333333  3488899999875 5888


Q ss_pred             HHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          417 QQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       417 ~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      -..|+.=|+...++ |+.+..+.+.|+=+.+++++.+++++||..|+.|+..|..+
T Consensus       384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            88999999999965 99999999999999999999999999999999999888643

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=5.4e-08  Score=92.74  Aligned_cols=335  Identities=15%  Similarity=0.118  Sum_probs=232.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-----hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM  270 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~  270 (560)
                      ...+.|..-|.+++..++..++..++.+.++.+     ....+++.|.++.++..+..++.++...|...+.+++..++.
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa  161 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA  161 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence            355666667788888999999999999988765     234456889999999999999999999999999999999998


Q ss_pred             HHHHHhCCChHHH--HHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585          271 ARAIVGHGGVRPL--IEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL  347 (560)
Q Consensus       271 ~~~l~~~g~i~~L--v~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L  347 (560)
                      ...++.......+  ..+-...+.-.|......+..+.+ .++.......+|.+..+..-++...+.-++.++++....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            8888877666553  223233455677778888888865 6688888888999998888887644436889999999999


Q ss_pred             ccCChhHHHHHHhCCCHHHHHHhccC--Cc--cHHHHHH----HHHHhhc-cccHHHHHhC--CcHHHHHHHHhcCCHHH
Q 008585          348 TASNENLRRSVVSEGGIRSLLAYLDG--PL--PQESAVG----ALRNLVG-SVSQEVLISL--GFFPRLVHVLKAGSLGA  416 (560)
Q Consensus       348 a~~~~~~~~~i~~~g~l~~L~~ll~~--~~--~~~~a~~----~L~nla~-~~~~~~l~~~--~~i~~Lv~lL~~~~~~v  416 (560)
                      +.. +.-++.+.+.|.++.+..++..  .+  -...++.    ++++.+. ....+.+.+.  -+++..+.++...|+..
T Consensus       242 aet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda  320 (524)
T KOG4413|consen  242 AET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA  320 (524)
T ss_pred             HHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence            985 3447888899999999999965  22  2232333    3333332 2233333222  34666677888899999


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHhcCC--HHHHHHHHcc-CCHHHHHHHHHHHHHhcC---CChhhHHH----------hh
Q 008585          417 QQAAASALCRVCTSAEMKKLVGEAGC--TPLLIKLLEA-KPNSVREVAAQAISSLVT---LPQNCREV----------KR  480 (560)
Q Consensus       417 ~~~A~~aL~~La~~~~~~~~i~~~g~--i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~---~~~~~~~~----------~~  480 (560)
                      +..|..+++.|..+.+..+.+...|-  ..+++.-... ....-++.+..+|.+++.   -++++..-          +.
T Consensus       321 ieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif  400 (524)
T KOG4413|consen  321 IEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF  400 (524)
T ss_pred             HHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence            99999999999999998888877762  2333322222 223345777788888873   23332111          00


Q ss_pred             h-----C--CChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH-HHHHcChhHHHHH
Q 008585          481 D-----D--KSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK-LMISYGAIGYLKK  532 (560)
Q Consensus       481 ~-----~--~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~-~i~~~g~i~~L~~  532 (560)
                      +     .  .-.......++. |.++.+..++..+..++..|=+.+ .+.+.|++++..+
T Consensus       401 daaaqstkldPleLFlgilqQ-pfpEihcAalktfTAiaaqPWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  401 DAAAQSTKLDPLELFLGILQQ-PFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHhhccCCChHHHHHHHHcC-CChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence            0     0  011112223332 456789999999999999995554 5557788877654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=3.7e-08  Score=101.78  Aligned_cols=330  Identities=14%  Similarity=0.104  Sum_probs=212.8

Q ss_pred             hhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 008585          150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC  229 (560)
Q Consensus       150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~  229 (560)
                      .+....++.++...+..++..|..|+..+..+.-........-++ ..++.+..+-...++++|.+.+.++..|.+....
T Consensus       170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d  248 (885)
T KOG2023|consen  170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD  248 (885)
T ss_pred             CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence            346778999999999999999999999988877544433222222 3466677777778899999999999999875442


Q ss_pred             HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh--CCChHHHHHH----------hcc-C------
Q 008585          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEI----------CQT-G------  290 (560)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~--~g~i~~Lv~l----------l~~-~------  290 (560)
                      |-.=-=.+++..+++.-++.+..+...||.....++..+..+..+..  ...+|.|+.-          +++ .      
T Consensus       249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp  328 (885)
T KOG2023|consen  249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP  328 (885)
T ss_pred             hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence            21111124677777777888899999999999999998865554432  2344444422          220 0      


Q ss_pred             ---------------------------------------ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh--
Q 008585          291 ---------------------------------------DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD--  329 (560)
Q Consensus       291 ---------------------------------------~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~--  329 (560)
                                                             ++.+|+..+.+|--|+       .+.....++.++.+++  
T Consensus       329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~  401 (885)
T KOG2023|consen  329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEH  401 (885)
T ss_pred             chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHH
Confidence                                                   0345555555553333       2333445666666655  


Q ss_pred             --cCCchhHHHHHHHHHHHHccCChhHHHHHHhC--CCHHHHHHhccC--CccHHHHHHHHHHhhc---cccHHHHHhCC
Q 008585          330 --CGILLGSKEYAAECLQNLTASNENLRRSVVSE--GGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQEVLISLG  400 (560)
Q Consensus       330 --~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~--g~l~~L~~ll~~--~~~~~~a~~~L~nla~---~~~~~~l~~~~  400 (560)
                        +.+. .+|+.+.-+|+.++.   ++.+-++..  ..++.++++|++  +-+|...+|.|+..+.   ...+.... ..
T Consensus       402 L~~~~W-~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~p  476 (885)
T KOG2023|consen  402 LSSEEW-KVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KP  476 (885)
T ss_pred             cCcchh-hhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HH
Confidence              5555 799999999999985   333333332  257778888877  7789999999999987   22232221 12


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCChhh
Q 008585          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE---AKPNSVREVAAQAISSLVTLPQNC  475 (560)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~---s~~~~v~~~A~~aL~~L~~~~~~~  475 (560)
                      ++..|++.+-.++..||+.|+.++..+-..  ++....+  .-.+..|+..+.   .++--+-.-|.++|+.=+.+.-|.
T Consensus       477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l--~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~  554 (885)
T KOG2023|consen  477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL--EYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK  554 (885)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc
Confidence            344455555568899999999999988643  2222222  112334444442   355556677888888877777776


Q ss_pred             HHHhhhCCChHHHH---hccCCCC
Q 008585          476 REVKRDDKSVPNLV---QLLDPSP  496 (560)
Q Consensus       476 ~~~~~~~~~v~~Lv---~lL~~~~  496 (560)
                      ..+++  ..+++|+   .+|.+++
T Consensus       555 ~~Yiq--iLmPPLi~KW~~lsd~D  576 (885)
T KOG2023|consen  555 PAYIQ--ILMPPLIEKWELLSDSD  576 (885)
T ss_pred             HHHHH--HhccHHHHHHHhcCccc
Confidence            66665  4557766   4555554

>PTZ00429 beta-adaptin; Provisional

Probab=99.03  E-value=6.7e-07  Score=98.37  Aligned_cols=357  Identities=13%  Similarity=0.117  Sum_probs=237.6

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      ..+.++-..|++.+...+.+++..+......+.+..      ...+..++++.+++.+++...--.+.+.+...+....+
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL  105 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL  105 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH
Confidence            346677788888888889999988877764333211      24556777888999999999988888888754322111


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHH
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (560)
                          ++..+.+=+++.++.+|..|.++++++-. ++....+     ++.+.+.+.+.+|-+|+.|+.++.++-....  .
T Consensus       106 ----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--e  173 (746)
T PTZ00429        106 ----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVLEYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--Q  173 (746)
T ss_pred             ----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--c
Confidence                47788888888999999999999999854 3333333     2677788889999999999999999865221  2


Q ss_pred             HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccc
Q 008585          314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSV  391 (560)
Q Consensus       314 ~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~  391 (560)
                      .+.+.+.++.+.+++.+.+. .|..+|+.+|..+...++..  .-...+.+..++..+.+  +..|...+.+|.... +.
T Consensus       174 lv~~~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~-P~  249 (746)
T PTZ00429        174 LFYQQDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR-PS  249 (746)
T ss_pred             cccccchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CC
Confidence            34456788899999988887 89999999999998755431  11223345666666653  566777777764432 22


Q ss_pred             cHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       392 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ....  ...++..+...|++.++.|...|+.++.++...  ++..+.+.. ...++|+.++ +.++++|..++..+..+.
T Consensus       250 ~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        250 DKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL  325 (746)
T ss_pred             CcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence            2221  135688888889999999999999999999854  333332211 2236677764 567889999998888876


Q ss_pred             CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHH-hhccCchhHHHHHHHH
Q 008585          470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKK-LSEMDIPGARKLLERL  548 (560)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~-L~~~~~~~akkl~~~l  548 (560)
                      ...+   .++..  .+....-..++  +..++...+.+|..|+....... ++     ..|.. ..+.+.+-+++.++.+
T Consensus       326 ~~~P---~lf~~--~~~~Ff~~~~D--p~yIK~~KLeIL~~Lane~Nv~~-IL-----~EL~eYa~d~D~ef~r~aIrAI  392 (746)
T PTZ00429        326 VIFP---NLLRT--NLDSFYVRYSD--PPFVKLEKLRLLLKLVTPSVAPE-IL-----KELAEYASGVDMVFVVEVVRAI  392 (746)
T ss_pred             HHCH---HHHHH--HHHhhhcccCC--cHHHHHHHHHHHHHHcCcccHHH-HH-----HHHHHHhhcCCHHHHHHHHHHH
Confidence            5433   23322  12333333333  33578888999998885443322 22     22221 2244445556666655


Q ss_pred             h
Q 008585          549 E  549 (560)
Q Consensus       549 ~  549 (560)
                      +
T Consensus       393 g  393 (746)
T PTZ00429        393 A  393 (746)
T ss_pred             H
Confidence            5

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.02  E-value=3.4e-07  Score=95.09  Aligned_cols=327  Identities=18%  Similarity=0.119  Sum_probs=207.4

Q ss_pred             hchHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCc-
Q 008585          153 HGNTRELLARLQI--GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS-  228 (560)
Q Consensus       153 ~~~i~~Ll~~L~~--~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~-  228 (560)
                      ...++.++..++.  +..+.+.+....+..+..+.......+.+.+..+.|+++|..++ ..+++..++++..+-...+ 
T Consensus        50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~  129 (678)
T KOG1293|consen   50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY  129 (678)
T ss_pred             hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc
Confidence            3456677777654  45677777888888888888888888889999999999999998 8899999999999987664 


Q ss_pred             --hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH---
Q 008585          229 --CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK---  303 (560)
Q Consensus       229 --~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~---  303 (560)
                        ..........+..+.-++.-........-+....+++..++.+.-+..+|..+.+.-++..-+...|..|...++   
T Consensus       130 q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~  209 (678)
T KOG1293|consen  130 QDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGD  209 (678)
T ss_pred             cccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccc
Confidence              222223333444444444423333333444444455544555544555555444333332222222222222222   


Q ss_pred             ------------------------------------------------HhcC-C--------------------------
Q 008585          304 ------------------------------------------------NISA-V--------------------------  308 (560)
Q Consensus       304 ------------------------------------------------nLa~-~--------------------------  308 (560)
                                                                      ++.. +                          
T Consensus       210 ~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i  289 (678)
T KOG1293|consen  210 RILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCI  289 (678)
T ss_pred             eeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhh
Confidence                                                            2210 0                          


Q ss_pred             -------------------------chhHHHHHhcCcHHHHHHHhhc---------------------------------
Q 008585          309 -------------------------PEVRQMLAEEGIVSVMIKLLDC---------------------------------  330 (560)
Q Consensus       309 -------------------------~~~~~~i~e~g~v~~L~~lL~~---------------------------------  330 (560)
                                               +.+.....++...+...+++..                                 
T Consensus       290 ~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~  369 (678)
T KOG1293|consen  290 VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISL  369 (678)
T ss_pred             eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhH
Confidence                                     0001111122222222222210                                 


Q ss_pred             -------------------CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhhc
Q 008585          331 -------------------GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG  389 (560)
Q Consensus       331 -------------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla~  389 (560)
                                         .+ ......++.++.+++..-...+.-.-...+.+++++++.+|+  ++..++++|.|+..
T Consensus       370 ~k~~l~~~t~~~l~~~~~~kd-~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm  448 (678)
T KOG1293|consen  370 KKEILETTTESHLMCLPPIKD-HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM  448 (678)
T ss_pred             HHHHHHHHHHHHHcccccccc-HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence                               01 134445555666655543333333333457889999997754  67889999999998


Q ss_pred             --cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585          390 --SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI  465 (560)
Q Consensus       390 --~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL  465 (560)
                        .+.+..++..|+|+.+..++...++.++..+.|+|+++..+  ++.+......=....+..+...++..|++.+...|
T Consensus       449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll  528 (678)
T KOG1293|consen  449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL  528 (678)
T ss_pred             hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence              57788999999999999999999999999999999999865  34444444444577788888999999999999999


Q ss_pred             HHhcCCChhhHHHhh
Q 008585          466 SSLVTLPQNCREVKR  480 (560)
Q Consensus       466 ~~L~~~~~~~~~~~~  480 (560)
                      .|+..+....-+++-
T Consensus       529 RNl~c~~~~svdfll  543 (678)
T KOG1293|consen  529 RNLTCNSRKSVDFLL  543 (678)
T ss_pred             HHhhcCcHHHHHHHH
Confidence            999977655544443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.99  E-value=1.8e-08  Score=101.21  Aligned_cols=222  Identities=17%  Similarity=0.183  Sum_probs=155.1

Q ss_pred             CHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCc-hHHHHHh------CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC
Q 008585          197 NIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVS------EGVLPPLIRLVESGSTVGKEKATISLQRLSMS  267 (560)
Q Consensus       197 ~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  267 (560)
                      .+..++.+|+.  ++.++....+..+..+..+++ ..+.+..      .....++++++..++..++..++.+|..+...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            36666677654  468999999999999988776 3433333      13688999999999999999999999999765


Q ss_pred             hhhHHHHHhCCChHHHHHHhcc----CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh------hcCCchhHH
Q 008585          268 AEMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL------DCGILLGSK  337 (560)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL------~~~~~~~v~  337 (560)
                      .+....-...+.++.++..+++    .+.+.+..++.+|.+|...++.|..+.+.++++.+..++      .++....++
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            4433322224455777777765    345677899999999999999999999999999999999      344445889


Q ss_pred             HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc-cc--cHHHHHhCCcHHHHHHHHhc
Q 008585          338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SV--SQEVLISLGFFPRLVHVLKA  411 (560)
Q Consensus       338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~-~~--~~~~l~~~~~i~~Lv~lL~~  411 (560)
                      ++++.|+|.|+.. +...+.+.+.+.++.|++++..   .++...++.+|.|+.. ..  ....++..|+++.+-.+...
T Consensus       216 Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r  294 (312)
T PF03224_consen  216 YQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER  294 (312)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred             HHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence            9999999999996 5556778888899999999865   5678899999999998 33  66677777755555554443


Q ss_pred             --CCHHHHHH
Q 008585          412 --GSLGAQQA  419 (560)
Q Consensus       412 --~~~~v~~~  419 (560)
                        +|+++.+.
T Consensus       295 k~~Dedl~ed  304 (312)
T PF03224_consen  295 KWSDEDLTED  304 (312)
T ss_dssp             --SSHHHHHH
T ss_pred             CCCCHHHHHH
Confidence              46666554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=3.5e-08  Score=104.43  Aligned_cols=245  Identities=19%  Similarity=0.174  Sum_probs=190.6

Q ss_pred             ChHHHHHHHHHHHHhc--CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH
Q 008585          291 DSVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL  368 (560)
Q Consensus       291 ~~~~~~~a~~aL~nLa--~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~  368 (560)
                      |+..+..++.=|+.+-  .+++.-..|--...+|.|+.+|++.+..++...||++|.+|+..-+.-...+++.++|+.|+
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~  260 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL  260 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence            4444444444344332  24444444444568999999999988779999999999999986666667888999999999


Q ss_pred             HhccC---CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCH
Q 008585          369 AYLDG---PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCT  443 (560)
Q Consensus       369 ~ll~~---~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i  443 (560)
                      .-|..   -++.++++.+|-.+++.. ...+.+.|.+...+.+|.--+..+|+.|..+..|+|.+  ++.-+.+.  ..+
T Consensus       261 ~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--eal  337 (1051)
T KOG0168|consen  261 EKLLTIEYIDVAEQSLQALEKISRRH-PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EAL  337 (1051)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHH
Confidence            88754   678899999999998732 35677899999999999988999999999999999966  44444443  459


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhc---CCChhhHHHhhhCCChHHHHhccCCCCc---hhhHHHHHHHHHHhCCC-hh
Q 008585          444 PLLIKLLEAKPNSVREVAAQAISSLV---TLPQNCREVKRDDKSVPNLVQLLDPSPQ---NTAKKYAVACLASLSPS-KK  516 (560)
Q Consensus       444 ~~Lv~ll~s~~~~v~~~A~~aL~~L~---~~~~~~~~~~~~~~~v~~Lv~lL~~~~~---~~~~~~a~~~L~~L~~~-~~  516 (560)
                      |.|..++...+....+.++.+++.++   .+.++.-+.+...+.+....+||.-++.   .......+..+..++.+ +.
T Consensus       338 PlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl  417 (1051)
T KOG0168|consen  338 PLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL  417 (1051)
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChH
Confidence            99999999988889999999999998   5667777777778889999999876632   22455566677777764 78


Q ss_pred             hHHHHHHcChhHHHHHhhccCc
Q 008585          517 CKKLMISYGAIGYLKKLSEMDI  538 (560)
Q Consensus       517 ~r~~i~~~g~i~~L~~L~~~~~  538 (560)
                      .+..+...|....|.++.....
T Consensus       418 ~~~tl~k~~I~~~L~~il~g~s  439 (1051)
T KOG0168|consen  418 LFRTLLKLDIADTLKRILQGYS  439 (1051)
T ss_pred             HHHHHHHhhHHHHHHHHHhccC
Confidence            9999999999999998876654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.97  E-value=3.4e-08  Score=98.10  Aligned_cols=259  Identities=20%  Similarity=0.198  Sum_probs=188.5

Q ss_pred             HHHHhCCChHHHHHHhccCChH--HHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          272 RAIVGHGGVRPLIEICQTGDSV--SQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~~~~~~--~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ..+...|++..|++++..++-+  ++..++..|-.+.. .+|+..++..| ...++.+.+...+.+.+...+.+|.++..
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK  251 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK  251 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence            4566789999999999987654  47888988887754 37888888876 56666666655555889999999999999


Q ss_pred             CChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 008585          350 SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL  424 (560)
Q Consensus       350 ~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL  424 (560)
                      ++++..+.++..|+++.++.-...  |.+..++.-+|+|++.   ...+..+++...-++|..+-.+.|.-++..|+.++
T Consensus       252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV  331 (832)
T KOG3678|consen  252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV  331 (832)
T ss_pred             hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence            999999999999999998887754  7788999999999998   46778899999999999988888999999999999


Q ss_pred             HHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHH
Q 008585          425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA  504 (560)
Q Consensus       425 ~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a  504 (560)
                      +.++.+.+.-+.+...|.+...--++.+-++.--          +.+... -....-.+.+.+|+.+|+++--+ .  .+
T Consensus       332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd-~aQG~~~d~LqRLvPlLdS~R~E-A--q~  397 (832)
T KOG3678|consen  332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHD-YAQGRGPDDLQRLVPLLDSNRLE-A--QC  397 (832)
T ss_pred             hhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhh-hhccCChHHHHHhhhhhhcchhh-h--hh
Confidence            9999998888888888866544444444444211          111111 00111124468899999976221 2  22


Q ss_pred             HHHHH-----HhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHHH
Q 008585          505 VACLA-----SLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLE  546 (560)
Q Consensus       505 ~~~L~-----~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~  546 (560)
                      +.++.     .+-+-..-.+.+.+-|+|+.|.+++.+.++-+.|++.
T Consensus       398 i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAs  444 (832)
T KOG3678|consen  398 IGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFAS  444 (832)
T ss_pred             hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            33322     1211222346677889999999999988775544443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=9.1e-08  Score=93.41  Aligned_cols=184  Identities=19%  Similarity=0.233  Sum_probs=155.0

Q ss_pred             ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHH
Q 008585          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL  242 (560)
Q Consensus       164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L  242 (560)
                      ++.+++.+..|+..|..++. +-+|...++..||..+++.++++++..+|+.|+++|+..+.+.+ ....+++.|+++.|
T Consensus        93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            45678999999999999986 55678889999999999999999999999999999999999876 88999999999999


Q ss_pred             HHhhhcC-CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcC-CchhHHHHHh
Q 008585          243 IRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISA-VPEVRQMLAE  317 (560)
Q Consensus       243 v~lL~~~-~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~-~~~~~~~i~e  317 (560)
                      +..+.++ +..++.+|..+++.+-.+ ++....|...+|...|..++.+  .+...++.++..+.++.. ....+..+..
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999876 556779999999999876 6778889999999999999998  567788999999999975 3344445555


Q ss_pred             cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      .+....+..+....+. ++++.++.++..+..
T Consensus       252 ~~f~~~~~~l~~~l~~-~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDF-EVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccch-hhhHHHHHHHHHHHH
Confidence            7777777777777775 789998888776654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.92  E-value=1.1e-07  Score=94.67  Aligned_cols=265  Identities=17%  Similarity=0.198  Sum_probs=194.2

Q ss_pred             HHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCC
Q 008585          191 AVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMS  267 (560)
Q Consensus       191 ~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~  267 (560)
                      .+...|++..|++++.+++  ..++.+|.+.|-.+... ++++.++..| +..++.+-+. ..++.+...+.+|.+|-.+
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            4556789999999999987  45589999999887643 4677777776 5555555543 4677888899999999776


Q ss_pred             -hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHH
Q 008585          268 -AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL  344 (560)
Q Consensus       268 -~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L  344 (560)
                       .+....+++.|++..++-.|+..+|.+.++++-+|.|++-  ..+.++.|++..+-+-|+.+..+.++ -.+.+||-+.
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe-l~R~~AClAV  331 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE-LLRLHACLAV  331 (832)
T ss_pred             hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH-HHHHHHHHHH
Confidence             6678899999999999999999999999999999999985  45889999999999999988877765 6899999999


Q ss_pred             HHHccCChhHHHHHHhCCCH---HHHHHhccCCccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 008585          345 QNLTASNENLRRSVVSEGGI---RSLLAYLDGPLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQA  419 (560)
Q Consensus       345 ~~La~~~~~~~~~i~~~g~l---~~L~~ll~~~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~  419 (560)
                      +.|+... +.-..+-++|.+   ++++..++..           .+++  ....+ =.-..-++.|+.+|++.-.+.|-.
T Consensus       332 ~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~-----------~FARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i  398 (832)
T KOG3678|consen  332 AVLATNK-EVEREVRKSGTLALVEPLVASLDPG-----------RFARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCI  398 (832)
T ss_pred             hhhhhhh-hhhHHHhhccchhhhhhhhhccCcc-----------hhhhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhh
Confidence            9999854 444556667654   4444444431           1111  00000 001224788899998766666665


Q ss_pred             HHHHHHHHhC--C-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          420 AASALCRVCT--S-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       420 A~~aL~~La~--~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      ++.-++.=+.  + ..--+.+.+-|.|+.|-++..+.+......|.++|..|...
T Consensus       399 ~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  399 GAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE  453 (832)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence            5555544331  2 22345566779999999999988777778899999888643

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.2e-06  Score=96.68  Aligned_cols=345  Identities=19%  Similarity=0.199  Sum_probs=224.3

Q ss_pred             HHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch--HHHHH
Q 008585          158 ELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC--ENWLV  234 (560)
Q Consensus       158 ~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~--~~~l~  234 (560)
                      .++..++.. .+.++.+-++.+.++++..-..    -=.+.++.|.+..+++++..|+.|+.+|..+...-.+  ...+-
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~  158 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD  158 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH
Confidence            445555544 4556777778888887643211    0014577788888899999999999999999875432  22211


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-hhHHHHHh-CCChHHHHHHh----ccCChHHHHHHHHHHHHhcCC
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVG-HGGVRPLIEIC----QTGDSVSQAAAACTLKNISAV  308 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~l~~-~g~i~~Lv~ll----~~~~~~~~~~a~~aL~nLa~~  308 (560)
                        ...+.+.+.+.+.+..+|..+++++..++..- +++...-. ...+|.++..+    ..++...-..+..+|..++..
T Consensus       159 --~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~  236 (1075)
T KOG2171|consen  159 --DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES  236 (1075)
T ss_pred             --HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence              13445555666666669999999999886542 23222211 23345555544    456666677888888888753


Q ss_pred             -chhHHHHHhcCcHHHHHHHhhcCC-chhHHHHHHHHHHHHccCChhHHHHHHh--CCCHHHHHHhccC-----------
Q 008585          309 -PEVRQMLAEEGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNENLRRSVVS--EGGIRSLLAYLDG-----------  373 (560)
Q Consensus       309 -~~~~~~i~e~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~La~~~~~~~~~i~~--~g~l~~L~~ll~~-----------  373 (560)
                       +..-+...+ .++....++..+.+ +..+|..|+.+|..++...+...+....  ...++.++.++.+           
T Consensus       237 ~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d  315 (1075)
T KOG2171|consen  237 EPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED  315 (1075)
T ss_pred             chHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence             333222222 35666666666532 2379999999999998864443332222  2245556665522           


Q ss_pred             -------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHH
Q 008585          374 -------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPL  445 (560)
Q Consensus       374 -------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~  445 (560)
                             ......|..+|-.++..-..+.+ -.-+++.+-.++++.+..-+..++.+|+.++.+ .+...... ...++.
T Consensus       316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v-~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~  393 (1075)
T KOG2171|consen  316 DLDEDDEETPYRAAEQALDRLALHLGGKQV-LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI  393 (1075)
T ss_pred             ccccccccCcHHHHHHHHHHHHhcCChhhe-hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence                   11455778888888773222211 123567777888999999999999999999955 33322221 356888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          446 LIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       446 Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      .+..+.++++.||..|+.++..++.+ .+...... .+...+.|+..+++.....+..++..++.+++
T Consensus       394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~  460 (1075)
T KOG2171|consen  394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFS  460 (1075)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence            88889999999999999999999965 33333333 34566789999998866678888888888775

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1e-07  Score=92.99  Aligned_cols=182  Identities=20%  Similarity=0.231  Sum_probs=159.3

Q ss_pred             CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHH
Q 008585          249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKL  327 (560)
Q Consensus       249 ~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~l  327 (560)
                      .+.+-++.+..-|..+..+-+++..+...||+.+++..+.+.++.+|..|+++++..+. +|..+..+.|.|+++.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            37778888999999999999999999999999999999999999999999999999987 67999999999999999999


Q ss_pred             hhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc--cccHHHHHhCCc
Q 008585          328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLGF  401 (560)
Q Consensus       328 L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~--~~~~~~l~~~~~  401 (560)
                      +.+.++..++..|+.+++.+..+++.....+...+|...|..++++    ...+..++..+..+..  ......+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            9977766889999999999999888888888999999999999976    3457889999999988  344455666788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585          402 FPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~~  430 (560)
                      ...+..+....+.++.+.+..++..+...
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            88888888888899999999888877644

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=5.7e-07  Score=96.99  Aligned_cols=324  Identities=20%  Similarity=0.264  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHHHhhChHHHHHHh----hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHH
Q 008585          170 AKHKALDSLVEAMKEDEKNVLAVM----GRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR  244 (560)
Q Consensus       170 ~~~~A~~~L~~L~~~~~~~~~~i~----~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~  244 (560)
                      -..-++.+|.++...+|+-...+-    --|..+.+..+|.. .++.++..|+.++..+..+.++...++..|++..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            345678899999988885433221    23678888888875 4689999999999999999999999999999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHH-hccCChHHHHHHHHHHHHhcCC----chhHHHHHh--
Q 008585          245 LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAV----PEVRQMLAE--  317 (560)
Q Consensus       245 lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~----~~~~~~i~e--  317 (560)
                      +|.+. +..|+.+..+|+.|+.+++..++-.++|++..+..+ |.+.++..|..++..|..+...    |..+..++.  
T Consensus      1821 lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred             HHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence            99875 567999999999999999999998999998888765 4567889999999999999643    222221111  


Q ss_pred             -c-------CcHHHHHHHhhcCC--c-----hhHHHHHHHHHHHHcc-------CC------------------------
Q 008585          318 -E-------GIVSVMIKLLDCGI--L-----LGSKEYAAECLQNLTA-------SN------------------------  351 (560)
Q Consensus       318 -~-------g~v~~L~~lL~~~~--~-----~~v~~~a~~~L~~La~-------~~------------------------  351 (560)
                       +       ..-+..++.++..+  +     ...+......+..++.       .+                        
T Consensus      1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVG 1979 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVG 1979 (2235)
T ss_pred             hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccc
Confidence             1       11144455554321  1     0122223333333332       00                        


Q ss_pred             -hhHHHHHHhCC------------CHHHHHHhccCCc----cHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcC
Q 008585          352 -ENLRRSVVSEG------------GIRSLLAYLDGPL----PQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAG  412 (560)
Q Consensus       352 -~~~~~~i~~~g------------~l~~L~~ll~~~~----~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~  412 (560)
                       ..+|..+.+.+            .++.+++++..+.    ..+.-..++..|.+  +...+.+-..|.+|.++..+...
T Consensus      1980 G~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~ 2059 (2235)
T KOG1789|consen 1980 GSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ 2059 (2235)
T ss_pred             hhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc
Confidence             01222222221            1444444443311    12222333444444  44455666679999999999887


Q ss_pred             CHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhc
Q 008585          413 SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQL  491 (560)
Q Consensus       413 ~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~l  491 (560)
                      +..+-..|.+.|..|+.+.-+.++|....++..++..++.. ...-.-|+++|..+... ........-..+.++.|+++
T Consensus      2060 n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~L 2138 (2235)
T KOG1789|consen 2060 NTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQL 2138 (2235)
T ss_pred             CCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHH
Confidence            77777899999999999999999999988899999988744 45556899999999742 22222222346889999999


Q ss_pred             cCCC
Q 008585          492 LDPS  495 (560)
Q Consensus       492 L~~~  495 (560)
                      |+..
T Consensus      2139 Ld~~ 2142 (2235)
T KOG1789|consen 2139 LDSS 2142 (2235)
T ss_pred             hccc
Confidence            9976

>PTZ00429 beta-adaptin; Provisional

Probab=98.87  E-value=1.4e-05  Score=88.04  Aligned_cols=290  Identities=12%  Similarity=0.145  Sum_probs=194.4

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      ...+..+...+...++.+|..|+-++..+...+++   .+.+.|.++.|.++|.+.++.++..|+.+|..+....+.. .
T Consensus       139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l  214 (746)
T PTZ00429        139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I  214 (746)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence            33456667778889999999999999999876663   3345678999999999999999999999999998665422 1


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC--ch
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PE  310 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~  310 (560)
                      -...+.+..++..|.+.++..+.....+|....  ++....  ....+..+...+++.++.+...|+.++.++...  ++
T Consensus       215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~  290 (746)
T PTZ00429        215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE  290 (746)
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence            223345666777777778888888888876642  211111  123457788888889999999999999999864  23


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHHHhhc
Q 008585          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG  389 (560)
Q Consensus       311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~nla~  389 (560)
                      ...... ....+.++.++. +++ ++++.++..|..+....+.    ++... +..+.-..++ ..++...+.+|..++.
T Consensus       291 ~~~~~~-~rl~~pLv~L~s-s~~-eiqyvaLr~I~~i~~~~P~----lf~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lan  362 (746)
T PTZ00429        291 LIERCT-VRVNTALLTLSR-RDA-ETQYIVCKNIHALLVIFPN----LLRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVT  362 (746)
T ss_pred             HHHHHH-HHHHHHHHHhhC-CCc-cHHHHHHHHHHHHHHHCHH----HHHHH-HHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence            222222 123355666654 444 7999999998888875543    22221 3333333344 4477888888888887


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L  468 (560)
                      +.+...+     +.-|..+..+.+.+.++.+..++++++.. +....     .++..|++++..+.. +...++.++.++
T Consensus       363 e~Nv~~I-----L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~I  431 (746)
T PTZ00429        363 PSVAPEI-----LKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDI  431 (746)
T ss_pred             cccHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHH
Confidence            6555443     46677777777888888899999988843 33222     346666666654332 333455555555


Q ss_pred             c
Q 008585          469 V  469 (560)
Q Consensus       469 ~  469 (560)
                      .
T Consensus       432 l  432 (746)
T PTZ00429        432 V  432 (746)
T ss_pred             H
Confidence            4

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=6.7e-08  Score=99.88  Aligned_cols=344  Identities=16%  Similarity=0.133  Sum_probs=226.0

Q ss_pred             hhhhHHhhhhhhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhh---hchHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 008585          106 QSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATT---HGNTRELLARLQIGHLEAKHKALDSLVEAM  182 (560)
Q Consensus       106 ~s~~~~~~~~l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~---~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~  182 (560)
                      +.+++-+.+..-..++|.+.++|.-+     .++...   .++++..   ...++.|...|.+.+.....-|..+|..++
T Consensus        85 ~~~~~yiKs~~l~~lgd~~~lIr~tv-----GivITT---I~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIc  156 (885)
T KOG2023|consen   85 SEVLDYIKSECLHGLGDASPLIRATV-----GIVITT---IASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKIC  156 (885)
T ss_pred             hHHHHHHHHHHHhhccCchHHHHhhh-----hheeee---eecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence            44677777777788999888887322     011111   1112222   234777888888888888889999999999


Q ss_pred             hhChHHHHHHh-hC---CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh-CCCHHHHHHhhhcCCHHHHHHH
Q 008585          183 KEDEKNVLAVM-GR---SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS-EGVLPPLIRLVESGSTVGKEKA  257 (560)
Q Consensus       183 ~~~~~~~~~i~-~~---g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~a  257 (560)
                      .++.+.-..-+ +.   -.+|.++++.+++++.+|..|+.++..+.-.... ..+.. ...+..+..+-.+.++.+|...
T Consensus       157 EDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~v  235 (885)
T KOG2023|consen  157 EDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNV  235 (885)
T ss_pred             hhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence            87664322211 11   2488899999999999999999999887654431 11111 1256667777788899999999


Q ss_pred             HHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHh-------
Q 008585          258 TISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLL-------  328 (560)
Q Consensus       258 ~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL-------  328 (560)
                      |.++..|......+-.-.=.++++.++..-++.+.++--.||.-...++..+-.+..+..  ...+|.|+.=+       
T Consensus       236 C~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~  315 (885)
T KOG2023|consen  236 CRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI  315 (885)
T ss_pred             HHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence            999999976533333222356778888888888889999999999999988744444443  45666665433       


Q ss_pred             ---hcCCc---------------------------------------------hhHHHHHHHHHHHHccCChhHHHHHHh
Q 008585          329 ---DCGIL---------------------------------------------LGSKEYAAECLQNLTASNENLRRSVVS  360 (560)
Q Consensus       329 ---~~~~~---------------------------------------------~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (560)
                         ++.++                                             -.+|..++.+|.-|+.        ++.
T Consensus       316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~  387 (885)
T KOG2023|consen  316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFG  387 (885)
T ss_pred             HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------hhH
Confidence               10000                                             0345555555555543        122


Q ss_pred             CCCHHHHHHhcc----C--CccHHHHHHHHHHhhccccHHHHH--hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--
Q 008585          361 EGGIRSLLAYLD----G--PLPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--  430 (560)
Q Consensus       361 ~g~l~~L~~ll~----~--~~~~~~a~~~L~nla~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--  430 (560)
                      ...++.++.+++    +  -.+++.++-+++.++.. +.+-++  -...++.|+.+|.+..+-|+..++|+|++.+..  
T Consensus       388 ~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~  466 (885)
T KOG2023|consen  388 DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV  466 (885)
T ss_pred             HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence            223555555553    3  35789999999999861 000111  113588889999999999999999999999865  


Q ss_pred             hhHH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          431 AEMK-KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       431 ~~~~-~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      .+.+ +.+  ..++..|++.+-.++..||+.|+.+++.+-
T Consensus       467 ~~~~~~~f--~pvL~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  467 QDSRDEYF--KPVLEGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             cCChHhhh--HHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            2223 333  233555555666788999999999999884

>PF05536 Neurochondrin: Neurochondrin

Probab=98.79  E-value=3.9e-06  Score=89.94  Aligned_cols=370  Identities=17%  Similarity=0.165  Sum_probs=236.2

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChH---HHHHHhhCCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHh
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEK---NVLAVMGRSNIAALVQLLTAT-------SPRIREKTVTVICSLA  224 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~---~~~~i~~~g~v~~Lv~lL~~~-------~~~v~~~A~~~L~~La  224 (560)
                      .+.+.+..|+..+.+.|..++.-+.+++..++.   .++.+.+.=|.+.|-++|+++       ....+..|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            478889999999978888899999999886663   234577877789999999873       3677889999999999


Q ss_pred             cCCch--HHHHHhCCCHHHHHHhhhcCCH-HHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585          225 ESGSC--ENWLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (560)
Q Consensus       225 ~~~~~--~~~l~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (560)
                      .+++.  ...++.  -||.|++++.+.+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....++.+
T Consensus        86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            98763  344444  59999999988877 89999999999999999999999999999999999987 66778888888


Q ss_pred             HHHhcCCchhH---HHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH-HHHHHhCCCHHH----HHHhcc
Q 008585          302 LKNISAVPEVR---QMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL-RRSVVSEGGIRS----LLAYLD  372 (560)
Q Consensus       302 L~nLa~~~~~~---~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~-~~~i~~~g~l~~----L~~ll~  372 (560)
                      |.++....+..   ..-.. ...++.+...+...++ ..+...+..|..+-...+.. .+......-+..    +..++.
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~-~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~  241 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHG-EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ  241 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence            88886532210   11111 2355666666666665 67888899999887755311 111122223333    333444


Q ss_pred             C---CccHHHHHHHHHHhhccccHHHHH-hC-----CcHHHHHHHHh--------c----CC-H---H----------HH
Q 008585          373 G---PLPQESAVGALRNLVGSVSQEVLI-SL-----GFFPRLVHVLK--------A----GS-L---G----------AQ  417 (560)
Q Consensus       373 ~---~~~~~~a~~~L~nla~~~~~~~l~-~~-----~~i~~Lv~lL~--------~----~~-~---~----------v~  417 (560)
                      +   +..|.+++....++....+.+-+. ..     .|.-.++++..        .    .+ +   .          +-
T Consensus       242 sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~il  321 (543)
T PF05536_consen  242 SRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSIL  321 (543)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHH
Confidence            4   445667777776666521111111 11     23333333221        1    11 1   1          11


Q ss_pred             HHHHHHHHHHhCC------hhH----HHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHhcCCChh-hHHHhh
Q 008585          418 QAAASALCRVCTS------AEM----KKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLVTLPQN-CREVKR  480 (560)
Q Consensus       418 ~~A~~aL~~La~~------~~~----~~~i~~~g~i~~Lv~ll~s------~~~~v~~~A~~aL~~L~~~~~~-~~~~~~  480 (560)
                      +.....+.+-...      ++.    ++.+  .+.+...+++++.      +++..-..+.++|+.-....++ .++.+.
T Consensus       322 E~~I~~l~~~~~~~~~~~~~~~l~kl~~~l--~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v~  399 (543)
T PF05536_consen  322 EHFIGYLVRSLEEESLDLDPDTLLKLRTSL--SETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEVY  399 (543)
T ss_pred             HHHHHHHHhccccccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            2222222221111      111    2222  2345556666642      2222444566666655544443 344443


Q ss_pred             hCCChHHHHhccCCCCc---------hhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHH
Q 008585          481 DDKSVPNLVQLLDPSPQ---------NTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKK  532 (560)
Q Consensus       481 ~~~~v~~Lv~lL~~~~~---------~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~  532 (560)
                        +.++.++.+...+..         -....+.+-+|..++..++.|+.+...|+.+.|.+
T Consensus       400 --~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  400 --GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCD  458 (543)
T ss_pred             --HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHH
Confidence              677888888876622         23566888888999999999999999999776653

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.72  E-value=4.6e-06  Score=82.76  Aligned_cols=270  Identities=13%  Similarity=0.080  Sum_probs=192.5

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCC----HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCch
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSN----IAALVQLLTA-TSPRIREKTVTVICSLAESGSC  229 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~----v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~  229 (560)
                      .....+..|..++.-........+..++......    ++.+.    ...|-..+++ .+++....++++|..+...+++
T Consensus       115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ey  190 (442)
T KOG2759|consen  115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEY  190 (442)
T ss_pred             chHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcch
Confidence            3556677888888777776777777776544322    11111    2334445555 5688888999999999999999


Q ss_pred             HHHHHhCCCHHHHHHhhhc--CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhc
Q 008585          230 ENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNIS  306 (560)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa  306 (560)
                      |..++.++++..++..+.+  .+..++.+.+-|++-|+.++..++.+...+.++.|.++++. ....+-+-++.++.|+.
T Consensus       191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll  270 (442)
T KOG2759|consen  191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL  270 (442)
T ss_pred             hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999843  37889999999999999999999888889999999999986 45677889999999998


Q ss_pred             CCc-------hhHHHHHhcCcHHHHHHHhhcC-CchhHHHH-------HHHHHHHHccCChh------------------
Q 008585          307 AVP-------EVRQMLAEEGIVSVMIKLLDCG-ILLGSKEY-------AAECLQNLTASNEN------------------  353 (560)
Q Consensus       307 ~~~-------~~~~~i~e~g~v~~L~~lL~~~-~~~~v~~~-------a~~~L~~La~~~~~------------------  353 (560)
                      ...       +.+..++..++.+.+-.+-+.. ++.++...       --.-...|++.++.                  
T Consensus       271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e  350 (442)
T KOG2759|consen  271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSE  350 (442)
T ss_pred             ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccccc
Confidence            643       3445566666666554444321 11122221       11222223321111                  


Q ss_pred             -----HHHHHHhC--CCHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 008585          354 -----LRRSVVSE--GGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA  421 (560)
Q Consensus       354 -----~~~~i~~~--g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~  421 (560)
                           +...+-+.  ..+..|+++|+.   |.+...|+.=|+.+.+  |+++..+...|+=+.++++|+++|++|+..|.
T Consensus       351 ~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~AL  430 (442)
T KOG2759|consen  351 KFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHAL  430 (442)
T ss_pred             chHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHH
Confidence                 11111111  137778888864   6667788888899888  78888889999999999999999999999999


Q ss_pred             HHHHHHh
Q 008585          422 SALCRVC  428 (560)
Q Consensus       422 ~aL~~La  428 (560)
                      .|+..+-
T Consensus       431 lavQ~lm  437 (442)
T KOG2759|consen  431 LAVQKLM  437 (442)
T ss_pred             HHHHHHH
Confidence            9988764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.5e-05  Score=76.37  Aligned_cols=334  Identities=15%  Similarity=0.172  Sum_probs=233.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHH----HHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNV----LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~----~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      .+.|-.-|...+..++.-++..+..+..+.+-|.    ..+++.|..+.++..+-.++.++-..|...+..++..+..-.
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale  163 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE  163 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence            3444444556677889999999999988776432    345578899999999999999999999999999999998777


Q ss_pred             HHHhCCCHHHH--HHhhhcCCHHHHHHHHHHHHHhh-CChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcC
Q 008585          232 WLVSEGVLPPL--IRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISA  307 (560)
Q Consensus       232 ~l~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~  307 (560)
                      .+..++..+.+  .++-...+.-.|..+...+-.+. .+++.....-..|.+..|..=++. +|.-++..+......|+.
T Consensus       164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae  243 (524)
T KOG4413|consen  164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE  243 (524)
T ss_pred             HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence            88877766554  34444556677888888888884 467777777788888888777765 677788899999999998


Q ss_pred             CchhHHHHHhcCcHHHHHHHhhcCCc-hhHHHHHHHHHHHHccCChhH----HHHHHhC--CCHHHHHHhc--cCCccHH
Q 008585          308 VPEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENL----RRSVVSE--GGIRSLLAYL--DGPLPQE  378 (560)
Q Consensus       308 ~~~~~~~i~e~g~v~~L~~lL~~~~~-~~v~~~a~~~L~~La~~~~~~----~~~i~~~--g~l~~L~~ll--~~~~~~~  378 (560)
                      .+..++.+..+|.+..+..++...+. ..-+..+++..+.+... +..    -+.+.+.  -.++..++++  ++|+.++
T Consensus       244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimdvseeaicealiiaidgsfEmiEmnDpdaie  322 (524)
T KOG4413|consen  244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE  322 (524)
T ss_pred             HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence            88889999999999999999864332 13344455554444331 111    0112111  1233444454  3488899


Q ss_pred             HHHHHHHHhhc-cccHHHHHhCCc--HHHHHHHHhc-CCHHHHHHHHHHHHHHhCC----h----h------HHHHHHhc
Q 008585          379 SAVGALRNLVG-SVSQEVLISLGF--FPRLVHVLKA-GSLGAQQAAASALCRVCTS----A----E------MKKLVGEA  440 (560)
Q Consensus       379 ~a~~~L~nla~-~~~~~~l~~~~~--i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~----~----~------~~~~i~~~  440 (560)
                      .|+.+++-+.. .+..+.+.+.|-  ..+++.-..+ ....-|..+..+|.+++..    +    +      .+-.+.+.
T Consensus       323 aAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifda  402 (524)
T KOG4413|consen  323 AAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDA  402 (524)
T ss_pred             HHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHH
Confidence            99999999998 567777776664  3444433333 3355677788888888753    1    1      11122211


Q ss_pred             -------CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHh
Q 008585          441 -------GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ  490 (560)
Q Consensus       441 -------g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~  490 (560)
                             .-...+...++.+.++++..+...+..++..+-..+.++...+.++....
T Consensus       403 aaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  403 AAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence                   23445666677788999999999999999999988888877666665443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=1e-05  Score=77.09  Aligned_cols=292  Identities=19%  Similarity=0.222  Sum_probs=194.5

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh--hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      ...++..+++.++.++..|...+..+... . . +.+.  +...++.+.++++..++  -+.|+.+|.+++.+...++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~-~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G-L-QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-c-h-hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence            45778889999999999999999998765 1 1 1221  22457888899988766  778999999999999988888


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh-------CCChHHHHHHhccCCh--HHHHHHHHHHHH
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-------HGGVRPLIEICQTGDS--VSQAAAACTLKN  304 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~-------~g~i~~Lv~ll~~~~~--~~~~~a~~aL~n  304 (560)
                      .+. .+..++..+.+.........+..|.||+.+++....+..       .|.++....++..+..  .--...+..+.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            877 777788888777667788899999999998776554332       3445555555554322  223567889999


Q ss_pred             hcCCchhHHHHHhcCcHHH--HHHHhhcCCchhH-HHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHH
Q 008585          305 ISAVPEVRQMLAEEGIVSV--MIKLLDCGILLGS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAV  381 (560)
Q Consensus       305 La~~~~~~~~i~e~g~v~~--L~~lL~~~~~~~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~  381 (560)
                      ++..+..|..+.+...++.  +..+ .+.+. .+ +...+++|.|.|..... ...+.. ..+..+..+|          
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s-~vRr~GvagtlkN~cFd~~~-h~~lL~-e~~~lLp~iL----------  224 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDS-QVRRGGVAGTLKNCCFDAKL-HEVLLD-ESINLLPAIL----------  224 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcc-cccch-hhhccchHHHHHhhhccchh-HHHHhc-chHHHHHHHH----------
Confidence            9999999999998663332  2222 23232 34 45578999999986554 334443 2222222222          


Q ss_pred             HHHHHhhccc--cHHHHHhCCcHHHHHHHHh-----cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-cC
Q 008585          382 GALRNLVGSV--SQEVLISLGFFPRLVHVLK-----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AK  453 (560)
Q Consensus       382 ~~L~nla~~~--~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-s~  453 (560)
                         .-++.++  .-+.+  .+....| ++|.     ..++.++..-..+|.-||.....|+.+...|+-+.+-.+-+ .+
T Consensus       225 ---lPlagpee~sEEdm--~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~  298 (353)
T KOG2973|consen  225 ---LPLAGPEELSEEDM--AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEE  298 (353)
T ss_pred             ---hhcCCccccCHHHH--hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCC
Confidence               2222211  01111  1222333 6664     35799999999999999999999999999886665554443 35


Q ss_pred             CHHHHHHHHHHHHHhcCCCh
Q 008585          454 PNSVREVAAQAISSLVTLPQ  473 (560)
Q Consensus       454 ~~~v~~~A~~aL~~L~~~~~  473 (560)
                      ++++++.+-.....+....+
T Consensus       299 ded~~~ace~vvq~Lv~~e~  318 (353)
T KOG2973|consen  299 DEDIREACEQVVQMLVRLEP  318 (353)
T ss_pred             cHHHHHHHHHHHHHHHhccc
Confidence            67777776666666654433

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=5.1e-06  Score=87.73  Aligned_cols=307  Identities=16%  Similarity=0.148  Sum_probs=197.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHH-HHHh
Q 008585          200 ALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMAR-AIVG  276 (560)
Q Consensus       200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~-~l~~  276 (560)
                      .+=+-+++++..-++.|+.+++.+-..++ .+..-+..+++|.+++++.+.+..++..++|++.+++.. ++... ...-
T Consensus       368 Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l  447 (859)
T KOG1241|consen  368 FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL  447 (859)
T ss_pred             HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence            33335667889999999999999988775 444444556899999999988889999999999999875 43321 2222


Q ss_pred             CCChHHHHHHhccCChHHHHHHHHHHHHhcC--Cc---hh-HHHHHh---cCcHHHHHHHhh--cCCchhHHHHHHHHHH
Q 008585          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISA--VP---EV-RQMLAE---EGIVSVMIKLLD--CGILLGSKEYAAECLQ  345 (560)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~---~~-~~~i~e---~g~v~~L~~lL~--~~~~~~v~~~a~~~L~  345 (560)
                      ...++.++.-+.+ .|.+-.+++|++.+|+.  .+   ++ .....+   ..++..|++.-+  +++....|..+..+|+
T Consensus       448 ~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALm  526 (859)
T KOG1241|consen  448 QSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALM  526 (859)
T ss_pred             hHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence            3445555555554 78999999999999973  11   11 111111   112333333322  2333368899999999


Q ss_pred             HHccCChhHHHHHHhCC---CHHHHHHhccC-----------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHH
Q 008585          346 NLTASNENLRRSVVSEG---GIRSLLAYLDG-----------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVL  409 (560)
Q Consensus       346 ~La~~~~~~~~~i~~~g---~l~~L~~ll~~-----------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL  409 (560)
                      .+....+.-.-.++..-   .+..|-+.+++           .+++..-+.+|.++.+  ...... .....+..+++++
T Consensus       527 ElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~-~~d~iM~lflri~  605 (859)
T KOG1241|consen  527 ELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE-VSDQIMGLFLRIF  605 (859)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHHHHH
Confidence            99886553222222110   11112222221           2345566677777666  221111 2345688888999


Q ss_pred             hc-CCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCC
Q 008585          410 KA-GSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTL-PQNCREVKRDDKS  484 (560)
Q Consensus       410 ~~-~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~  484 (560)
                      ++ ++..+++.|..+++.++.+  +.+.+++  ..+.|.|..-|+. .+-.+...|......|+.. ..+...+-  +..
T Consensus       606 ~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~--d~~  681 (859)
T KOG1241|consen  606 ESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC--DEL  681 (859)
T ss_pred             cCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHH
Confidence            88 5678899999999998865  5666666  5568888888854 4455788889999999843 33333332  356


Q ss_pred             hHHHHhccCCC-CchhhHHHHHHHHHHhC
Q 008585          485 VPNLVQLLDPS-PQNTAKKYAVACLASLS  512 (560)
Q Consensus       485 v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~  512 (560)
                      +..|++.|.++ -+..+|-..++++..++
T Consensus       682 mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA  710 (859)
T KOG1241|consen  682 MTVLVQCLSSPNLHRNVKPAILSVFGDIA  710 (859)
T ss_pred             HHHHHHHccCccccccccchHHHHHHHHH
Confidence            68899999987 34457778888887665

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=2.6e-05  Score=74.42  Aligned_cols=288  Identities=18%  Similarity=0.219  Sum_probs=191.9

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhc
Q 008585          239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE  318 (560)
Q Consensus       239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~  318 (560)
                      ...++.++.+.++.++..|..-+..++...-..+.-.+.-.++.+.+++...++  -..|+.+|.|++..++.++.+...
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~   82 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD   82 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence            345788999999999999999998887661111111234556788888887666  667889999999999999999887


Q ss_pred             CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHh-C----CCHHHHHHhc-cC----CccHHHHHHHHHHhh
Q 008585          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-E----GGIRSLLAYL-DG----PLPQESAVGALRNLV  388 (560)
Q Consensus       319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~----g~l~~L~~ll-~~----~~~~~~a~~~L~nla  388 (560)
                       .+..++..+-++.. ..-...++.|.|++...+........ .    .++..++..+ +.    ...-.....++.|++
T Consensus        83 -~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   83 -LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             -HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence             88888888887765 68889999999999987776554443 2    3455555544 32    123456677888888


Q ss_pred             c-cccHHHHHhCC-cHHHHHHHHhcCCHHH-HHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585          389 G-SVSQEVLISLG-FFPRLVHVLKAGSLGA-QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI  465 (560)
Q Consensus       389 ~-~~~~~~l~~~~-~i~~Lv~lL~~~~~~v-~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL  465 (560)
                      . ..++.-+.... +....+.-+.+.+..+ +...+.+|.|.|.+..++..+.+ ..+..|..+|.              
T Consensus       161 ~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLl--------------  225 (353)
T KOG2973|consen  161 QFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILL--------------  225 (353)
T ss_pred             hhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHh--------------
Confidence            7 55666555443 2222222333444444 45677889999988777776665 33444444432              


Q ss_pred             HHhcCCChhhHHHhhhCCChHHHHhccCCC----CchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhcc-Cchh
Q 008585          466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPS----PQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEM-DIPG  540 (560)
Q Consensus       466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~----~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~-~~~~  540 (560)
                       -|+....-..+-+   ..++.=+|+|...    +++.+++..+.++.-||....+|..+.+.|+.+.+..+=+- ++++
T Consensus       226 -Plagpee~sEEdm---~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded  301 (353)
T KOG2973|consen  226 -PLAGPEELSEEDM---AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDED  301 (353)
T ss_pred             -hcCCccccCHHHH---hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHH
Confidence             2222111111111   1233333777632    44568999999999999999999999999999998877543 3566


Q ss_pred             HHHHHHHHh
Q 008585          541 ARKLLERLE  549 (560)
Q Consensus       541 akkl~~~l~  549 (560)
                      ..++-+++.
T Consensus       302 ~~~ace~vv  310 (353)
T KOG2973|consen  302 IREACEQVV  310 (353)
T ss_pred             HHHHHHHHH
Confidence            666555543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=7.5e-05  Score=77.92  Aligned_cols=317  Identities=17%  Similarity=0.144  Sum_probs=201.2

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHH-HHHHHH----HHHHHhcCCch
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI-REKTVT----VICSLAESGSC  229 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v-~~~A~~----~L~~La~~~~~  229 (560)
                      ..+.+...+.+.+...+..+...+..+..+...  ..+.+.+.+..|...+....... ++.+.-    ...+|+...+ 
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E-  211 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE-  211 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC-
Confidence            345566666777788888888888888765432  23445677888888887654333 322222    2222221111 


Q ss_pred             HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                       ..++.  .+|.++.-..+....+|..+..+...+-.  ++.....+     ++.++.-+.+..+..+..++..|+.++.
T Consensus       212 -Pyiv~--~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~l-----lpsll~~l~~~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  212 -PYIVP--ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLL-----LPSLLGSLLEAKWRTKMASLELLGAMAD  283 (569)
T ss_pred             -chHHh--hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHh-----hhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence             11111  35555555666788889888887777633  22222222     2555555545588899999999999987


Q ss_pred             CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc--CChhHHHHHHhCCCHHHHHHhccCCc-cHHHHHHHH
Q 008585          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPL-PQESAVGAL  384 (560)
Q Consensus       308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~~a~~~L  384 (560)
                      ....+-......++|.+.+.+.+.++ ++++.+..+|..++.  .|+...      ..++.|++.+.+|. ....++..|
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~~~~~e~~~~L  356 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPSCYTPECLDSL  356 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcccchHHHHHhh
Confidence            66666667778899999999999997 899999999999987  333322      12677888888876 566666666


Q ss_pred             HHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHh--cCCHHHHHHHHccCCHHHHHHH
Q 008585          385 RNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE--AGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       385 ~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                      +.=.. ..... -.-.-.++.|-+-+...+...++.++.++.|++.-.+..+.+..  -..+|.|-..+....+++|..+
T Consensus       357 ~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~va  435 (569)
T KOG1242|consen  357 GATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVA  435 (569)
T ss_pred             cceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHH
Confidence            65554 11100 00111355555666777888999999999999965322222211  1345666666666789999999


Q ss_pred             HHHHHHhcCCChhhHHHhhhCCChHHHHhccCC
Q 008585          462 AQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP  494 (560)
Q Consensus       462 ~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~  494 (560)
                      ..+|+.+.....+...    .+.++.+...+.+
T Consensus       436 arAL~~l~e~~g~~~f----~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  436 ARALGALLERLGEVSF----DDLIPELSETLTS  464 (569)
T ss_pred             HHHHHHHHHHHHhhcc----cccccHHHHhhcc
Confidence            9999988644333222    3445666666543

>TIGR02270 conserved hypothetical protein

Probab=98.39  E-value=0.00013  Score=75.35  Aligned_cols=243  Identities=16%  Similarity=0.090  Sum_probs=167.2

Q ss_pred             HHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          156 TRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       156 i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      ++.++..|. ..+.++...++..+..  .+++         ..+..|+..|.+.++.++..++.+|+.+..         
T Consensus        56 ~~~L~~aL~~d~~~ev~~~aa~al~~--~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---------  115 (410)
T TIGR02270        56 TELLVSALAEADEPGRVACAALALLA--QEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG---------  115 (410)
T ss_pred             HHHHHHHHhhCCChhHHHHHHHHHhc--cCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---------
Confidence            556666663 4445554443333321  1111         138899999999999999999999986543         


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM  314 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~  314 (560)
                       .+..+.|+.+|++.++.++..+..++....           ....+.+..++++.++.++..|+.+|+.+-.       
T Consensus       116 -~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-------  176 (410)
T TIGR02270       116 -RQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPR-------  176 (410)
T ss_pred             -hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence             346788999999999999988887776622           2234678899999999999999999988764       


Q ss_pred             HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-CCccHHHHHHHHHHhhccccH
Q 008585          315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-GPLPQESAVGALRNLVGSVSQ  393 (560)
Q Consensus       315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~~~a~~~L~nla~~~~~  393 (560)
                         ...++.|...+.+.++ .|+..|+..+..+-.  +..         +..+..+.. ....+...+.++..+..    
T Consensus       177 ---~~a~~~L~~al~d~~~-~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~g~~~~~~l~~~lal~~----  237 (410)
T TIGR02270       177 ---RLSESTLRLYLRDSDP-EVRFAALEAGLLAGS--RLA---------WGVCRRFQVLEGGPHRQRLLVLLAVAG----  237 (410)
T ss_pred             ---ccchHHHHHHHcCCCH-HHHHHHHHHHHHcCC--HhH---------HHHHHHHHhccCccHHHHHHHHHHhCC----
Confidence               2466777777888886 899999999987743  221         334444222 22223333333322221    


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh
Q 008585          394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ  473 (560)
Q Consensus       394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~  473 (560)
                          ....++.|..+++...  ++..++.+++.+...          ..++.|++.+...  .++..|.+++..|+.-+-
T Consensus       238 ----~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~l  299 (410)
T TIGR02270       238 ----GPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREP--PWARLAGEAFSLITGMDV  299 (410)
T ss_pred             ----chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCc--HHHHHHHHHHHHhhCCCc
Confidence                1246888888887654  999999999988753          5788899888643  399999999999986443


Q ss_pred             h
Q 008585          474 N  474 (560)
Q Consensus       474 ~  474 (560)
                      .
T Consensus       300 ~  300 (410)
T TIGR02270       300 A  300 (410)
T ss_pred             c
Confidence            3

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.36  E-value=0.00016  Score=73.89  Aligned_cols=290  Identities=19%  Similarity=0.178  Sum_probs=197.3

Q ss_pred             HHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHH
Q 008585          175 LDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STV  252 (560)
Q Consensus       175 ~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~  252 (560)
                      ++.|..+.+.++.-+....-....+.+..++-+++.+++..+.+++..+..+.+.-..+.+.+.--.+++.|..+  +..
T Consensus         4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~   83 (371)
T PF14664_consen    4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV   83 (371)
T ss_pred             HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence            456777777777544444333345555554444459999999999999999998888888888767777777765  445


Q ss_pred             HHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCC
Q 008585          253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI  332 (560)
Q Consensus       253 ~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~  332 (560)
                      -|++|...++.+..-++.... ...|.++.++.+..+.+...+..|..+|+.++-  -+.+.+.+.|++..+++.+-++.
T Consensus        84 ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~l~d~~  160 (371)
T PF14664_consen   84 EREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRALIDGS  160 (371)
T ss_pred             HHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHHHHhcc
Confidence            688999999988654333222 245677999999999999999999999999986  23355678999999999998876


Q ss_pred             chhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC-----------ccHHHHHHHHHHhhcc-ccHHHHH--h
Q 008585          333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP-----------LPQESAVGALRNLVGS-VSQEVLI--S  398 (560)
Q Consensus       333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~-----------~~~~~a~~~L~nla~~-~~~~~l~--~  398 (560)
                      . ++.+..+.++..+... +..|+++...--++.++.-+.+.           +....+..++..+-++ .+--.+.  +
T Consensus       161 ~-~~~~~l~~~lL~lLd~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~  238 (371)
T PF14664_consen  161 F-SISESLLDTLLYLLDS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND  238 (371)
T ss_pred             H-hHHHHHHHHHHHHhCC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence            5 6888888888888764 56566565544566666655332           1223344444444431 1111111  1


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--h----------------hH---------------------------
Q 008585          399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--A----------------EM---------------------------  433 (560)
Q Consensus       399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~----------------~~---------------------------  433 (560)
                      ...+..|+..|..++++++......+..+-.-  +                ..                           
T Consensus       239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l  318 (371)
T PF14664_consen  239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNL  318 (371)
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccH
Confidence            14677888888888888888887777776421  0                00                           


Q ss_pred             --------HHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhc
Q 008585          434 --------KKLVGEAGCTPLLIKLLEAK-PNSVREVAAQAISSLV  469 (560)
Q Consensus       434 --------~~~i~~~g~i~~Lv~ll~s~-~~~v~~~A~~aL~~L~  469 (560)
                              -..+.++|.++.|+++..+. +..+..+|.-.|+.+.
T Consensus       319 ~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  319 VNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence                    12335677888888888765 6667777777777663

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00015  Score=76.94  Aligned_cols=333  Identities=17%  Similarity=0.169  Sum_probs=203.4

Q ss_pred             ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---------------
Q 008585          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS---------------  228 (560)
Q Consensus       164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---------------  228 (560)
                      ++.+.+.+..|+..|..+..-.-+.-..-.+......-+.-++++++++..+++..-++++..+-               
T Consensus       227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~  306 (859)
T KOG1241|consen  227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP  306 (859)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            46678889999999999987555443333344455556667788899999999999998876431               


Q ss_pred             --hHHHHH--hCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH----HHhccCChH
Q 008585          229 --CENWLV--SEGVLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI----EICQTGDSV  293 (560)
Q Consensus       229 --~~~~l~--~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv----~ll~~~~~~  293 (560)
                        +.....  -.+++|.|+++|...       ++.....|..||.-++.       .+....++..+    +-++++++.
T Consensus       307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr  379 (859)
T KOG1241|consen  307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWR  379 (859)
T ss_pred             chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchh
Confidence              011111  125678888888642       34455566666666543       12223334333    355678899


Q ss_pred             HHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHH-HhCCCHHHHHHhc
Q 008585          294 SQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV-VSEGGIRSLLAYL  371 (560)
Q Consensus       294 ~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i-~~~g~l~~L~~ll  371 (560)
                      -+..++.+++.+-..+ ..+-.-...+++|.++.++.++.- .++..+.++|+.++...++.+... .-.+.++.++.-+
T Consensus       380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl-~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL  458 (859)
T KOG1241|consen  380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL-WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL  458 (859)
T ss_pred             hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh-hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh
Confidence            9999999999887655 444444457899999999997665 889999999999998666433211 1244566666666


Q ss_pred             cC-CccHHHHHHHHHHhhc--c----cc-HHHHHhCCcHHHHHHHH-hc------CCHHHHHHHHHHHHHHhCC-hhHHH
Q 008585          372 DG-PLPQESAVGALRNLVG--S----VS-QEVLISLGFFPRLVHVL-KA------GSLGAQQAAASALCRVCTS-AEMKK  435 (560)
Q Consensus       372 ~~-~~~~~~a~~~L~nla~--~----~~-~~~l~~~~~i~~Lv~lL-~~------~~~~v~~~A~~aL~~La~~-~~~~~  435 (560)
                      .+ |.+..+++|++.+|+.  .    ++ +..... .+.+.++.-| ..      .+..++..|..+|..+..+ ++..-
T Consensus       459 ~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy  537 (859)
T KOG1241|consen  459 NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY  537 (859)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH
Confidence            55 8999999999999995  1    11 111111 3444444333 21      2368899999999999854 33322


Q ss_pred             HHHhcCCHHHHHH---------HHcc----CCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhH
Q 008585          436 LVGEAGCTPLLIK---------LLEA----KPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAK  501 (560)
Q Consensus       436 ~i~~~g~i~~Lv~---------ll~s----~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~  501 (560)
                      .+.. +.......         .+..    .-.+++..-+.+|..+... .+..++..  +..+..++++++++....+.
T Consensus       538 ~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~--d~iM~lflri~~s~~s~~v~  614 (859)
T KOG1241|consen  538 PMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS--DQIMGLFLRIFESKRSAVVH  614 (859)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH--HHHHHHHHHHHcCCccccch
Confidence            2211 11221111         2211    1234667777777777632 33333333  24457778888884322333


Q ss_pred             HHHHHHH
Q 008585          502 KYAVACL  508 (560)
Q Consensus       502 ~~a~~~L  508 (560)
                      +.++.++
T Consensus       615 e~a~laV  621 (859)
T KOG1241|consen  615 EEAFLAV  621 (859)
T ss_pred             HHHHHHH
Confidence            3333333

>TIGR02270 conserved hypothetical protein

Probab=98.31  E-value=0.00015  Score=74.96  Aligned_cols=210  Identities=16%  Similarity=0.026  Sum_probs=154.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS  235 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~  235 (560)
                      +..++..|...++.++..++.+|..+-           ..+..+.|+.+|++.++.++..++.+++...           
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence            677777887777778888887776531           2346788999999999999998887777622           


Q ss_pred             CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (560)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (560)
                      ....+.+..+|++.++.++..|+.+|..+-.          ...++.|...+.+.++.++..|+.++..+..        
T Consensus       146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--------  207 (410)
T TIGR02270       146 HDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--------  207 (410)
T ss_pred             cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence            2346789999999999999999999999743          3445678888999999999999999976643        


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHH
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEV  395 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~  395 (560)
                        ..++..+..+...... ........++... . ++         ..++.|..+++++.++..++.+++.+-.      
T Consensus       208 --~~A~~~l~~~~~~~g~-~~~~~l~~~lal~-~-~~---------~a~~~L~~ll~d~~vr~~a~~AlG~lg~------  267 (410)
T TIGR02270       208 --RLAWGVCRRFQVLEGG-PHRQRLLVLLAVA-G-GP---------DAQAWLRELLQAAATRREALRAVGLVGD------  267 (410)
T ss_pred             --HhHHHHHHHHHhccCc-cHHHHHHHHHHhC-C-ch---------hHHHHHHHHhcChhhHHHHHHHHHHcCC------
Confidence              2345666664443332 3333333333332 2 22         2378888889888899999999998863      


Q ss_pred             HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585          396 LISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       396 l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~  430 (560)
                         ...++.|+..+...  .+...|..++..++.-
T Consensus       268 ---p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       268 ---VEAAPWCLEAMREP--PWARLAGEAFSLITGM  297 (410)
T ss_pred             ---cchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence               45688888888644  3999999999999853

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=1.9e-05  Score=80.82  Aligned_cols=331  Identities=16%  Similarity=0.147  Sum_probs=207.6

Q ss_pred             hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh--hhH
Q 008585          194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMA  271 (560)
Q Consensus       194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~  271 (560)
                      -++.+++.+..+...+..+|-.|+..+.+++.-........-......+.++..+.+..++. ++..+.++-.+-  +..
T Consensus        82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESA  160 (675)
T ss_pred             HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccc
Confidence            34689999999999999999999999999987543222223334566666666666665544 556666664321  111


Q ss_pred             HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCch--hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHH---
Q 008585          272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE--VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN---  346 (560)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~--~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~---  346 (560)
                      ..|-=.+.+|.|-+.+...+|..|.....-|..|-..|+  ....+  ...++-|++.|.++++ +++..+=.+|.+   
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl--~~~ldGLf~~LsD~s~-eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL--PSLLDGLFNMLSDSSD-EVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc--hHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHH
Confidence            123223445555555556789999988888887765553  33333  4477888899998886 788666554444   


Q ss_pred             -HccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCH-HHHHHHH
Q 008585          347 -LTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAA  421 (560)
Q Consensus       347 -La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~  421 (560)
                       +.+.....    --...++.++.-+.+  +.++..|+.-|..+.. +...-...-.|++..++..+.+.++ .++..+.
T Consensus       238 eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~  313 (675)
T KOG0212|consen  238 EIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ  313 (675)
T ss_pred             HHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence             44332221    112235555555554  5678888888888877 2222222345666677777766554 3444333


Q ss_pred             H---HHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCch
Q 008585          422 S---ALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQN  498 (560)
Q Consensus       422 ~---aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~  498 (560)
                      .   .+..+...+.....+--...++.|.+.+.+...+.|..++.-+..|-...++.--.. .+.....|+.-|.++ .+
T Consensus       314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~-sd  391 (675)
T KOG0212|consen  314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDR-SD  391 (675)
T ss_pred             HHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCc-hh
Confidence            3   344444443332222112367888888888889999999999999976666644333 345567777777765 34


Q ss_pred             hhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchh
Q 008585          499 TAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG  540 (560)
Q Consensus       499 ~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~  540 (560)
                      .+...++..+.++|.+++..      |..+++..|+++=-++
T Consensus       392 ~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~  427 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKED  427 (675)
T ss_pred             HHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhh
Confidence            67889999999999877543      5566666666655443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=8.6e-05  Score=78.22  Aligned_cols=221  Identities=14%  Similarity=0.142  Sum_probs=160.1

Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQML  315 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i  315 (560)
                      .-+-++.+|++.-+-+|..|...+.++... |+.-+     .++|.|.+-|.++||.++.+|..+++.|+. +|.+.-. 
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-  218 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-  218 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence            356678899999999999999999999775 33322     234999999999999999999999999996 6666533 


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC---ccHHHHHHHHHH--hhc-
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP---LPQESAVGALRN--LVG-  389 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~---~~~~~a~~~L~n--la~-  389 (560)
                          .-|.+.+++.+.+.-.+....+...++|+--.|.+..     ..+++|..++.++   ++...++.++..  +.. 
T Consensus       219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence                3588999987654436888888899999876665543     3488899998773   233333333322  222 


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L  468 (560)
                      .....+.+ .-.+..|-.++.+.|+.++...+.+++.++. ++..-.+-     -+.+++.|..+++.+|.+|+..|.-+
T Consensus       290 ~~d~~asi-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  290 MSDHSASI-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGM  363 (877)
T ss_pred             CCCcHHHH-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence            11111111 1247778888889999999999999999984 34443332     56678899999999999999999988


Q ss_pred             cCCChhhHHHhh
Q 008585          469 VTLPQNCREVKR  480 (560)
Q Consensus       469 ~~~~~~~~~~~~  480 (560)
                       .+..|..++++
T Consensus       364 -VskkNl~eIVk  374 (877)
T KOG1059|consen  364 -VSKKNLMEIVK  374 (877)
T ss_pred             -hhhhhHHHHHH
Confidence             46667666654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.00059  Score=74.62  Aligned_cols=322  Identities=14%  Similarity=0.182  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHHHhcCCc-hHH----HHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH
Q 008585          211 RIREKTVTVICSLAESGS-CEN----WLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI  284 (560)
Q Consensus       211 ~v~~~A~~~L~~La~~~~-~~~----~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv  284 (560)
                      +-.+.++.+|.|+....+ ...    ...--|.++.+..+|.. +++.++.-|..++..++.+.++...++..|.+..|+
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence            345678899999876543 211    11223567777777765 478899999999999999999999999999999999


Q ss_pred             HHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC---hhHH------
Q 008585          285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN---ENLR------  355 (560)
Q Consensus       285 ~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~---~~~~------  355 (560)
                      .+|.+ -|..|..++.+|+.|++++++...-.+.|++..+..++-..+....+..++..++.+..+.   +..+      
T Consensus      1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred             HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence            99975 6889999999999999999999999999999888888776555578899999999987621   1111      


Q ss_pred             -----HHHHhCCCHHHHHHhccC----Cc------cHHHHHHHHHHhhcc------c-------cHH-------------
Q 008585          356 -----RSVVSEGGIRSLLAYLDG----PL------PQESAVGALRNLVGS------V-------SQE-------------  394 (560)
Q Consensus       356 -----~~i~~~g~l~~L~~ll~~----~~------~~~~a~~~L~nla~~------~-------~~~-------------  394 (560)
                           ..+++. +-+..+.++++    |+      .+...-..+..++..      .       .++             
T Consensus      1899 LP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1899 LPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred             chHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence                 111111 22555555543    21      233333344444320      0       000             


Q ss_pred             --------HH------------HhCCcHHHHHHHHhcCCH--HHHHHHHHHHHH-HhCChhHHHHHHhcCCHHHHHHHHc
Q 008585          395 --------VL------------ISLGFFPRLVHVLKAGSL--GAQQAAASALCR-VCTSAEMKKLVGEAGCTPLLIKLLE  451 (560)
Q Consensus       395 --------~l------------~~~~~i~~Lv~lL~~~~~--~v~~~A~~aL~~-La~~~~~~~~i~~~g~i~~Lv~ll~  451 (560)
                              .+            .-.+.++.+..+|...++  ..-..-..++.. +..++.....+..-|.+|.++..+.
T Consensus      1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred             cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence                    01            122345556666654332  222222223333 3345777888888899999999997


Q ss_pred             cCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC--ChhhHHHHHHcChhHH
Q 008585          452 AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP--SKKCKKLMISYGAIGY  529 (560)
Q Consensus       452 s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~--~~~~r~~i~~~g~i~~  529 (560)
                      ..+..+-..|..+|-.|+.+.-.++.+.. -..+..++..+....  .....++.++..+..  ....-.+..+.|.+++
T Consensus      2058 ~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~--~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpy 2134 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQP--SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPY 2134 (2235)
T ss_pred             hcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcc--hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHH
Confidence            66666668889999999877776666654 344556777776653  234467777776654  2245566678999999


Q ss_pred             HHHhhccC
Q 008585          530 LKKLSEMD  537 (560)
Q Consensus       530 L~~L~~~~  537 (560)
                      |.+|++..
T Consensus      2135 LL~LLd~~ 2142 (2235)
T KOG1789|consen 2135 LLQLLDSS 2142 (2235)
T ss_pred             HHHHhccc
Confidence            99998754

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.001  Score=71.02  Aligned_cols=293  Identities=15%  Similarity=0.145  Sum_probs=167.2

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      +..+++..++...+.+.++|.-.-..|.+.+.+++.-.     -=-|..+.+-|+.+++.+|..|+++|..+--      
T Consensus        69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv------  137 (968)
T KOG1060|consen   69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV------  137 (968)
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch------
Confidence            55578888888899999999888888999988766321     1237788889999999999999888876532      


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-  309 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-  309 (560)
                      .++..=++-.+-+...+.++-+|..|+.++-+| +.+++.+.++.     ..+-.+|.+.+|.+...|+.+.-.+|.+. 
T Consensus       138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl  212 (968)
T KOG1060|consen  138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL  212 (968)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH
Confidence            222111222333445566788888888888888 44555554443     23334444444443333333333222100 


Q ss_pred             -----h---hH-----------------------HHHHhc----------C------------------------cHHHH
Q 008585          310 -----E---VR-----------------------QMLAEE----------G------------------------IVSVM  324 (560)
Q Consensus       310 -----~---~~-----------------------~~i~e~----------g------------------------~v~~L  324 (560)
                           .   .|                       ..+.+.          |                        .+...
T Consensus       213 dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~st  292 (968)
T KOG1060|consen  213 DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQST  292 (968)
T ss_pred             HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhc
Confidence                 0   00                       000000          0                        11122


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHHHhhc--c----ccHH---
Q 008585          325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG--S----VSQE---  394 (560)
Q Consensus       325 ~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~nla~--~----~~~~---  394 (560)
                      -.++.+.+. .|...++.+.+.++-.++.       ...+.+|+++|.+ +.++...+..|..++.  +    +..+   
T Consensus       293 kpLl~S~n~-sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf  364 (968)
T KOG1060|consen  293 KPLLQSRNP-SVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFF  364 (968)
T ss_pred             cHHHhcCCc-HHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceE
Confidence            223345555 6777777777777754321       1125566666654 5555555555555543  0    0000   


Q ss_pred             ------------------HHHhCCc----HHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHc
Q 008585          395 ------------------VLISLGF----FPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE  451 (560)
Q Consensus       395 ------------------~l~~~~~----i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~  451 (560)
                                        .+..++-    ++-+-.++++.+..+...|..+|+.++.. ..     +...++..|+.++.
T Consensus       365 v~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Lls  439 (968)
T KOG1060|consen  365 VRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLS  439 (968)
T ss_pred             eecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHh
Confidence                              0112222    33334445555656777777888877743 11     12346778888888


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCh
Q 008585          452 AKPNSVREVAAQAISSLVTLPQ  473 (560)
Q Consensus       452 s~~~~v~~~A~~aL~~L~~~~~  473 (560)
                      +.+..|-..+...+..|....+
T Consensus       440 shde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  440 SHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             cccchhHHHHHHHHHHHHhhCh
Confidence            8888888888888888875443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.24  E-value=1.4e-05  Score=66.84  Aligned_cols=130  Identities=18%  Similarity=0.137  Sum_probs=109.5

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh
Q 008585          198 IAALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG  276 (560)
Q Consensus       198 v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~  276 (560)
                      +..|+.-. ...+.+.+++...-|.+++.++.+...+.+.++++.++..|...+....+.+...|+|++.++.++..|.+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e   97 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE   97 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence            44444333 24568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHH
Q 008585          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKL  327 (560)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~l  327 (560)
                      .++++.++..+.++...+...++.++..|+..+ ..+..+.....+.++...
T Consensus        98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen   98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence            999999999999888888999999999998744 556666555555555443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0033  Score=67.58  Aligned_cols=349  Identities=16%  Similarity=0.178  Sum_probs=198.3

Q ss_pred             hhhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585          149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (560)
                      .|-.+...++.-..++..++-.+.+|+-+...+....|+...     -.++..-++|.+.+..+...++..+..++...+
T Consensus       137 ~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~  211 (866)
T KOG1062|consen  137 PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISP  211 (866)
T ss_pred             HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence            444566667777778889999999999999999887775433     345666777877777888888888888877643


Q ss_pred             -hHHHHHhCCCHHHHHHhhhc---------------CCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccC-
Q 008585          229 -CENWLVSEGVLPPLIRLVES---------------GSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTG-  290 (560)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~-  290 (560)
                       .-..+.+  .++.++..|++               .+|.++....+.|+-|..++ +..+.+.     ..|-+++... 
T Consensus       212 ~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntd  284 (866)
T KOG1062|consen  212 DALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTD  284 (866)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhccc
Confidence             2222222  56666666652               27888888998888887754 3344332     2333344321 


Q ss_pred             -----ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHH
Q 008585          291 -----DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR  365 (560)
Q Consensus       291 -----~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~  365 (560)
                           ...+...+..++..+-.+++.+..     ++..+-++|.+.+. .+|+-++..|......++..-+.-     =.
T Consensus       285 sskN~GnAILYE~V~TI~~I~~~~~Lrvl-----ainiLgkFL~n~d~-NirYvaLn~L~r~V~~d~~avqrH-----r~  353 (866)
T KOG1062|consen  285 SSKNAGNAILYECVRTIMDIRSNSGLRVL-----AINILGKFLLNRDN-NIRYVALNMLLRVVQQDPTAVQRH-----RS  353 (866)
T ss_pred             ccccchhHHHHHHHHHHHhccCCchHHHH-----HHHHHHHHhcCCcc-ceeeeehhhHHhhhcCCcHHHHHH-----HH
Confidence                 123445555555555444443322     35556666665554 566777776666666544322111     12


Q ss_pred             HHHHhccCC--ccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhH-------H
Q 008585          366 SLLAYLDGP--LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEM-------K  434 (560)
Q Consensus       366 ~L~~ll~~~--~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~-------~  434 (560)
                      .+++.+++|  .++..|+..+..|....+...     .+..|+.+|.+.+++.+...+.-+..++..  |+.       -
T Consensus       354 tIleCL~DpD~SIkrralELs~~lvn~~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml  428 (866)
T KOG1062|consen  354 TILECLKDPDVSIKRRALELSYALVNESNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTML  428 (866)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhccccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            355566653  346666666666665444332     355666677666766666666666666522  221       1


Q ss_pred             HHHHh------cCCHHHHHHHHccC-------------------------CHHHHHHHHHHHHHhc---CCChhh--HHH
Q 008585          435 KLVGE------AGCTPLLIKLLEAK-------------------------PNSVREVAAQAISSLV---TLPQNC--REV  478 (560)
Q Consensus       435 ~~i~~------~g~i~~Lv~ll~s~-------------------------~~~v~~~A~~aL~~L~---~~~~~~--~~~  478 (560)
                      +.+..      ...+..++.++.+.                         .+.+...|.|+|..-.   .+..+.  ...
T Consensus       429 ~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~  508 (866)
T KOG1062|consen  429 KVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIK  508 (866)
T ss_pred             HHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCc
Confidence            11111      12445555555433                         1223344555555443   111111  111


Q ss_pred             hhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhCC-----ChhhHHHHHHcC
Q 008585          479 KRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSP-----SKKCKKLMISYG  525 (560)
Q Consensus       479 ~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~-----~~~~r~~i~~~g  525 (560)
                      +.++..+..+..++.+. ...+.+.|++.++.-|+.     .+..++.|.+.+
T Consensus       509 vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~  561 (866)
T KOG1062|consen  509 VTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYK  561 (866)
T ss_pred             CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence            22334556666666554 234689999999988773     334555554443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.12  E-value=1.3e-05  Score=67.08  Aligned_cols=130  Identities=15%  Similarity=0.087  Sum_probs=110.1

Q ss_pred             HHHHHHhh-hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585          239 LPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (560)
Q Consensus       239 i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (560)
                      +..|+.-. ...+.+.++....-|.|.+-+|-|-..+.+.+++..++.-+..++..++..+.+.|+|+|.++.+.+.|.+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e   97 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE   97 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence            44555433 34588899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHH
Q 008585          318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA  369 (560)
Q Consensus       318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~  369 (560)
                      .+++|.++..+.++.. .+...++.++..|+..+...|..+....+++.+.+
T Consensus        98 a~g~plii~~lssp~e-~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r  148 (173)
T KOG4646|consen   98 ALGLPLIIFVLSSPPE-ITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR  148 (173)
T ss_pred             hcCCceEEeecCCChH-HHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence            9999999999988886 78889999999999877776776665544444433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.10  E-value=0.0011  Score=68.32  Aligned_cols=355  Identities=16%  Similarity=0.199  Sum_probs=208.8

Q ss_pred             ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHH-------
Q 008585          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWL-------  233 (560)
Q Consensus       164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l-------  233 (560)
                      +..+.+.+..|.-.|..+..-.-+.-....+.-......+.+++++.++..+|+..-+.+++.+-   ....-       
T Consensus       231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~q  310 (858)
T COG5215         231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQ  310 (858)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchh
Confidence            45677888888888888876555554555555556667788899999999999998888876431   11100       


Q ss_pred             -------HhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHH----hccCChHHH
Q 008585          234 -------VSEGVLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI----CQTGDSVSQ  295 (560)
Q Consensus       234 -------~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l----l~~~~~~~~  295 (560)
                             .-.+++|.|+.+|...       ++.....|..||.-.+...       ....+++.+.+    ++++++.-+
T Consensus       311 n~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~-------gd~i~~pVl~FvEqni~~~~w~nr  383 (858)
T COG5215         311 NHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK-------GDKIMRPVLGFVEQNIRSESWANR  383 (858)
T ss_pred             hcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh-------hhHhHHHHHHHHHHhccCchhhhH
Confidence                   0224789999999762       4455666777776665422       12223344444    456788889


Q ss_pred             HHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH-----HH
Q 008585          296 AAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS-----LL  368 (560)
Q Consensus       296 ~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~-----L~  368 (560)
                      ..+..+++.+-..+  .....++ ..++|.+.....++. ..++..+++|++.|+.+   ....+-..|-++.     +.
T Consensus       384 eaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~li  458 (858)
T COG5215         384 EAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC-LWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLI  458 (858)
T ss_pred             HHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce-eehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHh
Confidence            99999999987644  3344444 467888888887655 48999999999999853   3333434554333     33


Q ss_pred             HhccCCccHHHHHHHHHHhhc--cccHH--HHHhCCcHHHHHHHHh------cCCHHHHHHHHHHHHHHhCC-hh-HHHH
Q 008585          369 AYLDGPLPQESAVGALRNLVG--SVSQE--VLISLGFFPRLVHVLK------AGSLGAQQAAASALCRVCTS-AE-MKKL  436 (560)
Q Consensus       369 ~ll~~~~~~~~a~~~L~nla~--~~~~~--~l~~~~~i~~Lv~lL~------~~~~~v~~~A~~aL~~La~~-~~-~~~~  436 (560)
                      .+.+.|....++.|.+.|+..  +....  .-.-..+.+.++..|-      ..+...+..+..+|+.|... ++ ....
T Consensus       459 Gl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~  538 (858)
T COG5215         459 GLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDI  538 (858)
T ss_pred             hhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence            344668899999999999987  21110  0111234444444332      23456777777788776522 22 1111


Q ss_pred             HH-------h--cCCHHHHHHHHccC----CHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHH
Q 008585          437 VG-------E--AGCTPLLIKLLEAK----PNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKK  502 (560)
Q Consensus       437 i~-------~--~g~i~~Lv~ll~s~----~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~  502 (560)
                      +.       +  ..++..+-+.+...    .++++..-+..|..+... .++.+..  .+..+..++++|++..+..+..
T Consensus       539 ~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v--~D~lm~Lf~r~les~~~t~~~~  616 (858)
T COG5215         539 LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV--EDQLMELFIRILESTKPTTAFG  616 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH--HHHHHHHHHHHHhccCCchhhh
Confidence            10       0  12344444444322    234666666666666522 2222211  1123577788888874444444


Q ss_pred             HHHHHHHHhCCChhhHHHHHHcChhHHHHH
Q 008585          503 YAVACLASLSPSKKCKKLMISYGAIGYLKK  532 (560)
Q Consensus       503 ~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~  532 (560)
                      -...++.+|+.+-+-|-.-.-..++|||.+
T Consensus       617 dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~  646 (858)
T COG5215         617 DVYTAISALSTSLEERFEQYASKFIPYLTR  646 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            444555555543333333334455555553

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.005  Score=66.04  Aligned_cols=280  Identities=13%  Similarity=0.142  Sum_probs=189.2

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS  235 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~  235 (560)
                      -.+|...|.+.....+.+|++.+..+...+...      ....+..++...+.+.+++...---|...|+..+.-..+  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence            356778888888899999999888887654432      135677888888899999998888888888776532221  


Q ss_pred             CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHH
Q 008585          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQM  314 (560)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~  314 (560)
                        -|..+-+.|++.++-+|..|.++|..+-...-..-      .+-++-+...+..|.+|..|+-|+-.|=+ +++-+..
T Consensus       109 --SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI------~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  109 --SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPI------MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             --eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHH------HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence              47788889999999999999999888733211111      11233355567899999999999988854 4444443


Q ss_pred             HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc--
Q 008585          315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS--  390 (560)
Q Consensus       315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~--  390 (560)
                      +     +..+=.||.+.++ .|.-.|+.+...+|-+.   -+ ++ .+-...+.+++.+  ..-|...+..|..-|+.  
T Consensus       181 L-----~e~I~~LLaD~sp-lVvgsAv~AF~evCPer---ld-LI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l  249 (968)
T KOG1060|consen  181 L-----EEVIKKLLADRSP-LVVGSAVMAFEEVCPER---LD-LI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQL  249 (968)
T ss_pred             H-----HHHHHHHhcCCCC-cchhHHHHHHHHhchhH---HH-Hh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcC
Confidence            3     4555567777776 78899999999888532   12 22 2235666777655  44567777777777661  


Q ss_pred             --c-cHHHHH-hCC------------------------cHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCC
Q 008585          391 --V-SQEVLI-SLG------------------------FFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGC  442 (560)
Q Consensus       391 --~-~~~~l~-~~~------------------------~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~  442 (560)
                        + ...... ..|                        ++...-.+|.+.++.|...++.+.+.++-..+.      .++
T Consensus       250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i  323 (968)
T KOG1060|consen  250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKI  323 (968)
T ss_pred             CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHH
Confidence              1 100000 001                        122233456778899999999999999954322      345


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          443 TPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       443 i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      +++|+++|.+. .++|...+..+..++
T Consensus       324 ~kaLvrLLrs~-~~vqyvvL~nIa~~s  349 (968)
T KOG1060|consen  324 AKALVRLLRSN-REVQYVVLQNIATIS  349 (968)
T ss_pred             HHHHHHHHhcC-CcchhhhHHHHHHHH
Confidence            88999988754 567877777777775

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00022  Score=76.18  Aligned_cols=332  Identities=17%  Similarity=0.131  Sum_probs=204.5

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch-H
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC-E  230 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~-~  230 (560)
                      ....+.++...++.+++.++..++.....+-..++   ..+.+.|.++.|-.++.++++.+...|+.+|..+...... -
T Consensus       119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~  195 (734)
T KOG1061|consen  119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN  195 (734)
T ss_pred             HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence            45567788899999999999999888888865554   4566789999999999988999999999999999876542 1


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (560)
                      ......-.+..++..+...+...+.....++.+-.-.++ ....++     ..+...+.+.++.+...+..++.++...-
T Consensus       196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~-----~r~~p~Lqh~n~avvlsavKv~l~~~~~~  270 (734)
T KOG1061|consen  196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDIC-----ERLTPRLQHANSAVVLSAVKVILQLVKYL  270 (734)
T ss_pred             cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHH-----HHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence            111111234444555555555555555555544433322 233333     66667777778888888888888776532


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG  389 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~  389 (560)
                      ...........-+.++.++.+..  ++++.++.=+.-+....++.    .....---++++.+.--+...=+.++..++.
T Consensus       271 ~~~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~lil~~~p~~----~~~~~~~Ff~kynDPiYvK~eKleil~~la~  344 (734)
T KOG1061|consen  271 KQVNELLFKKVAPPLVTLLSSES--EIQYVALRNINLILQKRPEI----LKVEIKVFFCKYNDPIYVKLEKLEILIELAN  344 (734)
T ss_pred             HHHHHHHHHHhcccceeeecccc--hhhHHHHhhHHHHHHhChHH----HHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence            22223333445566777776655  57776666555555444431    1111111111111212345555666666665


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ..+..+     ++.-+...-..-+.+..+.+.+++++++...+-.     .+++..|++++..+-.-+...+...+..+.
T Consensus       345 ~~nl~q-----vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dil  414 (734)
T KOG1061|consen  345 DANLAQ-----VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDIL  414 (734)
T ss_pred             HhHHHH-----HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhh
Confidence            333322     3455555555667888899999999998542221     678999999998776666667788888887


Q ss_pred             CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      ..-++.-+-     .+..+..-+++-.+++.|.+.+.++..-+
T Consensus       415 RkyP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~  452 (734)
T KOG1061|consen  415 RKYPNKYES-----VVAILCENLDSLQEPEAKAALIWILGEYA  452 (734)
T ss_pred             hcCCCchhh-----hhhhhcccccccCChHHHHHHHHHHhhhh
Confidence            655554321     23444445554444556766666665443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.0025  Score=68.40  Aligned_cols=322  Identities=12%  Similarity=0.159  Sum_probs=175.9

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCC
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG  237 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g  237 (560)
                      +.++.+.+++--.|+-.--+..-++.++.+-...     .+..|.+=|++++..++-.|+.+|++++..+-.|.      
T Consensus        74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllL-----ltNslknDL~s~nq~vVglAL~alg~i~s~Emard------  142 (866)
T KOG1062|consen   74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLL-----LTNSLKNDLNSSNQYVVGLALCALGNICSPEMARD------  142 (866)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHH-----HHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHH------
Confidence            4455556666444443333333333333222111     23344445667778888899999999987654443      


Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQML  315 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i  315 (560)
                      +.|-+-++|+..++.+|.+|+.|..++-. .|+....|.     +....+|.+.+..+...+...+..++. +++.-..+
T Consensus       143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f  217 (866)
T KOG1062|consen  143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF  217 (866)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence            46788889999999999999999988865 355444443     455555555666666555555555554 34444444


Q ss_pred             HhcCcHHHHHHHhhc---------------CCchhHHHHHHHHHHHHccCChhHHHHHHh--------------CC----
Q 008585          316 AEEGIVSVMIKLLDC---------------GILLGSKEYAAECLQNLTASNENLRRSVVS--------------EG----  362 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~---------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~--------------~g----  362 (560)
                      .+  .++-|+..|+.               .++ .+|...++.|+-+..+++...+.+.+              .|    
T Consensus       218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dP-FLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL  294 (866)
T KOG1062|consen  218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDP-FLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL  294 (866)
T ss_pred             HH--HHHHHHHHHHHHhcCCCCCccCccCCCch-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence            43  44455554431               122 56666666666666554433322211              00    


Q ss_pred             --CHHHHHHhccCCccHHHHHHHHHHhhcc--ccHH-----H---H--HhCCc----HHHHHHHHhcCCHHHHHHHHHHH
Q 008585          363 --GIRSLLAYLDGPLPQESAVGALRNLVGS--VSQE-----V---L--ISLGF----FPRLVHVLKAGSLGAQQAAASAL  424 (560)
Q Consensus       363 --~l~~L~~ll~~~~~~~~a~~~L~nla~~--~~~~-----~---l--~~~~~----i~~Lv~lL~~~~~~v~~~A~~aL  424 (560)
                        .+..+..+-.++..++.|+.+|+.+-.+  .+.+     .   +  .+...    -..+++.|++.|+.+++.|.+.+
T Consensus       295 YE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs  374 (866)
T KOG1062|consen  295 YECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS  374 (866)
T ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence              1222333333356677777777776651  1111     0   0  01111    23456666677777777777777


Q ss_pred             HHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHH
Q 008585          425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY  503 (560)
Q Consensus       425 ~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~  503 (560)
                      ..|......+ .|     ++.|+.+|.+.+++.+...+.-++.++ ...++.+      ..+..+...+.... +-++.-
T Consensus       375 ~~lvn~~Nv~-~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~------W~idtml~Vl~~aG-~~V~~d  441 (866)
T KOG1062|consen  375 YALVNESNVR-VM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKR------WHIDTMLKVLKTAG-DFVNDD  441 (866)
T ss_pred             HHHhccccHH-HH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch------hHHHHHHHHHHhcc-cccchh
Confidence            7766443322 22     555677776667777777777677776 2233222      22455666665542 234555


Q ss_pred             HHHHHHHh
Q 008585          504 AVACLASL  511 (560)
Q Consensus       504 a~~~L~~L  511 (560)
                      .+..+..|
T Consensus       442 v~~nll~L  449 (866)
T KOG1062|consen  442 VVNNLLRL  449 (866)
T ss_pred             hHHHHHHH
Confidence            55544433

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.001  Score=68.65  Aligned_cols=310  Identities=18%  Similarity=0.183  Sum_probs=190.1

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh----------------------HHH-----------HHHhhC-C-
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE----------------------KNV-----------LAVMGR-S-  196 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~----------------------~~~-----------~~i~~~-g-  196 (560)
                      ....+++.+.+....+..++..|++++.++++-..                      .++           +.++.+ . 
T Consensus        82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~  161 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS  161 (675)
T ss_pred             HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence            45557777777777777777777777777653211                      110           122211 1 


Q ss_pred             --CHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh----hC
Q 008585          197 --NIAALVQLLTA----TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL----SM  266 (560)
Q Consensus       197 --~v~~Lv~lL~~----~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L----a~  266 (560)
                        .++.++.+|+.    .++..|..-+.-|..|-..++..-.-.-...++.|.++|.+.+.+++..+-.++.++    ..
T Consensus       162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s  241 (675)
T KOG0212|consen  162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS  241 (675)
T ss_pred             ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence              14455555543    356777777777776655554221112234678888999999999998777666555    32


Q ss_pred             ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHH---
Q 008585          267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAEC---  343 (560)
Q Consensus       267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~---  343 (560)
                      +|+..   --...++.++..+.++++.++..|..-+.....-++..-...-.|++..++..+.+.+...+++.+...   
T Consensus       242 ~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~  318 (675)
T KOG0212|consen  242 SPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL  318 (675)
T ss_pred             Ccccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence            33221   113456888899999999999888766665554322222222255666666666655542355554433   


Q ss_pred             HHHHccCChhHHHHHHh-CCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 008585          344 LQNLTASNENLRRSVVS-EGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQA  419 (560)
Q Consensus       344 L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~  419 (560)
                      |..+... +...+. ++ ...++.+.+++.+  ...+..++.-+..+-. ..++-........+.|+..|.+.+.+|...
T Consensus       319 l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~  396 (675)
T KOG0212|consen  319 LLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLL  396 (675)
T ss_pred             HHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHH
Confidence            3333332 211112 22 2246677777765  4567788877777766 455555566778899999999999999999


Q ss_pred             HHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       420 A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      +...+.++|.+++....   ..++..|+++......-+..++.-.+..||
T Consensus       397 ~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC  443 (675)
T KOG0212|consen  397 ALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC  443 (675)
T ss_pred             HHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence            99999999987544322   123445555555555556777888888887

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.04  E-value=0.0014  Score=67.65  Aligned_cols=287  Identities=13%  Similarity=0.124  Sum_probs=173.2

Q ss_pred             HHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHH
Q 008585          161 ARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP  240 (560)
Q Consensus       161 ~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~  240 (560)
                      ..|.....-+..++++.+..++.++-..  ...+ ..+..|-.+|+++....|-.|+++|..|+...+.+-.+.+    +
T Consensus       271 ~wls~k~emV~lE~Ar~v~~~~~~nv~~--~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN----~  343 (898)
T COG5240         271 SWLSDKFEMVFLEAARAVCALSEENVGS--QFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN----K  343 (898)
T ss_pred             HHhcCcchhhhHHHHHHHHHHHHhccCH--HHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC----h
Confidence            3444444566777777777776544111  1111 2466677777787788888888888888875543222211    1


Q ss_pred             HHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcC
Q 008585          241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEG  319 (560)
Q Consensus       241 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g  319 (560)
                      -+=.++.+.+..+..+|...|.+-.. +++...++     ..+..+..+-+...+.-+..+++.|+- .|.-+..+    
T Consensus       344 evEsLIsd~Nr~IstyAITtLLKTGt-~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~----  413 (898)
T COG5240         344 EVESLISDENRTISTYAITTLLKTGT-EETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY----  413 (898)
T ss_pred             hHHHHhhcccccchHHHHHHHHHcCc-hhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH----
Confidence            22233445555555566555554322 33332222     333344444444455555555655553 23222222    


Q ss_pred             cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc--cccHHHHH
Q 008585          320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG--SVSQEVLI  397 (560)
Q Consensus       320 ~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~--~~~~~~l~  397 (560)
                       +..|...|.+....+.+..+..++..+....+..++.+     ++.|..++++....+.++++|+-|..  +....   
T Consensus       414 -l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~---  484 (898)
T COG5240         414 -LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYHQITVRILGILGREGPRAKT---  484 (898)
T ss_pred             -HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC---
Confidence             33444444332223788888889888888777666544     77888888888888888888888887  22211   


Q ss_pred             hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCCh---hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChh
Q 008585          398 SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA---EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN  474 (560)
Q Consensus       398 ~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~---~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~  474 (560)
                      -..++.++.+-+--.+.-++..|..+|..++-+.   -..+     .+...|-+.+...+.++|+.|..+|.++- ..+.
T Consensus       485 P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRclnD~DdeVRdrAsf~l~~~~-~~da  558 (898)
T COG5240         485 PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLNDQDDEVRDRASFLLRNMR-LSDA  558 (898)
T ss_pred             cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhhcccHHHHHHHHHHHHhhh-hhhh
Confidence            1235666666665678889999999999998651   1222     23556778888999999999999999994 4444


Q ss_pred             hHHHh
Q 008585          475 CREVK  479 (560)
Q Consensus       475 ~~~~~  479 (560)
                      +..++
T Consensus       559 ~~pl~  563 (898)
T COG5240         559 CEPLF  563 (898)
T ss_pred             hhccc
Confidence            44433

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.03  E-value=0.0027  Score=64.92  Aligned_cols=228  Identities=17%  Similarity=0.090  Sum_probs=157.7

Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQML  315 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (560)
                      ..+.+..++-+++..++..+.++++.+..+++....+.+.+.--.++.-+..  ....=|..|...++.+...++..+. 
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-  104 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-  104 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence            4455554555555999999999999999999888888887765555555543  2344567888888777654322222 


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-ccc
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVS  392 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~  392 (560)
                      .-.|.+..++.+.++.++ ..+..|+++|++++-.++.   .+++.||+..+++.+-+  .+..+..+.++..+.. +..
T Consensus       105 ~~~~vvralvaiae~~~D-~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDD-RLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence            246789999999999887 8999999999999998874   57899999999999865  2456677777777776 444


Q ss_pred             HHHHHhCCcHHHHHHHHhcC-------CH--HHHHHHHHHHHHHhCC-hhHHHHHHhc-CCHHHHHHHHccCCHHHHHHH
Q 008585          393 QEVLISLGFFPRLVHVLKAG-------SL--GAQQAAASALCRVCTS-AEMKKLVGEA-GCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~-------~~--~v~~~A~~aL~~La~~-~~~~~~i~~~-g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                      ++-+...--++.++.-..+.       +.  +.-+.+..++..+-++ +..--.-.+. .+++.|+..+..+++++|...
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I  260 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI  260 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence            43332222255555443322       22  3455666677666554 3222111122 568899999999999999999


Q ss_pred             HHHHHHhcC
Q 008585          462 AQAISSLVT  470 (560)
Q Consensus       462 ~~aL~~L~~  470 (560)
                      ...+..+..
T Consensus       261 ldll~dllr  269 (371)
T PF14664_consen  261 LDLLFDLLR  269 (371)
T ss_pred             HHHHHHHHC
Confidence            999999984

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=2.4e-05  Score=79.68  Aligned_cols=270  Identities=17%  Similarity=0.162  Sum_probs=177.4

Q ss_pred             HHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh
Q 008585          190 LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA  268 (560)
Q Consensus       190 ~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~  268 (560)
                      ..+.+...+++|+++|+.++..+.--+...++++.-. +..+..+.+.|.+..++.++.+.+...|....|.++++..+.
T Consensus       425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync  504 (743)
T COG5369         425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence            3445667899999999997766666677777777654 457889999999999999999999999999999999997764


Q ss_pred             hh--HHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC----chhHHHHHhcC----cHHHHHHHhhcCCchhHHH
Q 008585          269 EM--ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV----PEVRQMLAEEG----IVSVMIKLLDCGILLGSKE  338 (560)
Q Consensus       269 ~~--~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~----~~~~~~i~e~g----~v~~L~~lL~~~~~~~v~~  338 (560)
                      ++  +-.+.+.-|+..+++++.++...++..+...|+|+..+    ++.+..+....    ....+++-++..++..+++
T Consensus       505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            33  55777888999999999999999999999999999752    23333333322    3344555556666644444


Q ss_pred             HHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--------C-----ccHHHHHHHHHHhhccccHHHHHhCCcHHH
Q 008585          339 YAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------P-----LPQESAVGALRNLVGSVSQEVLISLGFFPR  404 (560)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--------~-----~~~~~a~~~L~nla~~~~~~~l~~~~~i~~  404 (560)
                       .+-.|.+++..++..+..+.+ ...+..+..++..        |     .+.-+-.....++..+        .+...+
T Consensus       585 -~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~--------~d~f~r  655 (743)
T COG5369         585 -GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN--------SDKFKR  655 (743)
T ss_pred             -hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc--------cccccc
Confidence             477788888878887777664 4455555555532        1     0111111222222210        011111


Q ss_pred             HHH------HHhc----CCHHHHHHHHHHHHHHhCC----------hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 008585          405 LVH------VLKA----GSLGAQQAAASALCRVCTS----------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA  464 (560)
Q Consensus       405 Lv~------lL~~----~~~~v~~~A~~aL~~La~~----------~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~a  464 (560)
                      ++.      ..+.    ++.+.-.+-.|.+.|+.-.          .+-.+.+.+.|.-+.|+++-...++.+|+.+-.+
T Consensus       656 ~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~ta  735 (743)
T COG5369         656 LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTA  735 (743)
T ss_pred             ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHH
Confidence            111      1121    2355666667776666422          1334455556666666665566777999999999


Q ss_pred             HHHh
Q 008585          465 ISSL  468 (560)
Q Consensus       465 L~~L  468 (560)
                      |.++
T Consensus       736 L~~l  739 (743)
T COG5369         736 LENL  739 (743)
T ss_pred             HHhh
Confidence            9887

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=0.00023  Score=77.94  Aligned_cols=217  Identities=14%  Similarity=0.196  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhcc--
Q 008585          214 EKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT--  289 (560)
Q Consensus       214 ~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~--  289 (560)
                      ..|+..|+.+-.-.. ....-..-|++|.++++|++.-.+++-.-+-+..++ +.++.++..+++.+|-...+..+..  
T Consensus       488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~  567 (1387)
T KOG1517|consen  488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ  567 (1387)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence            344444444444444 445556789999999999999888888777777776 6678888899998888888888865  


Q ss_pred             -CChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHH
Q 008585          290 -GDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSL  367 (560)
Q Consensus       290 -~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L  367 (560)
                       -+++-|..|+.+|..+.. .+-.++...+.+.+...+..++++...-.+..++-||+.|-.+.+..|-.=.+.++.+.|
T Consensus       568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL  647 (1387)
T KOG1517|consen  568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL  647 (1387)
T ss_pred             CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence             245889999999999986 456677788889999999999986322689999999999999888887777788999999


Q ss_pred             HHhccC--CccHHHHHHHHHHhhcc------ccHHH-----------HHhCCcHH----HHHHHHhcCCHHHHHHHHHHH
Q 008585          368 LAYLDG--PLPQESAVGALRNLVGS------VSQEV-----------LISLGFFP----RLVHVLKAGSLGAQQAAASAL  424 (560)
Q Consensus       368 ~~ll~~--~~~~~~a~~~L~nla~~------~~~~~-----------l~~~~~i~----~Lv~lL~~~~~~v~~~A~~aL  424 (560)
                      ...+.+  +++|..|+.+|+.+...      +....           ...+..+.    .++.+++.+++-++.+.+.+|
T Consensus       648 ~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~l  727 (1387)
T KOG1517|consen  648 ILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVAL  727 (1387)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHH
Confidence            999976  78999999999998761      11111           11122222    667777888999999999999


Q ss_pred             HHHhCC
Q 008585          425 CRVCTS  430 (560)
Q Consensus       425 ~~La~~  430 (560)
                      ..++..
T Consensus       728 s~~~~g  733 (1387)
T KOG1517|consen  728 SHFVVG  733 (1387)
T ss_pred             HHHHHh
Confidence            988744

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0036  Score=62.85  Aligned_cols=254  Identities=19%  Similarity=0.168  Sum_probs=182.0

Q ss_pred             HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC------hhhH----HHHHhCCChHHHH
Q 008585          215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS------AEMA----RAIVGHGGVRPLI  284 (560)
Q Consensus       215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~------~~~~----~~l~~~g~i~~Lv  284 (560)
                      ..+.-+..+|..|+.-..+++.++++.|+.+|...+.++...+...|..|+..      .+.+    .++++.++++.|+
T Consensus       103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            34556677888888888999999999999999999999999999999999752      1222    4566788888888


Q ss_pred             HHhccCC------hHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHHH
Q 008585          285 EICQTGD------SVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRR  356 (560)
Q Consensus       285 ~ll~~~~------~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~~  356 (560)
                      .-+..-+      -.....+...+-|+.. .++++..+++.|.+..|+.-+. .......+.+|.++|.-+-..+..++.
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            8775322      2345677888889886 5689999999999888887444 323236788999999999887777777


Q ss_pred             HHHhCCCHHHHHHhcc-----CC---ccHHHH---HHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 008585          357 SVVSEGGIRSLLAYLD-----GP---LPQESA---VGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL  424 (560)
Q Consensus       357 ~i~~~g~l~~L~~ll~-----~~---~~~~~a---~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL  424 (560)
                      ......|+..+++-+.     +|   +-++..   ..+|+.+.. +.+++.+....++....-+++. ....+..+..+|
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL  341 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL  341 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence            7778889999988773     22   234444   444444444 6788888877777766666665 444566677788


Q ss_pred             HHHhCC---hhHHHHHHhcCCHHHHHHHHc-c---------CCHHHHHHHHHHHHHhc
Q 008585          425 CRVCTS---AEMKKLVGEAGCTPLLIKLLE-A---------KPNSVREVAAQAISSLV  469 (560)
Q Consensus       425 ~~La~~---~~~~~~i~~~g~i~~Lv~ll~-s---------~~~~v~~~A~~aL~~L~  469 (560)
                      -....+   .+++..+++.+|+..+..+.. .         ...+.-+..+..|+++.
T Consensus       342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~  399 (536)
T KOG2734|consen  342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL  399 (536)
T ss_pred             HHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence            776655   367888888877777776654 1         11234455666666665

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.95  E-value=0.0019  Score=66.77  Aligned_cols=303  Identities=15%  Similarity=0.128  Sum_probs=183.6

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCCh
Q 008585          203 QLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGV  280 (560)
Q Consensus       203 ~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i  280 (560)
                      +-+++++..-++.|+.+++.+-..+.  ++..++. ..+|.+...+.+....++..++||+..++.+-  ...+-..|-+
T Consensus       373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl  449 (858)
T COG5215         373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHL  449 (858)
T ss_pred             HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccc
Confidence            44667789999999999999987664  5666654 47899999999888889999999999997531  1222223333


Q ss_pred             HHHHHHhc---cCChHHHHHHHHHHHHhcCC-chh----HHHHHh--cCcHHHHHHHhh--cCCchhHHHHHHHHHHHHc
Q 008585          281 RPLIEICQ---TGDSVSQAAAACTLKNISAV-PEV----RQMLAE--EGIVSVMIKLLD--CGILLGSKEYAAECLQNLT  348 (560)
Q Consensus       281 ~~Lv~ll~---~~~~~~~~~a~~aL~nLa~~-~~~----~~~i~e--~g~v~~L~~lL~--~~~~~~v~~~a~~~L~~La  348 (560)
                      +..+..+-   ...|....+++|...|+..+ ++.    -..+..  ..++..|++--+  ..+. ..|..+..+|+.+.
T Consensus       450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~-n~R~s~fsaLgtli  528 (858)
T COG5215         450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES-NLRVSLFSALGTLI  528 (858)
T ss_pred             cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHH
Confidence            43333332   14677888999999998752 111    111111  123333333322  1222 56777777777665


Q ss_pred             cCCh-hHHHHHHh---------CCCHHHHHHhccC------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHh
Q 008585          349 ASNE-NLRRSVVS---------EGGIRSLLAYLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLK  410 (560)
Q Consensus       349 ~~~~-~~~~~i~~---------~g~l~~L~~ll~~------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~  410 (560)
                      ...+ .....+..         ...+..+-+.+.-      .+++.+-+++|..+.+  ....+. ++...+..+++.|+
T Consensus       529 ~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~le  607 (858)
T COG5215         529 LICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILE  607 (858)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHh
Confidence            5222 22222211         0012222222211      2345566666666665  111111 23346788888998


Q ss_pred             cCC-HHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHH
Q 008585          411 AGS-LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNL  488 (560)
Q Consensus       411 ~~~-~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~L  488 (560)
                      +.+ ..+-.....++++|+.+-+-+-.-.-..++|.|.+-+...+..+...|......|+.. ..+...+  .+..+..|
T Consensus       608 s~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~L  685 (858)
T COG5215         608 STKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSL  685 (858)
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHH
Confidence            864 5566778889999987633332222367899999999877777889999999999832 2222222  23456899


Q ss_pred             HhccCCC-CchhhHHHHHHHHHHhC
Q 008585          489 VQLLDPS-PQNTAKKYAVACLASLS  512 (560)
Q Consensus       489 v~lL~~~-~~~~~~~~a~~~L~~L~  512 (560)
                      +|.|.++ .+..+|-..++++..++
T Consensus       686 vQ~lss~~~~R~lKPaiLSvFgDIA  710 (858)
T COG5215         686 VQCLSSEATHRDLKPAILSVFGDIA  710 (858)
T ss_pred             HHHhcChhhccccchHHHHHHHHHH
Confidence            9999987 33457777888887665

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0005  Score=73.59  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=115.3

Q ss_pred             hhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH
Q 008585          151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE  230 (560)
Q Consensus       151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~  230 (560)
                      ++-...++.+...++.|.+.|.-+--.+.+.+...|...     .+.+..++.=.+++++.+|..|++.++.+.-..-  
T Consensus        46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i--  118 (734)
T KOG1061|consen   46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKI--  118 (734)
T ss_pred             chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHH--
Confidence            345568889999999999988888888888888777432     2457777777777889999999988877654321  


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                          ..-.+.++.+.++++++.+|..++.+..++-.  ...+.....|.++.|-.++.+.+|.+...|..+|..+..
T Consensus       119 ----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  119 ----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE  189 (734)
T ss_pred             ----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence                12257899999999999999999999988843  445566678999999999999999999999999999874

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0082  Score=63.63  Aligned_cols=351  Identities=15%  Similarity=0.135  Sum_probs=199.8

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCch
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSC  229 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~  229 (560)
                      ++..+..+..-|.+.++-...-|+..+.++-.  .+++..+.  ..++   ++|-+++  +-++..|+-+|..|-...+ 
T Consensus       109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp-  180 (938)
T KOG1077|consen  109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP-  180 (938)
T ss_pred             HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc-
Confidence            34445555555666666666666666666532  22222221  2233   5565554  6677777777766655433 


Q ss_pred             HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hh-hHHHHHhCCChHHHHHHhcc-------------CChHH
Q 008585          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AE-MARAIVGHGGVRPLIEICQT-------------GDSVS  294 (560)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~-~~~~l~~~g~i~~Lv~ll~~-------------~~~~~  294 (560)
                       +.+-..+-...++.+|.+.+..+...+...+..|+.. ++ .+..+  .-++..|..++..             +.|=+
T Consensus       181 -Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL  257 (938)
T KOG1077|consen  181 -DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWL  257 (938)
T ss_pred             -cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHH
Confidence             1111224678899999998888878888888888664 32 22222  1223333333322             23556


Q ss_pred             HHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCc-hhHH-----HHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585          295 QAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGIL-LGSK-----EYAAECLQNLTASNENLRRSVVSEGGIRS  366 (560)
Q Consensus       295 ~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~-~~v~-----~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (560)
                      +...++.|-+.-.  ++..+..+.+  ++..++...+.... ..++     ...+.-.-+++.+-+.-.+.+.+  .+..
T Consensus       258 ~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~  333 (938)
T KOG1077|consen  258 QVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQ  333 (938)
T ss_pred             HHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHH
Confidence            7777777777743  3345555443  33444433332110 1121     11222223333322221223332  3667


Q ss_pred             HHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCC
Q 008585          367 LLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTSAEMKKLVGEAGC  442 (560)
Q Consensus       367 L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~  442 (560)
                      |-+++.+  +.+|.-++..+..|+. ....+.+...  .+.++..|+ ..|..+++.|+..|..||.- ++.+.+     
T Consensus       334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~I-----  405 (938)
T KOG1077|consen  334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQI-----  405 (938)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHH-----
Confidence            7777766  6788889999988888 3444544433  888999998 68999999999999999864 344444     


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhcC-CChhh-------HHH------hhhCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585          443 TPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNC-------REV------KRDDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (560)
Q Consensus       443 i~~Lv~ll~s~~~~v~~~A~~aL~~L~~-~~~~~-------~~~------~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L  508 (560)
                      +..|++-+.+.+..+|+.-.-=.+-|+. ...+-       -.+      ..+++..-+++|..-.+  ++++.|+..-+
T Consensus       406 V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn--edlq~yaak~~  483 (938)
T KOG1077|consen  406 VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN--EDLQGYAAKRL  483 (938)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc--hhhhHHHHHHH
Confidence            4556667766777777654444444441 11110       000      11233344555555543  35788888888


Q ss_pred             HHhCCChhhHHHHHHcChh
Q 008585          509 ASLSPSKKCKKLMISYGAI  527 (560)
Q Consensus       509 ~~L~~~~~~r~~i~~~g~i  527 (560)
                      ...-..+.+++.|++.|+.
T Consensus       484 fe~Lq~~a~hE~mVKvggy  502 (938)
T KOG1077|consen  484 FEYLQKPACHENMVKVGGY  502 (938)
T ss_pred             HHHHhhhHHHHHHHHhhhh
Confidence            8777788899999887764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.88  E-value=0.0003  Score=72.88  Aligned_cols=277  Identities=18%  Similarity=0.155  Sum_probs=174.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHH-
Q 008585          197 NIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-  272 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~-  272 (560)
                      .|..++.+|++..+.+|++|+...+.|+.--.   --+.+...|  ..|..-|....+++.-....+++.+........ 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            35667788999999999999999988875321   112333333  235666777788888877777777754322211 


Q ss_pred             HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-h---hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (560)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~---~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La  348 (560)
                      +---.|.+|.|..+|++....++.+....+..++.+. +   .++.|   .+---|+..|++-+. +++.+|...++.++
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nK-eiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNK-EIRRNATETFGCIS  758 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhH-HHHHhhhhhhhhHH
Confidence            1113578899999999999999999998888888633 2   33333   234456777777775 89999999999887


Q ss_pred             cCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       349 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      ..-          |--+.|..++++-++++.-.++-..++-.-..+.-.-..++|.|+.--..++..||.-.+.+++.+-
T Consensus       759 ~ai----------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF  828 (975)
T COG5181         759 RAI----------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF  828 (975)
T ss_pred             hhc----------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence            521          1112233344443444333222222221000000001234555555555677899999999999887


Q ss_pred             CC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC
Q 008585          429 TS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS  495 (560)
Q Consensus       429 ~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~  495 (560)
                      ..  ...++++  .-..|.|-+.+...++.-|..|...+.+|+.+.+..-.    .+..-+|+.+|-++
T Consensus       829 eyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~----eda~IHLlNllwpN  891 (975)
T COG5181         829 EYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD----EDAAIHLLNLLWPN  891 (975)
T ss_pred             HHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc----HHHHHHHHHHhhhh
Confidence            54  3444554  34578888888889999999999999999977544221    12334555555544

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.87  E-value=2.2e-05  Score=52.74  Aligned_cols=41  Identities=39%  Similarity=0.570  Sum_probs=38.2

Q ss_pred             ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                      +++++..+++.|+++.|+.+++++++.++..|+++|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.87  E-value=0.004  Score=63.41  Aligned_cols=245  Identities=26%  Similarity=0.276  Sum_probs=170.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      .+..++..+.+.+...+..+...+..+-           ....++.+..++.+.++.+|..|+.+|+.+...        
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--------  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP--------  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence            4677888888888888888887754432           224689999999999999999999988876543        


Q ss_pred             hCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh------------HHHHHHHHH
Q 008585          235 SEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS------------VSQAAAACT  301 (560)
Q Consensus       235 ~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~------------~~~~~a~~a  301 (560)
                        ..++.++..+. +.+..+|..++++|..+-..          ..+.+++..+.+...            .++..+..+
T Consensus       105 --~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~  172 (335)
T COG1413         105 --EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA  172 (335)
T ss_pred             --hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence              35899999999 58999999999999998431          225677777776542            345555555


Q ss_pred             HHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585          302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES  379 (560)
Q Consensus       302 L~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~  379 (560)
                      |..+-          +...++.+...+.+... .++..+..+|+.+...+.         .....+...+.+  ..++..
T Consensus       173 l~~~~----------~~~~~~~l~~~l~~~~~-~vr~~Aa~aL~~~~~~~~---------~~~~~l~~~~~~~~~~vr~~  232 (335)
T COG1413         173 LGELG----------DPEAIPLLIELLEDEDA-DVRRAAASALGQLGSENV---------EAADLLVKALSDESLEVRKA  232 (335)
T ss_pred             HHHcC----------ChhhhHHHHHHHhCchH-HHHHHHHHHHHHhhcchh---------hHHHHHHHHhcCCCHHHHHH
Confidence            54443          34578888899988886 899999999999887641         224556666655  345666


Q ss_pred             HHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHH
Q 008585          380 AVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE  459 (560)
Q Consensus       380 a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~  459 (560)
                      ++..++.+-.         ...+..+...+...+..+...+...+...-.          ......+...+......++.
T Consensus       233 ~~~~l~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~  293 (335)
T COG1413         233 ALLALGEIGD---------EEAVDALAKALEDEDVILALLAAAALGALDL----------AEAALPLLLLLIDEANAVRL  293 (335)
T ss_pred             HHHHhcccCc---------chhHHHHHHHHhccchHHHHHHHHHhcccCc----------hhhHHHHHHHhhcchhhHHH
Confidence            6666666642         2346777888888877777666665552110          12345555566666667777


Q ss_pred             HHHHHHHHhc
Q 008585          460 VAAQAISSLV  469 (560)
Q Consensus       460 ~A~~aL~~L~  469 (560)
                      .+..++..+.
T Consensus       294 ~~~~~l~~~~  303 (335)
T COG1413         294 EAALALGQIG  303 (335)
T ss_pred             HHHHHHHhhc
Confidence            7777776664

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.86  E-value=0.0031  Score=68.76  Aligned_cols=335  Identities=16%  Similarity=0.144  Sum_probs=183.6

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--hHHHHH
Q 008585          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLV  234 (560)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~  234 (560)
                      +-++.+|  ++.-.+..|++++..++...-..-..-....+++.+...++......+...+.++-.|..+..  .-..+.
T Consensus       614 ~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~  691 (1233)
T KOG1824|consen  614 PILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL  691 (1233)
T ss_pred             HHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            3344444  566678888888888875332221112223457778888877667777777777777765432  111111


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh----------------------
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS----------------------  292 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~----------------------  292 (560)
                      + -++..+-.++...+..+-+.+..+|..+...++....-...-.++.++.+++++--                      
T Consensus       692 e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~  770 (1233)
T KOG1824|consen  692 E-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPD  770 (1233)
T ss_pred             H-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCC
Confidence            1 23455555666777888888888888888776666555556667777777765410                      


Q ss_pred             --------------------HHH-------HHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585          293 --------------------VSQ-------AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (560)
Q Consensus       293 --------------------~~~-------~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~  345 (560)
                                          .+.       ..++.+|...+. ++.+..     +...+..+...+....++..|.-.|+
T Consensus       771 l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~-----a~kl~~~~~s~~s~~~ikvfa~LslG  844 (1233)
T KOG1824|consen  771 LDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP-QKSKSL-----ATKLIQDLQSPKSSDSIKVFALLSLG  844 (1233)
T ss_pred             ccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc-ccchhH-----HHHHHHHHhCCCCchhHHHHHHhhhh
Confidence                                001       111222222221 011100     11111222222222255666666666


Q ss_pred             HHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc---cccHH----HH------------------H-
Q 008585          346 NLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQE----VL------------------I-  397 (560)
Q Consensus       346 ~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~---~~~~~----~l------------------~-  397 (560)
                      ++-...+..-.    .+.-..+++.+.+  .++...|..+|++++.   +..-.    .+                  . 
T Consensus       845 Elgr~~~~s~~----~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~  920 (1233)
T KOG1824|consen  845 ELGRRKDLSPQ----NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVS  920 (1233)
T ss_pred             hhccCCCCCcc----hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHH
Confidence            66553222110    1112234444544  3455566666666654   11100    00                  0 


Q ss_pred             -----hCCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 008585          398 -----SLGFFPRLVHVLK----AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (560)
Q Consensus       398 -----~~~~i~~Lv~lL~----~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~  467 (560)
                           -...++.+..+|-    +.....+-..+.+|+.|+.. +        ...+|.|-..+.++.+..|..+..+...
T Consensus       921 ~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~a~~~rs~vvsavKf  992 (1233)
T KOG1824|consen  921 ASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSEASNTRSSVVSAVKF  992 (1233)
T ss_pred             hccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCCCcchhhhhhheeee
Confidence                 0112333333332    23355666677777777643 3        2358888889999999999888888887


Q ss_pred             hcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585          468 LVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       468 L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                      ...+ ++.....++  ..+...+.++++++ -.+++.++.++.+.++++
T Consensus       993 sisd~p~~id~~lk--~~ig~fl~~~~dpD-l~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen  993 SISDQPQPIDPLLK--QQIGDFLKLLRDPD-LEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred             eecCCCCccCHHHH--HHHHHHHHHHhCCc-hhHHHHHHHHHHHHHccC
Confidence            7754 444455554  45667777888763 458889999999888765

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.86  E-value=3.4e-05  Score=51.84  Aligned_cols=41  Identities=29%  Similarity=0.452  Sum_probs=38.0

Q ss_pred             ChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008585          185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE  225 (560)
Q Consensus       185 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~  225 (560)
                      +++++..+++.|+++.|+++|+++++++++.|+++|++|+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788899999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0023  Score=64.23  Aligned_cols=231  Identities=17%  Similarity=0.201  Sum_probs=170.1

Q ss_pred             HHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC---------hhHHHHHHhCCCHHHHHH
Q 008585          299 ACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN---------ENLRRSVVSEGGIRSLLA  369 (560)
Q Consensus       299 ~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~---------~~~~~~i~~~g~l~~L~~  369 (560)
                      ..-+.-++..|+.-..+++.++|+.++.+|.+.+. ++....+..|..++..+         +..-..+++.++++.|++
T Consensus       105 IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt-DI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq  183 (536)
T KOG2734|consen  105 IQEMHVLATMPDLYPILVELNAVQSLLELLGHENT-DIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ  183 (536)
T ss_pred             HHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc-hhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence            34455677888999999999999999999999887 89999999999998621         134456667788888888


Q ss_pred             hccC--------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhCC-hhHHHH
Q 008585          370 YLDG--------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTS-AEMKKL  436 (560)
Q Consensus       370 ll~~--------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~La~~-~~~~~~  436 (560)
                      -++.        ......++..+-|+..  ++....+.+.|.+.+|+.-+...  -..-+..|...+.-+..+ .+++..
T Consensus       184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~  263 (536)
T KOG2734|consen  184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL  263 (536)
T ss_pred             HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence            8743        1235678888999987  66778888889999998866553  356778888999888766 558888


Q ss_pred             HHhcCCHHHHHHHHc---cC------CHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHH
Q 008585          437 VGEAGCTPLLIKLLE---AK------PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC  507 (560)
Q Consensus       437 i~~~g~i~~Lv~ll~---s~------~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~  507 (560)
                      +..-.++..+++-+.   ..      ..+.-+.--.+||.+...+.|+..|+. +.++.-..-++...  ...+..++.+
T Consensus       264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~K--k~sr~Salkv  340 (536)
T KOG2734|consen  264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLREK--KVSRGSALKV  340 (536)
T ss_pred             hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHHH--HHhhhhHHHH
Confidence            888888998888773   11      123556777888888889999999886 45555555555442  2356667778


Q ss_pred             HHHhCCCh---hhHHHHHHcChhHHHHHh
Q 008585          508 LASLSPSK---KCKKLMISYGAIGYLKKL  533 (560)
Q Consensus       508 L~~L~~~~---~~r~~i~~~g~i~~L~~L  533 (560)
                      |-.....+   .+...+++-+++.++-.+
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence            87555433   466777777777776644

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.83  E-value=0.00079  Score=71.32  Aligned_cols=276  Identities=17%  Similarity=0.150  Sum_probs=174.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch---HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh-HHH
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARA  273 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~-~~~  273 (560)
                      +..++..|++.++.+|++|+..++.++.--..   .+.+...|+  .|...|....+++.-....++..+.....- +..
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence            44566678888999999999999999863321   223333342  466788888888887777776666432211 111


Q ss_pred             HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-ch---hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PE---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~---~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ---.+.+|.|..+|++....++.++...+..++.. ++   .++-|   .+---|+++|+.-.. +++.++...++.|+.
T Consensus       879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK-~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKK-EIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence            11246679999999999999999999999999863 33   23333   234456677776665 899999999998875


Q ss_pred             CChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585          350 SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (560)
Q Consensus       350 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~  429 (560)
                      .-          |--+.|..+|++-++++.-.++-..++-.-..+.-.-..++|.|++--+.++..||.-.+.+++.|-.
T Consensus       955 aI----------GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fe 1024 (1172)
T KOG0213|consen  955 AI----------GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFE 1024 (1172)
T ss_pred             hc----------CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHH
Confidence            21          11233444455544444333322222210000000012346666665566788999999999999874


Q ss_pred             C--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC
Q 008585          430 S--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS  495 (560)
Q Consensus       430 ~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~  495 (560)
                      .  +-.++++  .-..|.|-+.+...+..-|..|+.++.+|+.+....-    +.+.+.+|+.++-++
T Consensus      1025 yigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g----~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1025 YIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTG----CEDALIHLLNLIWPN 1086 (1172)
T ss_pred             HHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcC----cHHHHHHHHHHhhhh
Confidence            4  3345555  3458888899988989899999999999997754421    112334555555444

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.81  E-value=0.00082  Score=64.58  Aligned_cols=225  Identities=15%  Similarity=0.119  Sum_probs=153.0

Q ss_pred             hhhcCCHHHHHHHHHHHHHhhCChhhHHHHH-hCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHHHh-cCc
Q 008585          245 LVESGSTVGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAE-EGI  320 (560)
Q Consensus       245 lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~-~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~  320 (560)
                      +++.-++-.+..|..|+.++...++.+..+. +..+-..++++++.  ++.++|.+.+.++|.++.++++.+.+-. -..
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl  236 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3333355578889999999999988887655 45566788888876  6678999999999999998887755444 446


Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHHccCCh-hHHHHHHhCCCHHHHHHhccC-----CccH----------HHHHH--
Q 008585          321 VSVMIKLLDCGILLGSKEYAAECLQNLTASNE-NLRRSVVSEGGIRSLLAYLDG-----PLPQ----------ESAVG--  382 (560)
Q Consensus       321 v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~-~~~~~i~~~g~l~~L~~ll~~-----~~~~----------~~a~~--  382 (560)
                      +.-++++++......+-+-++.++.|++...+ ..-....-.|-+.+-++.+..     .+.+          ++-..  
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            77788888766555788889999999987432 211222223434455555532     1110          00000  


Q ss_pred             -----HHHHh-----hc-c---------ccHHHHHhC--CcHHHHHHHHhcCCHH-HHHHHHHHHHHHhCC-hhHHHHHH
Q 008585          383 -----ALRNL-----VG-S---------VSQEVLISL--GFFPRLVHVLKAGSLG-AQQAAASALCRVCTS-AEMKKLVG  438 (560)
Q Consensus       383 -----~L~nl-----a~-~---------~~~~~l~~~--~~i~~Lv~lL~~~~~~-v~~~A~~aL~~La~~-~~~~~~i~  438 (560)
                           .+..+     +. +         .+.+.+.+.  ..+..|.++++..++. .-..|+.-|..+.+. |+.+..+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence                 11111     11 1         123334333  3577888889886654 445567777777754 99999999


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       439 ~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ..|+-..+++++.+++++++..|..++..+.
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999999988775

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.76  E-value=0.00021  Score=75.52  Aligned_cols=258  Identities=14%  Similarity=0.134  Sum_probs=162.4

Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHH--HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR--AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~--~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (560)
                      .+..++..|++.++.+|.+|+..+..++..-..+.  .+..+-| -.|.+.+...+|++.-..+.+++.+...-+.-+..
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG-vvLyEylgeeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG-VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh-HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence            35666778889999999999999999976533332  2222222 23667788889999887777777665322111111


Q ss_pred             H-hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh---HHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585          316 A-EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN---LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (560)
Q Consensus       316 ~-e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~---~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~  389 (560)
                      - -.+++|.|..+|++.+. .++++++..++.|+...++   .|+-+   .+--.|+.+|..  ..++..|...++.++.
T Consensus       879 pPi~dllPrltPILknrhe-KVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHE-KVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CChhhhcccchHhhhhhHH-HHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            1 15789999999999997 8999999999999985553   12111   112234555543  5788999999999986


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      .-.++     .++..|++-|+..+...+....-+|+-.+..   +..   ..++|.|+.=...++..||.-.+.+|+.+.
T Consensus       955 aIGPq-----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~---c~p---FtVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen  955 AIGPQ-----DVLATLLNNLKVQERQNRVCTTVAIAIVAET---CGP---FTVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred             hcCHH-----HHHHHHHhcchHHHHHhchhhhhhhhhhhhh---cCc---hhhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence            43332     2355566656555544444444444444321   111   246788887777888889999999999997


Q ss_pred             CCChh-hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585          470 TLPQN-CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (560)
Q Consensus       470 ~~~~~-~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~  514 (560)
                      ..-.+ .+..+-  -..+.|-..|-+.+ ...+..+..++.+|+-+
T Consensus      1024 eyigemskdYiy--av~PlleDAlmDrD-~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1024 EYIGEMSKDYIY--AVTPLLEDALMDRD-LVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHhhhHHH--HhhHHHHHhhcccc-HHHHHHHHHHHHHHhcC
Confidence            43322 222221  22344444454442 24566777788777743

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.74  E-value=0.0018  Score=65.97  Aligned_cols=184  Identities=25%  Similarity=0.288  Sum_probs=141.4

Q ss_pred             CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHH
Q 008585          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA  316 (560)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (560)
                      ..++.+++.+.+.+..++..++..+..+..          .-.++.+..++.+.++.+|..++.+|.++-.         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD---------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence            468889999999989999999888666522          2345889999999999999999998877643         


Q ss_pred             hcCcHHHHHHHhhc-CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--------------cHHHHH
Q 008585          317 EEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--------------PQESAV  381 (560)
Q Consensus       317 e~g~v~~L~~lL~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--------------~~~~a~  381 (560)
                       ...++.+++++.+ .+. .++..+.++|+.+-....           +..++..+.++.              ++..+.
T Consensus       104 -~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~~a-----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         104 -PEAVPPLVELLENDENE-GVRAAAARALGKLGDERA-----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             -hhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCchhh-----------hHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence             3478899999985 554 899999999998864321           566666665532              344455


Q ss_pred             HHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585          382 GALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       382 ~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                      ..+..+-         ....++.+...+...+..++..|+.+|+.+....        ....+.+...+...+..+|..+
T Consensus       171 ~~l~~~~---------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~  233 (335)
T COG1413         171 EALGELG---------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA  233 (335)
T ss_pred             HHHHHcC---------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence            5554443         3456888999999999999999999999998654        2456788888888999999999


Q ss_pred             HHHHHHhc
Q 008585          462 AQAISSLV  469 (560)
Q Consensus       462 ~~aL~~L~  469 (560)
                      +.+|..+-
T Consensus       234 ~~~l~~~~  241 (335)
T COG1413         234 LLALGEIG  241 (335)
T ss_pred             HHHhcccC
Confidence            99988885

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.73  E-value=0.015  Score=63.61  Aligned_cols=174  Identities=18%  Similarity=0.239  Sum_probs=101.0

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcCCc--hhHHHHHh----------------------------cCcHHHHHHHh---
Q 008585          282 PLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAE----------------------------EGIVSVMIKLL---  328 (560)
Q Consensus       282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e----------------------------~g~v~~L~~lL---  328 (560)
                      .+++.+.+++.+++.+|..+|++++...  ..-..+.+                            ...++-+..+|   
T Consensus       861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~  940 (1233)
T KOG1824|consen  861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKH  940 (1233)
T ss_pred             HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Confidence            4555666677899999999999998632  22222111                            00111111111   


Q ss_pred             -hcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHH
Q 008585          329 -DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPR  404 (560)
Q Consensus       329 -~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~  404 (560)
                       +..++ ..|.-.++||+.|+..+++.        .++.|-..+.+  +..+..++.++.-... ...+-.......+..
T Consensus       941 cE~~ee-gtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~ 1011 (1233)
T KOG1824|consen  941 CECAEE-GTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGD 1011 (1233)
T ss_pred             cccchh-hhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHH
Confidence             12222 45666667777776655542        15666666655  4455555555554443 111212234567889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHc----------------------cCCHHHHHHH
Q 008585          405 LVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE----------------------AKPNSVREVA  461 (560)
Q Consensus       405 Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~----------------------s~~~~v~~~A  461 (560)
                      ++.++++++.+|++.|..++...+.+ +..-+     +..|.|+.++.                      ...-++|..|
T Consensus      1012 fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr-----DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaa 1086 (1233)
T KOG1824|consen 1012 FLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR-----DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAA 1086 (1233)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHH
Confidence            99999999999999999999998866 33222     22333333332                      1224578888


Q ss_pred             HHHHHHhc
Q 008585          462 AQAISSLV  469 (560)
Q Consensus       462 ~~aL~~L~  469 (560)
                      -+++..|.
T Consensus      1087 FEcmytLL 1094 (1233)
T KOG1824|consen 1087 FECMYTLL 1094 (1233)
T ss_pred             HHHHHHHH
Confidence            88888886

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.71  E-value=0.00066  Score=64.98  Aligned_cols=184  Identities=17%  Similarity=0.188  Sum_probs=116.9

Q ss_pred             ccCCHHHHHHHHHHHHHHHhhC--hHHHHHHhhC--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCH
Q 008585          164 QIGHLEAKHKALDSLVEAMKED--EKNVLAVMGR--SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL  239 (560)
Q Consensus       164 ~~~~~~~~~~A~~~L~~L~~~~--~~~~~~i~~~--g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i  239 (560)
                      ...+-+.+.+|+..|..++.++  ......+.+.  ..+..+...+++....+...|+.++..++..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5677889999999999999877  2222222211  44567777777767788899999999998754322111123478


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc---h-hHH
Q 008585          240 PPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP---E-VRQ  313 (560)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~---~-~~~  313 (560)
                      |.|++.+.++...++..|..+|..+...-. ....+     ++.+...+.+.+|.+|..++..+..+.. .+   . ...
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            999999999999999999999999988644 22221     2666777888999999999999988864 22   1 111


Q ss_pred             HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585          314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       314 ~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                      ...-..+++.+.+.+.++++ ++|..|-.++..+....+.
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~-~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADP-EVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-H-HHHHHHHHHHHHHHHHH-H
T ss_pred             cchHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHCCH
Confidence            11114578888999999997 8999999999998764443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.0035  Score=65.88  Aligned_cols=246  Identities=17%  Similarity=0.124  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCC
Q 008585          212 IREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD  291 (560)
Q Consensus       212 v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~  291 (560)
                      .+-.+......++..+..-... .+++...++.+..+.+..++..|+..|-.|+....-.....     ...++++++.+
T Consensus       174 ~~~~~~~~~~~lg~~~ss~~~d-~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y-----~~A~~~lsD~~  247 (823)
T KOG2259|consen  174 NRLLLYCFHLPLGVSPSSLTHD-REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACY-----SRAVKHLSDDY  247 (823)
T ss_pred             chHHHHHHhhhcccCCCccccc-HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHH-----HHHHHHhcchH
Confidence            3444445555555544311110 11233347888888899999999999888876433333333     66788999999


Q ss_pred             hHHHHHHHHHHHHhcC-C--c----hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585          292 SVSQAAAACTLKNISA-V--P----EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI  364 (560)
Q Consensus       292 ~~~~~~a~~aL~nLa~-~--~----~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l  364 (560)
                      ..+|..|...++-.+. .  +    .....+.+ .++..+...+.+.+. .+|..|..+|+.+..-+++.-..-.+..++
T Consensus       248 e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl-~VRV~AaK~lG~~~~vSee~i~QTLdKKlm  325 (823)
T KOG2259|consen  248 EDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSL-SVRVEAAKALGEFEQVSEEIIQQTLDKKLM  325 (823)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCce-eeeehHHHHhchHHHhHHHHHHHHHHHHHh
Confidence            9999988766665442 1  1    22333333 367778888888886 899999999998877555433222222111


Q ss_pred             HHHHHhccCCccHHHHHHHHHHhhc-------------cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-
Q 008585          365 RSLLAYLDGPLPQESAVGALRNLVG-------------SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-  430 (560)
Q Consensus       365 ~~L~~ll~~~~~~~~a~~~L~nla~-------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-  430 (560)
                      ..+-+-= ...-+......=+.+++             ++...-++..|.-..+++-|.+.-.+|++.|+..++.|+.+ 
T Consensus       326 s~lRRkr-~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss  404 (823)
T KOG2259|consen  326 SRLRRKR-TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS  404 (823)
T ss_pred             hhhhhhh-hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC
Confidence            1000000 00000011111111111             01112234455556666666655566666666666666643 


Q ss_pred             hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          431 AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       431 ~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      |.+...-     +..|++++......+|..|..+|..|+.+
T Consensus       405 P~FA~~a-----ldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  405 PGFAVRA-----LDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             CCcHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            4443322     55566666666566666666666666533

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.70  E-value=0.0012  Score=72.66  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHH-hcCCchHHHHHhCCCHHHHHHhhhc
Q 008585          170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENWLVSEGVLPPLIRLVES  248 (560)
Q Consensus       170 ~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~lL~~  248 (560)
                      -|..|+.-|..++.-.+=.+......|..|..++||+++..+++..-+-+-..+ +-++.+...+++.++-..++++|.+
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            467788888888876665566666789999999999999989887766666555 5566799999999999999999988


Q ss_pred             C---CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccC-ChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHH
Q 008585          249 G---STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA-VPEVRQMLAEEGIVS  322 (560)
Q Consensus       249 ~---~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~  322 (560)
                      +   +++-|..++-+|..+..+ +-.+....+.+.+...++.+.++ .|-++...+-+|+.|=. +++.|-.-.+.++..
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe  645 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE  645 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence            3   567888999999999887 44566777888888888888884 68899999999999964 566776667789999


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585          323 VMIKLLDCGILLGSKEYAAECLQNLTAS  350 (560)
Q Consensus       323 ~L~~lL~~~~~~~v~~~a~~~L~~La~~  350 (560)
                      .|+.+|.++.+ +||..|+.+|+.+...
T Consensus       646 kL~~~LsD~vp-EVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  646 KLILLLSDPVP-EVRAAAVFALGTFLSN  672 (1387)
T ss_pred             HHHHHhcCccH-HHHHHHHHHHHHHhcc
Confidence            99999999887 8999999999999874

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.043  Score=58.64  Aligned_cols=299  Identities=12%  Similarity=0.149  Sum_probs=189.4

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (560)
                      .+...++++..|.+.-+-.|.+|.-.+..+.-.-|+..+     ...+.|.+=|..+|+.++..|+.+++.|++.++ +-
T Consensus       142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence            456678899999999999999999988888765554322     478999999999999999999999999998665 22


Q ss_pred             HHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHH--h
Q 008585          231 NWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKN--I  305 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~n--L  305 (560)
                      -     ..-|.+.++|.+. +..+.........+|+-- |--..     ..+++|.+++.+..- .+...+..++..  +
T Consensus       217 L-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  217 L-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             c-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence            1     2457788888765 555677777788888653 22222     335888888876432 233444444332  2


Q ss_pred             cC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHH
Q 008585          306 SA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVG  382 (560)
Q Consensus       306 a~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~  382 (560)
                      +. .+++-..+  .-++.-|-.++.+.+. .+++-++-+++.+...++..-+..     -+.+++.|++  +.++..|+.
T Consensus       287 s~g~~d~~asi--qLCvqKLr~fiedsDq-NLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALd  358 (877)
T KOG1059|consen  287 SSGMSDHSASI--QLCVQKLRIFIEDSDQ-NLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALD  358 (877)
T ss_pred             ccCCCCcHHHH--HHHHHHHhhhhhcCCc-cHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHH
Confidence            22 11111111  1256667777888886 899999999999998666432211     4567888876  778999999


Q ss_pred             HHHHhhccccHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhCChhHHHHHHhc-CCHHHHHHHHccCCHHHHHH
Q 008585          383 ALRNLVGSVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       383 ~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~La~~~~~~~~i~~~-g~i~~Lv~ll~s~~~~v~~~  460 (560)
                      .+.-+....+..++     +..|+..+... ....+-..+.-+-.+|....+ .++.+. =.+..|+++..-...+.-..
T Consensus       359 Ll~gmVskkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY-~~ItdFEWYlsVlveLa~l~~~~~G~~  432 (877)
T KOG1059|consen  359 LLYGMVSKKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY-QYITDFEWYLSVLVELARLEGTRHGSL  432 (877)
T ss_pred             HHHHHhhhhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHhccccchhhH
Confidence            99999875444333     44555544333 334555544444445433222 122222 24566677766444433344


Q ss_pred             HHHHHHHhcCCChhhHHHh
Q 008585          461 AAQAISSLVTLPQNCREVK  479 (560)
Q Consensus       461 A~~aL~~L~~~~~~~~~~~  479 (560)
                      ..+-+.+++...+..+.|.
T Consensus       433 I~eQi~Dv~iRV~~iR~fs  451 (877)
T KOG1059|consen  433 IAEQIIDVAIRVPSIRPFS  451 (877)
T ss_pred             HHHHHHHHheechhhhHhH
Confidence            4555666765555555544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.69  E-value=0.00012  Score=58.45  Aligned_cols=87  Identities=28%  Similarity=0.345  Sum_probs=70.2

Q ss_pred             HHHHHHhh-hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585          239 LPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (560)
Q Consensus       239 i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (560)
                      |+.|++.| +++++.+|..++.+|.++-  .+        ..++.|+.+++++++.+|..++.+|..+.          +
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57899988 7889999999999999652  11        23589999999999999999999998773          3


Q ss_pred             cCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585          318 EGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (560)
Q Consensus       318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~  345 (560)
                      ..+++.|.+++.++++..++..|..+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            4589999999988766467888888874

>PF05536 Neurochondrin: Neurochondrin

Probab=97.67  E-value=0.0045  Score=66.68  Aligned_cols=229  Identities=17%  Similarity=0.214  Sum_probs=158.1

Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh----HHHHHhCCChHHHHHHhccC-------ChHHHHHHHHHHHHhc
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEM----ARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKNIS  306 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~----~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLa  306 (560)
                      .+...+++|+..+..-|-.+...+.++..+.+.    ++.+.+.=|.+-|-++|+++       ....+.-|..+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            466778889888866677777888888665332    34577777788888999872       2456778899999999


Q ss_pred             CCchhH--HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHH
Q 008585          307 AVPEVR--QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGA  383 (560)
Q Consensus       307 ~~~~~~--~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~  383 (560)
                      ..|+..  ..++  +-||.+++.+.+.++..+...++.+|..++.+.+ -++.+++.|+++.|.+.+.+ +...+.++.+
T Consensus        86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPNQSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHhCcchHHHHHHH
Confidence            887765  4444  4799999999877655789999999999996544 47889999999999999866 6788999999


Q ss_pred             HHHhhccccHHHHHh-----CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhH--HHHHHh----cCCHHHHHHHHcc
Q 008585          384 LRNLVGSVSQEVLIS-----LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEM--KKLVGE----AGCTPLLIKLLEA  452 (560)
Q Consensus       384 L~nla~~~~~~~l~~-----~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~--~~~i~~----~g~i~~Lv~ll~s  452 (560)
                      +.+++.....+.+.+     ..+++.+-..........+...+..|..+-...+.  ......    ......+..++++
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            999987222111111     12344455555555566677778888887644321  112222    2234455566665


Q ss_pred             C-CHHHHHHHHHHHHHhc
Q 008585          453 K-PNSVREVAAQAISSLV  469 (560)
Q Consensus       453 ~-~~~v~~~A~~aL~~L~  469 (560)
                      + .+.-|..+..+...|.
T Consensus       243 r~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLL  260 (543)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            4 4556677777666665

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.014  Score=61.31  Aligned_cols=335  Identities=17%  Similarity=0.127  Sum_probs=203.5

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      ....+..++..+.+..+.+++.....|..+.......    ...-..+.+.++++.++...+..++..+..+..... -.
T Consensus        94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-i~  168 (569)
T KOG1242|consen   94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-IE  168 (569)
T ss_pred             hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH-Hh
Confidence            3456788888888888888877777776664321111    111246678888888888889999999888876643 24


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHH-HHHHHHHHHhhCChhhHHHHHhCCChHHHHHH---hccCChHHHHHHHHHHHHhcC
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGK-EKATISLQRLSMSAEMARAIVGHGGVRPLIEI---CQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~-~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l---l~~~~~~~~~~a~~aL~nLa~  307 (560)
                      .+.+.+.+..+.+.+++.....+ +.+..+......+-.   ...+...++.+-.+   ..+..+.+|..+..+...+-.
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            45566788888888887644433 323322222221111   11122333444444   445677888777777655532


Q ss_pred             -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (560)
Q Consensus       308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L  384 (560)
                       .+...-    .-.++.++.-+....+ ..+..++..|+.++...+. +-...-...++.+.+.|-+  +.++..+..+|
T Consensus       246 ~~~~~aV----K~llpsll~~l~~~kW-rtK~aslellg~m~~~ap~-qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l  319 (569)
T KOG1242|consen  246 CLSAYAV----KLLLPSLLGSLLEAKW-RTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL  319 (569)
T ss_pred             hcCcchh----hHhhhhhHHHHHHHhh-hhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence             111110    1123334433334454 6888999999999987664 3345557789999999865  78999999999


Q ss_pred             HHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH--hCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHH
Q 008585          385 RNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV--CTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVRE  459 (560)
Q Consensus       385 ~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L--a~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~  459 (560)
                      ..++. -++.+.   ..+++.|++.+.+....+.+ +...|+.=  ...  +.....     .+|.|.+-+...+..++.
T Consensus       320 ~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr  390 (569)
T KOG1242|consen  320 LKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR  390 (569)
T ss_pred             HHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence            99998 444431   23678888888766533322 33333321  111  112222     367777777777788889


Q ss_pred             HHHHHHHHhcCC---ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          460 VAAQAISSLVTL---PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       460 ~A~~aL~~L~~~---~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      .++....|++.-   +.....++.  ..++.+-..+.+. .+++|..+..+|+.+-
T Consensus       391 ~t~~IidNm~~LveDp~~lapfl~--~Llp~lk~~~~d~-~PEvR~vaarAL~~l~  443 (569)
T KOG1242|consen  391 KTAIIIDNMCKLVEDPKDLAPFLP--SLLPGLKENLDDA-VPEVRAVAARALGALL  443 (569)
T ss_pred             hHHHHHHHHHHhhcCHHHHhhhHH--HHhhHHHHHhcCC-ChhHHHHHHHHHHHHH
Confidence            999999999843   333444442  3445555555554 4467777777776554

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.57  E-value=0.00019  Score=57.27  Aligned_cols=86  Identities=28%  Similarity=0.440  Sum_probs=69.3

Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhh
Q 008585          402 FPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR  480 (560)
Q Consensus       402 i~~Lv~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~  480 (560)
                      |+.|++.| +++++.++..++.+|+++..          ...++.|++++.++++.+|..|+.+|..+.           
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG-----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence            57889988 77899999999999996531          245999999999999999999999999882           


Q ss_pred             hCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585          481 DDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (560)
Q Consensus       481 ~~~~v~~Lv~lL~~~~~~~~~~~a~~~L  508 (560)
                      +...++.|.+++.+++...++..+..+|
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            2346789999998876666787777765

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.025  Score=65.07  Aligned_cols=386  Identities=17%  Similarity=0.154  Sum_probs=203.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC------CCC------cch-------hhhhhH--Hhhhhhhhh-hhchh
Q 008585           67 FSKNALCREQLQAVSKTLKEAIELAELCVKEK------YEG------KLR-------MQSDLD--ALSGKLDLN-LHDCG  124 (560)
Q Consensus        67 ~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~------~~~------~~~-------~~s~~~--~~~~~l~~~-~~d~~  124 (560)
                      +.+.|.=..++.++..|+.....-+.+-...+      ..|      +|.       ++||+.  .+.-+|.+. -|...
T Consensus       891 lgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~  970 (1702)
T KOG0915|consen  891 LGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNAT  970 (1702)
T ss_pred             cCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhch
Confidence            44455557888888888886332221111111      112      332       444432  334444433 44555


Q ss_pred             hHHhhCCCCCCCcccccCCCCCchhhhhhchHHHHHHHHc--cCCHHH-HHHHHHHHHHHHhhChHHHHHHhhCCCHHHH
Q 008585          125 LLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQ--IGHLEA-KHKALDSLVEAMKEDEKNVLAVMGRSNIAAL  201 (560)
Q Consensus       125 ~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~i~~Ll~~L~--~~~~~~-~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~L  201 (560)
                      |--+-|+. .++..+..     .+.+.+.-+.+.|+.+|-  .-||+. ...|+..+.+.+-.+++....-.-.....-|
T Consensus       971 wnSk~GaA-fGf~~i~~-----~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen  971 WNSKKGAA-FGFGAIAK-----QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred             hhcccchh-hchHHHHH-----HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            55554443 12222211     124556677888888883  223333 5578889998887676554333333566777


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCch---HHHHHhCCCHHHHHHhhhcCCHHHHHH---HHHHHHHhhC---Chhh--
Q 008585          202 VQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLPPLIRLVESGSTVGKEK---ATISLQRLSM---SAEM--  270 (560)
Q Consensus       202 v~lL~~~~~~v~~~A~~~L~~La~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~~---a~~~L~~La~---~~~~--  270 (560)
                      +.-|.+....+|+.++-+|..|-...+.   .+.+-  .....+.+.+.+-...+|+.   ++.+|.+++.   +..+  
T Consensus      1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence            7777788899999999999999887653   33332  24556667777666666664   5666666643   2211  


Q ss_pred             -HHHHHhCCChHHHHHH-hccCChHHHHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHH
Q 008585          271 -ARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN  346 (560)
Q Consensus       271 -~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~  346 (560)
                       ..++. ..++|.|++- .-+.-+++|+.+..++..|+.+.  ..+..+.  ..+|.|+.....-++.-+-+-++++ .|
T Consensus      1123 ~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~ 1198 (1702)
T KOG0915|consen 1123 KGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-IN 1198 (1702)
T ss_pred             cHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hh
Confidence             11111 1223332210 01346789999999999998643  3343333  3677777776654442233334444 22


Q ss_pred             Hcc-CChhHHHHHHhCC--------------------CHHHHHHhccC---CccHHHHHHHHHHhhccccHH-HHHhCCc
Q 008585          347 LTA-SNENLRRSVVSEG--------------------GIRSLLAYLDG---PLPQESAVGALRNLVGSVSQE-VLISLGF  401 (560)
Q Consensus       347 La~-~~~~~~~~i~~~g--------------------~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~~-~l~~~~~  401 (560)
                      +.. .-+..|..+.+..                    .++.+.+++.+   -..+..+..++.-|+..-..+ .-..-..
T Consensus      1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred             hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence            211 1112222222211                    13333344433   234556666666665410000 0011223


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          402 FPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      +..++..+++.++.+++.-+.+.+.|+..  ++-.+.+     ++.++..+..+.+..+..++..+.+++
T Consensus      1279 l~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKL-----ie~~l~~~l~k~es~~siscatis~Ia 1343 (1702)
T KOG0915|consen 1279 LRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKL-----IETLLADLLGKDESLKSISCATISNIA 1343 (1702)
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHH-----HHHHHHHHhccCCCccchhHHHHHHHH
Confidence            55666666788999999999999999854  4333333     333343343333333345555555544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.44  E-value=0.0071  Score=63.71  Aligned_cols=254  Identities=17%  Similarity=0.150  Sum_probs=164.4

Q ss_pred             HHHHHHhhCChhhHHHHHhCCChHHHHHHh----------ccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHH
Q 008585          258 TISLQRLSMSAEMARAIVGHGGVRPLIEIC----------QTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIK  326 (560)
Q Consensus       258 ~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll----------~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~  326 (560)
                      +.+|.-++.++.+...+....++..|..+-          ...++.+...|+.+|+|+.. ++..|+.+.+.|..+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            456666777777777777777777777665          23578899999999999985 6789999999999999999


Q ss_pred             HhhcC-----CchhHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--------Cc-----------cHHHHH
Q 008585          327 LLDCG-----ILLGSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------PL-----------PQESAV  381 (560)
Q Consensus       327 lL~~~-----~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--------~~-----------~~~~a~  381 (560)
                      .++..     +. ++.....+.|--++......+..+++ .+++..+...+..        ..           ....++
T Consensus        82 ~Lk~~~~~~~~~-d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   82 RLKNYSDSSQPS-DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHcccccCCCh-hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            99876     44 78899999998888877777777775 5777777776632        10           134577


Q ss_pred             HHHHHhhccccHHHH-HhCCcHHHHHHHHhc---------CCHHHHHHHHHHHHHHhCChhHHHHH--------------
Q 008585          382 GALRNLVGSVSQEVL-ISLGFFPRLVHVLKA---------GSLGAQQAAASALCRVCTSAEMKKLV--------------  437 (560)
Q Consensus       382 ~~L~nla~~~~~~~l-~~~~~i~~Lv~lL~~---------~~~~v~~~A~~aL~~La~~~~~~~~i--------------  437 (560)
                      +.+-|+......... .....+++++.++..         ........+..+|.|+--.  ....+              
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCCC
Confidence            788888762111111 123445555554432         1246677777888877311  11110              


Q ss_pred             HhcCCHHHHHHHHcc----C----CHHHHHHHHHHHHHhcCCChhhHHHhhh---------------CCC-hHHHHhccC
Q 008585          438 GEAGCTPLLIKLLEA----K----PNSVREVAAQAISSLVTLPQNCREVKRD---------------DKS-VPNLVQLLD  493 (560)
Q Consensus       438 ~~~g~i~~Lv~ll~s----~----~~~v~~~A~~aL~~L~~~~~~~~~~~~~---------------~~~-v~~Lv~lL~  493 (560)
                      .....+..|+++++.    .    -.+.-...+.+|..++......+.+++.               .+. -.+|++++.
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt  318 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT  318 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence            111246666666641    1    1133445566677776554444444432               233 378999998


Q ss_pred             CCCchhhHHHHHHHHHHhCCCh
Q 008585          494 PSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       494 ~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                      +.. ..++..+...+..||...
T Consensus       319 ~~~-~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  319 SPD-PQLKDAVAELLFVLCKED  339 (446)
T ss_pred             CCC-chHHHHHHHHHHHHHhhh
Confidence            875 568888888888997433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.34  E-value=0.0079  Score=63.39  Aligned_cols=246  Identities=15%  Similarity=0.159  Sum_probs=159.2

Q ss_pred             ChHHHHHHhhCCCHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcC----
Q 008585          185 DEKNVLAVMGRSNIAALVQLL----------TATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESG----  249 (560)
Q Consensus       185 ~~~~~~~i~~~g~v~~Lv~lL----------~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~----  249 (560)
                      ++.+...+....++..|+++-          ...++.+...|+++|+|+-...+ .|..+++.|..+.+++.|+..    
T Consensus        11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~   90 (446)
T PF10165_consen   11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS   90 (446)
T ss_pred             CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence            444555555555666666654          23458999999999999998776 888999999999999999987    


Q ss_pred             -CHHHHHHHHHHHHHhhC-ChhhHHHHH-hCCChHHHHHHhcc---------C--------ChHHHHHHHHHHHHhcCCc
Q 008585          250 -STVGKEKATISLQRLSM-SAEMARAIV-GHGGVRPLIEICQT---------G--------DSVSQAAAACTLKNISAVP  309 (560)
Q Consensus       250 -~~~~~~~a~~~L~~La~-~~~~~~~l~-~~g~i~~Lv~ll~~---------~--------~~~~~~~a~~aL~nLa~~~  309 (560)
                       +.++.-...+.|.-++. ..+.+..++ +++++..++..+..         .        +......++.++.|+..+.
T Consensus        91 ~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~  170 (446)
T PF10165_consen   91 QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY  170 (446)
T ss_pred             CChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence             78888889999988865 466666665 46888888877631         0        2234567888999997532


Q ss_pred             hhHHHHHhcCcHHHHHHHhhc-------CC-chhHHHHHHHHHHHHccCChhH-------HHHHH----hCCCHHHHHHh
Q 008585          310 EVRQMLAEEGIVSVMIKLLDC-------GI-LLGSKEYAAECLQNLTASNENL-------RRSVV----SEGGIRSLLAY  370 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~-------~~-~~~v~~~a~~~L~~La~~~~~~-------~~~i~----~~g~l~~L~~l  370 (560)
                      .....-.+...++.++.++..       .. ......+++.+|.|+--.....       ...+.    ....+..|+.+
T Consensus       171 ~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~  250 (446)
T PF10165_consen  171 PKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDF  250 (446)
T ss_pred             CcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHH
Confidence            111111112333443333321       11 1256778888888884321111       00000    11246777777


Q ss_pred             ccC----------CccHHHHHHHHHHhhc-c-ccHHHH----------------HhCCcHHHHHHHHhcCCHHHHHHHHH
Q 008585          371 LDG----------PLPQESAVGALRNLVG-S-VSQEVL----------------ISLGFFPRLVHVLKAGSLGAQQAAAS  422 (560)
Q Consensus       371 l~~----------~~~~~~a~~~L~nla~-~-~~~~~l----------------~~~~~i~~Lv~lL~~~~~~v~~~A~~  422 (560)
                      |+.          .....+.+.+|.+++. . ..++.+                .....-.+|++++.+..+.++..++.
T Consensus       251 Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vae  330 (446)
T PF10165_consen  251 LDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAE  330 (446)
T ss_pred             HHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHH
Confidence            743          1245677777777776 2 222222                12355778999999988999999999


Q ss_pred             HHHHHhCC
Q 008585          423 ALCRVCTS  430 (560)
Q Consensus       423 aL~~La~~  430 (560)
                      .+..||..
T Consensus       331 llf~Lc~~  338 (446)
T PF10165_consen  331 LLFVLCKE  338 (446)
T ss_pred             HHHHHHhh
Confidence            99999843

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.0011  Score=68.01  Aligned_cols=184  Identities=11%  Similarity=0.015  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc--HHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC
Q 008585          338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS  413 (560)
Q Consensus       338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~--~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~  413 (560)
                      ..++.+|..++.+-...|.-+.+..+.+.|+++|++|++  ...+...+.|+..  .+-+..+.+.++++.|+.++.+.+
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            345667777777656667667777889999999999775  4578888888887  466788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChh---hHHHhhhCC----C
Q 008585          414 LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN---CREVKRDDK----S  484 (560)
Q Consensus       414 ~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~---~~~~~~~~~----~  484 (560)
                      ..+|....|.++++..+  .+.+-.+...-++..++.+...+...+++...+.|.++..+...   .+++.-...    .
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999865  33333444455699999999999999999999999999863222   233322111    1


Q ss_pred             hHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHH
Q 008585          485 VPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMI  522 (560)
Q Consensus       485 v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~  522 (560)
                      ...|+..++..++- .....+.++.+++-+.+..+.++
T Consensus       567 fk~l~~k~e~~np~-~i~~~~yilv~~aa~d~~l~~~V  603 (743)
T COG5369         567 FKRLIDKYEENNPM-EILEGCYILVRNAACDDTLDYIV  603 (743)
T ss_pred             HHHHHHHHHhcCch-hhhhhHHHHHHHHhccchHHHHH
Confidence            24455556655332 23344667777766555444443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.32  E-value=0.013  Score=64.61  Aligned_cols=340  Identities=14%  Similarity=0.105  Sum_probs=206.3

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--chH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--SCE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~  230 (560)
                      ....+.++.....++...+.........+...-..   .......+++...+++....+.+...+.-...++...  ++.
T Consensus       315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence            34445555555566655565555555555431110   1112234777788888887888888877777776643  355


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP  309 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~  309 (560)
                      ..+.....+|.+-.+..+.+..++...+.....++---..-..  -....+.++..+++..+.++......+..+-. ++
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t--i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~  469 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT--ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND  469 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC--ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccC
Confidence            5666666788888888888888888777666665332110000  12334667778888889998888876655533 23


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl  387 (560)
                      ...........++.+..+..+... .++....+.+..++....   ..++.....+.+...+.+  ..+++.|...+..+
T Consensus       470 v~g~~~~s~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l  545 (759)
T KOG0211|consen  470 VIGISTVSNSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPAL  545 (759)
T ss_pred             cccchhhhhhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHH
Confidence            333444445677888887777665 788888888888886433   122222211222222222  45778888888777


Q ss_pred             hccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 008585          388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (560)
Q Consensus       388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~  467 (560)
                      +..-+ ........++.++.+..+++...+...+.++..|+.  -.-+.+.....+|.+.++.....++||..++..|..
T Consensus       546 ~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~  622 (759)
T KOG0211|consen  546 VETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK  622 (759)
T ss_pred             HHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence            76222 222234567777777777777777777777776652  122222233458999999999999999999999999


Q ss_pred             hcC--CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHH
Q 008585          468 LVT--LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS  510 (560)
Q Consensus       468 L~~--~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~  510 (560)
                      +..  +.+.++..+     .+.+..+-.+.+. .++-.+..++..
T Consensus       623 i~~~L~~~~~~~~v-----~pll~~L~~d~~~-dvr~~a~~a~~~  661 (759)
T KOG0211|consen  623 ILKLLDESVRDEEV-----LPLLETLSSDQEL-DVRYRAILAFGS  661 (759)
T ss_pred             HHhhcchHHHHHHH-----HHHHHHhccCccc-chhHHHHHHHHH
Confidence            973  333333333     2555555554433 355555555443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.047  Score=58.14  Aligned_cols=311  Identities=12%  Similarity=0.118  Sum_probs=183.7

Q ss_pred             hchHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-
Q 008585          153 HGNTRELLARLQIGHL--EAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTATSPRIREKTVTVICSLAESGS-  228 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~--~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-  228 (560)
                      ..+-.++-+.|-+++.  -+|.+|+-+|..|.+.+|+    ++.. +..+.++.+|++.+..+.-.+...+..|+...+ 
T Consensus       145 ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~  220 (938)
T KOG1077|consen  145 EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE  220 (938)
T ss_pred             HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence            3333444456666653  4588888899999887773    3333 558999999999887777778888888876543 


Q ss_pred             -hHHHHHhCCCHHHHHHhhhc-------------CCHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhcc---
Q 008585          229 -CENWLVSEGVLPPLIRLVES-------------GSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQT---  289 (560)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~-------------~~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~---  289 (560)
                       ++..+-.  .+..|.++...             +.|..+...++.|...-.  ++..+..+.  .++..++.-.+.   
T Consensus       221 ~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~  296 (938)
T KOG1077|consen  221 SYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPK  296 (938)
T ss_pred             HHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCcc
Confidence             4333211  22333322211             256777788888888733  233333332  222322222221   


Q ss_pred             -CCh---HHHHHHHHHHHHhcCC-chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585          290 -GDS---VSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI  364 (560)
Q Consensus       290 -~~~---~~~~~a~~aL~nLa~~-~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l  364 (560)
                       .++   ..+...+.-..+++.+ +.-.+.+  ..++..|-+++.+.+. .+|+-+++.++.|+..... .+.+-+.  .
T Consensus       297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~-NiRYLaLEsm~~L~ss~~s-~davK~h--~  370 (938)
T KOG1077|consen  297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRET-NIRYLALESMCKLASSEFS-IDAVKKH--Q  370 (938)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccc-cchhhhHHHHHHHHhccch-HHHHHHH--H
Confidence             111   1222233323334321 1222222  2367788888888876 8999999999999986432 3333333  6


Q ss_pred             HHHHHhccC---CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhH------
Q 008585          365 RSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEM------  433 (560)
Q Consensus       365 ~~L~~ll~~---~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~------  433 (560)
                      +.++..|..   .+++..|+..|..+|..++.+.+     +.-++++|.+-+..+++..+.=+.-|+..  +++      
T Consensus       371 d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdv  445 (938)
T KOG1077|consen  371 DTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDV  445 (938)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHhchhhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence            667777763   46799999999999986565544     67788888888888887766555555521  111      


Q ss_pred             -HHHH------HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCC
Q 008585          434 -KKLV------GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDK  483 (560)
Q Consensus       434 -~~~i------~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~  483 (560)
                       -+.+      .+.++--.++++.. .+++++..|+..+......+...+.+++-++
T Consensus       446 iLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVKvgg  501 (938)
T KOG1077|consen  446 ILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVKVGG  501 (938)
T ss_pred             HHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence             1111      12234444555443 5577888888888777655555555555433

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.21  E-value=0.02  Score=53.44  Aligned_cols=174  Identities=13%  Similarity=0.130  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHH
Q 008585          377 QESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAG-----SLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIK  448 (560)
Q Consensus       377 ~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~  448 (560)
                      .-+|+..+..++. ++.+..+.+.++--.|..+|...     ...++..+...|+.|...  .+..+.+...+++|..++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            3578888888888 67888888888888888888643     367889999999999865  677888899999999999


Q ss_pred             HHccCCHHHHHHHHHHHHHhcCCChhh-------HHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHH
Q 008585          449 LLEAKPNSVREVAAQAISSLVTLPQNC-------REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM  521 (560)
Q Consensus       449 ll~s~~~~v~~~A~~aL~~L~~~~~~~-------~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i  521 (560)
                      .+..+++..+..|...+..+..++...       .+|..-...+..++.-|.+.+....-+.++.+..+|+.++..|..+
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL  255 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL  255 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999999999999998776542       3333323444555555555555567779999999999999888887


Q ss_pred             HHc---ChhHHHHHhhccCchhHHHHHHHHhc
Q 008585          522 ISY---GAIGYLKKLSEMDIPGARKLLERLER  550 (560)
Q Consensus       522 ~~~---g~i~~L~~L~~~~~~~akkl~~~l~~  550 (560)
                      ..+   +.-..--...-.+|+..|+.++-|-.
T Consensus       256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~  287 (293)
T KOG3036|consen  256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLK  287 (293)
T ss_pred             HhhCcchhccchHHHHHhcChhHHHHHHHHHH
Confidence            553   11111123334677888888776643

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.14  E-value=0.0011  Score=44.15  Aligned_cols=40  Identities=33%  Similarity=0.490  Sum_probs=36.3

Q ss_pred             hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                      ++++..+.+.|+++.|+.++.++++.++..++++|+|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4577889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.13  E-value=0.052  Score=50.74  Aligned_cols=171  Identities=19%  Similarity=0.225  Sum_probs=118.9

Q ss_pred             HHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhhhcC
Q 008585          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG  249 (560)
Q Consensus       177 ~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~  249 (560)
                      .|.+.....|+.+..+..+..--.|-.+|...     ....|-.++.+++.|...++  .-..+...+++|..++.++.|
T Consensus       101 ~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G  180 (293)
T KOG3036|consen  101 ALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG  180 (293)
T ss_pred             HHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc
Confidence            33344444777888888877766666776543     26789999999999998775  667778999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhCChhhHHHHHh--------CCChHH-HHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh---
Q 008585          250 STVGKEKATISLQRLSMSAEMARAIVG--------HGGVRP-LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE---  317 (560)
Q Consensus       250 ~~~~~~~a~~~L~~La~~~~~~~~l~~--------~g~i~~-Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e---  317 (560)
                      +...+..|..++.++-.++..-..+.+        ...+.. +..+.+.+++.+..++.++.-+|+.++..|..+..   
T Consensus       181 SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clP  260 (293)
T KOG3036|consen  181 SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLP  260 (293)
T ss_pred             cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCc
Confidence            999999999999999887766444432        111222 23344567888999999999999999988877754   


Q ss_pred             cCcHH-HHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          318 EGIVS-VMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       318 ~g~v~-~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      .+.-. .+..++.++.  ..+..-...+.|++.
T Consensus       261 d~Lrd~tfs~~l~~D~--~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  261 DQLRDGTFSLLLKDDP--ETKQWLQQLLKNLCT  291 (293)
T ss_pred             chhccchHHHHHhcCh--hHHHHHHHHHHHhcc
Confidence            11111 1223333333  455555555555543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.11  E-value=0.65  Score=51.31  Aligned_cols=169  Identities=12%  Similarity=0.118  Sum_probs=117.2

Q ss_pred             HccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHH
Q 008585          163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPL  242 (560)
Q Consensus       163 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L  242 (560)
                      +.+++...|.+|++.+..-...++...      -..+-+++...+.+.+++...=.-|...+...+....+    ++..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            556667778888876666554333211      12444555555667888887777777777665522222    46777


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHH
Q 008585          243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS  322 (560)
Q Consensus       243 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~  322 (560)
                      .+=+++.++.+|..|.+++..+-. ++....     .++++.+++.++++.+|+.|+-++.++-+.  ....+.+.|.+.
T Consensus        98 ~kDl~d~N~~iR~~AlR~ls~l~~-~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~  169 (757)
T COG5096          98 QKDLQDPNEEIRGFALRTLSLLRV-KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLID  169 (757)
T ss_pred             HhhccCCCHHHHHHHHHHHHhcCh-HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHH
Confidence            777888899999999998888733 222222     348888899999999999999999888642  224455677888


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585          323 VMIKLLDCGILLGSKEYAAECLQNLTAS  350 (560)
Q Consensus       323 ~L~~lL~~~~~~~v~~~a~~~L~~La~~  350 (560)
                      .+..++.+.++ .+..+|+.+|..+-..
T Consensus       170 ~l~~l~~D~dP-~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         170 ILKELVADSDP-IVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence            88888888887 7999999998888653

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.0044  Score=65.22  Aligned_cols=252  Identities=13%  Similarity=0.136  Sum_probs=164.4

Q ss_pred             hchHHH-HHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----
Q 008585          153 HGNTRE-LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG----  227 (560)
Q Consensus       153 ~~~i~~-Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~----  227 (560)
                      +..++. ++.....++..++..|+..|..|... -+-     ..-.....+++++..+.++|..|+..+...+.--    
T Consensus       196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~  269 (823)
T KOG2259|consen  196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL  269 (823)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence            334444 66677788899999999999888652 111     1124677888999988999999987777665422    


Q ss_pred             --c-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHH-HHHHHH
Q 008585          228 --S-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQA-AAACTL  302 (560)
Q Consensus       228 --~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~-~a~~aL  302 (560)
                        + ....+.+ .++..+.+.+++.+..+|-.|+..|+.+.. +++.-.+..+..++.    -++.  ..... ......
T Consensus       270 e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRR--kr~ahkrpk~l~  342 (823)
T KOG2259|consen  270 ERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRR--KRTAHKRPKALY  342 (823)
T ss_pred             cchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhh--hhhcccchHHHH
Confidence              1 2233333 368889999999999999999999998854 333333332222222    1111  00000 011111


Q ss_pred             HHh--c-------C-----CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH
Q 008585          303 KNI--S-------A-----VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL  368 (560)
Q Consensus       303 ~nL--a-------~-----~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~  368 (560)
                      .+-  +       .     .++--..++..|+--.++.=+++.-- +||..|...++.|+...+.....     .+.-|+
T Consensus       343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~-EVR~AAV~Sl~~La~ssP~FA~~-----aldfLv  416 (823)
T KOG2259|consen  343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY-EVRRAAVASLCSLATSSPGFAVR-----ALDFLV  416 (823)
T ss_pred             hcCCcccCccccccCchhhccccccccccccccceeeeechHHHH-HHHHHHHHHHHHHHcCCCCcHHH-----HHHHHH
Confidence            111  0       0     12334557778888888888888775 89999999999999987765432     377888


Q ss_pred             HhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008585          369 AYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV  427 (560)
Q Consensus       369 ~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L  427 (560)
                      .++++  ..++..|+.+|..++..    ..++...++.++..|...++++++..-..|.+.
T Consensus       417 DMfNDE~~~VRL~ai~aL~~Is~~----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  417 DMFNDEIEVVRLKAIFALTMISVH----LAIREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHH----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            88877  67899999999999862    112233467777777777777777666655554

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.047  Score=51.63  Aligned_cols=220  Identities=18%  Similarity=0.190  Sum_probs=133.7

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHHH
Q 008585          239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLA  316 (560)
Q Consensus       239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (560)
                      +..+.+...+++...+...+.+|..+..          ...++.|+..+.+  ..|.+|..|+.+|.++..         
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~---------   98 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD---------   98 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc---------
Confidence            5555555555555555566666666532          4456888888865  567788899999987762         


Q ss_pred             hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH-----HHH-H------hCCCHHHHHHhccC---C-ccHHHH
Q 008585          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR-----RSV-V------SEGGIRSLLAYLDG---P-LPQESA  380 (560)
Q Consensus       317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~-----~~i-~------~~g~l~~L~~ll~~---~-~~~~~a  380 (560)
                       ...++.+-++.+++.. .+++.+..++..+-..+..-.     .+. +      ..+-+..+-..+.+   + -.+..|
T Consensus        99 -~~~~~~l~k~~~dp~~-~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~a  176 (289)
T KOG0567|consen   99 -PESLEILTKYIKDPCK-EVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRA  176 (289)
T ss_pred             -hhhHHHHHHHhcCCcc-ccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhh
Confidence             2345666666655554 677777777777654221110     000 0      01113333333322   1 125567


Q ss_pred             HHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc--cCCHHHH
Q 008585          381 VGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE--AKPNSVR  458 (560)
Q Consensus       381 ~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~--s~~~~v~  458 (560)
                      +..|+|+...         ..|..|.+-+..++.-.|..++.+++.|-..          -.++.|.+.|.  ..++.+|
T Consensus       177 mF~LRn~g~E---------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVR  237 (289)
T KOG0567|consen  177 MFYLRNIGTE---------EAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVR  237 (289)
T ss_pred             hhHhhccCcH---------HHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHH
Confidence            7777776431         2366677777778888999999999998643          34777777775  3677899


Q ss_pred             HHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHH
Q 008585          459 EVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS  510 (560)
Q Consensus       459 ~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~  510 (560)
                      ..|++||..++  .+         ..++.|.+.+++. .+.+++.+..+|-.
T Consensus       238 hEaAeALGaIa--~e---------~~~~vL~e~~~D~-~~vv~esc~valdm  277 (289)
T KOG0567|consen  238 HEAAEALGAIA--DE---------DCVEVLKEYLGDE-ERVVRESCEVALDM  277 (289)
T ss_pred             HHHHHHHHhhc--CH---------HHHHHHHHHcCCc-HHHHHHHHHHHHHH
Confidence            99999999985  22         2344555556553 34566666655543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.05  E-value=0.0023  Score=66.63  Aligned_cols=256  Identities=13%  Similarity=0.108  Sum_probs=157.9

Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhH---HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA---RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM  314 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~---~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~  314 (560)
                      .+..++..|++.++.+|+.|+.....|+.--.++   ..+...|.  .|.+-+...+|++.-..+.+++.+...-..+..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            4566777888999999999999888886532221   12222232  355667778899988888887777543222211


Q ss_pred             H-HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH---HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhh
Q 008585          315 L-AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL---RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV  388 (560)
Q Consensus       315 i-~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~---~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla  388 (560)
                      - --.|++|.+..+|++.+. .++.+....++.++...++.   |+-+   ..--.|+..|.+  .+++.+|...++.++
T Consensus       683 qpPi~~ilP~ltPILrnkh~-Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQ-KVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             CCchhhccccccHhhhhhhH-HHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence            0 115789999999999997 89999999999999866541   1111   111224445544  578899999999998


Q ss_pred             ccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585          389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (560)
Q Consensus       389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L  468 (560)
                      ..-.++     .++..|++-|+..+...+....-+++-.+..   +-.   ..++|.|+.=...++..+|.-.+.+++.+
T Consensus       759 ~aiGPq-----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~---cgp---fsVlP~lm~dY~TPe~nVQnGvLkam~fm  827 (975)
T COG5181         759 RAIGPQ-----DVLDILLNNLKVQERQQRVCTSVAISIVAEY---CGP---FSVLPTLMSDYETPEANVQNGVLKAMCFM  827 (975)
T ss_pred             hhcCHH-----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---cCc---hhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence            743332     2355566656555544444444444444421   111   24677777777778888999999999998


Q ss_pred             cCCChhh-HHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585          469 VTLPQNC-REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (560)
Q Consensus       469 ~~~~~~~-~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~  513 (560)
                      ...-.+. ...+-  -..+.|-..|.+.+ ...+..+...+.+|+-
T Consensus       828 Feyig~~s~dYvy--~itPlleDAltDrD-~vhRqta~nvI~Hl~L  870 (975)
T COG5181         828 FEYIGQASLDYVY--SITPLLEDALTDRD-PVHRQTAMNVIRHLVL  870 (975)
T ss_pred             HHHHHHHHHHHHH--HhhHHHHhhhcccc-hHHHHHHHHHHHHHhc
Confidence            7443332 22221  12233444444442 2356667777776664

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.00  E-value=0.0025  Score=60.91  Aligned_cols=175  Identities=21%  Similarity=0.186  Sum_probs=106.6

Q ss_pred             cCCchhHHHHHHHHHHHHccCC--hhHHHHHHh--CCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCc
Q 008585          330 CGILLGSKEYAAECLQNLTASN--ENLRRSVVS--EGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGF  401 (560)
Q Consensus       330 ~~~~~~v~~~a~~~L~~La~~~--~~~~~~i~~--~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~  401 (560)
                      +.+. ..+..++.-|..+..++  ......+++  ...+..+...+.+  ..+...|+.++..++.  ....+.. -..+
T Consensus        18 ~~~W-~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   18 ESDW-EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             -SSH-HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             ccCH-HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            3444 78889999999998765  222222222  1344556666655  5678899999999987  2222222 3456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCChh-HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh----hhH
Q 008585          402 FPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ----NCR  476 (560)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~-~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~----~~~  476 (560)
                      ++.|+..+.++...++..|..+|..++.+.. ..+.+     .+.+.....++++.+|..++..+..+....+    ...
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            8889999999889999999999999997643 22222     5667777889999999999999999984433    111


Q ss_pred             HHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          477 EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       477 ~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      ....-...++.+...+.+.+ ..++.++-.++..+.
T Consensus       171 ~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDAD-PEVREAARECLWALY  205 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHH
Confidence            11000234577788888774 458889888888774

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.99  E-value=0.18  Score=55.92  Aligned_cols=308  Identities=17%  Similarity=0.146  Sum_probs=183.9

Q ss_pred             hhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585          150 ATTHGNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       150 ~~~~~~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (560)
                      +++...++.....+- ...+.++..++..+..++..-+.   .....+.++.+.++.......+|+.|...+..+...-.
T Consensus       232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~  308 (759)
T KOG0211|consen  232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD  308 (759)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence            556667777777774 44566777778888888764432   45566889999999988888999999988888876432


Q ss_pred             hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-
Q 008585          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-  307 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-  307 (560)
                      ..... .....+.+++..++++..++.........+...-+.  ......-+++...++++...+.+...+.-...++. 
T Consensus       309 ~~~d~-~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~  385 (759)
T KOG0211|consen  309 DDDDV-VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY  385 (759)
T ss_pred             Cchhh-hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence            21111 123678899999999999988888777777543111  22223345677788887777777776666666654 


Q ss_pred             -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (560)
Q Consensus       308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L  384 (560)
                       +.+....+....++|.+-.+..+... .++...+..+.++.--.+..+  - -.-..+.+...+.+  +.++.+-...+
T Consensus       386 l~~~~~~~i~~~~ilp~~~~lv~d~~~-~vr~a~a~~~~~~~p~~~k~~--t-i~~llp~~~~~l~de~~~V~lnli~~l  461 (759)
T KOG0211|consen  386 LNASCYPNIPDSSILPEVQVLVLDNAL-HVRSALASVITGLSPILPKER--T-ISELLPLLIGNLKDEDPIVRLNLIDKL  461 (759)
T ss_pred             cCcccccccchhhhhHHHHHHHhcccc-hHHHHHhccccccCccCCcCc--C-ccccChhhhhhcchhhHHHHHhhHHHH
Confidence             33455556666678888888877775 677777666666543221000  0 01113333333433  45555555444


Q ss_pred             HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHH
Q 008585          385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA  462 (560)
Q Consensus       385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~  462 (560)
                      ..+-.  ............++.++.+-......++....+.+..++....  ..+.+...-+.+...+.+.-..+|+.|+
T Consensus       462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa  539 (759)
T KOG0211|consen  462 SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAA  539 (759)
T ss_pred             HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence            33322  1111222334445555555554556666777777766664322  2222222334444444444556777777


Q ss_pred             HHHHHhc
Q 008585          463 QAISSLV  469 (560)
Q Consensus       463 ~aL~~L~  469 (560)
                      ..+..++
T Consensus       540 ~~l~~l~  546 (759)
T KOG0211|consen  540 RNLPALV  546 (759)
T ss_pred             HHhHHHH
Confidence            7777776

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.97  E-value=0.0016  Score=46.81  Aligned_cols=55  Identities=22%  Similarity=0.069  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585          292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL  347 (560)
Q Consensus       292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L  347 (560)
                      |.+|..|+++|.+++........-....+++.|+.+|+++++ .||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~-~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD-SVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH-HHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhcC
Confidence            578999999999998654333333445689999999998887 8999999999875

...

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.15  Score=54.88  Aligned_cols=310  Identities=14%  Similarity=0.122  Sum_probs=173.9

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCC----chHHH
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAESG----SCENW  232 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~----~~~~~  232 (560)
                      ++...|..|+.+.+.+|++.+..+...++..-      +.+-.+++ .|.+.+.+++..- ...+.+.-..    ...+.
T Consensus        24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p------~Llm~IiRfvlps~~~elKKLl-y~ywE~vPKt~~dgkl~~E   96 (948)
T KOG1058|consen   24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLP------SLLMTIIRFVLPSRNHELKKLL-YYYWELVPKTDSDGKLLHE   96 (948)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHcCCCch------HHHHHHhheeeccCchHHHHHH-HHHHHHccccCCCcccHHH
Confidence            56677899999999999998877765444221      11122222 2334455554433 3333343221    12222


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (560)
                      ++=  +...+-+=|+.++..+|....+.|++|-. ++....     .+|.+...|.+..+-+|++|..++..+-.+.   
T Consensus        97 MIL--vcna~RkDLQHPNEyiRG~TLRFLckLkE-~ELlep-----l~p~IracleHrhsYVRrNAilaifsIyk~~---  165 (948)
T KOG1058|consen   97 MIL--VCNAYRKDLQHPNEYIRGSTLRFLCKLKE-PELLEP-----LMPSIRACLEHRHSYVRRNAILAIFSIYKNF---  165 (948)
T ss_pred             HHH--HHHHHhhhccCchHhhcchhhhhhhhcCc-HHHhhh-----hHHHHHHHHhCcchhhhhhhheeehhHHhhh---
Confidence            211  23444455777899999999999999843 333332     3477777788899999999998887765431   


Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-----CccHHHHHHHHHHh
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNL  387 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-----~~~~~~a~~~L~nl  387 (560)
                      ..+. ..+-..+-++|..+.+...+++|...|...   +++..        +..+...++.     +..+...+..|+..
T Consensus       166 ~~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~ErA--------l~Yl~~~idqi~~~~~~LqlViVE~Irkv  233 (948)
T KOG1058|consen  166 EHLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPERA--------LNYLLSNIDQIPSFNDSLQLVIVELIRKV  233 (948)
T ss_pred             hhhc-CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHHH--------HHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence            1111 223344445554444336778877766543   23321        3333333322     33455566666666


Q ss_pred             hc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHH
Q 008585          388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAI  465 (560)
Q Consensus       388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL  465 (560)
                      |. ....    +..++..+..+|.+.++.|.-+|+.+|.+++..+..-+.-     ...+++++.. .+..++.....-|
T Consensus       234 ~~~~p~~----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl  304 (948)
T KOG1058|consen  234 CLANPAE----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRL  304 (948)
T ss_pred             HhcCHHH----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHH
Confidence            65 1121    3567899999999989999999999999988876655544     3334444432 2333443333334


Q ss_pred             HHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      ..+.   .+.+.+++  +.+...++.|++.+- +++.-++.+...|.
T Consensus       305 ~~l~---~~~~~il~--~l~mDvLrvLss~dl-dvr~Ktldi~ldLv  345 (948)
T KOG1058|consen  305 SELK---ALHEKILQ--GLIMDVLRVLSSPDL-DVRSKTLDIALDLV  345 (948)
T ss_pred             HHHh---hhhHHHHH--HHHHHHHHHcCcccc-cHHHHHHHHHHhhh
Confidence            4442   23333343  445566666666533 24444554444443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.16  Score=54.91  Aligned_cols=138  Identities=15%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc--cccHHHH
Q 008585          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG--SVSQEVL  396 (560)
Q Consensus       319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~--~~~~~~l  396 (560)
                      +.+.-|..+|......+-+.....++..+...++..++     .++..|..++.+.....-+.+.|.-+..  +...   
T Consensus       391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~---  462 (865)
T KOG1078|consen  391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAP---  462 (865)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccCCCCC---
Confidence            34555666665533335677777777777776665443     3477888888887788888888888876  2111   


Q ss_pred             HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       397 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      .....+..+.+.+--.+..++..|..++.+++.. +..+..     ..-.|.+.+.+.+.++|+.|..+|..+-
T Consensus       463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~s-----I~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPS-----ILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcccc-----HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            1234566666666667889999999999999833 333322     3556777778899999999999999985

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.92  E-value=0.0026  Score=42.34  Aligned_cols=39  Identities=21%  Similarity=0.346  Sum_probs=35.3

Q ss_pred             HHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008585          187 KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE  225 (560)
Q Consensus       187 ~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~  225 (560)
                      +++..+++.|+++.|++++++++++++..++++|.+|+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            466788899999999999999899999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.86  E-value=0.022  Score=61.64  Aligned_cols=236  Identities=19%  Similarity=0.160  Sum_probs=154.7

Q ss_pred             CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHH-HhhCChhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHH
Q 008585          227 GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQ-RLSMSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKN  304 (560)
Q Consensus       227 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~n  304 (560)
                      ..-+...++.|+...|+++...+.+..+.....+|. .+....+-.     ...++++...+..... .-...++.++.|
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altn  568 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTN  568 (748)
T ss_pred             HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence            336777889999999999999888888888777777 333322211     1233555555443221 123568999999


Q ss_pred             hcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--CccHHHH
Q 008585          305 ISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--PLPQESA  380 (560)
Q Consensus       305 La~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--~~~~~~a  380 (560)
                      |+. ++..++.+..+..++.+-.++...++ ..|..++.++.||..+..-..+.+++ ...++.....++.  ......+
T Consensus       569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  569 LASISESDRQKILKEKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             ccCcchhhHHHHHHHhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            987 45677778887777777777766765 79999999999999987666666666 4455555555544  2333344


Q ss_pred             HHHHHHhhc---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585          381 VGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS  456 (560)
Q Consensus       381 ~~~L~nla~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~  456 (560)
                      .+++..++.   ..+............++.++.++++++|......+.|+... .+....+.....++.+..+-.-....
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~  727 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP  727 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence            444443433   11221333456688889999999999999999999996533 56666666666666666655544444


Q ss_pred             HHHHHHHHHHHh
Q 008585          457 VREVAAQAISSL  468 (560)
Q Consensus       457 v~~~A~~aL~~L  468 (560)
                      .++.+..+|...
T Consensus       728 ~~~~~~~~l~~a  739 (748)
T KOG4151|consen  728 KREDAAPCLSAA  739 (748)
T ss_pred             hhhhhhhHHHHH
Confidence            555555555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.82  E-value=0.1  Score=59.02  Aligned_cols=262  Identities=15%  Similarity=0.118  Sum_probs=161.0

Q ss_pred             hHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC----Cc
Q 008585          155 NTRELLARLQI-GHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES----GS  228 (560)
Q Consensus       155 ~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~----~~  228 (560)
                      .+.-+...++. ...+.|.+|+.-|..++..- ++.+    -...+|.++.++..+..++|..|+.+|..+-..    +.
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            45555566643 44677999999998887532 2221    125799999999999999999999888887542    22


Q ss_pred             hHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhh----HHHHHh-------------------------CC
Q 008585          229 CENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEM----ARAIVG-------------------------HG  278 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~----~~~l~~-------------------------~g  278 (560)
                      .-..+.-+-.+|.|-.++.+ ....+|..-+.+|..|+...-.    ...+..                         ++
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            44455666688999999988 4445666656666666532100    001000                         11


Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhc----CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585          279 GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE----GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (560)
Q Consensus       279 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~----g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~  354 (560)
                      +-.....+|.++++.+++.-+..|.-||      ..|...    =+++.|+.+|++.+. .+|-.=...+.-++..   +
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ksND~iLshLiTfLNDkDw-~LR~aFfdsI~gvsi~---V  648 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKSNDVILSHLITFLNDKDW-RLRGAFFDSIVGVSIF---V  648 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcccccchHHHHHHHhcCccH-HHHHHHHhhccceEEE---E
Confidence            2223445566666677777666666554      334432    257777788887764 5554333333322221   0


Q ss_pred             HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       355 ~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~  430 (560)
                      -..-++...+|.|.+-|.+  +-+...|+++|..|+.....+...-..+++....+|-+++.-++..++..|...++.
T Consensus       649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            0111233447777777866  557889999999998732222222233455566677788999999999999888754

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.79  E-value=0.002  Score=46.27  Aligned_cols=55  Identities=25%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585          251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (560)
Q Consensus       251 ~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (560)
                      +.+|..|+++|.+++........-....+++.|+.+++++++.+|..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999987655544445667889999999999999999999999875

...

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.78  E-value=0.24  Score=51.87  Aligned_cols=300  Identities=17%  Similarity=0.144  Sum_probs=147.4

Q ss_pred             HHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHH
Q 008585          176 DSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKE  255 (560)
Q Consensus       176 ~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~  255 (560)
                      +...++..++++....     ..|.|-..|++.-..++..+++.+..++...-. ..+++ ..+..|-.+|++.....|-
T Consensus       249 r~~~~ll~~n~q~~~q-----~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~~-~~vs~L~~fL~s~rv~~rF  321 (898)
T COG5240         249 RATVELLKENSQALLQ-----LRPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQFVD-QTVSSLRTFLKSTRVVLRF  321 (898)
T ss_pred             HHHHHHHHhChHHHHH-----HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HHHHH-HHHHHHHHHHhcchHHHHH
Confidence            3444455444433222     244555556555467788888888888765421 11111 1466677778888888888


Q ss_pred             HHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchh
Q 008585          256 KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLG  335 (560)
Q Consensus       256 ~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~  335 (560)
                      .|.++|..|+...+.+...+.    +.+=.+..+.+..+-..|..+|..- .++++...++.  .|+.+++=+.+    .
T Consensus       322 sA~Riln~lam~~P~kv~vcN----~evEsLIsd~Nr~IstyAITtLLKT-Gt~e~idrLv~--~I~sfvhD~SD----~  390 (898)
T COG5240         322 SAMRILNQLAMKYPQKVSVCN----KEVESLISDENRTISTYAITTLLKT-GTEETIDRLVN--LIPSFVHDMSD----G  390 (898)
T ss_pred             HHHHHHHHHHhhCCceeeecC----hhHHHHhhcccccchHHHHHHHHHc-CchhhHHHHHH--HHHHHHHhhcc----C
Confidence            999999999876544433322    2222444455555544555444332 23344333322  23333333332    3


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHh
Q 008585          336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLK  410 (560)
Q Consensus       336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~  410 (560)
                      .+..+..++..|+...+.-+..+     +.-|...|.+   -+....++.+|..+..  ++.++     ..+..|..++.
T Consensus       391 FKiI~ida~rsLsl~Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIE  460 (898)
T COG5240         391 FKIIAIDALRSLSLLFPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIE  460 (898)
T ss_pred             ceEEeHHHHHHHHhhCcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHh
Confidence            34444555555554334322222     1222222211   1223334444444433  22221     22344444443


Q ss_pred             cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHH
Q 008585          411 AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV  489 (560)
Q Consensus       411 ~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv  489 (560)
                      +..  -.+.+.+.|+-|... |.....   ...+.++..-+--.+.-+|..|..||...+.+..+....   ......|-
T Consensus       461 Dce--y~~I~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~---~sv~~~lk  532 (898)
T COG5240         461 DCE--YHQITVRILGILGREGPRAKTP---GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP---QSVENALK  532 (898)
T ss_pred             hcc--hhHHHHHHHHHhcccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH---HHHHHHHH
Confidence            321  122233344444321 110000   012344444444467789999999999998654442110   01225566


Q ss_pred             hccCCCCchhhHHHHHHHHHHhC
Q 008585          490 QLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       490 ~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      +.+++.+ ++++..|.-.+.++-
T Consensus       533 RclnD~D-deVRdrAsf~l~~~~  554 (898)
T COG5240         533 RCLNDQD-DEVRDRASFLLRNMR  554 (898)
T ss_pred             HHhhccc-HHHHHHHHHHHHhhh
Confidence            7777764 457888877777774

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.78  E-value=0.73  Score=50.90  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=111.8

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      +....++.++...+.|.|.|+-.-..|...++.+|+-...     .+..+.+=++++++.+|-.|++.++.+-...    
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~iR~~AlR~ls~l~~~e----  123 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE----  123 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHHHHHHHHHHHHhcChHH----
Confidence            5556777788778888888888878888888877733221     4777888889999999999999998875432    


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                       +. ...++++.++++++++.+|..|+-++.++-. ++   ..+.+.|.+..+..++.+.+|.+...|..+|..+-.
T Consensus       124 -l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         124 -LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             -HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence             11 2368999999999999999999999999953 33   334456777888888999999999999999998864

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.71  E-value=0.28  Score=47.74  Aligned_cols=226  Identities=15%  Similarity=0.065  Sum_probs=144.7

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCC-CHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhhHHHHHh-CC
Q 008585          203 QLLTATSPRIREKTVTVICSLAESGSCENWLVSEG-VLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVG-HG  278 (560)
Q Consensus       203 ~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g-~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~l~~-~g  278 (560)
                      ++++.-++-.+-.|+.++.++....+.|..+-.++ .-..++.++++.  ...+|.+..-+++-++.+++.++.+-. ..
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d  235 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34444456678899999999999998777665544 455677777764  678899999999999999988754432 34


Q ss_pred             ChHHHHHHhcc-CChHHHHHHHHHHHHhcC-Cc-hhHHHHHhcC-cHHHHHHHhhcCC-chhHHHHHHH-----------
Q 008585          279 GVRPLIEICQT-GDSVSQAAAACTLKNISA-VP-EVRQMLAEEG-IVSVMIKLLDCGI-LLGSKEYAAE-----------  342 (560)
Q Consensus       279 ~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~-~~-~~~~~i~e~g-~v~~L~~lL~~~~-~~~v~~~a~~-----------  342 (560)
                      .+..|+.+.+. ....+-+.++.++.|++. .+ +....+.-.| +.++.--+++.+- +.+++...-.           
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            55667777765 345667889999999986 32 3333333334 5555444443221 1122221111           


Q ss_pred             ------HHHHHcc-----CCh--------hHHHHHHhCC--CHHHHHHhccC--Cc-cHHHHHHHHHHhhc--cccHHHH
Q 008585          343 ------CLQNLTA-----SNE--------NLRRSVVSEG--GIRSLLAYLDG--PL-PQESAVGALRNLVG--SVSQEVL  396 (560)
Q Consensus       343 ------~L~~La~-----~~~--------~~~~~i~~~g--~l~~L~~ll~~--~~-~~~~a~~~L~nla~--~~~~~~l  396 (560)
                            .+.+|-+     +.+        .+...+.+.+  .+..|.++++.  +. ....|+.=|..+.+  |+....+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence                  1111111     000        0122222222  36677777765  33 34456666677766  7888888


Q ss_pred             HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       397 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      ...|+-..+++++++++++|+-+|..++..+-
T Consensus       396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999999999887654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.69  E-value=0.0074  Score=49.00  Aligned_cols=67  Identities=15%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHHHHHHh
Q 008585          294 SQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRRSVVS  360 (560)
Q Consensus       294 ~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (560)
                      .+.....+|.|++. ++.++..+.+.|+++.++.... ++..+.++++|+.++.||+.+++++++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            35677889999995 7799999999999999988754 2333489999999999999999999876654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.64  E-value=0.076  Score=50.57  Aligned_cols=214  Identities=15%  Similarity=0.143  Sum_probs=146.4

Q ss_pred             hHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhc-------cCCcc-------HHHHHHHHHHhhc-cccHHHHHh
Q 008585          335 GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL-------DGPLP-------QESAVGALRNLVG-SVSQEVLIS  398 (560)
Q Consensus       335 ~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll-------~~~~~-------~~~a~~~L~nla~-~~~~~~l~~  398 (560)
                      +.|+.|+.-|..--...++....+.+ -|.+..|++=+       ..+..       .-+|+..+..++. ++.+..+++
T Consensus        10 ~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~   89 (262)
T PF04078_consen   10 ETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLK   89 (262)
T ss_dssp             HHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHH
T ss_pred             chHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            56888877777666666677666665 45555555543       22221       2467777888888 788999999


Q ss_pred             CCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      .++.-.|..+|+..+     ..++-.+..+++.+...  ++....+.+.+.+|..++.++.+++-.+..|...+..+..+
T Consensus        90 a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d  169 (262)
T PF04078_consen   90 AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD  169 (262)
T ss_dssp             TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred             cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            999888888887643     57888999999999974  77888999999999999999999998999999999998866


Q ss_pred             ChhhHH-------HhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHH----hhccCchh
Q 008585          472 PQNCRE-------VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKK----LSEMDIPG  540 (560)
Q Consensus       472 ~~~~~~-------~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~----L~~~~~~~  540 (560)
                      +.....       |..=...+..++.-+...+....-++.+.|...|+.++..|..+... .-..|.+    -.-.+|+.
T Consensus       170 d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~-LP~~Lrd~~f~~~l~~D~~  248 (262)
T PF04078_consen  170 DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQC-LPDQLRDGTFSNILKDDPS  248 (262)
T ss_dssp             HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHH-S-GGGTSSTTTTGGCS-HH
T ss_pred             hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHh-CcHHHhcHHHHHHHhcCHH
Confidence            654332       22222344555544444444457779999999999999999888651 1111211    11134677


Q ss_pred             HHHHHHHHh
Q 008585          541 ARKLLERLE  549 (560)
Q Consensus       541 akkl~~~l~  549 (560)
                      .|+.++.|-
T Consensus       249 ~k~~l~qLl  257 (262)
T PF04078_consen  249 TKRWLQQLL  257 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777664

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.43  E-value=0.021  Score=58.16  Aligned_cols=294  Identities=17%  Similarity=0.106  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC------CchHHHHHhCCCHHH
Q 008585          168 LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES------GSCENWLVSEGVLPP  241 (560)
Q Consensus       168 ~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~------~~~~~~l~~~g~i~~  241 (560)
                      ..++.+|+..|.-++..-.-.+..+++  ....+..-+...++.+++.++.++..+...      ++..+.-...|.+-.
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            456888888887776432211111111  122233334556799999999998887642      121111111121111


Q ss_pred             HH------Hhh-hcCCHHHHHHHHHHHHHhhCC-----hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCC
Q 008585          242 LI------RLV-ESGSTVGKEKATISLQRLSMS-----AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV  308 (560)
Q Consensus       242 Lv------~lL-~~~~~~~~~~a~~~L~~La~~-----~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~  308 (560)
                      +.      ... .+..+..+...|..+.++...     ++.++..     .+.+..=|.+ ++.-++..|.+++.-+.-+
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~-----~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH  421 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTL-----CITFLLGCNDSKNRLVKAAASRALGVYVLH  421 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhh-----hHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence            11      011 112334556677777777431     1212111     0122222222 2233455666666555556


Q ss_pred             chhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc----CChhHHHHHHhC-C-CHHHHHHhc-----cCCcc
Q 008585          309 PEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA----SNENLRRSVVSE-G-GIRSLLAYL-----DGPLP  376 (560)
Q Consensus       309 ~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~----~~~~~~~~i~~~-g-~l~~L~~ll-----~~~~~  376 (560)
                      +..+....- ..+...+...+.+..- .+|+.+.++++||+.    +-+..+..--+. | .+..+++.-     +..++
T Consensus       422 p~lr~d~~fv~~aa~~il~sl~d~~l-n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV  500 (728)
T KOG4535|consen  422 PCLRQDVIFVADAANAILMSLEDKSL-NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKV  500 (728)
T ss_pred             cchhhhHHHHHHHHHHHHHHhhhHhH-hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            655544332 3444445555555443 689999999999986    222211111111 1 122222221     12678


Q ss_pred             HHHHHHHHHHhhc--c---ccHHHHHhCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHhCChhH--HHHHHhcCCHHHHHH
Q 008585          377 QESAVGALRNLVG--S---VSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALCRVCTSAEM--KKLVGEAGCTPLLIK  448 (560)
Q Consensus       377 ~~~a~~~L~nla~--~---~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~~La~~~~~--~~~i~~~g~i~~Lv~  448 (560)
                      +.+++++|+|+..  .   +..-.....+.+..+.. ..-.+...||.+|+.+++||..++..  +..=+.....+.|..
T Consensus       501 ~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~  580 (728)
T KOG4535|consen  501 KSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTS  580 (728)
T ss_pred             hhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHH
Confidence            9999999999986  1   11111122333333332 22235678999999999999987543  111122235677777


Q ss_pred             HHc-cCCHHHHHHHHHHHHHhc
Q 008585          449 LLE-AKPNSVREVAAQAISSLV  469 (560)
Q Consensus       449 ll~-s~~~~v~~~A~~aL~~L~  469 (560)
                      ++. ..|..+|..|+.+|..-.
T Consensus       581 Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  581 LVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             HHHHhccceEeehhhhhhcCCC
Confidence            775 477889999999887665

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.40  E-value=0.032  Score=49.81  Aligned_cols=143  Identities=22%  Similarity=0.259  Sum_probs=96.8

Q ss_pred             HHHHHHHhhc-CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--c-ccHH
Q 008585          321 VSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--S-VSQE  394 (560)
Q Consensus       321 v~~L~~lL~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~-~~~~  394 (560)
                      +..++..+.. ..+.++|..+.-++..+-   +..++.. ..-.-..+-..+..  .+....++.++..+-.  + .+..
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            4455555554 222378999998888873   2222221 11112222233333  5567778888887776  3 3445


Q ss_pred             HHHhCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-cCCHH-HHHHHHHHHHHh
Q 008585          395 VLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNS-VREVAAQAISSL  468 (560)
Q Consensus       395 ~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-s~~~~-v~~~A~~aL~~L  468 (560)
                      .+...|+++.++.++.  ..+..++..++.+|..-|.+...|..+.+.| ++.|.++++ ++++. +|..|+-+|+.|
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            5567899999999999  7889999999999999888888888877765 999999995 56566 899998888764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.40  E-value=0.15  Score=52.13  Aligned_cols=188  Identities=17%  Similarity=0.165  Sum_probs=125.5

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhCh---HHHHHHhhCCCHHHHHHhhcCCC-------HHHHHHHHHHHHHHhcC
Q 008585          157 RELLARLQIGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSNIAALVQLLTATS-------PRIREKTVTVICSLAES  226 (560)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~---~~~~~i~~~g~v~~Lv~lL~~~~-------~~v~~~A~~~L~~La~~  226 (560)
                      .++...+...+.+.+..|+--...+.+.++   .+++.+.+.-|.+.+-++|.+.+       .-.+..++.+|..++..
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            346666677777888888888888887655   45667888888888888887542       33466788899999998


Q ss_pred             Cc--hHHHHHhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChH-HHH
Q 008585          227 GS--CENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV-SQA  296 (560)
Q Consensus       227 ~~--~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~-~~~  296 (560)
                      ++  ..+.+++  .||.|..++..+       +..+.+.+-.||..++..+.....+...|+++.+.++-.-++-. -+.
T Consensus        94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a  171 (698)
T KOG2611|consen   94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA  171 (698)
T ss_pred             hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence            87  4556655  589999998754       22367788899999999988999999999999998776543222 222


Q ss_pred             HHHHHHHHhc----CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          297 AAACTLKNIS----AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       297 ~a~~aL~nLa----~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      .++.++--+.    ..++.-..+..  .+..+..=+...++ ..+...+..|..+-.
T Consensus       172 lal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~-a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHN-ALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhh-HHHHHHHHHHHHHHh
Confidence            2333322221    12333333322  13333333344454 678888888886544

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.28  Score=56.92  Aligned_cols=395  Identities=15%  Similarity=0.116  Sum_probs=207.2

Q ss_pred             hHHhhhhhhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhhhchHHHHHHHHccCCHH-------------------
Q 008585          109 LDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLE-------------------  169 (560)
Q Consensus       109 ~~~~~~~l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~i~~Ll~~L~~~~~~-------------------  169 (560)
                      ...+..+|...+.|=+++.+--.. .+-.+|-..+..    ......+..|+..|..|...                   
T Consensus       859 ~~eI~~aF~~~Lsd~dEf~QDvAs-rGlglVYelgd~----~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~T  933 (1702)
T KOG0915|consen  859 LKEIQEAFSHLLSDNDEFSQDVAS-RGLGLVYELGDS----SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKT  933 (1702)
T ss_pred             cHHHHHHHHHHhcccHHHHHHHHh-cCceEEEecCCc----hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCC
Confidence            334556666667776666653221 222344444322    22344566666666322211                   


Q ss_pred             ---HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHH
Q 008585          170 ---AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLI  243 (560)
Q Consensus       170 ---~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv  243 (560)
                         -+...-+.|++|+++-.       +.+.|=..+++-+++. ..-+.-|+-.++.++....  .+..+.  ..||.|.
T Consensus       934 p~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~--kLIPrLy 1004 (1702)
T KOG0915|consen  934 PDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK--KLIPRLY 1004 (1702)
T ss_pred             CCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH--HhhHHHh
Confidence               02334455666654311       2233444555655543 5667777777787776542  222222  2688888


Q ss_pred             HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc---hhHHHHHhcCc
Q 008585          244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP---EVRQMLAEEGI  320 (560)
Q Consensus       244 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~---~~~~~i~e~g~  320 (560)
                      +.=-+++..++..-..+...|..++.....-.-..+++.|+.-|.+..+.+|..+|-||..|-...   +..+.+-  ..
T Consensus      1005 RY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--el 1082 (1702)
T KOG0915|consen 1005 RYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--EL 1082 (1702)
T ss_pred             hhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HH
Confidence            888888998888777777777777555444444566688888888899999999999999998644   3334443  35


Q ss_pred             HHHHHHHhhcCCchhHHHHH---HHHHHHHccCChhHHHHHHhCCCHHHHHHhcc------C-CccHHHHHHHHHHhhcc
Q 008585          321 VSVMIKLLDCGILLGSKEYA---AECLQNLTASNENLRRSVVSEGGIRSLLAYLD------G-PLPQESAVGALRNLVGS  390 (560)
Q Consensus       321 v~~L~~lL~~~~~~~v~~~a---~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~------~-~~~~~~a~~~L~nla~~  390 (560)
                      ...++..+++-.+ .||+.+   +.+|..++...-+.-.-.-....+..++.++-      . +.++..++..+.-|+..
T Consensus      1083 w~~~fRvmDDIKE-sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1083 WEAAFRVMDDIKE-SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh
Confidence            5556666655443 566664   55555554310000000000112344444431      1 56788899999888873


Q ss_pred             ccHHHH-HhCCcHHHHHHHHhcCCH-----------HHHHHHHHHHHH-HhCChhHHHHH----------HhcCCHHHHH
Q 008585          391 VSQEVL-ISLGFFPRLVHVLKAGSL-----------GAQQAAASALCR-VCTSAEMKKLV----------GEAGCTPLLI  447 (560)
Q Consensus       391 ~~~~~l-~~~~~i~~Lv~lL~~~~~-----------~v~~~A~~aL~~-La~~~~~~~~i----------~~~g~i~~Lv  447 (560)
                      .....- .-...|+.|++....-++           ....+|...++. .+.+...-..+          .-...+|.+.
T Consensus      1162 sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1162 SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLT 1241 (1702)
T ss_pred             chhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            222100 111234444444433222           333444444442 23331111111          1124677888


Q ss_pred             HHHccC-CHHHHHHHHHHHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC--ChhhHHHHHH
Q 008585          448 KLLEAK-PNSVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP--SKKCKKLMIS  523 (560)
Q Consensus       448 ~ll~s~-~~~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~--~~~~r~~i~~  523 (560)
                      +++.+. .-..+..++..++.|+ ......+.+.  ++.+..++..+.+.+.. ++++...+...|++  +++.-.++++
T Consensus      1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dRNes-v~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDRNES-VRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred             HHHhccCCCCcchhHHHHHHHHHHHhccccCcch--hHHHHHHhhccccccHH-HHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            888642 4446677777777776 2233333322  24456666666665443 44454444444443  3433334433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.33  E-value=0.3  Score=50.28  Aligned_cols=128  Identities=9%  Similarity=0.114  Sum_probs=96.2

Q ss_pred             HHh-CCCHHHHHHhhhcC---CHHHHHHHHHHHHHhhCChhh-HHHHHhCCChHHHHHHhc-c---CChHHHHHHHHHHH
Q 008585          233 LVS-EGVLPPLIRLVESG---STVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQ-T---GDSVSQAAAACTLK  303 (560)
Q Consensus       233 l~~-~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~-~~~l~~~g~i~~Lv~ll~-~---~~~~~~~~a~~aL~  303 (560)
                      +++ ...+..|..+++..   .+.+-..|+.++..+..+++. -..+.+.|.++.+++.+. .   ++.++....-.+|.
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            444 44556666677765   566778888999998877555 456778999999999887 4   45677777788888


Q ss_pred             HhcCCchhHHHHHhcCcHHHHHHHhhcCCch------hHHHHHHHHHHHHccCChhHHHHHHh
Q 008585          304 NISAVPEVRQMLAEEGIVSVMIKLLDCGILL------GSKEYAAECLQNLTASNENLRRSVVS  360 (560)
Q Consensus       304 nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~------~v~~~a~~~L~~La~~~~~~~~~i~~  360 (560)
                      -+|-|+...+.+.+.+.++.+++++.+.+..      +.-...-..+-+|.++.+.+|..+++
T Consensus       181 AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  181 AICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            8999999999999999999999998765421      23334455677888888888877755

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.30  E-value=0.019  Score=46.60  Aligned_cols=64  Identities=17%  Similarity=0.347  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhc--cCChHHHHHHHHHHHHhcC-CchhHHHHHh
Q 008585          254 KEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQ--TGDSVSQAAAACTLKNISA-VPEVRQMLAE  317 (560)
Q Consensus       254 ~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~--~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e  317 (560)
                      +.....+|.+|+.. +.++..+.+.||++.++..|.  +.+|-++.+|..+++||+. ++++++.+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            45677899999874 888999999999999999986  4689999999999999996 6689888876

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.29  E-value=0.36  Score=45.85  Aligned_cols=104  Identities=24%  Similarity=0.264  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc-
Q 008585          335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA-  411 (560)
Q Consensus       335 ~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~-  411 (560)
                      .-++.+...|.|+-.  +..         +..+.+-+..  .-.|-.+..+++.|-.         .-.|+.|.+.|.. 
T Consensus       171 ~~Ry~amF~LRn~g~--Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s---------~~ai~~L~k~L~d~  230 (289)
T KOG0567|consen  171 FERYRAMFYLRNIGT--EEA---------INALIDGLADDSALFRHEVAFVFGQLQS---------PAAIPSLIKVLLDE  230 (289)
T ss_pred             HHHHhhhhHhhccCc--HHH---------HHHHHHhcccchHHHHHHHHHHHhhccc---------hhhhHHHHHHHHhh
Confidence            346667777777643  221         3333333322  3356677777777743         3358888888865 


Q ss_pred             -CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585          412 -GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (560)
Q Consensus       412 -~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L  468 (560)
                       .++-|+..|+.+|+.++..          .+++.|.+.+....+-+++.+..+|-.+
T Consensus       231 ~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  231 TEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             hcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence             5699999999999999853          5678888888888788888888877665

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.24  E-value=1.3  Score=49.73  Aligned_cols=216  Identities=15%  Similarity=0.187  Sum_probs=134.0

Q ss_pred             HhhCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh----cCC----HHHHHHHH
Q 008585          192 VMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE----SGS----TVGKEKAT  258 (560)
Q Consensus       192 i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~----~~~----~~~~~~a~  258 (560)
                      +.+.||+..+++++.+-     ....-...+..|...+.-..+|+.+++.|+++.|+..+.    ...    ..+-+...
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            44679999999998763     245566677888888888889999999999999999875    323    56666666


Q ss_pred             HHHHHhhCChhh--H---HHHHhCC-----C---hHHHHHHhcc----CChHHHHHHHHHHHHhcCCc-hhHHHHHhcCc
Q 008585          259 ISLQRLSMSAEM--A---RAIVGHG-----G---VRPLIEICQT----GDSVSQAAAACTLKNISAVP-EVRQMLAEEGI  320 (560)
Q Consensus       259 ~~L~~La~~~~~--~---~~l~~~g-----~---i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~  320 (560)
                      .++..+......  .   .......     .   +..|++.+.+    .++.+....+++|-+|+..+ +.-+.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            666666432111  1   1111122     2   4556665554    36788889999999999754 433444331  


Q ss_pred             HHHHHHHh--hcCCchhHHHHHHHHHHHHccCC------hhHHHHHHhCCCHHHHHHhccC--Cc---------------
Q 008585          321 VSVMIKLL--DCGILLGSKEYAAECLQNLTASN------ENLRRSVVSEGGIRSLLAYLDG--PL---------------  375 (560)
Q Consensus       321 v~~L~~lL--~~~~~~~v~~~a~~~L~~La~~~------~~~~~~i~~~g~l~~L~~ll~~--~~---------------  375 (560)
                      +...+++=  +.....+- ..-+.+++.++.+-      ..+++.+++.|++...+.+|..  |.               
T Consensus       271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~  349 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR  349 (802)
T ss_pred             HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence            12222221  11111011 23367777776622      3678999999999999888843  21               


Q ss_pred             -cHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhc
Q 008585          376 -PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKA  411 (560)
Q Consensus       376 -~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~  411 (560)
                       ....++..|.-|+. ....+.++..+++ ++++.|..
T Consensus       350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq  386 (802)
T PF13764_consen  350 PSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ  386 (802)
T ss_pred             CcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence             23567888888887 3333444556666 66666654

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.24  E-value=0.62  Score=46.98  Aligned_cols=206  Identities=11%  Similarity=0.083  Sum_probs=145.2

Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhh-----HHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHH
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEM-----ARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKN  304 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~-----~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n  304 (560)
                      .+...+.+..|+..|..-+-+.+..++.+..++-.. .+.     ...+.. ..-..+..++.. ++|++-..+-..|+.
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            455668899999999999999999999999888553 222     223332 212223333332 466777788888999


Q ss_pred             hcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHH
Q 008585          305 ISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL  384 (560)
Q Consensus       305 La~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L  384 (560)
                      ...++...+.+.+...+..+++.+..++- ++...|..++..+-..+.......+.                        
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~F-diasdaf~t~~~llt~hk~~~a~fl~------------------------  204 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNF-DIASDAFSTFKELLTRHKKLVAEFLS------------------------  204 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSH-HHHHHHHHHHHHHHHSSHHHHHHHHH------------------------
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCcc-HhHHHHHHHHHHHHhccHHHHHHHHH------------------------
Confidence            99999999999998899999999998886 88888999988877655543221110                        


Q ss_pred             HHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHH----HHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585          385 RNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK----KLVGEAGCTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       385 ~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~----~~i~~~g~i~~Lv~ll~s~~~~v~~~  460 (560)
                            .+-     ..++.....+|.+++.-+++.+...|+.+-.+..+.    +++.+..-+..++.++.+++..+|..
T Consensus       205 ------~n~-----d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~e  273 (335)
T PF08569_consen  205 ------NNY-----DRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFE  273 (335)
T ss_dssp             ------HTH-----HHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHH
T ss_pred             ------HHH-----HHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHH
Confidence                  111     235677888999999999999999999998765543    34444567889999999999999999


Q ss_pred             HHHHHHHhcCCChh
Q 008585          461 AAQAISSLVTLPQN  474 (560)
Q Consensus       461 A~~aL~~L~~~~~~  474 (560)
                      |-.+.--...+|..
T Consensus       274 AFhvFKvFVANp~K  287 (335)
T PF08569_consen  274 AFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHHHHH-SS-
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999888755443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.21  E-value=0.069  Score=50.86  Aligned_cols=143  Identities=19%  Similarity=0.230  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhh
Q 008585          174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLV  246 (560)
Q Consensus       174 A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL  246 (560)
                      |+.-|.-++ .+|+.+..+.++...-.|..+|+..+     ..+|-.++.+++.+...++  .-..+.+.+.+|..++.+
T Consensus        70 aLaLlQ~vA-shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m  148 (262)
T PF04078_consen   70 ALALLQCVA-SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM  148 (262)
T ss_dssp             HHHHHHHHH-H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHH-cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence            343344444 47889999999888878888887654     5678889999999988654  677888999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhhCChhhHHHHHh--------CCChHHHH-HHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585          247 ESGSTVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (560)
Q Consensus       247 ~~~~~~~~~~a~~~L~~La~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (560)
                      +.++.-.+..|..++.++-.++..-..+.+        ..++..++ .+..++++.+.++..++-..|+.++..+..+..
T Consensus       149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999999999999777765444432        12223333 334567889999999999999999988887764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.17  E-value=0.1  Score=56.72  Aligned_cols=228  Identities=14%  Similarity=0.106  Sum_probs=148.4

Q ss_pred             ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH-HhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585          267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK-NISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (560)
Q Consensus       267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~-nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~  345 (560)
                      ...-+...++.|+...|+.++..+.+..+..+..+|. .+.. +..+.    ...++.+.+.+......--.+.++.++.
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            3444556778999999999999989999988888887 2221 11110    1244555555544332223456788888


Q ss_pred             HHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585          346 NLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (560)
Q Consensus       346 ~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (560)
                      ||++.++..|+.+.+                                      ...++.+-.++-..++..|..++..+.
T Consensus       568 nLas~s~s~r~~i~k--------------------------------------e~~~~~ie~~~~ee~~~lqraa~e~~~  609 (748)
T KOG4151|consen  568 NLASISESDRQKILK--------------------------------------EKALGKIEELMTEENPALQRAALESII  609 (748)
T ss_pred             cccCcchhhHHHHHH--------------------------------------HhcchhhHHHhhcccHHHHHHHHHHHH
Confidence            888877766654443                                      223333444556778899999999999


Q ss_pred             HHhCChhH-HHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHH-HhhhCCChHHHHhccCCCCchhhHH
Q 008585          426 RVCTSAEM-KKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCRE-VKRDDKSVPNLVQLLDPSPQNTAKK  502 (560)
Q Consensus       426 ~La~~~~~-~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~-~~~~~~~v~~Lv~lL~~~~~~~~~~  502 (560)
                      ||.-++.. .+.+++ ....+.....+....+.....++.++..++....|+.. ......+...++.++.+.+..... 
T Consensus       610 NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qh-  688 (748)
T KOG4151|consen  610 NLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQH-  688 (748)
T ss_pred             HHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhh-
Confidence            99876543 445555 34567666666666667778888888878776666544 555556678888888887554444 


Q ss_pred             HHHHHHHHhCC-ChhhHHHHHHcChhHHHHHhhccCc
Q 008585          503 YAVACLASLSP-SKKCKKLMISYGAIGYLKKLSEMDI  538 (560)
Q Consensus       503 ~a~~~L~~L~~-~~~~r~~i~~~g~i~~L~~L~~~~~  538 (560)
                      ..+.+..++.. ..+....+.....++.+..+...+.
T Consensus       689 rgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  689 RGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            44444444543 4467777778888887777766644

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.16  E-value=0.16  Score=51.15  Aligned_cols=222  Identities=12%  Similarity=0.101  Sum_probs=161.9

Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh-----HHHHHHh--CCCHHHHHHhccCCccHHHHHHHHH
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-----LRRSVVS--EGGIRSLLAYLDGPLPQESAVGALR  385 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~-----~~~~i~~--~g~l~~L~~ll~~~~~~~~a~~~L~  385 (560)
                      ..+...+.+..++..|..-+- +.+..+..+..++.....+     ..+++..  ...+..|+..-++++.-..+-..|+
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~f-EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDF-ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-H-HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCC-cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence            455567899999999988885 8899999999998874322     2344543  3467777777788999999999999


Q ss_pred             Hhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH-hCChhHHHHHHhcC---CHHHHHHHHccCCHHHHHH
Q 008585          386 NLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV-CTSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       386 nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L-a~~~~~~~~i~~~g---~i~~Lv~ll~s~~~~v~~~  460 (560)
                      .++. +...+.+.....+..+.+.++.++-++...|..++..+ ..+......+...+   +......++.+++--+|..
T Consensus       149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            9998 45567777888899999999999999999999999985 46666655555544   5678888999999999999


Q ss_pred             HHHHHHHhcCCChhhH---HHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh----hhHHHHHH--cChhHHHH
Q 008585          461 AAQAISSLVTLPQNCR---EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK----KCKKLMIS--YGAIGYLK  531 (560)
Q Consensus       461 A~~aL~~L~~~~~~~~---~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~----~~r~~i~~--~g~i~~L~  531 (560)
                      ++..|..|..+..|..   .++.+...+..++.+|.+.. ..++-.|..++-...-+|    ..+..+..  ...+.+|.
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~  307 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLK  307 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHH
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999998888865   55656677788888998863 346777887776555322    34444432  45666777


Q ss_pred             Hhhcc
Q 008585          532 KLSEM  536 (560)
Q Consensus       532 ~L~~~  536 (560)
                      +....
T Consensus       308 ~f~~~  312 (335)
T PF08569_consen  308 DFHTD  312 (335)
T ss_dssp             TTTTT
T ss_pred             hCCCC
Confidence            66533

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.08  E-value=0.15  Score=44.95  Aligned_cols=121  Identities=14%  Similarity=0.155  Sum_probs=97.4

Q ss_pred             HHHHhCCCHHHHHHhhhcCC------HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--ChHHHHHHHHHH
Q 008585          231 NWLVSEGVLPPLIRLVESGS------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTL  302 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL  302 (560)
                      ..+++.||++.|+++++++.      .....++..++..|-.+.-..|.......+..++......  ++.+...++..|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            45778899999999999876      3667788888888887776678888888888888888753  678889999999


Q ss_pred             HHhcCCch-hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585          303 KNISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (560)
Q Consensus       303 ~nLa~~~~-~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~  352 (560)
                      -++..+.. ....+.++=-++.|+..|...+. +++.++...+-.|....+
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~-~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQ-EIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcCC
Confidence            99987654 45666666679999999999776 899999988888876333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.03  E-value=0.09  Score=57.39  Aligned_cols=344  Identities=12%  Similarity=0.112  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH------HHhCCCHHHH
Q 008585          169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW------LVSEGVLPPL  242 (560)
Q Consensus       169 ~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~------l~~~g~i~~L  242 (560)
                      ...-++++-|+.|+.++ +....+++.|||..|+..=.-+.  .-.-.-.+|..++.....-+.      .+-..++..-
T Consensus       368 ~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s~--~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~  444 (1516)
T KOG1832|consen  368 PLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVSE--TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLA  444 (1516)
T ss_pred             cccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCchh--hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHH
Confidence            33456777777777643 45667788899888776533221  111122345555544432221      1222345555


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--------C---h--------HHHHHHHHHHH
Q 008585          243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--------D---S--------VSQAAAACTLK  303 (560)
Q Consensus       243 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--------~---~--------~~~~~a~~aL~  303 (560)
                      +.+|.......+..++.....--.-...-..|-...+++.|+.++++-        +   +        ..-...|.+|+
T Consensus       445 ~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR  524 (1516)
T KOG1832|consen  445 IELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALR  524 (1516)
T ss_pred             HHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHH
Confidence            666766544444444333222111122334455577788888887631        1   1        12245566666


Q ss_pred             Hhc------CCchhHHHHHhcCcHHHHHHHhhcCCc-h----hHHHHHHHHHHHHccCCh-------hHHHHHHhCCCHH
Q 008585          304 NIS------AVPEVRQMLAEEGIVSVMIKLLDCGIL-L----GSKEYAAECLQNLTASNE-------NLRRSVVSEGGIR  365 (560)
Q Consensus       304 nLa------~~~~~~~~i~e~g~v~~L~~lL~~~~~-~----~v~~~a~~~L~~La~~~~-------~~~~~i~~~g~l~  365 (560)
                      .--      ..+.+++.-...+.++..++-+..+.. .    ...+..++-+..+....+       .-.+.+.+.+++.
T Consensus       525 ~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~  604 (1516)
T KOG1832|consen  525 QYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVV  604 (1516)
T ss_pred             HHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHH
Confidence            432      133334444445555555553332211 1    222333333333222111       1134456678888


Q ss_pred             HHHHhccC----------CccHHHHHHHHHHhhc-cccHHHHHhC--------CcHHHHHHHHhc----CCHHHHHHHHH
Q 008585          366 SLLAYLDG----------PLPQESAVGALRNLVG-SVSQEVLISL--------GFFPRLVHVLKA----GSLGAQQAAAS  422 (560)
Q Consensus       366 ~L~~ll~~----------~~~~~~a~~~L~nla~-~~~~~~l~~~--------~~i~~Lv~lL~~----~~~~v~~~A~~  422 (560)
                      .++++..-          .+....|+++|..+.. +..+.++...        .++..++..-..    .++++++.|+.
T Consensus       605 ~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~  684 (1516)
T KOG1832|consen  605 TMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALN  684 (1516)
T ss_pred             HHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHh
Confidence            88888643          1234455555555554 5555554221        134444433321    36999999999


Q ss_pred             HHHHHhCC-hhHHHHHHhc-C---CHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC--
Q 008585          423 ALCRVCTS-AEMKKLVGEA-G---CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS--  495 (560)
Q Consensus       423 aL~~La~~-~~~~~~i~~~-g---~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--  495 (560)
                      +|-|+.+. |+++...+.. |   +-+...---.++.. .   --..|..+       ...++..+++..|+.||+-.  
T Consensus       685 vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~-~---le~~l~~m-------w~~Vr~ndGIkiLl~Ll~~k~P  753 (1516)
T KOG1832|consen  685 VIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSA-K---LEQVLRQM-------WEAVRGNDGIKILLKLLQYKNP  753 (1516)
T ss_pred             hhheeecCCCCcchhhhhhccccCCCccccccCCCchH-H---HHHHHHHH-------HHHHhcCccHHHHHHHHhccCC
Confidence            99999877 4776655322 1   11110000011111 1   11222222       44556678889999998765  


Q ss_pred             --CchhhHHHHHHHHHHhCCChhhHHHHHHcCh
Q 008585          496 --PQNTAKKYAVACLASLSPSKKCKKLMISYGA  526 (560)
Q Consensus       496 --~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~  526 (560)
                        +.+.++..|+.+|.-|++++..|..+.+--.
T Consensus       754 ~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpL  786 (1516)
T KOG1832|consen  754 PTTADCIRALACRVLLGLARDDTVRQILTKLPL  786 (1516)
T ss_pred             CCcHHHHHHHHHHHHhccccCcHHHHHHHhCcc
Confidence              2345888999999999999999988766433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.01  E-value=0.1  Score=45.95  Aligned_cols=119  Identities=15%  Similarity=0.148  Sum_probs=92.8

Q ss_pred             HHHHHhCCChHHHHHHhccCC------hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCC-chhHHHHHHHH
Q 008585          271 ARAIVGHGGVRPLIEICQTGD------SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI-LLGSKEYAAEC  343 (560)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~~~------~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~-~~~v~~~a~~~  343 (560)
                      +.+|...||+..|++++.+++      .+....++.++.+|-.+.-+.-...+...|..++.++.... +..+...|+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            567889999999999998865      36778888899888876554555666667888888887544 34789999999


Q ss_pred             HHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585          344 LQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (560)
Q Consensus       344 L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~  389 (560)
                      |.++..+++.....+.+.=-++.|+..++.  +.++.+++..|-.|-.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999888877777777778888888865  4567777777777765

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.00  E-value=0.27  Score=49.16  Aligned_cols=185  Identities=20%  Similarity=0.218  Sum_probs=111.8

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC--ChhHHH
Q 008585          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS--NENLRR  356 (560)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~--~~~~~~  356 (560)
                      ...+..+.+.....|..++..+.++....-....+.+  ...+..+.+.++.+.. +-+..|+.++.-++-.  ......
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence            3445555667788889999988888643222233322  3367778888888876 5566677777666553  122233


Q ss_pred             HHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc--cccHHHHH-hCCcHHHH--HHHHhc----------CCHHHH
Q 008585          357 SVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLI-SLGFFPRL--VHVLKA----------GSLGAQ  417 (560)
Q Consensus       357 ~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~--~~~~~~l~-~~~~i~~L--v~lL~~----------~~~~v~  417 (560)
                      .+++ ...+.|.+.+.+    +..+..++.+|+-+++  ......+. -...+..+  ....+.          +++.+.
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            4443 245677777754    3456677777777776  22222111 01223311  122221          125677


Q ss_pred             HHHHHHHHHHhCC-hh--HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          418 QAAASALCRVCTS-AE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       418 ~~A~~aL~~La~~-~~--~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ..|+.+-+-|... +.  ....+  ...++.|+.+|.+.+.+||..|-++|+-|.
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7887777777644 32  33222  345999999999999999999999999885

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.00  E-value=3.1  Score=45.36  Aligned_cols=318  Identities=16%  Similarity=0.135  Sum_probs=187.8

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      ...++...++|...++-+|+.|.-++..+-+..+    .++ .++-+.+-+.| ...++..+..|...|....  ++.  
T Consensus       133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D--~Er--  203 (948)
T KOG1058|consen  133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTD--PER--  203 (948)
T ss_pred             hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcC--HHH--
Confidence            4457777788888888999999888877765422    111 13344444444 4456788888776554432  221  


Q ss_pred             HHHhCCCHHHHHHhh---hcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          232 WLVSEGVLPPLIRLV---ESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                            ++..+....   .+-++..+......+...+.. +.-+..+     ++.+..+|.+.++.++..|+.+|.+|+.
T Consensus       204 ------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~  272 (948)
T KOG1058|consen  204 ------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSN  272 (948)
T ss_pred             ------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccC
Confidence                  122222222   222456666667777777663 3333333     4889999999999999999999999998


Q ss_pred             CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC--ccHHHHHHHHH
Q 008585          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALR  385 (560)
Q Consensus       308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~~~a~~~L~  385 (560)
                      +|..-+.     +..+++.++.+..+-.++-..+.-|..+...++..-     .|.+--++++|++|  +++..++....
T Consensus       273 ~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il-----~~l~mDvLrvLss~dldvr~Ktldi~l  342 (948)
T KOG1058|consen  273 DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIAL  342 (948)
T ss_pred             CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH-----HHHHHHHHHHcCcccccHHHHHHHHHH
Confidence            7755443     345666766554433566666666666664433322     23355567777765  56888888877


Q ss_pred             HhhccccHHHHHhCCcHHHHHH-HHhc------CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585          386 NLVGSVSQEVLISLGFFPRLVH-VLKA------GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (560)
Q Consensus       386 nla~~~~~~~l~~~~~i~~Lv~-lL~~------~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v  457 (560)
                      -|....+.+.+     +..|-. +.+.      .+..-++.-..+++.++.. ++....+     ++.|++++.+.++..
T Consensus       343 dLvssrNvedi-----v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD~N~~a  412 (948)
T KOG1058|consen  343 DLVSSRNVEDI-----VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISDSNEAA  412 (948)
T ss_pred             hhhhhccHHHH-----HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCCHHH
Confidence            77764333222     111111 1111      2345678888899988854 7776555     899999999888765


Q ss_pred             HHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585          458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       458 ~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                      ....+..+......-++.+..+     +..|+.-+..--....-..+++++..-|...
T Consensus       413 as~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~  465 (948)
T KOG1058|consen  413 ASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGL  465 (948)
T ss_pred             HHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence            5555555555544444433322     2444433322111134556677776655433

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.98  E-value=3.2  Score=47.11  Aligned_cols=305  Identities=16%  Similarity=0.135  Sum_probs=168.9

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      .+.+..|+..|...+..++..|++.+..+....|..   +++ ..+...++++...+ +..-..|+-+|..|+...=...
T Consensus       340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            466777888888999999999999999999988833   222 34555566554433 5556688889999987642111


Q ss_pred             HHHhCCCHHHHHHhhhcC--------CHHHHHHHHHHHHHhhCChhhH--HHHHhCCChHH-HHHHhccCChHHHHHHHH
Q 008585          232 WLVSEGVLPPLIRLVESG--------STVGKEKATISLQRLSMSAEMA--RAIVGHGGVRP-LIEICQTGDSVSQAAAAC  300 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~~~~--~~l~~~g~i~~-Lv~ll~~~~~~~~~~a~~  300 (560)
                      ... ..++|.+++.|.-+        ...+|..|+.+++.++...+..  ..+.+ ...+. |+..+=+.+-..|+.|..
T Consensus       416 s~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence            111 13566666666432        4458888888888887643222  21211 11111 222233455567777777


Q ss_pred             HHHHhcCC--------------------------chhHHHHHh-cCcHHHHHHHhhcC-----CchhHHHHHHHHHHHHc
Q 008585          301 TLKNISAV--------------------------PEVRQMLAE-EGIVSVMIKLLDCG-----ILLGSKEYAAECLQNLT  348 (560)
Q Consensus       301 aL~nLa~~--------------------------~~~~~~i~e-~g~v~~L~~lL~~~-----~~~~v~~~a~~~L~~La  348 (560)
                      |+-.....                          ...+..+.+ +|....+++-+-..     +. .+++.++.+|.+|+
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~-~irelaa~aL~~Ls  572 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV-KIRELAAYALHKLS  572 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH-HHHHHHHHHHHHHH
Confidence            77654321                          112333444 45555555443322     33 78999999999988


Q ss_pred             cCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc----cc-cHHHHHh---CC---cHHHHHH-HHhcCC-
Q 008585          349 ASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG----SV-SQEVLIS---LG---FFPRLVH-VLKAGS-  413 (560)
Q Consensus       349 ~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~----~~-~~~~l~~---~~---~i~~Lv~-lL~~~~-  413 (560)
                      ...+.    ....+.+++++....+  ...+..+.-+.+.+..    -. ....+.+   .+   .++++.. ....+. 
T Consensus       573 ~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~  648 (1133)
T KOG1943|consen  573 LTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG  648 (1133)
T ss_pred             HhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH
Confidence            65442    3445677888777655  3334433333333322    01 0000000   11   2333332 222221 


Q ss_pred             HHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          414 LGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       414 ~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      .-.+...+..+.++.-+ ......+.-.+.-..+.+.+...+ .+|..|..++..++
T Consensus       649 ~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~  704 (1133)
T KOG1943|consen  649 TLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLV  704 (1133)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHH
Confidence            34455566667776644 344444444454555555553343 78888888888887

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.97  E-value=0.031  Score=45.26  Aligned_cols=90  Identities=14%  Similarity=0.070  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChH
Q 008585          214 EKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV  293 (560)
Q Consensus       214 ~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~  293 (560)
                      ..++.+|...+..-...-.-.-...+++++..+.+.+..+|.+|+.+|.+++..........=...+..|.+++.+.++.
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~   83 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN   83 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence            34555555554432211111122379999999999999999999999999976432211111245668888888888888


Q ss_pred             HHHHHHHHHHH
Q 008585          294 SQAAAACTLKN  304 (560)
Q Consensus       294 ~~~~a~~aL~n  304 (560)
                      +|..| ..|-+
T Consensus        84 Vr~~a-~~Ld~   93 (97)
T PF12755_consen   84 VRSAA-ELLDR   93 (97)
T ss_pred             HHHHH-HHHHH
Confidence            87665 44433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=95.83  E-value=0.47  Score=53.97  Aligned_cols=294  Identities=14%  Similarity=0.102  Sum_probs=145.6

Q ss_pred             HHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-C---hhhHH
Q 008585          198 IAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-S---AEMAR  272 (560)
Q Consensus       198 v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~---~~~~~  272 (560)
                      ++.+...+++= ....+..|+..|..++..-.....+  ..++|.++.++.+....+|..|..+|..+-. .   +..-.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da  501 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA  501 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence            45555555442 3678889999999998765422222  2379999999999999999999999888732 1   11222


Q ss_pred             HHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC
Q 008585          273 AIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN  351 (560)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~  351 (560)
                      .+.-.=.+|.|-.++.+ ....+|..-+..|..||..   .-.|.+.+--.....++++.+. +       ...+. ..+
T Consensus       502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~ns-e-------t~~~~-~~~  569 (1431)
T KOG1240|consen  502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNS-E-------TAPEQ-NYN  569 (1431)
T ss_pred             hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCccc-c-------ccccc-ccc
Confidence            23333445667777766 3344555555556555531   1112111111111111222221 1       00000 001


Q ss_pred             hhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585          352 ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (560)
Q Consensus       352 ~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~  429 (560)
                      .+ .+.+ ..++-+....++.+  +-++..-+..|.-||..-.++. ...-.++.|+.+|+..|..++..-...|.-++.
T Consensus       570 ~~-~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi  646 (1431)
T KOG1240|consen  570 TE-LQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSI  646 (1431)
T ss_pred             hH-HHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc-cccchHHHHHHHhcCccHHHHHHHHhhccceEE
Confidence            11 1111 11112223334433  2344444555666654101100 012347777888877777766655554444332


Q ss_pred             ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHH
Q 008585          430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (560)
Q Consensus       430 ~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~  509 (560)
                      .-.-+  -.+++.+|.|.+-+.+..+-|...|+++|..|+...--++..+.  +.+.....+|-. |..-++..++.++.
T Consensus       647 ~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~h-PN~WIR~~~~~iI~  721 (1431)
T KOG1240|consen  647 FVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCH-PNLWIRRAVLGIIA  721 (1431)
T ss_pred             EEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeC-chHHHHHHHHHHHH
Confidence            21100  01234577777777777777777788877777632222222221  111222222222 22356777777666


Q ss_pred             HhCC
Q 008585          510 SLSP  513 (560)
Q Consensus       510 ~L~~  513 (560)
                      ....
T Consensus       722 ~~~~  725 (1431)
T KOG1240|consen  722 AIAR  725 (1431)
T ss_pred             HHHh
Confidence            5543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.82  E-value=3  Score=43.75  Aligned_cols=337  Identities=15%  Similarity=0.102  Sum_probs=187.9

Q ss_pred             HHHHHHHccCCH---HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc----
Q 008585          157 RELLARLQIGHL---EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS----  228 (560)
Q Consensus       157 ~~Ll~~L~~~~~---~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~----  228 (560)
                      +.+++.|...+.   ......+..|..++...+-....+.  ..+..+-..++.. +.+.....+..|..+.....    
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            345555544443   4566788888888864442221111  3344444444332 35555666666666654332    


Q ss_pred             --hHHHHHhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhc---------
Q 008585          229 --CENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQ---------  288 (560)
Q Consensus       229 --~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~---------  288 (560)
                        ......+..+++.+.++.-..       +..+...+..++..+..  +.+.+..++     ..+..+.-         
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCC
Confidence              233444555777777765332       24555556666666544  344444443     33333332         


Q ss_pred             -cC------ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC--hhHHHHHH
Q 008585          289 -TG------DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN--ENLRRSVV  359 (560)
Q Consensus       289 -~~------~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~--~~~~~~i~  359 (560)
                       ..      ..........++..+-.+-... ..  ...+..++.+..+.++...+..++.+++.+...-  +..-+   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence             01      1122233344454443321111 11  1267777777665554478899999999888742  22111   


Q ss_pred             hCCCHHHHHHhcc---CCccHHHHHHHHHHhhc----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-h
Q 008585          360 SEGGIRSLLAYLD---GPLPQESAVGALRNLVG----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A  431 (560)
Q Consensus       360 ~~g~l~~L~~ll~---~~~~~~~a~~~L~nla~----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~  431 (560)
                        ..+..+...+.   .+..+..++.++.-++.    ...+.   ...++..|+.++.+  +++...++.++.-+..+ +
T Consensus       229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~---~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~  301 (415)
T PF12460_consen  229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL---ATELLDKLLELLSS--PELGQQAAKAFGILLSDSD  301 (415)
T ss_pred             --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch---HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH
Confidence              12333333331   13445555555544443    11111   12357777787766  77788899999988766 3


Q ss_pred             hH-------------HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCch
Q 008585          432 EM-------------KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQN  498 (560)
Q Consensus       432 ~~-------------~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~  498 (560)
                      +.             ++.+.. ..+|.|++..+..+.+.+.....||.++..+-+..--.-.-...++.+++-|+..+. 
T Consensus       302 ~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~-  379 (415)
T PF12460_consen  302 DVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA-  379 (415)
T ss_pred             HhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH-
Confidence            32             333322 358889888888777789999999999997765432222223556778888876543 


Q ss_pred             hhHHHHHHHHHHhCCCh
Q 008585          499 TAKKYAVACLASLSPSK  515 (560)
Q Consensus       499 ~~~~~a~~~L~~L~~~~  515 (560)
                      .++..++.++..+..+.
T Consensus       380 ~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  380 DVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            57888888888776544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.73  E-value=1.6  Score=43.75  Aligned_cols=193  Identities=17%  Similarity=0.194  Sum_probs=118.6

Q ss_pred             hhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh--hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-
Q 008585          150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLLTATSPRIREKTVTVICSLAES-  226 (560)
Q Consensus       150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-  226 (560)
                      +.....+...+..+.......|..++..+..++....-. ..+.  ....+..+.+.++.+..+-+..|+.++..++-. 
T Consensus        39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl  117 (309)
T PF05004_consen   39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL  117 (309)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence            333444677788888788899999999999998654322 1121  123477788888888776677788888888665 


Q ss_pred             --CchHHHHHhCCCHHHHHHhhhcCC--HHHHHHHHHHHHHhhC----ChhhHHHHHhCCChHHHHH--Hhc--------
Q 008585          227 --GSCENWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSM----SAEMARAIVGHGGVRPLIE--ICQ--------  288 (560)
Q Consensus       227 --~~~~~~l~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~La~----~~~~~~~l~~~g~i~~Lv~--ll~--------  288 (560)
                        .+....+++ ...|.|.+++.+++  ...|..++.+|.-++.    +++......  ..+..+..  ..+        
T Consensus       118 g~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~  194 (309)
T PF05004_consen  118 GAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVV  194 (309)
T ss_pred             CCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccc
Confidence              123334443 36788888888764  4556666666666533    222222111  01111111  111        


Q ss_pred             --cCChHHHHHHHHHHHHhcC-Cchh-HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585          289 --TGDSVSQAAAACTLKNISA-VPEV-RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (560)
Q Consensus       289 --~~~~~~~~~a~~aL~nLa~-~~~~-~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La  348 (560)
                        .+++.+...|+.+..-|.. .+.. ..... ...++.|..+|.+++. +||..|.++|.-|.
T Consensus       195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~-~VRiAAGEaiAll~  256 (309)
T PF05004_consen  195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDV-DVRIAAGEAIALLY  256 (309)
T ss_pred             cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH
Confidence              1235677777777666653 3331 12222 3478999999999886 89999988887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.72  E-value=1.2  Score=40.66  Aligned_cols=93  Identities=12%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh
Q 008585          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV  246 (560)
Q Consensus       167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL  246 (560)
                      ++.+|..++..+..++..-+.    +++ ..++.+...|+++++.+|..|+.+|..|...+-.+-   +...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence            467888999999999976662    222 468899999999999999999999999987653211   111347888899


Q ss_pred             hcCCHHHHHHHHHHHHHhhCC
Q 008585          247 ESGSTVGKEKATISLQRLSMS  267 (560)
Q Consensus       247 ~~~~~~~~~~a~~~L~~La~~  267 (560)
                      .++++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999775

>PRK14707 hypothetical protein; Provisional

Probab=95.70  E-value=5.7  Score=48.41  Aligned_cols=368  Identities=15%  Similarity=0.145  Sum_probs=199.7

Q ss_pred             cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHH
Q 008585          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-AT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPL  242 (560)
Q Consensus       165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L  242 (560)
                      ..+.....+|+.-+...+...++.+..+ ..-.+..+++-.+ .+ +.+.+..+......++.++..+..+ ...+|..+
T Consensus       133 ~~~~~~c~~a~a~i~~~~~~~~~~~~~l-~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~  210 (2710)
T PRK14707        133 NLDSGRCERAVARLARHLRREDKARQTL-NAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATV  210 (2710)
T ss_pred             CCCchHHHHHHHHHHHHhccccchhhhh-ccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHH
Confidence            3344455566655555554334332222 1223666666554 33 4777777777777777776655555 33356666


Q ss_pred             HHhhhc--CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHHhcCCchhHHHHHhcC
Q 008585          243 IRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPEVRQMLAEEG  319 (560)
Q Consensus       243 v~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~~~~~i~e~g  319 (560)
                      ++.+..  +++..+..+...-..++.+..-+..+-..|+-..|-.+++-++. .....+..+=..++.++..++.+...+
T Consensus       211 lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~  290 (2710)
T PRK14707        211 LNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN  290 (2710)
T ss_pred             HHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH
Confidence            666654  45666665555555566655444444334444444444554444 444444444445666667777766544


Q ss_pred             cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhcc-ccHH
Q 008585          320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGS-VSQE  394 (560)
Q Consensus       320 ~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~-~~~~  394 (560)
                      .-..+-.+-+-++. .+...+...|..=-.+++..++. .+.-++...+..|..    ...+..+......++.+ ...+
T Consensus       291 vanalNalSKwpd~-~vc~~Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~  368 (2710)
T PRK14707        291 VTQALNALSKWADL-PVCAEAAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK  368 (2710)
T ss_pred             HHHHHhhhhcCCCc-hHHHHHHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc
Confidence            44444444444554 56555555554444445665532 233345556666654    33455666666666653 2332


Q ss_pred             HHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHH-HHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585          395 VLISLGFFPRLVHVLKA-GSLGAQQAAASALC-RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (560)
Q Consensus       395 ~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~-~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~  472 (560)
                      .+ +...+...++.|.. ++..+-..|+.+|. .+..+++.++.|--.|+-..|-.+-+=++..+...++.+|..-..++
T Consensus       369 ~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d  447 (2710)
T PRK14707        369 DL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD  447 (2710)
T ss_pred             cc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc
Confidence            22 34446666666654 44445455555554 67788999999977775555555545455556666666665554444


Q ss_pred             hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHH-HHhCCChhhHHHHHHcChhHHHHHhhccCc
Q 008585          473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL-ASLSPSKKCKKLMISYGAIGYLKKLSEMDI  538 (560)
Q Consensus       473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L-~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~  538 (560)
                      ....+-+. ...|...+..+..=|++..-..+...| ..|+...+.++.|--.+....|-.|.+-.+
T Consensus       448 ~~l~~~~~-p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd  513 (2710)
T PRK14707        448 TELCKALD-PINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPD  513 (2710)
T ss_pred             HHHHhhcC-hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCC
Confidence            44333232 223444555554434444333444444 477777777777776676667766665555

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.70  E-value=0.042  Score=44.55  Aligned_cols=67  Identities=25%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNL  347 (560)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L  347 (560)
                      ...+++++..+.++++.+|..|+.+|.|++..-  +..+..  ..++..+.+++.+.++ .|+..| ..|-++
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~-~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDE-NVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCch-hHHHHH-HHHHHH
Confidence            345689999999999999999999999998632  223322  4578888888888886 666554 555444

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.57  E-value=2.7  Score=46.71  Aligned_cols=216  Identities=15%  Similarity=0.101  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh
Q 008585          209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC  287 (560)
Q Consensus       209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll  287 (560)
                      .|...-.+..++...+.....-..+... .+...++.+. +..+.++..|+++++.-+.....  .-...++++.|+.+.
T Consensus       463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl--~~~~p~ild~L~qla  539 (1005)
T KOG2274|consen  463 SPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL--LSLQPMILDGLLQLA  539 (1005)
T ss_pred             CHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCceec--cccchHHHHHHHHHc
Confidence            3666667777777665542211111111 1222333333 34556777777777766521111  111356677788888


Q ss_pred             ccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585          288 QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (560)
Q Consensus       288 ~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (560)
                      ...+.++......+|+.++..+.-.....++.+.|.++.++- ..+++.+...+-.++..++.. ..+.. -..+-.+|.
T Consensus       540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g-~m~e~~iPs  617 (1005)
T KOG2274|consen  540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYG-PMQERLIPS  617 (1005)
T ss_pred             ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhc-chHHHHHHH
Confidence            778888999999999999875443444445667777777754 333335666666666666541 11111 112234889


Q ss_pred             HHHhccC------CccHHHHHHHHHHhhc---cccHHHHHhCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHhCC
Q 008585          367 LLAYLDG------PLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHV-LKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       367 L~~ll~~------~~~~~~a~~~L~nla~---~~~~~~l~~~~~i~~Lv~l-L~~~~~~v~~~A~~aL~~La~~  430 (560)
                      ++..++.      +.....++.+|..+.+   ++-.+.+...- .+++.+. +.+++.++.+.+..+|..+...
T Consensus       618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~-FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA-FPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH-hHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            9999864      3456788888888887   34444444443 4445443 4567889999999999988754

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.52  E-value=0.048  Score=45.55  Aligned_cols=73  Identities=11%  Similarity=0.127  Sum_probs=60.2

Q ss_pred             hhchHHHHHHHH-ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008585          152 THGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA  224 (560)
Q Consensus       152 ~~~~i~~Ll~~L-~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La  224 (560)
                      ....++.|+..| .+.++....-|+.-|.+++...|..+..+-+.|+-..+++++.+++++++.+|+.++..+-
T Consensus        41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            455688899999 4556777888999999999999987777767788999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.47  E-value=0.42  Score=47.68  Aligned_cols=158  Identities=15%  Similarity=0.178  Sum_probs=106.5

Q ss_pred             CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHH-------HHhcCCH
Q 008585          374 PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKL-------VGEAGCT  443 (560)
Q Consensus       374 ~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~-------i~~~g~i  443 (560)
                      +.+|+.++.+|+-+|. ....    ....++.+...++.++..++..|+.++..+..  +.+.-..       ......+
T Consensus        41 ~~vR~~al~cLGl~~Lld~~~----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~  116 (298)
T PF12719_consen   41 PAVRELALKCLGLCCLLDKEL----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLL  116 (298)
T ss_pred             HHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHH
Confidence            5789999999999997 3211    12347778888877899999999999999873  2222111       1224567


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHH-hccCCCCc--hhhHHHHHHHHHHhCCChhhHHH
Q 008585          444 PLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV-QLLDPSPQ--NTAKKYAVACLASLSPSKKCKKL  520 (560)
Q Consensus       444 ~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv-~lL~~~~~--~~~~~~a~~~L~~L~~~~~~r~~  520 (560)
                      +.+.+.+.+.+++++..|++.++.|.....-..    ....+..|+ ...++...  ...++.-...+-..+.+...++.
T Consensus       117 ~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~  192 (298)
T PF12719_consen  117 KILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQE  192 (298)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence            888888888999999999999999985433322    012233333 44454422  23554444445577776666667


Q ss_pred             HHHcChhHHHHHhhccCch
Q 008585          521 MISYGAIGYLKKLSEMDIP  539 (560)
Q Consensus       521 i~~~g~i~~L~~L~~~~~~  539 (560)
                      .....+++.+..+.+...+
T Consensus       193 ~l~~~f~~~l~~~~~~~~~  211 (298)
T PF12719_consen  193 RLAEAFLPTLRTLSNAPDE  211 (298)
T ss_pred             HHHHHHHHHHHHHHhCccc
Confidence            7788999999999887664

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.43  E-value=0.12  Score=47.70  Aligned_cols=123  Identities=15%  Similarity=0.126  Sum_probs=84.6

Q ss_pred             cCCHHHHHHHHHHHHHhhCChhhHHHHHhC----------------CChHHHHHHhcc------CChHHHHHHHHHHHHh
Q 008585          248 SGSTVGKEKATISLQRLSMSAEMARAIVGH----------------GGVRPLIEICQT------GDSVSQAAAACTLKNI  305 (560)
Q Consensus       248 ~~~~~~~~~a~~~L~~La~~~~~~~~l~~~----------------g~i~~Lv~ll~~------~~~~~~~~a~~aL~nL  305 (560)
                      +.+......++..|.||+..++.+..+.+.                ..+..|+..+..      ....--.+.+.+|.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            334446677888999999887777655542                245667766644      2234457889999999


Q ss_pred             cCCchhHHHHHhc--Cc--HHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhC---CCHHHHHHhcc
Q 008585          306 SAVPEVRQMLAEE--GI--VSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE---GGIRSLLAYLD  372 (560)
Q Consensus       306 a~~~~~~~~i~e~--g~--v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~---g~l~~L~~ll~  372 (560)
                      +..++.|+.+.+.  +.  +..|+.++++.+. .-|.-++.+|.|+|.+.+.. ..+...   +.++.|+.-+.
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~-iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV-IRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            9999999999983  34  6777777777754 56777899999999976553 444442   34555444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=1.7  Score=47.08  Aligned_cols=159  Identities=19%  Similarity=0.120  Sum_probs=92.2

Q ss_pred             CcHHHHHHHhhcCCchhHHHHHHHHHHHHcc-CChhHHHHHHhCCCHHHHHHh-ccC--CccHHHHHHHHHHhhccccHH
Q 008585          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGSVSQE  394 (560)
Q Consensus       319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~~g~l~~L~~l-l~~--~~~~~~a~~~L~nla~~~~~~  394 (560)
                      ++=+.+-+++.+.++ -+|....-.+. ++. +..+       .+++..|+.+ +.+  .+++..|+-+|+-++..+   
T Consensus       519 ~Ad~lI~el~~dkdp-ilR~~Gm~t~a-lAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d---  586 (929)
T KOG2062|consen  519 DADPLIKELLRDKDP-ILRYGGMYTLA-LAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD---  586 (929)
T ss_pred             hhHHHHHHHhcCCch-hhhhhhHHHHH-HHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecC---
Confidence            333444445555554 45555444333 222 1111       2346777777 333  679999999999888721   


Q ss_pred             HHHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCC
Q 008585          395 VLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TLP  472 (560)
Q Consensus       395 ~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~-~~~  472 (560)
                          ....+..+.+|. +.++.|+--++.+|+-.|.....+.++      ..|-.+...+..-||..|+.+++.+. .+.
T Consensus       587 ----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  587 ----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             ----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence                113556666665 468999999999999988765555443      33333444555558999999998887 222


Q ss_pred             hhhHHHhhhCCChHHHHhccCCCCchhhH
Q 008585          473 QNCREVKRDDKSVPNLVQLLDPSPQNTAK  501 (560)
Q Consensus       473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~  501 (560)
                      +....-+.  +....+.+.+.+..++...
T Consensus       657 ~~~~pkv~--~frk~l~kvI~dKhEd~~a  683 (929)
T KOG2062|consen  657 EQLCPKVN--GFRKQLEKVINDKHEDGMA  683 (929)
T ss_pred             cccCchHH--HHHHHHHHHhhhhhhHHHH
Confidence            22111111  2235566666666444433

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.24  E-value=0.028  Score=46.94  Aligned_cols=71  Identities=14%  Similarity=0.271  Sum_probs=60.6

Q ss_pred             CcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585          400 GFFPRLVHVLK-AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (560)
Q Consensus       400 ~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~  470 (560)
                      .++..|+++|. +.++.+...|+.=|+.+++. |+.+..+-+.|+-..+++++.+++++||..|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            35888999994 46788888999999999965 8889888888999999999999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.23  E-value=0.93  Score=43.54  Aligned_cols=97  Identities=19%  Similarity=0.076  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhh
Q 008585          253 GKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLD  329 (560)
Q Consensus       253 ~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~  329 (560)
                      ....|..+|.-++. +++.+..+.++.++..++.++. ...+.++..++.+|..+- .++.|.+.|-+.+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            34456778888766 6888889999999999999994 467899999999888775 68899999999999999999998


Q ss_pred             cCC-chhHHHHHHHHHHHHcc
Q 008585          330 CGI-LLGSKEYAAECLQNLTA  349 (560)
Q Consensus       330 ~~~-~~~v~~~a~~~L~~La~  349 (560)
                      +.. +.+++..+++.|.-...
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHc
Confidence            643 24678888887776554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.22  E-value=1.3  Score=49.06  Aligned_cols=241  Identities=15%  Similarity=0.155  Sum_probs=145.7

Q ss_pred             CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHH
Q 008585          249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL  327 (560)
Q Consensus       249 ~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~l  327 (560)
                      ..+.....+.+++...+........+..+ .+...+..+ .+..+-++..|+++++..+... ....+ -.+++..++++
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~~-~p~ild~L~ql  538 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLSL-QPMILDGLLQL  538 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCce-ecccc-chHHHHHHHHH
Confidence            36666668888888775542111111111 012222222 3566778888999888887422 11111 14577788888


Q ss_pred             hhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc----cCCccHHHHHHHHHHhhc-cccHHHHHhCCcH
Q 008585          328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAVGALRNLVG-SVSQEVLISLGFF  402 (560)
Q Consensus       328 L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll----~~~~~~~~a~~~L~nla~-~~~~~~l~~~~~i  402 (560)
                      ....++ ++.....++|+..+..+++.. ...++...+....++    ++|.+...+-.++..++. ..+.. -.....+
T Consensus       539 as~~s~-evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g-~m~e~~i  615 (1005)
T KOG2274|consen  539 ASKSSD-EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG-PMQERLI  615 (1005)
T ss_pred             cccccH-HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc-chHHHHH
Confidence            877665 788888999999999877642 233445555555554    336555666666666665 11111 1234579


Q ss_pred             HHHHHHHhcCC----HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCChhh
Q 008585          403 PRLVHVLKAGS----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLL-EAKPNSVREVAAQAISSLVTLPQNC  475 (560)
Q Consensus       403 ~~Lv~lL~~~~----~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll-~s~~~~v~~~A~~aL~~L~~~~~~~  475 (560)
                      |.++..|...+    +...-.++..|..+.++  +...+.+... +.|++.+.. ++++.++-..+-++|..+.......
T Consensus       616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq  694 (1005)
T KOG2274|consen  616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQ  694 (1005)
T ss_pred             HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence            99999998765    77788888888877765  3444444332 466666655 5677777788999999988654443


Q ss_pred             HHHhhhCCChH------HHHhccCCCC
Q 008585          476 REVKRDDKSVP------NLVQLLDPSP  496 (560)
Q Consensus       476 ~~~~~~~~~v~------~Lv~lL~~~~  496 (560)
                      -....++.+..      .+-+||++..
T Consensus       695 ~~t~~~e~g~~~~yImqV~sqLLdp~~  721 (1005)
T KOG2274|consen  695 LLTWHDEPGHNLWYIMQVLSQLLDPET  721 (1005)
T ss_pred             HHhhccCCCccHHHHHHHHHHHcCCcc
Confidence            33333333333      3447777763

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.13  E-value=2.2  Score=47.93  Aligned_cols=177  Identities=16%  Similarity=0.149  Sum_probs=108.0

Q ss_pred             HHhCCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh----cCC---chhHHHHHH
Q 008585          274 IVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD----CGI---LLGSKEYAA  341 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~----~~~---~~~v~~~a~  341 (560)
                      +.+.||+..++.++.+     .+.......+..|...+..+.||+.+.+.|+++.|++.+.    .+.   ...+-+..+
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            4468999999999875     2334556677788888889999999999999999999885    222   125666667


Q ss_pred             HHHHHHccCChh--HHH--HHHhCC-----C---HHHHHHhccC------CccHHHHHHHHHHhhc-cccHHHHHhCCcH
Q 008585          342 ECLQNLTASNEN--LRR--SVVSEG-----G---IRSLLAYLDG------PLPQESAVGALRNLVG-SVSQEVLISLGFF  402 (560)
Q Consensus       342 ~~L~~La~~~~~--~~~--~i~~~g-----~---l~~L~~ll~~------~~~~~~a~~~L~nla~-~~~~~~l~~~~~i  402 (560)
                      .++..+......  ...  ......     .   +..+++.+.+      +.+....+++|-+|+. .......+    +
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L----v  268 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL----V  268 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH----H
Confidence            666666542111  000  001111     2   5556666654      3456788888888887 33332221    2


Q ss_pred             HHHHHHHh--c----CCHHHHHHHHHHHHHHhCC-------hhHHHHHHhcCCHHHHHHHHccCCH
Q 008585          403 PRLVHVLK--A----GSLGAQQAAASALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAKPN  455 (560)
Q Consensus       403 ~~Lv~lL~--~----~~~~v~~~A~~aL~~La~~-------~~~~~~i~~~g~i~~Lv~ll~s~~~  455 (560)
                      ..+-..++  .    ..++- +..+..++.++..       ...+..+++.|++...++.+....+
T Consensus       269 ~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P  333 (802)
T PF13764_consen  269 EHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP  333 (802)
T ss_pred             HHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence            22222221  1    11111 2336666666643       3568889999999988888865444

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=95.10  E-value=0.065  Score=54.68  Aligned_cols=287  Identities=17%  Similarity=0.147  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC------ChhhHHHHHhCCChHH
Q 008585          210 PRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM------SAEMARAIVGHGGVRP  282 (560)
Q Consensus       210 ~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~------~~~~~~~l~~~g~i~~  282 (560)
                      ..+|-++..+|..++.+-. .+..+++  +...+..-+.+..+.++++++.++.++-.      .|+....-...+.+..
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            4577888888888887654 3333333  23334444566789999999999988842      1222222222222221


Q ss_pred             HH------HH-hccCChHHHHHHHHHHHHhcCC-----chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585          283 LI------EI-CQTGDSVSQAAAACTLKNISAV-----PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS  350 (560)
Q Consensus       283 Lv------~l-l~~~~~~~~~~a~~aL~nLa~~-----~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~  350 (560)
                      ..      .. -.+..+..+...|.++.++...     ++-++.     ..+.+..=..+..+.-++..|.+++.-..-+
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH  421 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYVLH  421 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence            11      11 1223455678889999888641     111111     0111110011111113556666666666654


Q ss_pred             ChhHHHHH-HhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHH-HHHHh------cCCHH
Q 008585          351 NENLRRSV-VSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-----SVSQEVLISLGFFPRL-VHVLK------AGSLG  415 (560)
Q Consensus       351 ~~~~~~~i-~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~L-v~lL~------~~~~~  415 (560)
                      . ..|... +-......++..+.+  -..|+.+.++++|+..     ..+.+.. ...++..+ ..+++      .....
T Consensus       422 p-~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~-~eR~sg~ll~~~~~~A~~~~Ad~dk  499 (728)
T KOG4535|consen  422 P-CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSF-QERFSGLLLLKMLRSAIEASADKDK  499 (728)
T ss_pred             c-chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3 333322 234445555555544  4578999999999987     1221111 11222222 22222      13578


Q ss_pred             HHHHHHHHHHHHhCCh------hHHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCChh-hHHHhhhCCChHH
Q 008585          416 AQQAAASALCRVCTSA------EMKKLVGEAGCTPLLIKLL-EAKPNSVREVAAQAISSLVTLPQN-CREVKRDDKSVPN  487 (560)
Q Consensus       416 v~~~A~~aL~~La~~~------~~~~~i~~~g~i~~Lv~ll-~s~~~~v~~~A~~aL~~L~~~~~~-~~~~~~~~~~v~~  487 (560)
                      |+.+|.++|+|+..--      .++..+  .|.+..+..-. -..+..||..|+.++.||..++.- ....-......+.
T Consensus       500 V~~navraLgnllQvlq~i~~~~~~e~~--~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~  577 (728)
T KOG4535|consen  500 VKSNAVRALGNLLQFLQPIEKPTFAEII--EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA  577 (728)
T ss_pred             hhhHHHHHHhhHHHHHHHhhhccHHHHH--HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence            9999999999987541      122222  22233332222 235567999999999999866533 1111111233467


Q ss_pred             HHhccCCC-CchhhHHHHHHHH
Q 008585          488 LVQLLDPS-PQNTAKKYAVACL  508 (560)
Q Consensus       488 Lv~lL~~~-~~~~~~~~a~~~L  508 (560)
                      |.+++.+. ++. ++-.+.++|
T Consensus       578 L~~Lv~~~~NFK-VRi~AA~aL  598 (728)
T KOG4535|consen  578 LTSLVTSCKNFK-VRIRAAAAL  598 (728)
T ss_pred             HHHHHHHhccce-Eeehhhhhh
Confidence            77777654 332 444444444

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.97  E-value=0.47  Score=43.84  Aligned_cols=147  Identities=17%  Similarity=0.211  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHH
Q 008585          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLI  243 (560)
Q Consensus       171 ~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv  243 (560)
                      +.--+-.|.+.....|+.++.+.++..--.+-.+|...+     ...|..++.+++.|..+++  ....+....++|.++
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            333334455555567888888887766444555554322     6678899999999998876  566777888999999


Q ss_pred             HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh--------CCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585          244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQM  314 (560)
Q Consensus       244 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~--------~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~  314 (560)
                      ++++.++.-.+..++.++..+-.++..-..+.+        ...+..++..+ ..+......++.++-..|+..++.|..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            999999999999999999999877766544432        12222333222 335666778888888888888888776


Q ss_pred             HHh
Q 008585          315 LAE  317 (560)
Q Consensus       315 i~e  317 (560)
                      +..
T Consensus       276 L~~  278 (315)
T COG5209         276 LSS  278 (315)
T ss_pred             Hhc
Confidence            643

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=8.8  Score=43.32  Aligned_cols=302  Identities=15%  Similarity=0.130  Sum_probs=168.8

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhc------CC--CHHHHHHHHHHHHHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLT------AT--SPRIREKTVTVICSL  223 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~------~~--~~~v~~~A~~~L~~L  223 (560)
                      ..+|+.-+.....+... ...|...+..+++.. .++     =.+.++.+++.+.      .+  ++.-.+.|+..++.|
T Consensus       372 ~EYiR~~~Di~ed~~sp-~~Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl  445 (1010)
T KOG1991|consen  372 YEYIRKKFDIFEDGYSP-DTAALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSL  445 (1010)
T ss_pred             HHHHHhcCchhcccCCC-cHHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHH
Confidence            44555544444433322 223455555555433 222     1256777888777      22  366678889999988


Q ss_pred             hcC----CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhc-cCChHHHHH
Q 008585          224 AES----GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQ-TGDSVSQAA  297 (560)
Q Consensus       224 a~~----~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~  297 (560)
                      +.-    +.++.. .+.-.++.+...+++...-.|.+|||++...+. +-.....+  ..+++.....+. +.+-.++..
T Consensus       446 ~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~Ve  522 (1010)
T KOG1991|consen  446 ASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVE  522 (1010)
T ss_pred             HHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhH
Confidence            842    223333 333456777778888888999999999999983 32111111  112244445555 677788999


Q ss_pred             HHHHHHHhcCCch-hHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc-CChhHHHHHHh--CCCHHHHHHhc
Q 008585          298 AACTLKNISAVPE-VRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVS--EGGIRSLLAYL  371 (560)
Q Consensus       298 a~~aL~nLa~~~~-~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~--~g~l~~L~~ll  371 (560)
                      |+-||..+-.+.+ ...++..  .+.++.++++.+.-+. +...++...   +.. ..++......+  ........+++
T Consensus       523 AalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~---iV~~fseElsPfA~eL~q~La~~F~k~l  598 (1010)
T KOG1991|consen  523 AALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEK---IVCKFSEELSPFAVELCQNLAETFLKVL  598 (1010)
T ss_pred             HHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHH---HHHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence            9999998876543 3344444  4456666666665443 223222222   221 11222222221  12234455555


Q ss_pred             cC--------CccHHHHHHHHHHhhc-----cccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHH
Q 008585          372 DG--------PLPQESAVGALRNLVG-----SVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKK  435 (560)
Q Consensus       372 ~~--------~~~~~~a~~~L~nla~-----~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~  435 (560)
                      ..        .+-+..|+++|+.+..     .+.++.+  .+..+++.+-.+|++.-.++-+++...+..+... ++...
T Consensus       599 ~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp  678 (1010)
T KOG1991|consen  599 QTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISP  678 (1010)
T ss_pred             hccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCH
Confidence            42        2235667777777765     2333333  2334566666777777788888888888887643 55555


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       436 ~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      .|++  ..+.+.+.+....-+--....-+|.|..
T Consensus       679 ~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~v  710 (1010)
T KOG1991|consen  679 IMWG--LLELILEVFQDDGIDYFTDMMPALHNYV  710 (1010)
T ss_pred             HHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence            5543  4566666665544444455556666555

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.84  E-value=1.4  Score=43.92  Aligned_cols=170  Identities=13%  Similarity=0.120  Sum_probs=109.3

Q ss_pred             CCHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh--hhHH
Q 008585          196 SNIAALV-QLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMAR  272 (560)
Q Consensus       196 g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~  272 (560)
                      +.++.|+ ..++++++.+|+.|+++|+..+--+.   .+.. ..++.+.+.++.++..++..|+.++..+....  +...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            3444444 67788899999999999999987664   1111 23777888888889999999999999885432  2211


Q ss_pred             HH-------HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHH-hhc--CCchhHHHHHHH
Q 008585          273 AI-------VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL-LDC--GILLGSKEYAAE  342 (560)
Q Consensus       273 ~l-------~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~l-L~~--~~~~~v~~~a~~  342 (560)
                      ..       .....+..+.+.+.+.+++++..++..++.|--......   ....+..|+-+ .+.  .+...++..-..
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence            11       123456777888888899999999999999854322221   12233333333 221  122256666666


Q ss_pred             HHHHHccCChhHHHHHHhCCCHHHHHHhccC
Q 008585          343 CLQNLTASNENLRRSVVSEGGIRSLLAYLDG  373 (560)
Q Consensus       343 ~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~  373 (560)
                      ++-..+..++.++ ..+....++.+..+.+.
T Consensus       179 Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  179 FFPVYASSSPENQ-ERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHcCCHHHH-HHHHHHHHHHHHHHHhC
Confidence            7777787777665 44455556666655543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=3  Score=47.31  Aligned_cols=247  Identities=16%  Similarity=0.156  Sum_probs=144.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCC----hhh
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS----AEM  270 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~----~~~  270 (560)
                      +.++.|++.|++.+..++=.|++.++.++...+  ..+ ...++...+.++... +...-..++-+|..|+..    +..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            678888889999999999999999999988765  112 123566677766554 355667888999998763    111


Q ss_pred             HHHHHhCCChHHHHHHhcc--------CChHHHHHHHHHHHHhcCC--c-hhHHHHHhcCcHHH-HHHHhhcCCchhHHH
Q 008585          271 ARAIVGHGGVRPLIEICQT--------GDSVSQAAAACTLKNISAV--P-EVRQMLAEEGIVSV-MIKLLDCGILLGSKE  338 (560)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~--------~~~~~~~~a~~aL~nLa~~--~-~~~~~i~e~g~v~~-L~~lL~~~~~~~v~~  338 (560)
                      ...     ++|.++.-|.-        ....+|..|+.++|.++..  + +... +.. ...+. +...+-+.+- ..|+
T Consensus       418 l~d-----VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrev-ncRR  489 (1133)
T KOG1943|consen  418 LED-----VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREV-NCRR  489 (1133)
T ss_pred             HHH-----HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchh-hHhH
Confidence            222     23555555532        2457899999999999852  2 2222 211 12222 2233334554 7889


Q ss_pred             HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHH-----HhcCC
Q 008585          339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHV-----LKAGS  413 (560)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~l-----L~~~~  413 (560)
                      .|..++.+......+.      .-|++ |+...+     ..++.-..|.-..-....-.-.|...++++-     +.+-+
T Consensus       490 AAsAAlqE~VGR~~n~------p~Gi~-Lis~~d-----y~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd  557 (1133)
T KOG1943|consen  490 AASAALQENVGRQGNF------PHGIS-LISTID-----YFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWD  557 (1133)
T ss_pred             HHHHHHHHHhccCCCC------CCchh-hhhhcc-----hhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhccccccc
Confidence            8888888776532221      00111 111111     1122222221110000000112333444433     44568


Q ss_pred             HHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          414 LGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       414 ~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ..+++.++++|.+|+.. +++    ...+.+++|++...+++...|.-+.-+...+.
T Consensus       558 ~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~  610 (1133)
T KOG1943|consen  558 VKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVI  610 (1133)
T ss_pred             HHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence            99999999999998843 332    23467888888888888888877666666665

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.83  E-value=1.1  Score=45.96  Aligned_cols=210  Identities=16%  Similarity=0.185  Sum_probs=123.2

Q ss_pred             hhchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC-CCH-HHHHHHHHHHHHHhcCCc
Q 008585          152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSP-RIREKTVTVICSLAESGS  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~-~v~~~A~~~L~~La~~~~  228 (560)
                      ....|.+++..|..++ ...|..++-.|..-+. ++..+..+...|.++.+.+.+.. ++. ..--.++.++..++.+..
T Consensus        19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~   97 (361)
T PF07814_consen   19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL   97 (361)
T ss_pred             HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence            4556888898888544 4557777777777776 77888899999999999999843 433 333444555666666554


Q ss_pred             hHHHHHhCCCHHHHHHhhhc-------C--C-----------------------------------HHHHHHHHHHHHHh
Q 008585          229 CENWLVSEGVLPPLIRLVES-------G--S-----------------------------------TVGKEKATISLQRL  264 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~-------~--~-----------------------------------~~~~~~a~~~L~~L  264 (560)
                      .-..+.+.+....+++++.-       .  +                                   ...+..+..++..+
T Consensus        98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l  177 (361)
T PF07814_consen   98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL  177 (361)
T ss_pred             chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence            44444445555555666650       0  0                                   00111122333333


Q ss_pred             h--------C------C-hhhHHHHHhCCChHHHHHHhcc----C-------Ch-----HHHHHHHHHHHHhcC-CchhH
Q 008585          265 S--------M------S-AEMARAIVGHGGVRPLIEICQT----G-------DS-----VSQAAAACTLKNISA-VPEVR  312 (560)
Q Consensus       265 a--------~------~-~~~~~~l~~~g~i~~Lv~ll~~----~-------~~-----~~~~~a~~aL~nLa~-~~~~~  312 (560)
                      +        .      . +..++.+...|++..+++++.+    .       ++     ..-..++.+|-|.+. +++++
T Consensus       178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq  257 (361)
T PF07814_consen  178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ  257 (361)
T ss_pred             HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence            1        0      0 1113445556788998888752    1       11     233567888888874 55777


Q ss_pred             HHHHh--cCcH-HHHHHHhhcCCc--hhHHHHHHHHHHHHccCChhHHHHHHhCC
Q 008585          313 QMLAE--EGIV-SVMIKLLDCGIL--LGSKEYAAECLQNLTASNENLRRSVVSEG  362 (560)
Q Consensus       313 ~~i~e--~g~v-~~L~~lL~~~~~--~~v~~~a~~~L~~La~~~~~~~~~i~~~g  362 (560)
                      ..+..  .+.+ ..+..++....+  ......+++.+.|++.+++..++.+...+
T Consensus       258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~  312 (361)
T PF07814_consen  258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK  312 (361)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence            77766  2222 233333322211  13467889999999999877666665543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.71  E-value=0.31  Score=44.88  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCchHHHHHhC----------------CCHHHHHHhhhcC------CHHHHHHHHHHHHHhh
Q 008585          208 TSPRIREKTVTVICSLAESGSCENWLVSE----------------GVLPPLIRLVESG------STVGKEKATISLQRLS  265 (560)
Q Consensus       208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~----------------g~i~~Lv~lL~~~------~~~~~~~a~~~L~~La  265 (560)
                      ++...-..++..|+|++..++....+.+.                ..+..|+..+..+      ...-..+.+.++.|++
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            34455677888888888877654433322                2566677666552      3345678999999999


Q ss_pred             CChhhHHHHHhC--CC--hHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhc---CcHHHHHHHhh
Q 008585          266 MSAEMARAIVGH--GG--VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE---GIVSVMIKLLD  329 (560)
Q Consensus       266 ~~~~~~~~l~~~--g~--i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~---g~v~~L~~lL~  329 (560)
                      ..++.+..+...  +.  +..|+.+..+.+..-|.-++.+|.|+|...+....+...   +++|.++--|.
T Consensus        87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            999999988863  34  677888888776666678999999999887777777663   45555544444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.54  E-value=1.6  Score=44.74  Aligned_cols=269  Identities=15%  Similarity=0.169  Sum_probs=146.7

Q ss_pred             CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHH-HHhhCChhhHH
Q 008585          196 SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISL-QRLSMSAEMAR  272 (560)
Q Consensus       196 g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L-~~La~~~~~~~  272 (560)
                      +-+..++.-|+.+ ...+|..++.-|..-+.+++.+..+...|....+++.+.+. +......++.++ .-++.+.....
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~  100 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH  100 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence            3566777777633 47888888888888888999999999999999999999554 332444444444 44455555555


Q ss_pred             HHHhCCChHHHHHHhccC-ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc--------CCchhHHHHHHHH
Q 008585          273 AIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC--------GILLGSKEYAAEC  343 (560)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~--------~~~~~v~~~a~~~  343 (560)
                      .+.+.+....++.++... ........-      .....+-.+.. ...+..+-+.+..        ......+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            555566666667777611 000000000      00000001110 1122222222211        1112345555655


Q ss_pred             HHHHc--------------cCChhHHHHHHhCCCHHHHHHhcc----C---------Cc-----cHHHHHHHHHHhhc--
Q 008585          344 LQNLT--------------ASNENLRRSVVSEGGIRSLLAYLD----G---------PL-----PQESAVGALRNLVG--  389 (560)
Q Consensus       344 L~~La--------------~~~~~~~~~i~~~g~l~~L~~ll~----~---------~~-----~~~~a~~~L~nla~--  389 (560)
                      +..++              ...+.+++.+.+.||+..++..+.    .         +.     ....++++|-|.+.  
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            55553              122345677777889999998874    1         11     23567888888776  


Q ss_pred             cccHHHHHh--CCcHHHHH-HHHhc---CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHc-----------
Q 008585          390 SVSQEVLIS--LGFFPRLV-HVLKA---GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE-----------  451 (560)
Q Consensus       390 ~~~~~~l~~--~~~i~~Lv-~lL~~---~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~-----------  451 (560)
                      ..++..+..  .+.++.+. .++..   .....+..+++.+.|++.+ ++.+..+...++...+..+..           
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            344444432  23333333 33332   2345567888999999965 666666655543332221111           


Q ss_pred             ---cCCHHHHHHHHHHHHHhcCC
Q 008585          452 ---AKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       452 ---s~~~~v~~~A~~aL~~L~~~  471 (560)
                         .+..+....++.+|-||+.+
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEH  356 (361)
T ss_pred             ccccccchHHHHHHHhHHHheee
Confidence               12233556667777777643

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.50  E-value=2.4  Score=42.94  Aligned_cols=158  Identities=14%  Similarity=0.100  Sum_probs=114.7

Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc-CChhHHHHHHhC--CCHHHHHHhccC------C---------
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVSE--GGIRSLLAYLDG------P---------  374 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~~--g~l~~L~~ll~~------~---------  374 (560)
                      +.+.+.. +..+..-|.+... .+...++..|.+++. ......+.+.+.  -..+.+.+++..      .         
T Consensus        51 ~~iL~~~-~k~lyr~L~~~~~-~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~  128 (330)
T PF11707_consen   51 RSILQNH-LKLLYRSLSSSKP-SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP  128 (330)
T ss_pred             HHHHHHH-HHHHHHHhCcCcH-HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence            3444433 7788888887775 788899999999998 665666666652  233444554421      1         


Q ss_pred             ccHHHHHHHHHHhhc---cccHHHH-HhCCcHHHHHHHHhcCCHHHHHHHHHHHHH-HhCC----hhHHHHHHhcCCHHH
Q 008585          375 LPQESAVGALRNLVG---SVSQEVL-ISLGFFPRLVHVLKAGSLGAQQAAASALCR-VCTS----AEMKKLVGEAGCTPL  445 (560)
Q Consensus       375 ~~~~~a~~~L~nla~---~~~~~~l-~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~-La~~----~~~~~~i~~~g~i~~  445 (560)
                      ++|...+.++..+..   +.....+ ...+.+..+.+.|..+++++......++.. +..+    ...+-.+.+...+..
T Consensus       129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~  208 (330)
T PF11707_consen  129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ  208 (330)
T ss_pred             CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence            778888888888887   2334444 455778899999999889999999999985 4444    345566667778999


Q ss_pred             HHHHHccCCH----HHHHHHHHHHHHhcCCC
Q 008585          446 LIKLLEAKPN----SVREVAAQAISSLVTLP  472 (560)
Q Consensus       446 Lv~ll~s~~~----~v~~~A~~aL~~L~~~~  472 (560)
                      |..+....++    .+++.+-+.|..++.++
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence            9998877666    89999999999998554

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.50  E-value=1.5  Score=46.03  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=110.6

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCc---hhHHHHHHHHHHHHccCChhHHHH
Q 008585          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL---LGSKEYAAECLQNLTASNENLRRS  357 (560)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~---~~v~~~a~~~L~~La~~~~~~~~~  357 (560)
                      ..+.+++.++++..+..+...|..++.+......++...++..|..++.++..   .++...++.++..+-.+.-... .
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW-~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW-E  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee-e
Confidence            55678888889999988999999999999999999999999999999998874   2345555555555543221111 1


Q ss_pred             HHhCCCHHHHHHhcc----CCccHHHHHHHHHHhhc-c-ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--
Q 008585          358 VVSEGGIRSLLAYLD----GPLPQESAVGALRNLVG-S-VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--  429 (560)
Q Consensus       358 i~~~g~l~~L~~ll~----~~~~~~~a~~~L~nla~-~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--  429 (560)
                      .+...++.....+..    +..+...|+..|-++.. . ...+.+.+.--++.|+..++..+..++..|...+..+..  
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA  244 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence            111222333333332    24567888888888887 3 345666777789999999999999999998777777653  


Q ss_pred             ChhHHHHHHhc
Q 008585          430 SAEMKKLVGEA  440 (560)
Q Consensus       430 ~~~~~~~i~~~  440 (560)
                      .++-++.+.+.
T Consensus       245 ~~~~R~~~~~~  255 (713)
T KOG2999|consen  245 PDDKRFEMAKS  255 (713)
T ss_pred             ChHHHHHHHHH
Confidence            24455555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.35  E-value=3.4  Score=46.15  Aligned_cols=177  Identities=22%  Similarity=0.183  Sum_probs=110.9

Q ss_pred             HHHHhhCC-hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcH--HHHHHHhhcCCchh
Q 008585          260 SLQRLSMS-AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLG  335 (560)
Q Consensus       260 ~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v--~~L~~lL~~~~~~~  335 (560)
                      +|++++.+ +++...+.+.||+..+...++. ...+++..+.+.+.|++...+.+..+.....+  ..+-.++..-+..+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            55677654 8889999999999999999985 56788899999999999755444333321111  23333444433336


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHH-HHHHHhc-CC
Q 008585          336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPR-LVHVLKA-GS  413 (560)
Q Consensus       336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~-Lv~lL~~-~~  413 (560)
                      .-++++..|..+..+.+..    .+.+.-+.         +.+.-..++..+..  ....+.....+.+ +..++.. ..
T Consensus       574 rsY~~~siLa~ll~~~~~~----~~~~~r~~---------~~~~l~e~i~~~~~--~~~~~~~~~~f~~~~~~il~~s~~  638 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKT----TECVFRNS---------VNELLVEAISRWLT--SEIRVINDRSFFPRILRILRLSKS  638 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcC----ccccchHH---------HHHHHHHHhhccCc--cceeehhhhhcchhHHHHhcccCC
Confidence            7889999999998865431    11111111         11111112222211  1111222333333 5556654 56


Q ss_pred             HHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHc
Q 008585          414 LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE  451 (560)
Q Consensus       414 ~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~  451 (560)
                      ++.+..|.+++.++.. ++++.+.+.+.|+++.+.+.-.
T Consensus       639 ~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (699)
T KOG3665|consen  639 DGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV  677 (699)
T ss_pred             CchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence            8999999999999985 4789999999999988877664

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.10  E-value=6.5  Score=40.77  Aligned_cols=184  Identities=16%  Similarity=0.208  Sum_probs=119.5

Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhCChh----hHHHHHhCCChHHHHHHhccC-------ChHHHHHHHHHHHHhcCC
Q 008585          240 PPLIRLVESGSTVGKEKATISLQRLSMSAE----MARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKNISAV  308 (560)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~----~~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLa~~  308 (560)
                      ..+..+++..+..-|-.+.-...++..+++    ++..+.+.-|.+.+-+++.++       +...+..+...|.-.|+.
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            335566666677777777777788877654    355677888888888888753       223456677788888888


Q ss_pred             chhH--HHHHhcCcHHHHHHHhhcCCchh------HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc---H
Q 008585          309 PEVR--QMLAEEGIVSVMIKLLDCGILLG------SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP---Q  377 (560)
Q Consensus       309 ~~~~--~~i~e~g~v~~L~~lL~~~~~~~------v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~---~  377 (560)
                      +|..  +.++  ..||.+..++..+.+.+      +.+.+..||..++...++ .+.++..|+++.+.++-..++.   +
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhH
Confidence            7654  3444  46899999987654333      778899999999998655 4578899999999987654332   3


Q ss_pred             HHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          378 ESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       378 ~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      .-++.++.-...     ++....+..  .|..+-.-+...+...+.+.+..|..+-
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            344444443333     233332221  1333333344456677888888888543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=1.8  Score=47.80  Aligned_cols=210  Identities=10%  Similarity=0.043  Sum_probs=131.5

Q ss_pred             hccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585          287 CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (560)
Q Consensus       287 l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (560)
                      +.++-+.++..++..|+.+....+-+..+..++++......+++.++ .+--+|...+..||.-.++        ..++.
T Consensus       736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcevy~e--------~il~d  806 (982)
T KOG4653|consen  736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEVYPE--------DILPD  806 (982)
T ss_pred             hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHhcch--------hhHHH
Confidence            34455678899999999999876777778889999999999999987 8888888876667653332        33677


Q ss_pred             HHHhccC------CccHHHHHHHHHHhhcc--ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh--HHHH
Q 008585          367 LLAYLDG------PLPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE--MKKL  436 (560)
Q Consensus       367 L~~ll~~------~~~~~~a~~~L~nla~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~--~~~~  436 (560)
                      +.+.-.+      ++.+...-.+|.++...  +-..... ...+...+..+++++...+..++..+++++.-..  ....
T Consensus       807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~  885 (982)
T KOG4653|consen  807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF  885 (982)
T ss_pred             HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence            7664322      34555556777777652  2111111 1345556666676677778889999999885422  1223


Q ss_pred             HHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCC-hhhHHHhh--hCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585          437 VGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLP-QNCREVKR--DDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (560)
Q Consensus       437 i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~~~~-~~~~~~~~--~~~~v~~Lv~lL~~~~~~~~~~~a~~~L  508 (560)
                      +.  .+...++.+.+ ++..-+|..|+..+..+..+- ...-++..  --+....+.+.....+++..+..+..++
T Consensus       886 ~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  886 FH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             HH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            32  23555555555 456778999999999887432 22222221  0123344555555555555665555444

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.02  E-value=5.7  Score=41.84  Aligned_cols=163  Identities=17%  Similarity=0.150  Sum_probs=116.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCH----HHHHHHHHHHHHhhCChhhHH
Q 008585          197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGST----VGKEKATISLQRLSMSAEMAR  272 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~~~~~a~~~L~~La~~~~~~~  272 (560)
                      ....+.+.+.+++...+..+..-|..++.+......++...++..|.+++.++..    .+......++..+-.+.-..|
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3556778888888888888999999999999888888888999999999998744    445555555555544433445


Q ss_pred             HHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          273 AIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ..+...+|.....+...  .+..+-..|+..|-++..+. ..+..+.++--+..++..+...+. .++..|...+..+..
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~-~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ-RIQTCAIALLNALFR  242 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch-HHHHHHHHHHHHHHh
Confidence            55555555555555532  34456677888888887544 577778888889999999998886 788888777777765


Q ss_pred             C-ChhHHHHHHh
Q 008585          350 S-NENLRRSVVS  360 (560)
Q Consensus       350 ~-~~~~~~~i~~  360 (560)
                      . .+..|..+.+
T Consensus       243 ~a~~~~R~~~~~  254 (713)
T KOG2999|consen  243 KAPDDKRFEMAK  254 (713)
T ss_pred             hCChHHHHHHHH
Confidence            2 2334444443

>PRK14707 hypothetical protein; Provisional

Probab=93.99  E-value=21  Score=44.04  Aligned_cols=378  Identities=15%  Similarity=0.106  Sum_probs=194.8

Q ss_pred             cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCC-HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHH
Q 008585          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPL  242 (560)
Q Consensus       165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L  242 (560)
                      ..+..+...|+..|..-+-++++....+ +.-++...++-| +-++ ...+..|...-..++.+++.++.+-..| +..+
T Consensus       301 wpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~  378 (2710)
T PRK14707        301 WADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSV  378 (2710)
T ss_pred             CCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHH
Confidence            4566666677777777666666655433 333444444444 4555 6666666667777777777666665444 5556


Q ss_pred             HHhhhc-C-CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH-HhcCCchhHHHHHhcC
Q 008585          243 IRLVES-G-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK-NISAVPEVRQMLAEEG  319 (560)
Q Consensus       243 v~lL~~-~-~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~-nLa~~~~~~~~i~e~g  319 (560)
                      ++.|.. . ++..+..+...-..+..+++.+..+-..|+-..|-.+.+=++..+-..++.+|. .++.+.+.++.|--.+
T Consensus       379 lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~  458 (2710)
T PRK14707        379 LNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN  458 (2710)
T ss_pred             HhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH
Confidence            665553 3 445555555555667777777777766665555555555455555555555554 5566778887776655


Q ss_pred             cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc----cccHHH
Q 008585          320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG----SVSQEV  395 (560)
Q Consensus       320 ~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~----~~~~~~  395 (560)
                      +...|-.+-+=++. .+...++..|..=..++...++.+- .-.+..-+.-|+.-.-+..+..++..++.    +.....
T Consensus       459 va~~LnalSKWPd~-p~c~~aa~~La~~l~~~~~l~~a~~-~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~  536 (2710)
T PRK14707        459 VTQALDALSKWPDT-PICGQTASALAARLAHERRLRKALK-PQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRK  536 (2710)
T ss_pred             HHHHHHHhhcCCCC-hhHHHHHHHHHHHhcccHHHHhhcC-HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhh
Confidence            44444333333444 5565566665544444455443332 11222233333332223355556655554    211111


Q ss_pred             HHhCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCC
Q 008585          396 LISLGFFPRLVHVL-KAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTLP  472 (560)
Q Consensus       396 l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~~~  472 (560)
                      .+...-+..+++-+ +..+...-+.++..|..+. ..+..++.+--.+ |..+++.+.. ++......|+..|..-...+
T Consensus       537 ~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~-Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~  615 (2710)
T PRK14707        537 AFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQG-VVIVLNALSKWPDTAVCAEAVNALAERLVDE  615 (2710)
T ss_pred             hhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhH-HHHHHHhhccCCCcHHHHHHHHHHHHHhccC
Confidence            11222233444444 3455555555665666544 3355556664333 6666666643 33333334444444444444


Q ss_pred             hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHH-HHhCCChhhHHHHHHcChhHHHHHhhccCc-hhHHHHHHHH
Q 008585          473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL-ASLSPSKKCKKLMISYGAIGYLKKLSEMDI-PGARKLLERL  548 (560)
Q Consensus       473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L-~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~-~~akkl~~~l  548 (560)
                      +....-+ +...+..++.-|..-+....-..++..| ..+..+...+..|-..+.--.|-.|.+-.+ +..++.++.|
T Consensus       616 ~~lr~~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~L  692 (2710)
T PRK14707        616 PDLRKEL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGM  692 (2710)
T ss_pred             hhhhhhc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHH
Confidence            4432222 2344566666665554443333343333 345555555555555555545555544333 3444444443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=93.97  E-value=2.6  Score=43.47  Aligned_cols=184  Identities=15%  Similarity=0.167  Sum_probs=107.5

Q ss_pred             hHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHH-HHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchHH
Q 008585          155 NTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVL-AVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       155 ~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~-~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      .|..++..+... ..+.+..|+..|..+..++...+= ...+ ..+..+++.|.. .+..++..|+++|..+..+...+-
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l  365 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL  365 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence            455666655433 456788888888888876632111 1111 245567788877 668889999999999998876332


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHH-HHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC--
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATIS-LQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--  308 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~-L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--  308 (560)
                      .=-.+-++..+++.-++....+...|... +.-++...+...       |..+..++...|...-..+...+..+...  
T Consensus       366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~  438 (516)
T KOG2956|consen  366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLS  438 (516)
T ss_pred             hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC
Confidence            21122245566666666655555444444 444444332221       12233333344444444455455555431  


Q ss_pred             -chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          309 -PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       309 -~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                       ++.-..+  ..+.|++++--++.+. .||..|..||-.+..
T Consensus       439 ~EeL~~ll--~diaP~~iqay~S~SS-~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  439 AEELLNLL--PDIAPCVIQAYDSTSS-TVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHHhh--hhhhhHHHHHhcCchH-HhhhhHHHhHHHHHH
Confidence             1222222  3578889988888886 899999999887764

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.96  E-value=3.6  Score=42.39  Aligned_cols=95  Identities=12%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCCchH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-AT---SPRIREKTVTVICSLAESGSCE  230 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~---~~~v~~~A~~~L~~La~~~~~~  230 (560)
                      .++.++..-..-++.....|+..+..+...+|-....+.+.|.++.+++.+. ..   +.++...--.+++.|+-+....
T Consensus       110 sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl  189 (379)
T PF06025_consen  110 SLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGL  189 (379)
T ss_pred             HHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHH
Confidence            3444455445667888889999999999999988888889999999999888 33   4677777778999999999999


Q ss_pred             HHHHhCCCHHHHHHhhhcC
Q 008585          231 NWLVSEGVLPPLIRLVESG  249 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~  249 (560)
                      +.+.+.+.++.+++++.+.
T Consensus       190 ~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  190 EKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHHHhcChHHHHHHHhCCH
Confidence            9999999999999988764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.80  E-value=1.1  Score=40.82  Aligned_cols=89  Identities=21%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcC-CHHHHHHHH
Q 008585          374 PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAG-CTPLLIKLL  450 (560)
Q Consensus       374 ~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g-~i~~Lv~ll  450 (560)
                      |.++.+++-+++-|+.  +...     ...++.+...|+++++.|+..|+.+|.+|....-.+    -.| .+..++..+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l   72 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL   72 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence            4567778888888876  2222     346888999999999999999999999987541111    012 236777788


Q ss_pred             ccCCHHHHHHHHHHHHHhcCC
Q 008585          451 EAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       451 ~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      .+.+++++..|...+..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999999744

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.70  E-value=13  Score=40.64  Aligned_cols=129  Identities=18%  Similarity=0.088  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc
Q 008585          210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT  289 (560)
Q Consensus       210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~  289 (560)
                      ..+...+++.+..+-..+..-+ + -.|.+..+++...+.+..+|..++..|..+.........-+-.+....+..-+.+
T Consensus        60 dRIl~fla~fv~sl~q~d~e~D-l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEED-L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhh-H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence            4555556666665554333222 2 2356777777777889999999999999997633333333345556777777778


Q ss_pred             CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHH
Q 008585          290 GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL  344 (560)
Q Consensus       290 ~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L  344 (560)
                      ..|.+|..|..+|+.+-..+..-    +..++..+..++++++..+||..++..+
T Consensus       138 rep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  138 REPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             cCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            89999999999999997432110    1236778888888766668998776544

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.67  E-value=9  Score=41.23  Aligned_cols=170  Identities=15%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-chhHHHHHh
Q 008585          240 PPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAE  317 (560)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e  317 (560)
                      ..++..-+ ++...+..|+..+.+...+ |+....-     +..++++|.+.+..+|..|...|..+|.+ ++....+  
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--   97 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--   97 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence            34444444 5788999999999999776 6655533     38999999999999999999999999974 4666555  


Q ss_pred             cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc----C-CccHHHHHHHHHHhhc---
Q 008585          318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD----G-PLPQESAVGALRNLVG---  389 (560)
Q Consensus       318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~----~-~~~~~~a~~~L~nla~---  389 (560)
                         +.+|+++|.+++. .....+-.+|..+...++..        .+..++..+.    . ..+++.++.+|..=..   
T Consensus        98 ---aDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   98 ---ADVLVQLLQTDDP-VELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ---HHHHHHHTT---H-HHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ---HHHHHHHHhcccH-HHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence               5778999988775 44555555666665544432        1444444442    2 4478888888865443   


Q ss_pred             cc-cH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585          390 SV-SQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (560)
Q Consensus       390 ~~-~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~  429 (560)
                      .+ .. ..=.+.-++..+-..|.+-..+--......|..+-.
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            11 11 111223345555566654333333344455555543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.67  E-value=0.81  Score=43.97  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC
Q 008585          295 QAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG  373 (560)
Q Consensus       295 ~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~  373 (560)
                      ...|+.+|--++ -++..+..+.....+..++.++.......++..++.+|..+..+++.+.+.+-+.+|+..+..++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            455667777666 4889999999999999999999654334899999999999998888888877789999999999977


Q ss_pred             C----ccHHHHHHHHHHhhc
Q 008585          374 P----LPQESAVGALRNLVG  389 (560)
Q Consensus       374 ~----~~~~~a~~~L~nla~  389 (560)
                      .    +++..++.+|.-...
T Consensus       188 ~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccHHHhHHHHHHHHHHHc
Confidence            2    345556666655554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.31  E-value=0.16  Score=31.39  Aligned_cols=29  Identities=31%  Similarity=0.570  Sum_probs=25.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAES  226 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (560)
                      +|.++++++++++++|..|+.+|+.++..
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.30  E-value=0.61  Score=43.15  Aligned_cols=168  Identities=15%  Similarity=0.126  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHH
Q 008585          378 ESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAG-----SLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKL  449 (560)
Q Consensus       378 ~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~l  449 (560)
                      -+|+..|..++. ++.+..+++.++--.+..+|...     -..++..+...++.+..+  ++..+.+.....+|..+++
T Consensus       118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            466777777777 56666666666655555555432     256788888999999865  6777888888999999999


Q ss_pred             HccCCHHHHHHHHHHHHHhcCCChhhHH-------HhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHH
Q 008585          450 LEAKPNSVREVAAQAISSLVTLPQNCRE-------VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMI  522 (560)
Q Consensus       450 l~s~~~~v~~~A~~aL~~L~~~~~~~~~-------~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~  522 (560)
                      +..+++--+..|+..+..+..++.....       |..-...+..++.-+-+.+....-+.++.+...|+..+..|..+.
T Consensus       198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~  277 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS  277 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence            9999888888899888888776654322       222223334455444443334466699999999999888887664


Q ss_pred             H---cChhHHHHHhhccCchhHHHHH
Q 008585          523 S---YGAIGYLKKLSEMDIPGARKLL  545 (560)
Q Consensus       523 ~---~g~i~~L~~L~~~~~~~akkl~  545 (560)
                      .   .|.-..--.++-.+|.|.|+-+
T Consensus       278 ~~lP~~Lrd~tfs~vl~dD~~sk~Cl  303 (315)
T COG5209         278 SKLPDGLRDDTFSLVLADDGGSKECL  303 (315)
T ss_pred             ccCCccccccHHHHHHHhcCChHHHH
Confidence            3   2333333334445555666543

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.19  E-value=4.9  Score=41.80  Aligned_cols=252  Identities=13%  Similarity=0.030  Sum_probs=130.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHH
Q 008585          206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPL  283 (560)
Q Consensus       206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~L  283 (560)
                      ++++..++..|++.|++.+...+.+..-...-.+..++.-|-+ .+.+++..+..+|..+.....+.. ...=-++.-.+
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl  347 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL  347 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence            3456788999999999999874322111122245666665554 477888888888877755333222 11112333456


Q ss_pred             HHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH
Q 008585          284 IEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV  359 (560)
Q Consensus       284 v~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~  359 (560)
                      ..+..+.+++++..+...+..|+.  +.+.+..++|  .+....++--+.+.++  -...||+.....+..+-. ++...
T Consensus       348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p--~va~ACr~~~~~c~p~l~-rke~~  424 (533)
T KOG2032|consen  348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNP--YVARACRSELRTCYPNLV-RKELY  424 (533)
T ss_pred             HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCCh--HHHHHHHHHHHhcCchhH-HHHHH
Confidence            677888999999999988888874  4466666665  2222223333445553  345567776666653322 22111


Q ss_pred             hCCCHHHHHHhccCCccHHHHHHHHHHhhc---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHH
Q 008585          360 SEGGIRSLLAYLDGPLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMK  434 (560)
Q Consensus       360 ~~g~l~~L~~ll~~~~~~~~a~~~L~nla~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~  434 (560)
                        +.++..+   +..-.+..  .+....|.   +-.++...  -.......++++.-+.++..+...-.++..+  +..+
T Consensus       425 --~~~q~~l---d~~~~~~q--~Fyn~~c~~L~~i~~d~l~--~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c  495 (533)
T KOG2032|consen  425 --HLFQESL---DTDMARFQ--AFYNQWCIQLNHIHPDILM--LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAAC  495 (533)
T ss_pred             --HHHhhhh---HHhHHHHH--HHHHHHHHHHhhhCHHHHH--HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHH
Confidence              0111111   00000111  11111111   00111000  0011122233333456666666555555533  3334


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       435 ~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ....-.-....|-.+...+-++++..|..|+..+.
T Consensus       496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            33322334555666667788899999999887764

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.13  E-value=9.2  Score=44.03  Aligned_cols=225  Identities=16%  Similarity=0.195  Sum_probs=128.8

Q ss_pred             hCCCHHHHHH---hh-cCCCHHHHHHHHHHHHHHhcCCchHHHHHhC--CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC
Q 008585          194 GRSNIAALVQ---LL-TATSPRIREKTVTVICSLAESGSCENWLVSE--GVLPPLIRLVESGSTVGKEKATISLQRLSMS  267 (560)
Q Consensus       194 ~~g~v~~Lv~---lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  267 (560)
                      +++.+..+..   .. ++.+..+|..+-++|..+...++......+.  .+...+..-+++.+...+...+.||..|-..
T Consensus       648 ~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~  727 (1176)
T KOG1248|consen  648 TESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL  727 (1176)
T ss_pred             cchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence            3444554442   22 3346899999999999999885533322221  2344455555556777788888888887442


Q ss_pred             -h-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcC------cHHHHHHHhhcC--CchhHH
Q 008585          268 -A-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEG------IVSVMIKLLDCG--ILLGSK  337 (560)
Q Consensus       268 -~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g------~v~~L~~lL~~~--~~~~v~  337 (560)
                       + +....+ - ..|+.++=.++..+...++.+..+|..++.    .....+.|      .+..++..+.-+  .+ ..+
T Consensus       728 ~~~e~~~~i-~-k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~  800 (1176)
T KOG1248|consen  728 LSAEHCDLI-P-KLIPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STR  800 (1176)
T ss_pred             ccHHHHHHH-H-HHHHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHH
Confidence             2 222222 1 123333333477788889999999988873    11222222      566666665543  21 223


Q ss_pred             HHH--HHHHHHHccCChhHHHHHHhCCCHHHHHHh----ccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHH
Q 008585          338 EYA--AECLQNLTASNENLRRSVVSEGGIRSLLAY----LDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVH  407 (560)
Q Consensus       338 ~~a--~~~L~~La~~~~~~~~~i~~~g~l~~L~~l----l~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~  407 (560)
                      ..+  +-++..+....    ..+...+.+..+++.    |.+  +.+...|++++..++.  ++..-.-.....++.+..
T Consensus       801 ~~as~Ivai~~il~e~----~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~  876 (1176)
T KOG1248|consen  801 VVASDIVAITHILQEF----KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA  876 (1176)
T ss_pred             HHHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH
Confidence            222  33344433311    122333334444444    433  6788999999999987  322222222336777888


Q ss_pred             HHhcCCHHHHHHHHHHHHHHhC
Q 008585          408 VLKAGSLGAQQAAASALCRVCT  429 (560)
Q Consensus       408 lL~~~~~~v~~~A~~aL~~La~  429 (560)
                      ++......++...-..+-.|.+
T Consensus       877 ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  877 LSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHH
Confidence            7777788888888888888874

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.91  E-value=0.16  Score=31.46  Aligned_cols=29  Identities=31%  Similarity=0.427  Sum_probs=25.1

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585          401 FFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (560)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~  429 (560)
                      ++|.++++++++++.|+..|+.+|++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37889999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=92.89  E-value=8.1  Score=42.23  Aligned_cols=153  Identities=15%  Similarity=0.070  Sum_probs=102.8

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHH-hhcCCchhHHHHHHHHHHHHccCChhHHHHHH
Q 008585          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL-LDCGILLGSKEYAAECLQNLTASNENLRRSVV  359 (560)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~l-L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~  359 (560)
                      +.+-+++.+.+|-+|...+.++.---...      ...++|..|++. +.+.++ +||+.|..+|+-++..+++.     
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nD-DVrRaAVialGFVl~~dp~~-----  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVND-DVRRAAVIALGFVLFRDPEQ-----  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccch-HHHHHHHHHheeeEecChhh-----
Confidence            44457778889999988776664211100      113577778887 556665 89999999999999988765     


Q ss_pred             hCCCHHHHHHhccC---CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh--CChhH
Q 008585          360 SEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC--TSAEM  433 (560)
Q Consensus       360 ~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La--~~~~~  433 (560)
                          ++..+.+|..   +-+|..+.-+|+-.|. .-..+      .+..|-.+..+...-|++-|+.++.-+-  +++..
T Consensus       590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~  659 (929)
T KOG2062|consen  590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL  659 (929)
T ss_pred             ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence                5666777743   7789999999999887 33332      2333444445566788999998888765  23444


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHH
Q 008585          434 KKLVGEAGCTPLLIKLLEAKPNSV  457 (560)
Q Consensus       434 ~~~i~~~g~i~~Lv~ll~s~~~~v  457 (560)
                      ....  .++.+.+.+.+..++++.
T Consensus       660 ~pkv--~~frk~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  660 CPKV--NGFRKQLEKVINDKHEDG  681 (929)
T ss_pred             CchH--HHHHHHHHHHhhhhhhHH
Confidence            4443  456677777777776653

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.78  E-value=0.89  Score=41.70  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=79.0

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC---------CCHHHHHHHHHHHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA---------TSPRIREKTVTVICSL  223 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~---------~~~~v~~~A~~~L~~L  223 (560)
                      .....++..+..+....  +.+..|...+...+ .....+++.||+..|+.+|..         .+...+..++.++..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34556667776665443  55556665565544 567788889999999998863         2357888999999999


Q ss_pred             hcCCchHHHHH-hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 008585          224 AESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLS  265 (560)
Q Consensus       224 a~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La  265 (560)
                      ..+......++ ..+.+..|+..|.+.+..++..++.+|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98877555555 5689999999999999999999999998875

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=92.49  E-value=0.45  Score=52.64  Aligned_cols=146  Identities=20%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS  235 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~  235 (560)
                      ++.++...++.....|..-+..|..++..-|.....---....|.|++.|+-+|..+|..+..++..+....+.-..-.-
T Consensus       869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~  948 (1030)
T KOG1967|consen  869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL  948 (1030)
T ss_pred             HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH
Confidence            45556666655666677777888888876665322111224588888999999999999999999887665442211112


Q ss_pred             CCCHHHHHHhhhcCC---HHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585          236 EGVLPPLIRLVESGS---TVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (560)
Q Consensus       236 ~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (560)
                      ...+|.++.+=.+.+   ..+|+.|..||..|+. -|.+.-......+++.|+..|.++..-+|..|..+
T Consensus       949 ~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  949 STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            235677766655554   6799999999999988 46665555667778999999988877888777654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.47  E-value=11  Score=39.12  Aligned_cols=166  Identities=14%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHH
Q 008585          252 VGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKL  327 (560)
Q Consensus       252 ~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~l  327 (560)
                      +-+..|..-|..+ +......|.-.-...+..+++.|.+ .++..+..|+++|..++.+...+  +.+  +-++..+++.
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVLEA  379 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHHHH
Confidence            3344455544444 4444455542223445678888887 78889999999999998754322  222  3345555555


Q ss_pred             hhcCCchhHHHHH-HHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHH--hCCcH
Q 008585          328 LDCGILLGSKEYA-AECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLI--SLGFF  402 (560)
Q Consensus       328 L~~~~~~~v~~~a-~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~--~~~~i  402 (560)
                      -.+..+ ++...| =.|+.-++++.+..+        +..+..++.+  ...-..++..+..++..-..+.+.  -..+.
T Consensus       380 a~ds~~-~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia  450 (516)
T KOG2956|consen  380 AKDSQD-EVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA  450 (516)
T ss_pred             HhCCch-hHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence            555555 444444 445666666666543        3333444433  223344555666666533344442  35778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          403 PRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       403 ~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      |.+++.-++.+..|++.|+.+|..+.
T Consensus       451 P~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  451 PCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            89999999999999999999988876

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.43  E-value=3.1  Score=46.01  Aligned_cols=179  Identities=15%  Similarity=0.095  Sum_probs=114.1

Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcH
Q 008585          242 LIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIV  321 (560)
Q Consensus       242 Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v  321 (560)
                      .+..+.++...++.++...|.++....+.+..+...+++...++.+++.|+-+--.|...+..||..       .++..+
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il  804 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDIL  804 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhH
Confidence            3444556677789999999999988777777777889999999999999998888888877666642       334566


Q ss_pred             HHHHHH-hhcCCc--hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc--HHHHHHHHHHhhc-c--ccH
Q 008585          322 SVMIKL-LDCGIL--LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVG-S--VSQ  393 (560)
Q Consensus       322 ~~L~~l-L~~~~~--~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~--~~~a~~~L~nla~-~--~~~  393 (560)
                      |-+... .+....  .+.+-..-+++.+++..-.+...... .-.+...+..+++|+.  |..++..++++|. .  ...
T Consensus       805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs  883 (982)
T KOG4653|consen  805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS  883 (982)
T ss_pred             HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence            766663 332211  12333444666666542222111111 1234555666666654  8889999999997 2  112


Q ss_pred             HHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC
Q 008585          394 EVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       394 ~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~  430 (560)
                      +.+  ..+...++.+.+. +++-+++.|+..+..+-.+
T Consensus       884 d~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  884 DFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             HHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            221  1223444444443 5689999999999998765

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.21  E-value=0.88  Score=34.58  Aligned_cols=66  Identities=20%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhC
Q 008585          295 QAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE  361 (560)
Q Consensus       295 ~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~  361 (560)
                      .+.+++++.+++..+.....+.+.++++.++++.++.+...+|-.|..+|+-++...+. .+.+.+.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G-~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG-AEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH-HHHHHHc
Confidence            46899999999998888888888899999999999777668999999999999875443 4444443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=92.14  E-value=4.2  Score=45.83  Aligned_cols=184  Identities=11%  Similarity=0.103  Sum_probs=122.1

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHHHHHhC
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSE  236 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~  236 (560)
                      .+-..+.+.+...+.+|+..+...+.+.. ........|.+..++... ++.+..+...|+.+|..++..-..-..=...
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~  335 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK  335 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            44455667788889999999999987544 101111123344444443 3446778888999999998754311122234


Q ss_pred             CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc-hhHHH
Q 008585          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP-EVRQM  314 (560)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~-~~~~~  314 (560)
                      ++.+.++.-+++....++.....++.........-      ...+.+..++++++|.++..+...+..... .+ .+...
T Consensus       336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~------~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~  409 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLS------KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK  409 (815)
T ss_pred             hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHH------HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence            57899999999988889988888888776532222      234788899999999999887666655443 21 22222


Q ss_pred             HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      -.-.+.++.++....+.+. +||..+.+++..+..
T Consensus       410 ~t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  410 ETVKTLVPHLIKHINDTDK-DVRKAALEAVAAVMK  443 (815)
T ss_pred             hhHHHHhHHHhhhccCCcH-HHHHHHHHHHHHHHH
Confidence            2224577888888877776 899999998887765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.14  E-value=3.1  Score=43.65  Aligned_cols=193  Identities=12%  Similarity=0.119  Sum_probs=115.9

Q ss_pred             hHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585          155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      .+..++.... ..++..+..++..+..++..-+... .+ + ..+..+..-+ ...+...+..++.++..++..--.|..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL-D-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH-H-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            5666666654 4457778888888888886522110 00 0 1233333333 233355555565555554431100000


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhh--------HHHHHh----CCChHHHHHHhccCChHHHHHHH
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEM--------ARAIVG----HGGVRPLIEICQTGDSVSQAAAA  299 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~--------~~~l~~----~g~i~~Lv~ll~~~~~~~~~~a~  299 (560)
                      =.....+..|+.+|.+  +.+...++..+.-+..+ ++.        .+-+.+    ...+|.|++-.+..+...+..-.
T Consensus       267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL  344 (415)
T PF12460_consen  267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL  344 (415)
T ss_pred             chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence            0011246677777776  56778888888888766 332        112222    24567777777776666888888


Q ss_pred             HHHHHhcCCchhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585          300 CTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       300 ~aL~nLa~~~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                      .+|.++..+-...-.+.+ ...+|.+++-|..++. +++..++.+|..+...++.
T Consensus       345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~-~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA-DVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcCHH
Confidence            899998764332223333 5588999999988886 7999999999999987654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.96  E-value=10  Score=42.90  Aligned_cols=234  Identities=17%  Similarity=0.101  Sum_probs=125.3

Q ss_pred             CCHHHHHHhhhc--------CCHHHHHHHHHHHHHhhC---ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585          237 GVLPPLIRLVES--------GSTVGKEKATISLQRLSM---SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (560)
Q Consensus       237 g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~La~---~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (560)
                      |.++.++.++.+        .++.-++-|..++++|+.   .+..-....++-.+..++..++++..-+|..||+++...
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            355666666662        255556677777777753   111112233333445555666777778999999999999


Q ss_pred             cCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHh--CCCHHHHHHhccC---CccHHH
Q 008585          306 SAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS--EGGIRSLLAYLDG---PLPQES  379 (560)
Q Consensus       306 a~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~--~g~l~~L~~ll~~---~~~~~~  379 (560)
                      +.-+ .....+  ..++....+.+.++.+..|+..|+-+|..+..+.+...+.+..  .+.++.|+.+.+.   .+....
T Consensus       490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            8421 222222  2355666666664444589999999999999876654343332  3345556666543   222222


Q ss_pred             HHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhc---C---CHHHHHHHHHHHHHHhC---C----hhHHHHHHhcCCHH
Q 008585          380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA---G---SLGAQQAAASALCRVCT---S----AEMKKLVGEAGCTP  444 (560)
Q Consensus       380 a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~---~---~~~v~~~A~~aL~~La~---~----~~~~~~i~~~g~i~  444 (560)
                      .-..+..++.  .+....+. .+......+++..   .   +..-+..|...|..+..   +    ++.-+.+ +..+.+
T Consensus       568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l-e~~~l~  645 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL-EPIVLP  645 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHH
Confidence            2222333332  11111111 2334455555653   1   23344445555544432   1    2222222 223556


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhcCCChh
Q 008585          445 LLIKLLEAKPNSVREVAAQAISSLVTLPQN  474 (560)
Q Consensus       445 ~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~  474 (560)
                      .+-.+++..-.++-+.+.....++......
T Consensus       646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~  675 (1010)
T KOG1991|consen  646 VIGFILKNDITDFYEELLEIVSSLTFLSKE  675 (1010)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhhhhhcc
Confidence            666666666667777777777777644433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.87  E-value=5.3  Score=45.88  Aligned_cols=135  Identities=15%  Similarity=0.129  Sum_probs=99.9

Q ss_pred             cHHHHHHHhhc----CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc--c
Q 008585          320 IVSVMIKLLDC----GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG--S  390 (560)
Q Consensus       320 ~v~~L~~lL~~----~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~  390 (560)
                      ..|.+++..++    +++ +++..|.-+|+.+..-+...+..     -++.|+.++..   |.++-+++-+++-|+.  +
T Consensus       920 f~piv~e~c~n~~~~sdp-~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDP-ELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCH-HHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            34445555532    333 78999999999888755544432     37888888863   6678899999999887  3


Q ss_pred             ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ...     ...-+.|...|.+.++.|++.|..+|.+|--+    ..+.-.|.+..+...+.+++++++..|-.-...|+
T Consensus       994 nli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             ccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            222     33567888889999999999999999998743    23334689999999999999999999986666664

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=91.65  E-value=0.57  Score=41.78  Aligned_cols=111  Identities=12%  Similarity=0.234  Sum_probs=79.9

Q ss_pred             hchHHHHHHH-HccCCHHHHHHHHHHHHHHHhhChHHHHHHh-hCCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCc
Q 008585          153 HGNTRELLAR-LQIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLT--ATSPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       153 ~~~i~~Ll~~-L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~-~~g~v~~Lv~lL~--~~~~~v~~~A~~~L~~La~~~~  228 (560)
                      ...+.+.+.. +..++.+....+...+..+....++....+. .+|..+.++.+..  ..+..++..++++|..-+.+..
T Consensus        41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~  120 (157)
T PF11701_consen   41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS  120 (157)
T ss_dssp             HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH
Confidence            3334444433 3344445778888899888887777766665 5677889999998  6778888899998888887777


Q ss_pred             hHHHHHhCCCHHHHHHhhhc-CCHH-HHHHHHHHHHHh
Q 008585          229 CENWLVSEGVLPPLIRLVES-GSTV-GKEKATISLQRL  264 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~-~~~~-~~~~a~~~L~~L  264 (560)
                      +|..+.+. +++.|-+.++. .+.. ++..|+-+|.+|
T Consensus       121 ~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  121 CRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            77777665 58999999964 4555 788888888764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.45  E-value=0.94  Score=51.57  Aligned_cols=131  Identities=22%  Similarity=0.215  Sum_probs=100.5

Q ss_pred             cHHHHHHHHhc----CCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCChh
Q 008585          401 FFPRLVHVLKA----GSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQN  474 (560)
Q Consensus       401 ~i~~Lv~lL~~----~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~~~~~~  474 (560)
                      +.|.++...++    ++|++|..|.-+|++|.+ +.+++..     -+|.|+..+. ++++.+|..+..+++.++..-+|
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            55666666643    569999999999999864 4555433     2888999997 88999999999999999976666


Q ss_pred             hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHHH
Q 008585          475 CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLE  546 (560)
Q Consensus       475 ~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~  546 (560)
                      .-+     .+.+.|...|.+.+ ..+++.|+..+.+|-    ...+|.-.|.+........-++++.+.+++
T Consensus       995 lie-----~~T~~Ly~rL~D~~-~~vRkta~lvlshLI----LndmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen  995 LIE-----PWTEHLYRRLRDES-PSVRKTALLVLSHLI----LNDMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred             ccc-----hhhHHHHHHhcCcc-HHHHHHHHHHHHHHH----HhhhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence            443     44588998898864 358999999998884    344566678888888888888888777777

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=91.31  E-value=1.1  Score=34.09  Aligned_cols=66  Identities=17%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 008585          254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEG  319 (560)
Q Consensus       254 ~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g  319 (560)
                      ...+.|++.+++..+.....+-+++.++.++++... +...+|..+..+|.-++...+.++.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            457899999999888887777788999999999874 677899999999999999888888777654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.31  E-value=5.8  Score=44.10  Aligned_cols=293  Identities=15%  Similarity=0.123  Sum_probs=154.3

Q ss_pred             HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh----cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC
Q 008585          215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVE----SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG  290 (560)
Q Consensus       215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~  290 (560)
                      ..+.+|.-|.+..+.-..+.+.|. ..++-++.    ..+..+.-.+...|+.|+.+...+..|+++||+..|+.+=+- 
T Consensus       328 ~~~q~l~~lgey~e~lpv~~~~g~-~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~-  405 (1516)
T KOG1832|consen  328 YCIQCLEILGEYVEVLPVLHEKGV-DVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRV-  405 (1516)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHhCc-hhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCc-
Confidence            355666666665555555555553 33333332    224445566788888998888889999999999977665432 


Q ss_pred             ChHHHHHHHHHHHHhcCCchhHHHHHh------cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585          291 DSVSQAAAACTLKNISAVPEVRQMLAE------EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI  364 (560)
Q Consensus       291 ~~~~~~~a~~aL~nLa~~~~~~~~i~e------~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l  364 (560)
                       .+.-.-.-.+|+.+..+.+.-+.+..      ..++..-+.+++...+ ..+.++......... ....-+.+-...++
T Consensus       406 -s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~-~~~~~~~~ff~~~f~-frail~~fd~~d~l  482 (1516)
T KOG1832|consen  406 -SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQD-QARKNSALFFAAAFV-FRAILDAFDAQDSL  482 (1516)
T ss_pred             -hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchh-hccchHHHHHHHHHH-HHHHHHHHhhhhHH
Confidence             11112223455555554444333322      3455556666766554 455555444332211 11112222234567


Q ss_pred             HHHHHhccC-------------Ccc--------HHHHHHHHHHhhc-------cccHHHHHhCCcHHHHHHHHhcCC---
Q 008585          365 RSLLAYLDG-------------PLP--------QESAVGALRNLVG-------SVSQEVLISLGFFPRLVHVLKAGS---  413 (560)
Q Consensus       365 ~~L~~ll~~-------------~~~--------~~~a~~~L~nla~-------~~~~~~l~~~~~i~~Lv~lL~~~~---  413 (560)
                      +.|+.++.+             ++.        -...+.+|+..-.       ...++.-.+.+..+..+.-+..++   
T Consensus       483 ~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~  562 (1516)
T KOG1832|consen  483 QKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPL  562 (1516)
T ss_pred             HHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcc
Confidence            777777643             111        1244555554433       112223334455555555444332   


Q ss_pred             ---HHHHHHHHHHHHHHhCC-h-------hHHHHHHhcCCHHHHHHHHc--------cCCHHHHHHHHHHHHHhcCCChh
Q 008585          414 ---LGAQQAAASALCRVCTS-A-------EMKKLVGEAGCTPLLIKLLE--------AKPNSVREVAAQAISSLVTLPQN  474 (560)
Q Consensus       414 ---~~v~~~A~~aL~~La~~-~-------~~~~~i~~~g~i~~Lv~ll~--------s~~~~v~~~A~~aL~~L~~~~~~  474 (560)
                         ....+..++-+-.+... +       .....+...+++..++++..        +.-.++...|..+|+.+..-+..
T Consensus       563 ~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~i  642 (1516)
T KOG1832|consen  563 DISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDI  642 (1516)
T ss_pred             hhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchH
Confidence               12223333333332211 2       12344555677888888875        23345667889999888888877


Q ss_pred             hHHHhhh-------CCChHHHHhccCCC--C-chhhHHHHHHHHHHhC
Q 008585          475 CREVKRD-------DKSVPNLVQLLDPS--P-QNTAKKYAVACLASLS  512 (560)
Q Consensus       475 ~~~~~~~-------~~~v~~Lv~lL~~~--~-~~~~~~~a~~~L~~L~  512 (560)
                      +..+...       ..++..+++.-...  . ++++++.|+.++.++.
T Consensus       643 q~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincV  690 (1516)
T KOG1832|consen  643 QKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCV  690 (1516)
T ss_pred             HHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheee
Confidence            7666542       12444444433332  1 3457888888887765

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.25  E-value=7.1  Score=44.91  Aligned_cols=213  Identities=18%  Similarity=0.127  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHHHHHhhCChhhHHHHHh--CCChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHH
Q 008585          249 GSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVM  324 (560)
Q Consensus       249 ~~~~~~~~a~~~L~~La~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L  324 (560)
                      .+..+|..+-++|..++..+.......+  ......|.+-.++.+...+...+.+|..|-.  +.+.+..+..  .|+-+
T Consensus       666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~Ev  743 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEV  743 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHH
Confidence            3677888999999999776433222211  1222334444444455666666767666643  2244444433  34444


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCC------CHHHHHHhcc----CCccHHHH--HHHHHHhhc--c
Q 008585          325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG------GIRSLLAYLD----GPLPQESA--VGALRNLVG--S  390 (560)
Q Consensus       325 ~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g------~l~~L~~ll~----~~~~~~~a--~~~L~nla~--~  390 (560)
                      +-.++..+. ..+.++..+|.+|+..     +...+.|      .+...+..+.    +...+..+  +-++..+..  .
T Consensus       744 IL~~Ke~n~-~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~  817 (1176)
T KOG1248|consen  744 ILSLKEVNV-KARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK  817 (1176)
T ss_pred             HHhcccccH-HHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence            444455554 7899999999999830     1111111      3444444442    22333222  333333333  1


Q ss_pred             ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      .....-.-.+++..+.-+|.++++++...|...+..++.. |+..-.-.....++.+..+.+.....+|......|-.|.
T Consensus       818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI  897 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            1111111234566666677889999999999999998855 554444434456888888888877788888777777776

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.40  E-value=7.8  Score=43.97  Aligned_cols=271  Identities=17%  Similarity=0.150  Sum_probs=153.2

Q ss_pred             HHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-----
Q 008585          175 LDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-----  249 (560)
Q Consensus       175 ~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-----  249 (560)
                      -+.|..+++.+.+|.+.+.+..|+..++.++-+  .+-|..-++++..|-..++..   +...-+-.+++.|+++     
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence            467888899999999999999999888888733  345555666666665544310   0111255677777764     


Q ss_pred             ---C----HHHHHHHHHHHHHhh-CChhhHHHHHhCCChHHHHHHhccC----------ChHHHHHHHHHH---HH--hc
Q 008585          250 ---S----TVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTG----------DSVSQAAAACTL---KN--IS  306 (560)
Q Consensus       250 ---~----~~~~~~a~~~L~~La-~~~~~~~~l~~~g~i~~Lv~ll~~~----------~~~~~~~a~~aL---~n--La  306 (560)
                         +    .........+++++- .+...+..+.+.+|...|...|..-          |.-+-..-...|   ..  ++
T Consensus       738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc  817 (2799)
T KOG1788|consen  738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC  817 (2799)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence               1    122334455666664 3456677888999999888877421          100101111111   11  23


Q ss_pred             CCchhHHHHHhcCcHHHHHHHhhcCCch--hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc--HHHHHH
Q 008585          307 AVPEVRQMLAEEGIVSVMIKLLDCGILL--GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVG  382 (560)
Q Consensus       307 ~~~~~~~~i~e~g~v~~L~~lL~~~~~~--~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~--~~~a~~  382 (560)
                      .++.|+.++...-.-+.+..+|....-.  ..-......|.+++.                   +.+..|..  ...|+.
T Consensus       818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElal-------------------evlvppfLtSEsaAca  878 (2799)
T KOG1788|consen  818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELAL-------------------EVLVPPFLTSESAACA  878 (2799)
T ss_pred             hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHH-------------------HhhCCchhhhhHHHHH
Confidence            4556666665544445555555432200  111112222222221                   00111111  011111


Q ss_pred             HHHHhh---------c---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHH
Q 008585          383 ALRNLV---------G---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKL  449 (560)
Q Consensus       383 ~L~nla---------~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~l  449 (560)
                      -+-.+-         .   .+..+.+...|++..+++.+-...+..|.+-...+..+++. +.+....-..|+++.|+++
T Consensus       879 eVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleI  958 (2799)
T KOG1788|consen  879 EVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEI  958 (2799)
T ss_pred             HHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHH
Confidence            111110         0   23456778899999999998888999999999999999865 6677777777999999988


Q ss_pred             Hc---cCCHHHHHHHHHHHHHhc
Q 008585          450 LE---AKPNSVREVAAQAISSLV  469 (560)
Q Consensus       450 l~---s~~~~v~~~A~~aL~~L~  469 (560)
                      +.   +++...-..+...+..|+
T Consensus       959 iypflsgsspfLshalkIvemLg  981 (2799)
T KOG1788|consen  959 IYPFLSGSSPFLSHALKIVEMLG  981 (2799)
T ss_pred             hhhhhcCCchHhhccHHHHHHHh
Confidence            86   344444444444444444

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=89.73  E-value=3.2  Score=38.00  Aligned_cols=108  Identities=11%  Similarity=0.058  Sum_probs=75.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--chHHHHHhCCCHHHHHHhhhc---------CCHHHHHHHHHHHHHhh
Q 008585          197 NIAALVQLLTATSPRIREKTVTVICSLAESG--SCENWLVSEGVLPPLIRLVES---------GSTVGKEKATISLQRLS  265 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~~~l~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~La  265 (560)
                      ....+++.+.......  ..+.-|...-+..  .....+++.||+..|+++|..         .+......+..|+..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4556777776654322  2222222222222  356677788999999998864         24577888999999999


Q ss_pred             CChhhHHHHHh-CCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585          266 MSAEMARAIVG-HGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (560)
Q Consensus       266 ~~~~~~~~l~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (560)
                      .+......+.. .+++..++..+.++++.++..++..|..+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            88877776665 788999999999999999999999998765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.64  E-value=5.8  Score=46.77  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=90.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHH
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAI  274 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l  274 (560)
                      +.+..++..|..+.+.+|-.|+++|..+.+.++.  .+....+-..+-.=+.+.+..+|+.|...+++... +++...++
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy  893 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY  893 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence            3577788888888899999999999999987761  11111222334444667788999999999998744 46665555


Q ss_pred             HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh---cCCchhHHHHHHHHHHHHcc
Q 008585          275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~---~~~~~~v~~~a~~~L~~La~  349 (560)
                      .     ..+.+-..+....+|..+...++.+|...+.-..     .+..+++++.   ++++ .++..+..++.++..
T Consensus       894 Y-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-----i~~~cakmlrRv~DEEg-~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  894 Y-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSK-----IVDMCAKMLRRVNDEEG-NIKKLVRETFLKLWF  960 (1692)
T ss_pred             H-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-----HHHHHHHHHHHhccchh-HHHHHHHHHHHHHhc
Confidence            4     4555556667788899999999988852221111     2233334333   2221 366666666666654

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=89.63  E-value=14  Score=37.68  Aligned_cols=154  Identities=11%  Similarity=0.125  Sum_probs=91.8

Q ss_pred             hchHHHHHHHHccCCH-HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc--C--------CCHHHHHHHHHHHH
Q 008585          153 HGNTRELLARLQIGHL-EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT--A--------TSPRIREKTVTVIC  221 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~-~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~--~--------~~~~v~~~A~~~L~  221 (560)
                      ......++..|..|-+ .-+..++.++.-|..+.. .-..+.....++.|+.+-+  +        .+..+...+.++|+
T Consensus        44 ~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLc  122 (532)
T KOG4464|consen   44 KELGERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLC  122 (532)
T ss_pred             HHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHH
Confidence            3344456677777764 446667777766654322 1111112223444444422  1        12578889999999


Q ss_pred             HHhcCCc-hHHHHHhCCCHHHHHHhhhcC-----CHHHHHHHHHHHHHhhC-ChhhHH-HHHhCCChHHHHHHhccC---
Q 008585          222 SLAESGS-CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSM-SAEMAR-AIVGHGGVRPLIEICQTG---  290 (560)
Q Consensus       222 ~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~La~-~~~~~~-~l~~~g~i~~Lv~ll~~~---  290 (560)
                      |+..+++ .+....+......+++.+...     ...+...-.+.|.-++. ..+.+. .+...+|++.+...+.+.   
T Consensus       123 Nlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgi  202 (532)
T KOG4464|consen  123 NLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGI  202 (532)
T ss_pred             HHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccC
Confidence            9999887 677777777777777655432     22344455566666643 445554 456789999999998652   


Q ss_pred             C------h------HHHHHHHHHHHHhcC
Q 008585          291 D------S------VSQAAAACTLKNISA  307 (560)
Q Consensus       291 ~------~------~~~~~a~~aL~nLa~  307 (560)
                      +      |      +.-..++.++.|++.
T Consensus       203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  203 DSEINVPPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence            1      1      123456777778864

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.58  E-value=3.5  Score=40.29  Aligned_cols=143  Identities=17%  Similarity=0.193  Sum_probs=100.7

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      ...+...+..|.+.+.+.+.+++..+..|+..+++....... ..+-.+++-+++....+-..|+.++..+...-..  .
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~  163 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S  163 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence            445777888899999999999999999998776654433322 3466677777888888888999999888765431  2


Q ss_pred             HHhCCCHHHHHH-hhhc---CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585          233 LVSEGVLPPLIR-LVES---GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (560)
Q Consensus       233 l~~~g~i~~Lv~-lL~~---~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (560)
                      +.+  -+..++. ++..   ++..+++.|-.+|..+..+......+      +.|+..++..++.++..++..+.+.-
T Consensus       164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L------~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLL------RKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHH------HHHHHHHhhhchhhhhhhhccccccc
Confidence            222  2444443 3333   36778999999999997764444433      67777788888998888877665543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.37  E-value=39  Score=37.45  Aligned_cols=65  Identities=15%  Similarity=0.111  Sum_probs=41.9

Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          442 CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       442 ~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      .+..+...+.-.+..+|..|..+|..+....+....     .....|.+.+.+. +++++..|-..+.++-
T Consensus       467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence            344445555556788999999999999744443332     2235566667765 3457777777777665

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=88.67  E-value=1.6  Score=48.54  Aligned_cols=186  Identities=16%  Similarity=0.154  Sum_probs=114.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--------------hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGS--------------CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR  263 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--------------~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  263 (560)
                      ...++.+|+.+  ++-..++.++.-+..+.+              +|+.+.. .++|.+++..++.+...+..=..+|.+
T Consensus       817 a~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~-~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC-DIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH-hhHHHHHHHhccCCccchhHHHHHHHH
Confidence            44566666653  344455555555554432              2222222 468888888886666777777777877


Q ss_pred             hhCChhhHHHHHh-CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCc--hhHHHHH
Q 008585          264 LSMSAEMARAIVG-HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL--LGSKEYA  340 (560)
Q Consensus       264 La~~~~~~~~l~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~--~~v~~~a  340 (560)
                      .-.+-+....+-+ ...+|.|++.|.-+|+.+|..+..++.-+..-.+.-..-.-.-.+|.++.+=.+.+.  ..+|+.|
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A  973 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA  973 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence            7554333221111 345678888888899999999988887665321111111113467777766554442  4789999


Q ss_pred             HHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC--ccHHHHHHHHHH
Q 008585          341 AECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRN  386 (560)
Q Consensus       341 ~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~~~a~~~L~n  386 (560)
                      +.||..|+..-|...-.-.+..++..|...|+++  .+|..|+.+=.+
T Consensus       974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            9999999985454333344556788888888884  467777765433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.20  E-value=5.7  Score=44.44  Aligned_cols=178  Identities=13%  Similarity=0.090  Sum_probs=111.1

Q ss_pred             HHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHH--HHHHhhhcCCH-H
Q 008585          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLP--PLIRLVESGST-V  252 (560)
Q Consensus       177 ~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~--~Lv~lL~~~~~-~  252 (560)
                      .+.....+++++.+.+++.||+..+...++.. +.+++..++..+.+++...+.+.......-+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            67788888999999999999999999999865 47889999999999998776544433222222  33334444343 6


Q ss_pred             HHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh-cCCchhHHHHHhcCcHHH-HHHHhhc
Q 008585          253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI-SAVPEVRQMLAEEGIVSV-MIKLLDC  330 (560)
Q Consensus       253 ~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL-a~~~~~~~~i~e~g~v~~-L~~lL~~  330 (560)
                      .-..++.+|..+..+.+.   ....+               .+..+...+... ...+.....+.-...+.. +..++..
T Consensus       574 rsY~~~siLa~ll~~~~~---~~~~~---------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEK---TTECV---------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL  635 (699)
T ss_pred             HHHHHHHHHHHHHhCCCc---Ccccc---------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence            667788888887654332   00001               111111111111 111111111111112222 5555554


Q ss_pred             CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585          331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD  372 (560)
Q Consensus       331 ~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~  372 (560)
                      ......+.+|++++.++...++.+.+.+.+.|+++.+...-.
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV  677 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence            443478999999999999988888888888998887776653

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=88.00  E-value=23  Score=38.19  Aligned_cols=129  Identities=19%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHHHHHh
Q 008585          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVS  235 (560)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~  235 (560)
                      ..++... .|+..++.-|+.-+..+.+.-|....     ..+..++.|+.+.+..+|..|++.|-.++.+. +....   
T Consensus        26 ~~il~~~-kg~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---   96 (556)
T PF05918_consen   26 KEILDGV-KGSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---   96 (556)
T ss_dssp             HHHHHGG-GS-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred             HHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence            3344433 36788888888888888877665432     46788999999999999999999999999875 34444   


Q ss_pred             CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc---cCChHHHHHHHHHHH
Q 008585          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLK  303 (560)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~  303 (560)
                        +.+.|+++|.++++.-...+-.+|..|-..+ .+..      +..++..+.   +++..+|..+..-|.
T Consensus        97 --vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~k~t------L~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   97 --VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-PKGT------LTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             --HHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHH------HHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-cHHH------HHHHHHHHHhcccCchHHHHHHHHHHH
Confidence              4788999999998877777777777764321 1111      244444544   467777777766553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=87.93  E-value=6.4  Score=44.46  Aligned_cols=177  Identities=17%  Similarity=0.138  Sum_probs=117.0

Q ss_pred             HHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585          285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI  364 (560)
Q Consensus       285 ~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l  364 (560)
                      .-+.+.++.-|..|+..+......+.........|.+..+++....+....+...++.+|..|+....... .-+..+..
T Consensus       260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~~v~  338 (815)
T KOG1820|consen  260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAKNVF  338 (815)
T ss_pred             HhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHHhhc
Confidence            33445678888889988888776444001111134455555554444334788889999999987543321 11234567


Q ss_pred             HHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-h---hHHHHHH
Q 008585          365 RSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A---EMKKLVG  438 (560)
Q Consensus       365 ~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~---~~~~~i~  438 (560)
                      +.++..+.+  +.+++....++..++....     ....++.+..+++++++..+..+...+...... .   ..+..+ 
T Consensus       339 p~lld~lkekk~~l~d~l~~~~d~~~ns~~-----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~-  412 (815)
T KOG1820|consen  339 PSLLDRLKEKKSELRDALLKALDAILNSTP-----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV-  412 (815)
T ss_pred             chHHHHhhhccHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH-
Confidence            777777754  5566666666666554111     234577888899999999999988777776543 2   223333 


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       439 ~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                       .+.+|.++....+.+.+||..|.+++.-+.
T Consensus       413 -~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  413 -KTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             -HHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence             467899999998999999999999999886

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=87.75  E-value=13  Score=41.35  Aligned_cols=168  Identities=21%  Similarity=0.237  Sum_probs=94.1

Q ss_pred             CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC------CccHHHHHHHHHHhhcc--
Q 008585          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVGS--  390 (560)
Q Consensus       319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~~a~~~L~nla~~--  390 (560)
                      .++..+.+++.++..  .-..+...|..+......--..+     +..+..++..      +.++..|+-+++++...  
T Consensus       395 ~av~~i~~~I~~~~~--~~~ea~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c  467 (618)
T PF01347_consen  395 PAVKFIKDLIKSKKL--TDDEAAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC  467 (618)
T ss_dssp             HHHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC--CHHHHHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence            467778888877553  23335555555544221111112     4555555543      34566777777777761  


Q ss_pred             cc---------HHHHHhCCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC---C
Q 008585          391 VS---------QEVLISLGFFPRLVHVLK----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK---P  454 (560)
Q Consensus       391 ~~---------~~~l~~~~~i~~Lv~lL~----~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~---~  454 (560)
                      ..         ........+++.+...+.    .++..-+..++.+|+|+...          ..++.|...+...   +
T Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-
T ss_pred             ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccc
Confidence            11         111223445667766665    35678889999999999742          3577777777655   5


Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHh
Q 008585          455 NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASL  511 (560)
Q Consensus       455 ~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L  511 (560)
                      ..+|..|+++|..++...++.   +     .+.+++++.+. .+.++|-.|+.++...
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~---v-----~~~l~~I~~n~~e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEK---V-----REILLPIFMNTTEDPEVRIAAYLILMRC  587 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHH---H-----HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhhcCcHH---H-----HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence            678999999999885433321   1     25555555443 4445777777666554

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=87.69  E-value=6.2  Score=41.95  Aligned_cols=127  Identities=16%  Similarity=0.169  Sum_probs=83.1

Q ss_pred             CCccHHHHHHHHHHhhc---cccHH--HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHH
Q 008585          373 GPLPQESAVGALRNLVG---SVSQE--VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLI  447 (560)
Q Consensus       373 ~~~~~~~a~~~L~nla~---~~~~~--~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv  447 (560)
                      ++..-...+.++..+..   +..++  .+ -.|++.++++-+.+.+..|+..++..|..+.....--....-.|.+..|.
T Consensus        60 ~~si~dRil~fl~~f~~Y~~~~dpeg~~~-V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~  138 (885)
T COG5218          60 NPSIPDRILSFLKRFFEYDMPDDPEGEEL-VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLS  138 (885)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCChhhhHH-HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            35555555555555543   22222  22 24566777777778899999999999999875422222223357788888


Q ss_pred             HHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHH
Q 008585          448 KLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV  505 (560)
Q Consensus       448 ~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~  505 (560)
                      +-+....+.||..|..+|+++-....|-+..+     +..|+.+++..|.++++..++
T Consensus       139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~-----~n~l~~~vqnDPS~EVRr~al  191 (885)
T COG5218         139 ERLFDREKAVRREAVKVLCYYQEMELNEENRI-----VNLLKDIVQNDPSDEVRRLAL  191 (885)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHhccCChHHHH-----HHHHHHHHhcCcHHHHHHHHH
Confidence            88888889999999999999975554444333     356667777666666776554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.41  E-value=0.95  Score=42.60  Aligned_cols=80  Identities=21%  Similarity=0.325  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHh-------cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-hCCCHH
Q 008585          294 SQAAAACTLKNISAVPEVRQMLAE-------EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV-SEGGIR  365 (560)
Q Consensus       294 ~~~~a~~aL~nLa~~~~~~~~i~e-------~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~-~~g~l~  365 (560)
                      -|+.|+.+|+.|+..+.|-..+..       +..+..|+.++....+.-.|+.|+..|.+++..++.....+. +.+.+.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            478999999999987766655544       345667777777666557899999999999998877665554 677888


Q ss_pred             HHHHhccC
Q 008585          366 SLLAYLDG  373 (560)
Q Consensus       366 ~L~~ll~~  373 (560)
                      .|+.++++
T Consensus       220 ~Li~FiE~  227 (257)
T PF12031_consen  220 HLIAFIED  227 (257)
T ss_pred             HHHHHHHH
Confidence            88888865

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=87.33  E-value=3.4  Score=36.92  Aligned_cols=142  Identities=14%  Similarity=0.189  Sum_probs=79.6

Q ss_pred             CHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585          197 NIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (560)
Q Consensus       197 ~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~  275 (560)
                      .++.|+++|+.+ +..+|.+++++|+.|+.-++++.+.+..+.-..-   -.+.+.....   ..+.+... ....+.+.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~---~~l~~~~~-~~~~ee~y   83 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTD---ISLPMMGI-SPSSEEYY   83 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchh---hHHhhccC-CCchHHHH
Confidence            456778888766 4999999999999998887766654333211000   0000111111   11111111 11222333


Q ss_pred             hCCChHHHHHHhccCChHH-HHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585          276 GHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (560)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~-~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La  348 (560)
                      -..++..|+.++++++-.. ...+..++.++....  .+...+  ..++|.++..+++.++ ..++.-..-|+.|.
T Consensus        84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~-~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPD-SLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence            3345688888888754332 345666776665322  232222  3478999999987776 77777666665553

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=87.19  E-value=32  Score=33.91  Aligned_cols=200  Identities=14%  Similarity=0.136  Sum_probs=129.2

Q ss_pred             HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hhHHHHHh--cCcHHHHHHHhhcCC-chhHHHHHHHHHHHH
Q 008585          272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNL  347 (560)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e--~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~L  347 (560)
                      ..+.+.|.++.|+..+...+-+.+..+.....|+-... +.+...++  ..-...+..++.... ..++--.+-..|.+.
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc  152 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC  152 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            45778899999999999988999999998888885421 22222111  111222333333222 124555555555555


Q ss_pred             ccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhhc-c-ccHHHHHhCC----cHHHHHHHHhcCCHHHHHH
Q 008585          348 TASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG-S-VSQEVLISLG----FFPRLVHVLKAGSLGAQQA  419 (560)
Q Consensus       348 a~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla~-~-~~~~~l~~~~----~i~~Lv~lL~~~~~~v~~~  419 (560)
                      .. .+.+.+.+..+.-......+++.|.  +..-|......+.. . ....++...+    +.+.--.++++++.-+++.
T Consensus       153 ir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  153 IR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             Hh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            55 3666777778888888888876643  34444444444443 1 2222332222    2444667888999999999


Q ss_pred             HHHHHHHHhCCh----hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585          420 AASALCRVCTSA----EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (560)
Q Consensus       420 A~~aL~~La~~~----~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~  472 (560)
                      +...++.+--+.    ...+++.+..-++.++.+|+.++..+|..|-....-...++
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            999999987542    33455544466899999999999999999999988887543

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=86.59  E-value=57  Score=36.12  Aligned_cols=302  Identities=14%  Similarity=0.135  Sum_probs=159.6

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--------CHHHHHHHHHHHHHHhc
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--------SPRIREKTVTVICSLAE  225 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--------~~~v~~~A~~~L~~La~  225 (560)
                      .++++-+..-..|..... .|+..+.......++.  .+  .|.++.++..|...        ++.-.+.|++.+.++..
T Consensus       371 eyirry~df~d~g~spdl-aal~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s  445 (970)
T COG5656         371 EYIRRYYDFFDNGLSPDL-AALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS  445 (970)
T ss_pred             HHHHHhcchhcCCCChhH-HHHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence            345555555455543332 3444444443333322  11  37888999988321        24445667777777755


Q ss_pred             ---CCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585          226 ---SGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (560)
Q Consensus       226 ---~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (560)
                         .++....+.+.=+++.++..+++.....+.++|..+..+..+ +++....   .+.+.....+++.+-.++..|+-|
T Consensus       446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill---~aye~t~ncl~nn~lpv~ieAalA  522 (970)
T COG5656         446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILL---EAYENTHNCLKNNHLPVMIEAALA  522 (970)
T ss_pred             HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHH---HHHHHHHHHHhcCCcchhhhHHHH
Confidence               222333444444677777788999999999999999999665 3433222   223455566777777888889999


Q ss_pred             HHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC-ChhHHHHHHh--CCCHHHHHHhc----c
Q 008585          302 LKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS-NENLRRSVVS--EGGIRSLLAYL----D  372 (560)
Q Consensus       302 L~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~-~~~~~~~i~~--~g~l~~L~~ll----~  372 (560)
                      +.-+-.+++....+.+  .+.++.++.+-+.-+- ++...+.   ..+... .++......+  ...+++.+++.    +
T Consensus       523 lq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei-D~LS~vM---e~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~e  598 (970)
T COG5656         523 LQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI-DPLSMVM---ESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLE  598 (970)
T ss_pred             HHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc-hHHHHHH---HHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHc
Confidence            9888777666666655  2333444433333222 2222222   222221 1111111111  11233333332    2


Q ss_pred             C--------CccHHHHHHHHHHhhc----cccHHHH---HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHH
Q 008585          373 G--------PLPQESAVGALRNLVG----SVSQEVL---ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKL  436 (560)
Q Consensus       373 ~--------~~~~~~a~~~L~nla~----~~~~~~l---~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~  436 (560)
                      +        .+-+..|.+.|..+..    -++...+   .+....|.+--.|++.-...-++|+..+-+.... .+.-..
T Consensus       599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi  678 (970)
T COG5656         599 NSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI  678 (970)
T ss_pred             CCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh
Confidence            2        2346678888887765    1222222   2334445555556666677778888877766532 222122


Q ss_pred             HHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhc
Q 008585          437 VGEAGCTPLLIKLLEAKPN-SVREVAAQAISSLV  469 (560)
Q Consensus       437 i~~~g~i~~Lv~ll~s~~~-~v~~~A~~aL~~L~  469 (560)
                      +  =|..+.+.+++.+... .--+.+..++.++.
T Consensus       679 m--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfi  710 (970)
T COG5656         679 M--WGIFELLLNLLIDEITAVYSEEVADALDNFI  710 (970)
T ss_pred             h--hHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence            2  1334444444444332 34466777777776

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=86.53  E-value=39  Score=34.16  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=110.6

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHh-hChHHHHHHhhC-CC-HHHHHHhhcCCC-------------HHHHHHHHHH
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMK-EDEKNVLAVMGR-SN-IAALVQLLTATS-------------PRIREKTVTV  219 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~-~~~~~~~~i~~~-g~-v~~Lv~lL~~~~-------------~~v~~~A~~~  219 (560)
                      .+.+...|.+........++.-|.++.. ++....+.+... +. .+.+.+++....             +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            5566666777777777788888888887 666666666643 33 556777764321             1788888887


Q ss_pred             HHHHhcCCc--hHHHH-HhCCCHHHHHHhhhcCCHHHHHHHHHHHHH-hhCCh----hhHHHHHhCCChHHHHHHhccCC
Q 008585          220 ICSLAESGS--CENWL-VSEGVLPPLIRLVESGSTVGKEKATISLQR-LSMSA----EMARAIVGHGGVRPLIEICQTGD  291 (560)
Q Consensus       220 L~~La~~~~--~~~~l-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-La~~~----~~~~~l~~~g~i~~Lv~ll~~~~  291 (560)
                      +..+-...+  .+..+ -+.+.+..+.+-|..+++++......+|.. +..++    ..+..+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            777766443  44444 456688999999999999998888888875 43333    33556777788888999887766


Q ss_pred             h----HHHHHHHHHHHHhcCCch
Q 008585          292 S----VSQAAAACTLKNISAVPE  310 (560)
Q Consensus       292 ~----~~~~~a~~aL~nLa~~~~  310 (560)
                      +    .+...+-..|..+|.+++
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCC
Confidence            6    788888888888886553

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.38  E-value=47  Score=34.91  Aligned_cols=150  Identities=15%  Similarity=0.091  Sum_probs=86.2

Q ss_pred             CCCHHHHHHhh----hcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHH-HHhccCChHHHHHHHHHHHHhcC--
Q 008585          236 EGVLPPLIRLV----ESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA--  307 (560)
Q Consensus       236 ~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~--  307 (560)
                      .|.+..++..+    .+++...+..|+.+|.+.+.. |+........ .+..++ .++...+.+++..+..+|..+..  
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            34555544443    455778999999999999876 5444333221 223333 44455667888888888877653  


Q ss_pred             -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-h--CCCHHHHHHhccCCcc-HHHHHH
Q 008585          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV-S--EGGIRSLLAYLDGPLP-QESAVG  382 (560)
Q Consensus       308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~-~--~g~l~~L~~ll~~~~~-~~~a~~  382 (560)
                       +.+....+.+  +.-.+..+.++.++ +++.++...++.|+.-...-.+..+ +  .+...+++--|.++.+ ...|++
T Consensus       332 ~~~~l~~~~l~--ialrlR~l~~se~~-~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr  408 (533)
T KOG2032|consen  332 SNDDLESYLLN--IALRLRTLFDSEDD-KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR  408 (533)
T ss_pred             hhcchhhhchh--HHHHHHHHHHhcCh-hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence             2233333332  44456667777776 8999998888888762222122222 1  1222333333444433 456777


Q ss_pred             HHHHhhc
Q 008585          383 ALRNLVG  389 (560)
Q Consensus       383 ~L~nla~  389 (560)
                      .....|.
T Consensus       409 ~~~~~c~  415 (533)
T KOG2032|consen  409 SELRTCY  415 (533)
T ss_pred             HHHHhcC
Confidence            7776665

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=85.57  E-value=11  Score=33.75  Aligned_cols=144  Identities=17%  Similarity=0.193  Sum_probs=85.3

Q ss_pred             CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHh
Q 008585          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLIS  398 (560)
Q Consensus       319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~  398 (560)
                      ..++.|+.+++++....+|..++.+|+.|..-++...+.+....-  .-...-.+.......   +.+.......++..-
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~~~~~~~~~~~~~---l~~~~~~~~~ee~y~   84 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKSSENSNDESTDIS---LPMMGISPSSEEYYP   84 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccccccccccchhhH---HhhccCCCchHHHHH
Confidence            467888899988766689999999999999877764442222111  000000001111111   111111223445555


Q ss_pred             CCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          399 LGFFPRLVHVLKAGS-LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       399 ~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ..++..|+..|++.+ ..-...+..++.++..+  ......+  ...+|.+++.+...+...++.-..-|+.|.
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            567888889888765 34444566676666533  2333333  346899999998777788888777777664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.06  E-value=26  Score=40.14  Aligned_cols=278  Identities=17%  Similarity=0.195  Sum_probs=162.0

Q ss_pred             HccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC---CchHHHHHhCCCH
Q 008585          163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES---GSCENWLVSEGVL  239 (560)
Q Consensus       163 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~---~~~~~~l~~~g~i  239 (560)
                      |+..+.+.+.+.++.+..+-..+++|-...-+.--++.++--+......+|..-+++|-.-...   -+.++       +
T Consensus       476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqE-------L  548 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQE-------L  548 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHH-------H
Confidence            3567777888889999999888888876666666688887777665556665555544322211   11222       2


Q ss_pred             HHHHHhhhcC-CHHHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhccC----ChHHHHHHHHHHH--HhcCCchh
Q 008585          240 PPLIRLVESG-STVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTG----DSVSQAAAACTLK--NISAVPEV  311 (560)
Q Consensus       240 ~~Lv~lL~~~-~~~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~~----~~~~~~~a~~aL~--nLa~~~~~  311 (560)
                      -.|.-+|+.+ +...+........+| +.+...+..+.+-|.++.|...++..    .|+ +.....--+  |. .++..
T Consensus       549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qysgvsehydrnp-ss~sf  626 (2799)
T KOG1788|consen  549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYSGVSEHYDRNP-SSPSF  626 (2799)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhhhHHHHhhcCC-CCchh
Confidence            2344455554 333333334444444 55677788888999999998877641    111 111111110  11 12233


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCch-hHHH------HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHH
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILL-GSKE------YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL  384 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~-~v~~------~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L  384 (560)
                      ++.+-...++-.--++.+++... .+.+      ....||..|...+.++...+.+..|+..++.++-+..-+...++.+
T Consensus       627 ~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLriv  706 (2799)
T KOG1788|consen  627 KQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIV  706 (2799)
T ss_pred             hhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHH
Confidence            33333333333333444443220 1111      1245677777778888888888999998888887777777777777


Q ss_pred             HHhhccccHHHHHhCCcHHHHHHHHhcCC------------HHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHc
Q 008585          385 RNLVGSVSQEVLISLGFFPRLVHVLKAGS------------LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE  451 (560)
Q Consensus       385 ~nla~~~~~~~l~~~~~i~~Lv~lL~~~~------------~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~  451 (560)
                      ..+...+..+  +...-+..+++.|+++-            .........+++.+. -+-..++.+.++++...|...+.
T Consensus       707 scLitvdpkq--vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  707 SCLITVDPKQ--VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             HHHhccCccc--ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence            7776511110  01234667788887632            133445566777765 33567888889988888877774

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=84.88  E-value=13  Score=40.44  Aligned_cols=252  Identities=12%  Similarity=0.123  Sum_probs=148.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCENWLVS  235 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~~l~~  235 (560)
                      ..+..++..+.+.+.+-...|.+-+..-++   .++..-.++.|+..+..++  ..+..-.+..-..+.. .+     .+
T Consensus       258 ~fLeel~lks~~eK~~Ff~~L~~~l~~~pe---~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----yq  328 (690)
T KOG1243|consen  258 LFLEELRLKSVEEKQKFFSGLIDRLDNFPE---EIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----YQ  328 (690)
T ss_pred             HHHHhcccCcHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----cc
Confidence            344555677777777777776664433332   2333345666666665554  2222222222112211 11     56


Q ss_pred             CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (560)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (560)
                      .+++|.|+++++..+..+|..-..=+.+..  +.....++..-++|.+..-+.+.++.+|...+..+..|+.--.  ..-
T Consensus       329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--~~~  404 (690)
T KOG1243|consen  329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--KRN  404 (690)
T ss_pred             cchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--hhh
Confidence            678999999999999888875443333322  2223455666777888888899999999999988887764111  111


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCC-HHHHHHhccC--CccHHHHHHHHHHhhcccc
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-IRSLLAYLDG--PLPQESAVGALRNLVGSVS  392 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~-l~~L~~ll~~--~~~~~~a~~~L~nla~~~~  392 (560)
                      .....+..+..+-.+.+. .+|.+..-||+.++.+...    ..+.++ +....+-+.+  ...+..++.++......-.
T Consensus       405 Ln~Ellr~~ar~q~d~~~-~irtntticlgki~~~l~~----~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~  479 (690)
T KOG1243|consen  405 LNGELLRYLARLQPDEHG-GIRTNTTICLGKIAPHLAA----SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD  479 (690)
T ss_pred             hcHHHHHHHHhhCccccC-cccccceeeecccccccch----hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence            122245556665555555 7899999999999875321    113333 3345555555  4557777777766665111


Q ss_pred             HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      ... +...+++.++-+.-+.+..++..|-.++..+-
T Consensus       480 ~~~-va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  480 QSE-VANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             hhh-hhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            111 13456777777777777778877777776654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=84.87  E-value=7.9  Score=42.26  Aligned_cols=131  Identities=17%  Similarity=0.110  Sum_probs=84.0

Q ss_pred             CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHH
Q 008585          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR  356 (560)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~  356 (560)
                      ..+++.|..-+++.+..+|..++..+..++..-+  -.++..-++|.+-++.-..+...++.+++.|+..+...      
T Consensus       388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~------  459 (700)
T KOG2137|consen  388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR------  459 (700)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH------
Confidence            4556788888888899999999999988876322  33444556788888755555458999999999998831      


Q ss_pred             HHHhCCCHHHHHHh---cc--CCccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHH
Q 008585          357 SVVSEGGIRSLLAY---LD--GPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGA  416 (560)
Q Consensus       357 ~i~~~g~l~~L~~l---l~--~~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v  416 (560)
                       +-...+++.+..+   +.  +|.+.-..+.+..++.. ......+..+.++|.++.+...+.-..
T Consensus       460 -lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  460 -LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             -HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccH
Confidence             2222234443333   32  35566666666666665 222244555677777777766655333

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=84.21  E-value=6.7  Score=42.64  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHH
Q 008585          399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV  478 (560)
Q Consensus       399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~  478 (560)
                      .+++..+++-..+.+..|+..++..|..+.........-.-.+..+.+..-+....+.||..|..+|+.+-.++.+ .+ 
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-ee-  161 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-EE-  161 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-Cc-
Confidence            3455555566667889999999999999986422222222235567777777888899999999999999543322 11 


Q ss_pred             hhhCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585          479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (560)
Q Consensus       479 ~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L  508 (560)
                         ...+..+..+++..|.++++..++..+
T Consensus       162 ---~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  162 ---CPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             ---ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence               134577778888777777887765543

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.10  E-value=54  Score=33.65  Aligned_cols=263  Identities=12%  Similarity=0.115  Sum_probs=144.5

Q ss_pred             hhhHHHHHhCCChHHHHHHhccCC-hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh---cC------CchhHH
Q 008585          268 AEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CG------ILLGSK  337 (560)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~---~~------~~~~v~  337 (560)
                      .+++..+.     ..++.++..+. +..+..++.+++-|+.+...-.-+.....+..++.+.+   ..      .+..+.
T Consensus        40 ~d~r~eL~-----e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi  114 (532)
T KOG4464|consen   40 SDDRKELG-----ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVI  114 (532)
T ss_pred             hhhHHHHH-----HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHH
Confidence            34455554     66777887765 45667888899888876655544444444455555532   11      112678


Q ss_pred             HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-------CccHHHHHHHHHHhhc--cccHH-HHHhCCcHHHHHH
Q 008585          338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-------PLPQESAVGALRNLVG--SVSQE-VLISLGFFPRLVH  407 (560)
Q Consensus       338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-------~~~~~~a~~~L~nla~--~~~~~-~l~~~~~i~~Lv~  407 (560)
                      ..++.||+|+..++...++...+......+++.+..       .++...=++.|--+..  ...+. .+.+.++++.+.+
T Consensus       115 ~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~  194 (532)
T KOG4464|consen  115 MESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTN  194 (532)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHH
Confidence            889999999999999888888887777777776532       2344444555544444  33333 4456788888888


Q ss_pred             HHhcC---------C------HHHHHHHHHHHHHHhCCh------hHHHHHHh-cCCHHHHHHHHccC--C---------
Q 008585          408 VLKAG---------S------LGAQQAAASALCRVCTSA------EMKKLVGE-AGCTPLLIKLLEAK--P---------  454 (560)
Q Consensus       408 lL~~~---------~------~~v~~~A~~aL~~La~~~------~~~~~i~~-~g~i~~Lv~ll~s~--~---------  454 (560)
                      .+.+.         .      .....+++.++.|+..+.      ++.....- .+...+.+..+...  +         
T Consensus       195 ~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~  274 (532)
T KOG4464|consen  195 WLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVN  274 (532)
T ss_pred             HhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCC
Confidence            88641         1      123456677777776541      11111101 12222222222111  1         


Q ss_pred             --HHHHHHHHHHHHHhcCCChhhHHHh-hhCCChHHHHhccCCCCc--------hhhHHHHHHHHHHhCCChhhHHHHHH
Q 008585          455 --NSVREVAAQAISSLVTLPQNCREVK-RDDKSVPNLVQLLDPSPQ--------NTAKKYAVACLASLSPSKKCKKLMIS  523 (560)
Q Consensus       455 --~~v~~~A~~aL~~L~~~~~~~~~~~-~~~~~v~~Lv~lL~~~~~--------~~~~~~a~~~L~~L~~~~~~r~~i~~  523 (560)
                        +.+....+.++...-.+......|. .+...+..+..+|...+.        .+...-.+++|..++++...-+.+..
T Consensus       275 ~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr  354 (532)
T KOG4464|consen  275 LLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLR  354 (532)
T ss_pred             ccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHH
Confidence              1233444444433322222222222 233344555566654421        11233456777888887765555666


Q ss_pred             cChhHHHHHhhc
Q 008585          524 YGAIGYLKKLSE  535 (560)
Q Consensus       524 ~g~i~~L~~L~~  535 (560)
                      ...+|.|.+...
T Consensus       355 ~qVLPPLrDV~~  366 (532)
T KOG4464|consen  355 QQVLPPLRDVSQ  366 (532)
T ss_pred             HhcCCchhhhhc
Confidence            668888886643

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.68  E-value=6.1  Score=41.80  Aligned_cols=122  Identities=15%  Similarity=0.091  Sum_probs=83.4

Q ss_pred             cCcHHHHHHH-hhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhccccH
Q 008585          318 EGIVSVMIKL-LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQ  393 (560)
Q Consensus       318 ~g~v~~L~~l-L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~  393 (560)
                      .|++..+++. +.++++ +|++.|.-+|+-+|..+...         +...+++|..   +-+|....-+|+-.|.....
T Consensus       550 ~~vv~~lLh~avsD~nD-DVrRAAViAlGfvc~~D~~~---------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~  619 (926)
T COG5116         550 LGVVSTLLHYAVSDGND-DVRRAAVIALGFVCCDDRDL---------LVGTVELLSESHNFHVRAGVAVALGIACAGTGD  619 (926)
T ss_pred             chhHhhhheeecccCch-HHHHHHHHheeeeEecCcch---------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence            4577777777 566776 89999999999998876543         5556666643   56777778888877763222


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh--CChhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585          394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC--TSAEMKKLVGEAGCTPLLIKLLEAKPNS  456 (560)
Q Consensus       394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La--~~~~~~~~i~~~g~i~~Lv~ll~s~~~~  456 (560)
                      +     -.+..|-.++...+.-|++.|+.+++-+.  ++++.-..+  .+.++.+.+++..++++
T Consensus       620 ~-----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe~  677 (926)
T COG5116         620 K-----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHES  677 (926)
T ss_pred             H-----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhHh
Confidence            1     13555666677788889999999998876  334443333  34567777777666554

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=82.85  E-value=4.4  Score=32.40  Aligned_cols=71  Identities=11%  Similarity=0.083  Sum_probs=55.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (560)
                      ....+..|++..+.+|..++..|.++.....  ...+--.+.+..+...|+++++.+--.|+.+|..|+...+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence            5566777888888999999999999997655  1111123567788889999999999999999999987554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=82.76  E-value=3.7  Score=38.73  Aligned_cols=81  Identities=17%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhhCChhhHHHHHhCCChHH-------HHHHhc-cCChHHHHHHHHHHHHhcCCc-hhHHHHH-hcCcH
Q 008585          252 VGKEKATISLQRLSMSAEMARAIVGHGGVRP-------LIEICQ-TGDSVSQAAAACTLKNISAVP-EVRQMLA-EEGIV  321 (560)
Q Consensus       252 ~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~-------Lv~ll~-~~~~~~~~~a~~aL~nLa~~~-~~~~~i~-e~g~v  321 (560)
                      .-|..|..+|++|+..+.|...+...+-...       |++++. .+++..|..|...|.||+..+ ..+..+. +.++|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            4588999999999998888887776655443       444443 378899999999999999754 4554444 48899


Q ss_pred             HHHHHHhhcCC
Q 008585          322 SVMIKLLDCGI  332 (560)
Q Consensus       322 ~~L~~lL~~~~  332 (560)
                      ..|+.++++.+
T Consensus       219 ~~Li~FiE~a~  229 (257)
T PF12031_consen  219 SHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999998755

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=82.39  E-value=75  Score=34.86  Aligned_cols=165  Identities=18%  Similarity=0.161  Sum_probs=89.9

Q ss_pred             CcHHHHHHHhhcCCchh-HHHHHHHHHHHH-ccCChhHHHHHHhCCCHHHHHHhccCC------ccHHHHHHHHHHhhc-
Q 008585          319 GIVSVMIKLLDCGILLG-SKEYAAECLQNL-TASNENLRRSVVSEGGIRSLLAYLDGP------LPQESAVGALRNLVG-  389 (560)
Q Consensus       319 g~v~~L~~lL~~~~~~~-v~~~a~~~L~~L-a~~~~~~~~~i~~~g~l~~L~~ll~~~------~~~~~a~~~L~nla~-  389 (560)
                      .++..+.+.+.++.-.. .....+..+... ...++..         +..+..++.++      .++..|+-+++++.. 
T Consensus       357 ~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~---------l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~  427 (574)
T smart00638      357 PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEI---------LKALFELAESPEVQKQPYLRESALLAYGSLVRR  427 (574)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHH---------HHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence            46677777777765311 112222222222 2233322         56666776542      345666777777665 


Q ss_pred             ---c-ccHHHHHhCCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc---cCCHHHH
Q 008585          390 ---S-VSQEVLISLGFFPRLVHVLK----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE---AKPNSVR  458 (560)
Q Consensus       390 ---~-~~~~~l~~~~~i~~Lv~lL~----~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~---s~~~~v~  458 (560)
                         . ......+...+++.+...|.    .++...+..++.+|+|+...          ..++.|...+.   ..+..+|
T Consensus       428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR  497 (574)
T smart00638      428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIR  497 (574)
T ss_pred             HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHH
Confidence               1 11001112335666666554    34666778889999998754          22444444443   2346699


Q ss_pred             HHHHHHHHHhcC-CChhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHh
Q 008585          459 EVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASL  511 (560)
Q Consensus       459 ~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L  511 (560)
                      ..|+++|..++. ++...         .+.++++..+. .+.++|..|+..+...
T Consensus       498 ~~Av~Alr~~a~~~p~~v---------~~~l~~i~~n~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      498 LAAILALRNLAKRDPRKV---------QEVLLPIYLNRAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHHHhCchHH---------HHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            999999998863 22222         24455554443 4446776666665544

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.39  E-value=11  Score=30.49  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHhhChHHHHHHh-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh
Q 008585          169 EAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE  247 (560)
Q Consensus       169 ~~~~~A~~~L~~L~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~  247 (560)
                      |.|..|+..+..-...+--....+. ..+.+..|++....+.+...+.++..+..+..++.....+.+-|+...|.++-.
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~   81 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP   81 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence            4566777665554433222222233 334566777777777777899999999999999998899999998888777666


Q ss_pred             cCCHHHHHHHHHHHH
Q 008585          248 SGSTVGKEKATISLQ  262 (560)
Q Consensus       248 ~~~~~~~~~a~~~L~  262 (560)
                      .-++..+...-.++.
T Consensus        82 ~~~~~~~~~id~il~   96 (98)
T PF14726_consen   82 NVEPNLQAEIDEILD   96 (98)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            566666655544443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=82.01  E-value=52  Score=32.00  Aligned_cols=216  Identities=16%  Similarity=0.098  Sum_probs=119.3

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhh----ChHHHHHHh------hC-CCHHHHHHhhcCC--CHHHHHHHHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKE----DEKNVLAVM------GR-SNIAALVQLLTAT--SPRIREKTVTVIC  221 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~----~~~~~~~i~------~~-g~v~~Lv~lL~~~--~~~v~~~A~~~L~  221 (560)
                      ..|.-+++|++..+.+=..|+..|..+...    ++..+..+.      .+ |..+-+..++-.+  ++...+.++..|.
T Consensus         8 lFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~   87 (262)
T PF14225_consen    8 LFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLS   87 (262)
T ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHH
Confidence            467888999999888888888888887653    233333222      12 4444444443222  3456778888888


Q ss_pred             HHhcCCc--------hHHHHHhCCCHHHHHHhhhcCC----HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc
Q 008585          222 SLAESGS--------CENWLVSEGVLPPLIRLVESGS----TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT  289 (560)
Q Consensus       222 ~La~~~~--------~~~~l~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~  289 (560)
                      .|+..+.        .|-.+.=.+.+|.++.-+.+++    ...-..++..|..++....       ...+..++.....
T Consensus        88 ~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~  160 (262)
T PF14225_consen   88 RLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAK  160 (262)
T ss_pred             HHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHh
Confidence            8887543        2222222235666666666666    1334456677777763211       1122223333222


Q ss_pred             -CC---hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHH
Q 008585          290 -GD---SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR  365 (560)
Q Consensus       290 -~~---~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~  365 (560)
                       ..   .+....++..|+.-.. |+     .+...+..++.++.++.. .++...+.+|..+-..-+..+.  .....+.
T Consensus       161 ~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~-w~~~~~L~iL~~ll~~~d~~~~--~~~dlis  231 (262)
T PF14225_consen  161 GRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPP-WLRRKTLQILKVLLPHVDMRSP--HGADLIS  231 (262)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhccccCCCC--cchHHHH
Confidence             11   1222333333332110 11     123456778888988886 8999999999998875443222  3344577


Q ss_pred             HHHHhccCCccHHHHHHHHHHh
Q 008585          366 SLLAYLDGPLPQESAVGALRNL  387 (560)
Q Consensus       366 ~L~~ll~~~~~~~~a~~~L~nl  387 (560)
                      ++++++++ +.-..|+.+|.+.
T Consensus       232 pllrlL~t-~~~~eAL~VLd~~  252 (262)
T PF14225_consen  232 PLLRLLQT-DLWMEALEVLDEI  252 (262)
T ss_pred             HHHHHhCC-ccHHHHHHHHHHH
Confidence            77777754 2334444444443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=81.88  E-value=80  Score=34.67  Aligned_cols=203  Identities=17%  Similarity=0.152  Sum_probs=107.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc----hHHHHHhCC---CHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--h
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGS----CENWLVSEG---VLPPLIRLVESGSTVGKEKATISLQRLSMS--A  268 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~~~l~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~  268 (560)
                      +-.|+++|+.-+.+-.+....-+.. .. ..    ..+.+...|   .+..+.+.+.++..... .++..+..+...  .
T Consensus       313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~  389 (574)
T smart00638      313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARY  389 (574)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhc
Confidence            5567777766554433333333322 11 11    334444445   45556666666543222 223333333211  2


Q ss_pred             hhHHHHHhCCChHHHHHHhcc----CChHHHHHHHHHHHHhc----CCchhHHHHHhcCcHHHHHHHhhc----CCchhH
Q 008585          269 EMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNIS----AVPEVRQMLAEEGIVSVMIKLLDC----GILLGS  336 (560)
Q Consensus       269 ~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa----~~~~~~~~i~e~g~v~~L~~lL~~----~~~~~v  336 (560)
                      +....+      ..+..++.+    ..+.++..+.-+++++.    .+.+.+...+-...++.+...+..    ++. +.
T Consensus       390 Pt~~~l------~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~  462 (574)
T smart00638      390 PTEEIL------KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE-EE  462 (574)
T ss_pred             CCHHHH------HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc-hh
Confidence            222222      666677765    34566677776666664    222222122223356666666543    333 45


Q ss_pred             HHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-C----CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc
Q 008585          337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA  411 (560)
Q Consensus       337 ~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-~----~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~  411 (560)
                      +...+.+|+|+.....           +..+..++. +    +.+|..|+++|+.++....      ..+.+.++.+..+
T Consensus       463 ~~~~LkaLGN~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p------~~v~~~l~~i~~n  525 (574)
T smart00638      463 IQLYLKALGNAGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP------RKVQEVLLPIYLN  525 (574)
T ss_pred             eeeHHHhhhccCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc------hHHHHHHHHHHcC
Confidence            6678888998875322           344555554 2    3478999999998875111      1235556666655


Q ss_pred             --CCHHHHHHHHHHHHHH
Q 008585          412 --GSLGAQQAAASALCRV  427 (560)
Q Consensus       412 --~~~~v~~~A~~aL~~L  427 (560)
                        .+++++..|..+|...
T Consensus       526 ~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      526 RAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             CCCChHHHHHHHHHHHhc
Confidence              4588888888777664

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=81.54  E-value=14  Score=36.04  Aligned_cols=179  Identities=17%  Similarity=0.130  Sum_probs=104.5

Q ss_pred             HHHHHHhccC--CccHHHHHHHHHHhhcc-ccHHHHHhCC--cHHHHHHHHhc----CCHHHHHHHHHHHHHHhCChhHH
Q 008585          364 IRSLLAYLDG--PLPQESAVGALRNLVGS-VSQEVLISLG--FFPRLVHVLKA----GSLGAQQAAASALCRVCTSAEMK  434 (560)
Q Consensus       364 l~~L~~ll~~--~~~~~~a~~~L~nla~~-~~~~~l~~~~--~i~~Lv~lL~~----~~~~v~~~A~~aL~~La~~~~~~  434 (560)
                      ...+...+..  ++.+.+++..++-++.. .....+...+  ....+...+..    ..+..+..++++++|+-.++..+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            3445555555  56789999999999883 3333333332  24555555543    45889999999999999888888


Q ss_pred             HHHHhcC--CHHHHHHHHccC----CHHHHHHHHHHHHHhcCCC--hh--hHHHhhhCCChHHHHh-ccCCCCchhhHHH
Q 008585          435 KLVGEAG--CTPLLIKLLEAK----PNSVREVAAQAISSLVTLP--QN--CREVKRDDKSVPNLVQ-LLDPSPQNTAKKY  503 (560)
Q Consensus       435 ~~i~~~g--~i~~Lv~ll~s~----~~~v~~~A~~aL~~L~~~~--~~--~~~~~~~~~~v~~Lv~-lL~~~~~~~~~~~  503 (560)
                      ..+.+..  .+...+..+...    +..+|..++..+.|++..-  .+  .....   ..+..+++ +.....+++...-
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~---~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS---ELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH---HHHHHHHHHCHCCHTSHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH---HHHHHHHHHhccccCCHHHHHH
Confidence            7776543  233333333333    6779999999999998211  11  11111   12455556 3333244455657


Q ss_pred             HHHHHHHhCCChhhHHHHHH-cChhHHHHHhhc-cCchhHHHHH
Q 008585          504 AVACLASLSPSKKCKKLMIS-YGAIGYLKKLSE-MDIPGARKLL  545 (560)
Q Consensus       504 a~~~L~~L~~~~~~r~~i~~-~g~i~~L~~L~~-~~~~~akkl~  545 (560)
                      .+.++.+|...+.....+.. .|+-..+.+..+ ...+..|++.
T Consensus       222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence            77888888765655444444 455555555543 2234444443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=81.39  E-value=4.9  Score=39.29  Aligned_cols=144  Identities=17%  Similarity=0.114  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHhCC--CHHHHHHhhhc----CCHHHHHHHHHHHHHhhCChhhHHHHHhCC--ChHHH
Q 008585          212 IREKTVTVICSLAESGSCENWLVSEG--VLPPLIRLVES----GSTVGKEKATISLQRLSMSAEMARAIVGHG--GVRPL  283 (560)
Q Consensus       212 v~~~A~~~L~~La~~~~~~~~l~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~l~~~g--~i~~L  283 (560)
                      -+--++..++.+..++.....+...+  ....+..++..    .++..+..+++++.|+..++..+..+.++.  .+...
T Consensus        79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~  158 (268)
T PF08324_consen   79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL  158 (268)
T ss_dssp             C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred             cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence            34455566666666666544544433  24444444433    467788899999999988888887777644  34444


Q ss_pred             HHHhccC----ChHHHHHHHHHHHHhcCCc-hhH-HHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHH
Q 008585          284 IEICQTG----DSVSQAAAACTLKNISAVP-EVR-QMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLR  355 (560)
Q Consensus       284 v~ll~~~----~~~~~~~a~~aL~nLa~~~-~~~-~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~  355 (560)
                      +.-+...    +..++..++..+.|++..- ..+ ..-.....+..+.+.+. ...+.++.+.++.+|+++...++..+
T Consensus       159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~  237 (268)
T PF08324_consen  159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK  237 (268)
T ss_dssp             CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence            4444433    6788999999999997411 000 00000113455555332 32334899999999999998666543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=81.25  E-value=12  Score=33.59  Aligned_cols=109  Identities=23%  Similarity=0.221  Sum_probs=68.6

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc---CChhH
Q 008585          280 VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENL  354 (560)
Q Consensus       280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~---~~~~~  354 (560)
                      +..+..++++.++..|-.++..+.-++...+ .+.+.+  ..-+..+++++++.++..+.+.++.+|..|..   +.++.
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l  105 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL  105 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence            4567788888888888888777777665321 234433  33577888889887776788888888888765   33443


Q ss_pred             HHHHHh---CCCHHHHHHhccCCccHHHHHHHHHHhhc
Q 008585          355 RRSVVS---EGGIRSLLAYLDGPLPQESAVGALRNLVG  389 (560)
Q Consensus       355 ~~~i~~---~g~l~~L~~ll~~~~~~~~a~~~L~nla~  389 (560)
                      .+.+.-   .+.++.++++++++...+.++.+|..+..
T Consensus       106 ~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  106 TREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP  143 (165)
T ss_pred             HHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            333332   12344445545444556666666666654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=81.25  E-value=6.3  Score=31.53  Aligned_cols=71  Identities=10%  Similarity=0.021  Sum_probs=55.1

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                      ...+..+.++.+.+|.+++..|++|..... .......+++..+...++++++ .+--+|..+|..|+...+.
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~Ds-yVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDS-YVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHChH
Confidence            445566778888999999999999986544 2222235678888888999887 8999999999999986554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=80.97  E-value=59  Score=33.47  Aligned_cols=158  Identities=18%  Similarity=0.104  Sum_probs=87.2

Q ss_pred             HHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc-cC----Ccc
Q 008585          302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-DG----PLP  376 (560)
Q Consensus       302 L~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll-~~----~~~  376 (560)
                      +-||+-.+ .-..+.|..-.+.+-.-++..+....|..|+..|..++...+..-..++ .+.+..++.-. .+    ..-
T Consensus       194 ~Pnl~~~e-~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~  271 (370)
T PF08506_consen  194 FPNLCLRE-EDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRS  271 (370)
T ss_dssp             HHHHS--H-HHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHH
T ss_pred             cCccCCCH-HHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHH
Confidence            44555442 3344555566666666665433336788899999999864322111111 11233322211 12    245


Q ss_pred             HHHHHHHHHHhhccc--------------cHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCC
Q 008585          377 QESAVGALRNLVGSV--------------SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGC  442 (560)
Q Consensus       377 ~~~a~~~L~nla~~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~  442 (560)
                      ++.|+..++.++...              +-..+....++|-|. -=.+..|-++..|++.+..+-..- .+..+  .+.
T Consensus       272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~  347 (370)
T PF08506_consen  272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQI  347 (370)
T ss_dssp             HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHH
T ss_pred             HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHH
Confidence            788999999999721              112223333333333 111345788899999998887541 11222  246


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHH
Q 008585          443 TPLLIKLLEAKPNSVREVAAQAI  465 (560)
Q Consensus       443 i~~Lv~ll~s~~~~v~~~A~~aL  465 (560)
                      +|.+++.+.+++.-|+..|+.++
T Consensus       348 ~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  348 FPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcchhhhhhhhC
Confidence            99999999999999999998775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=80.92  E-value=53  Score=31.34  Aligned_cols=135  Identities=20%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             HHHH-hhcCCCHHHHHHHHHHHHHHhcCC-chHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhC
Q 008585          200 ALVQ-LLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH  277 (560)
Q Consensus       200 ~Lv~-lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~  277 (560)
                      .|+. +-+..+++.+...+..|..++.++ .+...     ++..+..+.+.+....+..+.+.+..+-...+-..     
T Consensus         4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----   73 (234)
T PF12530_consen    4 LLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----   73 (234)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence            3444 445567999999999999999887 43333     34555555666666665566666666643222111     


Q ss_pred             CChHHHHHHh--------c--cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh-hcCCchhHHHHHHHHHHH
Q 008585          278 GGVRPLIEIC--------Q--TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQN  346 (560)
Q Consensus       278 g~i~~Lv~ll--------~--~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL-~~~~~~~v~~~a~~~L~~  346 (560)
                      +.+..++..+        .  +...+.....+.++..++.....    .....++.+..++ ++.++ .++..++..|..
T Consensus        74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~-~~~alale~l~~  148 (234)
T PF12530_consen   74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDE-VAQALALEALAP  148 (234)
T ss_pred             HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccH-HHHHHHHHHHHH
Confidence            2233333331        1  11234445556677777753322    1223577777778 55554 789999999999


Q ss_pred             Hcc
Q 008585          347 LTA  349 (560)
Q Consensus       347 La~  349 (560)
                      ++.
T Consensus       149 Lc~  151 (234)
T PF12530_consen  149 LCE  151 (234)
T ss_pred             HHH
Confidence            984

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=80.75  E-value=58  Score=31.70  Aligned_cols=214  Identities=18%  Similarity=0.159  Sum_probs=118.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc--CCHHHHHHHHHHHHHhhCChhhHHHHHhC
Q 008585          200 ALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGH  277 (560)
Q Consensus       200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~l~~~  277 (560)
                      .|-..|.++++.+|..|+..|+.+...-+.. . ....-+..|++...+  .+......++..+..|.......... ..
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~   79 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV   79 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence            4556788899999999999999886643311 0 112225556655443  24444444466666664322111100 00


Q ss_pred             CChHHHHHHh--ccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585          278 GGVRPLIEIC--QTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       278 g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                      ..+..+.+-.  ++.....|..+...|..+..+  ....+.+  ...+..++++++.+.++.....+...+..+...-+ 
T Consensus        80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-  156 (262)
T PF14500_consen   80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-  156 (262)
T ss_pred             HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence            1112222211  122345677888888887653  2222332  35778888888776655566666666666654322 


Q ss_pred             HHHHHHhCCCHHHHHHhccC--------C--c----cHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHH
Q 008585          354 LRRSVVSEGGIRSLLAYLDG--------P--L----PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQ  418 (560)
Q Consensus       354 ~~~~i~~~g~l~~L~~ll~~--------~--~----~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~  418 (560)
                           . ....+.+...+..        |  +    .++.-...|++.-. ...    ...-.++.|++-|.++.+.++.
T Consensus       157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~----fa~~~~p~LleKL~s~~~~~K~  226 (262)
T PF14500_consen  157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL----FAPFAFPLLLEKLDSTSPSVKL  226 (262)
T ss_pred             -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh----hHHHHHHHHHHHHcCCCcHHHH
Confidence                 1 2334455554421        1  1    23333334433332 111    1234689999999999999999


Q ss_pred             HHHHHHHHHhC
Q 008585          419 AAASALCRVCT  429 (560)
Q Consensus       419 ~A~~aL~~La~  429 (560)
                      .++.+|...+.
T Consensus       227 D~L~tL~~c~~  237 (262)
T PF14500_consen  227 DSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=80.42  E-value=7.1  Score=34.17  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 008585          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV  469 (560)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~  469 (560)
                      .+..|.+-|.++++.++..|+..|-.+..+  ..++..+....++..|++++.. .+..|+...+..+...+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            467777778889999999999999999855  7788899888999999999987 78889999999998886

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=80.36  E-value=30  Score=37.06  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~  275 (560)
                      |.+..+++.+.+.+..+|..++.+|..+...-.--+...-.|.+..|..-+-+..+.+|..|..+|+++-....+-.-..
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~  170 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI  170 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence            56777888888889999999999999887654322233444566666665666678899999999998854333322111


Q ss_pred             hCCChHHHHHHhcc-CChHHHHHHHHHHHHhcC
Q 008585          276 GHGGVRPLIEICQT-GDSVSQAAAACTLKNISA  307 (560)
Q Consensus       276 ~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~  307 (560)
                          ...|+.+++. ++.++|+.|+   .|+..
T Consensus       171 ----~n~l~~~vqnDPS~EVRr~al---lni~v  196 (885)
T COG5218         171 ----VNLLKDIVQNDPSDEVRRLAL---LNISV  196 (885)
T ss_pred             ----HHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence                1345555553 5667776654   45543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	560
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-07
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-06
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		8e-04
2yns_A	490	Rimp_alpha_b54nls Length = 490		2e-04
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-04
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		6e-04
4b8j_A	528	Rimp_alpha1a Length = 528		6e-04
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		6e-04

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 8/198 (4%)
Query: 196 SNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVES-GSTVG 253
           +++  LV+LLT+T    +++    +  +A    S    +V  G +  L++L+ S  S V 
Sbjct: 2   NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVR 312
           KE A       S   E  +AIV  GGV  L+++  + DS  Q  AA  L NI++ P E  
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR---SLLA 369
           + + + G V V++KLL        KE AA  L N+ +  +   +++V  GG+     LL 
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 370 YLDGPLPQESAVGALRNL 387
             D  + +E+A  AL N+
Sbjct: 181 STDSEVQKEAA-RALANI 197

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 12/236 (5%)
Query: 242 LIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           L++L+ S  +  +++A   L  + S  A   +AIV  GGV  L+++  + DS  Q  AA 
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 301 TLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359
            L NI++ P E  + + + G V V++KLL        KE AA  L N+ +  +   +++V
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASGPDEAIKAIV 125
Query: 360 SEGGIR---SLLAYLDGPLPQESAVGALRNLVGSVSQEV--LISLGFFPRLVHVLKXXXX 414
             GG+     LL   D  + +E+A  AL N+     + +  ++  G    LV +L     
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAA-RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 415 XXXXXXXXXXCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468
                       + +  ++ +K +V +AG   +L KLL +  + V++ A +A+ ++
Sbjct: 185 EVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 45/258 (17%)
Query: 280 VRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKE 338
           V  L+++  + DS +Q  AA  L  I++ P    + + + G V V++KLL        KE
Sbjct: 4   VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 339 YAAECLQNLTASNENLRRSVVSEGGIR---SLLAYLDGPLPQESAVGALRNLVGSVSQEV 395
            AA  L N+ +  +   +++V  GG+     LL   D  + +E+A               
Sbjct: 64  -AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA-------------RA 109
Query: 396 LISLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPN 455
           L ++   P                            E  K + +AG   +L+KLL +  +
Sbjct: 110 LANIASGPD---------------------------EAIKAIVDAGGVEVLVKLLTSTDS 142
Query: 456 SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515
            V++ AA+A++++ + P    +   D   V  LV+LL  +     K+ A A     S   
Sbjct: 143 EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202
Query: 516 KCKKLMISYGAIGYLKKL 533
              K ++  G +  L+KL
Sbjct: 203 SAIKAIVDAGGVEVLQKL 220

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 38/325 (11%)
Query: 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI--VGHGGVRP-LIEICQTGDSVS- 294
           LP +I  V S     + +AT   ++L +S E +  I  V   GV P  ++     D    
Sbjct: 38  LPAMIGGVYSDDNNLQLEATTQFRKL-LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGS-----KEYAAECLQNLT 348
           Q  AA  L NI S   E  +++ + G V + +KLL      GS     +E A   L N+ 
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------GSSSDDVREQAVWALGNVA 150
Query: 349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS-----------QEVLI 397
             +   R  V++ G +  LLA L+    + + +  LRN   ++S           ++   
Sbjct: 151 GDSPKCRDLVLANGALLPLLAQLN----EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 206
Query: 398 SLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSV 457
           +L    RL+H                     T+ +++ ++ EAG  P L++LL     SV
Sbjct: 207 ALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSPSV 264
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
              A + + ++VT      +   D +++P L+ LL  + + + KK A   +++++   K 
Sbjct: 265 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 324
Query: 518 K-KLMISYGAIGYLKKL---SEMDI 538
           + + +I+ G IG L  L   +E DI
Sbjct: 325 QIQAVINAGIIGPLVNLLQTAEFDI 349

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 9/197 (4%)
Query: 345 QNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ--ESAVGALRNLVGSVSQEV--LISLG 400
           Q L+  NE ++ +V+  G + +L+  L  P  Q  + A+ AL N+    ++++  +I  G
Sbjct: 38  QILSDGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 401 FFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
             P LV +L                 + +   E  + V +AG  P L++LL +    + +
Sbjct: 97  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 460 VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK 519
            A  A+S++ +      +   D  ++P LVQLL  SP     + A+  L++++     +K
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 215
Query: 520 LMISYGAIGYLKKLSEM 536
             +     G L+KL ++
Sbjct: 216 QAVKEA--GALEKLEQL 230

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 368 LAYLDGPLPQESAVGALRNLVGSVSQ----EVLISLGFFPRLVHVLKXXXXXXXXXXXXX 423
           + +   P  Q SA    R L+         EV+ + G   R V  LK             
Sbjct: 28  MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87
Query: 424 XCRVCTSAE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481
                 S      ++V +AG  P+ I+LL ++   V+E A  A+ ++      CR+   D
Sbjct: 88  VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASL----SPSKKCKKLMISYGAIGYLKKLSEMD 537
              +P L+QL     + T  + AV  L++L    SP  +  K+      + +L  +S+ D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 538 I 538
           +
Sbjct: 208 V 208

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 38/325 (11%)
Query: 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI--VGHGGVRP-LIEICQTGDSVS- 294
           LP +I  V S     + +AT   ++L +S E +  I  V   GV P  ++     D    
Sbjct: 76  LPAMIGGVYSDDNNLQLEATTQFRKL-LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 134
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGS-----KEYAAECLQNLT 348
           Q  AA  L NI S   E  +++ + G V + +KLL      GS     +E A   L N+ 
Sbjct: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------GSSSDDVREQAVWALGNVA 188
Query: 349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS-----------QEVLI 397
             +   R  V++ G +  LLA L+    + + +  LRN   ++S           ++   
Sbjct: 189 GDSPKCRDLVLANGALLPLLAQLN----EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244
Query: 398 SLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSV 457
           +L    RL+H                     T+ +++ ++ EAG  P L++LL     SV
Sbjct: 245 ALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSPSV 302
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
              A + + ++VT      +   D +++P L+ LL  + + + KK A   +++++   K 
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 518 K-KLMISYGAIGYLKKL---SEMDI 538
           + + +I+ G IG L  L   +E DI
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDI 387

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 368 LAYLDGPLPQESAVGALRNLVGSVSQ----EVLISLGFFPRLVHVLKXXXXXXXXXXXXX 423
           + +   P  Q SA    R L+         EV+ + G   R V  LK             
Sbjct: 25  MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 84
Query: 424 XCRVCTSAE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481
                 S      ++V +AG  P+ I+LL ++   V+E A  A+ ++      CR+   D
Sbjct: 85  VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 144
Query: 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASL----SPSKKCKKLMISYGAIGYLKKLSEMD 537
              +P L+QL     + T  + AV  L++L    SP  +  K+      + +L  +S+ D
Sbjct: 145 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 204
Query: 538 I 538
           +
Sbjct: 205 V 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	560
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-54
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-49
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-36
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-35
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-29
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-49
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-38
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-36
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-50
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-38
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-43
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-35
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-29
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-16
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-13
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-32
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-23
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-32
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-23
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-10
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-32
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-25
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-17
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-31
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-30
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-27
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-26
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-12
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-25
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-25
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-14
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-12
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	7e-10
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	5e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  195 bits (496), Expect = 4e-54
 Identities = 69/398 (17%), Positives = 154/398 (38%), Gaps = 13/398 (3%)

Query: 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREK 215
            EL   L        +KA   + +  K++      +     ++A+V+ +           
Sbjct: 153 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 212

Query: 216 TVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-AI 274
           T   + +L+        +   G +P L+ ++ S        A  +L  L +  E A+ A+
Sbjct: 213 TSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGIL 333
              GG++ ++ +    +    A     L+ ++    E + ++   G    ++ ++     
Sbjct: 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 332

Query: 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSV 391
                  +  L+ L+  + N + ++V  GG+++L  +L  P     ++ +  LRNL  + 
Sbjct: 333 EKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391

Query: 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLL 450
           +++  +  G    LV +L +  +     AA  L  +   + + K +V + G    L++ +
Sbjct: 392 TKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450

Query: 451 EAKPNS--VREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAV 505
               +   + E A  A+  L +  Q+    +   R    +P +V+LL P       K  V
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510

Query: 506 ACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARK 543
             + +L+        +   GAI  L +L        ++
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 548

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  181 bits (460), Expect = 3e-49
 Identities = 90/425 (21%), Positives = 151/425 (35%), Gaps = 39/425 (9%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI 212
            G    L+  L          A+ +L   +   E   +AV     +  +V LL  T+ + 
Sbjct: 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292

Query: 213 REKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLSMSAEM 270
              T   +  LA      +  +++ G    L+ ++ + +        +  L+ LS+ +  
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC 330
             AIV  GG++ L                 TL+N+S      +    EG++  +++LL  
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGS 410

Query: 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAVGALRN 386
             +      AA  L NLT +N   +  V   GGI +L+  +    D     E A+ ALR+
Sbjct: 411 DDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 387 LV-----GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEA 440
           L        ++Q  +      P +V +L   S      A   L R           + E 
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 529

Query: 441 GCTPLLIKLLEAKPNSVR----------------------EVAAQAISSLVTLPQNCREV 478
           G  P L++LL       +                      E    A+  L     N R V
Sbjct: 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN-RIV 588

Query: 479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDI 538
            R   ++P  VQLL  SP    ++ A   L  L+  K+  + + + GA   L +L     
Sbjct: 589 IRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 647

Query: 539 PGARK 543
            G   
Sbjct: 648 EGVAT 652

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  143 bits (362), Expect = 2e-36
 Identities = 65/372 (17%), Positives = 129/372 (34%), Gaps = 38/372 (10%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  ++    E        +++ +     N  A++    + AL   LT  S R+ +  + 
Sbjct: 323 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382

Query: 219 VICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGH 277
            + +L+++         EG+L  L++L+ S        A   L  L+  + +    +   
Sbjct: 383 TLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440

Query: 278 GGVRPLIEICQTGDSVS--QAAAACTLKNISA----VPEVRQMLAEEGIVSVMIKLLDCG 331
           GG+  L+               A C L+++++        +  +     + V++KLL   
Sbjct: 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500

Query: 332 ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--------------- 376
                 +     ++NL     N    +  +G I  L+  L                    
Sbjct: 501 SHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559

Query: 377 ---------QESAVGALRNLVGSV-SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
                     E+  GAL  L   + ++ V+  L   P  V +L +     Q+ AA  LC 
Sbjct: 560 VEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 619

Query: 427 VCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
           +    E  + +   G T  L +LL ++   V   AA  +  +    ++  +  +   SV 
Sbjct: 620 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDYKKRLSVE 676

Query: 487 NLVQLLDPSPQN 498
               L    P  
Sbjct: 677 LTSSLFRTEPMT 688

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  139 bits (350), Expect = 8e-35
 Identities = 71/439 (16%), Positives = 144/439 (32%), Gaps = 38/439 (8%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           LS   +S  A   +      ++  +Q  +     +     +  +    + +LA+     I
Sbjct: 177 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGI 236

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKA 257
            ALV +L +    +    +T + +L       +  +   G L  ++ L+   +       
Sbjct: 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 296

Query: 258 TISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKNISAVPEVRQML 315
           T  LQ L+  + E    I+  GG + L+ I +T          +  LK +S     +  +
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
            E G +  +   L         +     L+NL+ +          EG + +L+  L    
Sbjct: 357 VEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 412

Query: 376 P--QESAVGALRNLV--GSVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVCT 429
                 A G L NL      ++ ++  +G    LV  +          + A  AL  + +
Sbjct: 413 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472

Query: 430 SAEMKKL----VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
             +  ++    V      P+++KLL    +     A   +   + L        R+  ++
Sbjct: 473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 532

Query: 486 PNLVQLL---------------------DPSPQNTAKKYAVACLASLSPSKKCKKLMISY 524
           P LVQLL                     +        +     L  L+     + ++   
Sbjct: 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592

Query: 525 GAIGYLKKLSEMDIPGARK 543
             I    +L    I   ++
Sbjct: 593 NTIPLFVQLLYSPIENIQR 611

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  122 bits (307), Expect = 2e-29
 Identities = 55/339 (16%), Positives = 98/339 (28%), Gaps = 18/339 (5%)

Query: 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG------STVGKEKATISLQR 263
             I     T   SL+  G+ E+  V   VL    +           + +  + A    QR
Sbjct: 33  SGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR 92

Query: 264 LSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ--AAAACTLKNISAVPE--VRQMLAEEG 319
             + A M    +  G   P  +      +  Q  A  +  LK+                 
Sbjct: 93  --VRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATR 150

Query: 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL---DGPLP 376
            +  + KLL+          AA  +  L+    +    + S   + +++  +   +    
Sbjct: 151 AIPELTKLLNDEDQ-VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 209

Query: 377 QESAVGALRNL-VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MK 434
                G L NL         +   G  P LV++L +        A + L  +    E  K
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269

Query: 435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP 494
             V  AG    ++ LL         +    +  L    Q  + +         LV ++  
Sbjct: 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329

Query: 495 SPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKL 533
                        L  LS     K  ++  G +  L   
Sbjct: 330 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 368

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  112 bits (282), Expect = 2e-26
 Identities = 60/358 (16%), Positives = 106/358 (29%), Gaps = 32/358 (8%)

Query: 128 KTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK 187
              ++      L     +   +    G    L+  L    +     A   L      + K
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432

Query: 188 NVLAVMGRSNIAALVQLLTATSPR--IREKTVTVICSLA----ESGSCENWLVSEGVLPP 241
           N + V     I ALV+ +     R  I E  +  +  L     ++   +N +     LP 
Sbjct: 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPV 492

Query: 242 LIRLVESGSTVGKEKATISL-QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           +++L+   S     KAT+ L + L++       +   G +  L+++       +Q   + 
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
                  V  VR     E                         L  L     N R  +  
Sbjct: 553 GGTQQQFVEGVRMEEIVEA--------------------CTGALHILARDIHN-RIVIRG 591

Query: 361 EGGIRSLLAYLDGPLP--QESAVGALRNLVGSVSQ-EVLISLGFFPRLVHVLKAGSLGAQ 417
              I   +  L  P+   Q  A G L  L       E + + G    L  +L + + G  
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 651

Query: 418 QAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474
             AA+ L R+     +  K       T  L +      N   ++     +    L   
Sbjct: 652 TYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYR 709

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  185 bits (471), Expect = 2e-51
 Identities = 69/397 (17%), Positives = 151/397 (38%), Gaps = 13/397 (3%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKT 216
           EL   L        +KA   + +  K++      +     ++A+V+ +           T
Sbjct: 18  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 77

Query: 217 VTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-AIV 275
              + +L+        +   G +P L++++ S        A  +L  L +  E A+ A+ 
Sbjct: 78  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137

Query: 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILL 334
             GG++ ++ +    +    A     L+ ++    E + ++   G    ++ ++      
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 197

Query: 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS 392
                 +  L+ L+  + N + ++V  GG+++L  +L  P     ++ +  LRNL    +
Sbjct: 198 KLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAA 255

Query: 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE 451
            +     G    LV +L +  +     AA  L  +   + + K +V + G    L++ + 
Sbjct: 256 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315

Query: 452 AKPNS--VREVAAQAISSLVTLPQNCREVK---RDDKSVPNLVQLLDPSPQNTAKKYAVA 506
              +   + E A  A+  L +  Q     +   R    +P +V+LL P       K  V 
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 507 CLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARK 543
            + +L+        +   GAI  L +L        ++
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 412

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  178 bits (454), Expect = 5e-49
 Identities = 63/348 (18%), Positives = 133/348 (38%), Gaps = 15/348 (4%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV-SEGVLPPLIRLVESGSTVG-KE 255
           I  L +LL      +  K   ++  L++  +  + ++ S  ++  ++R +++ + V    
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75

Query: 256 KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQM 314
               +L  LS   E   AI   GG+  L+++  +        A  TL N+       +  
Sbjct: 76  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP 374
           +   G +  M+ LL+    +       +CLQ L   N+  +  +++ GG ++L+  +   
Sbjct: 136 VRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194

Query: 375 LP---QESAVGALRNL-VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430
                  +    L+ L V S ++  ++  G    L   L   S    Q     L  +  S
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL--S 252

Query: 431 AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ 490
               K  G  G    L++LL +   +V   AA  +S+L       + +      +  LV+
Sbjct: 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312

Query: 491 LL-DPSPQNTAKKYAVACLASLS----PSKKCKKLMISYGAIGYLKKL 533
            +     +    + A+  L  L+     ++  +  +  +  +  + KL
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  154 bits (390), Expect = 2e-40
 Identities = 61/318 (19%), Positives = 120/318 (37%), Gaps = 13/318 (4%)

Query: 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGG-VRPLIEICQ 288
           ++  ++   +P L +L+     V   KA + + +LS       AI+     V  ++   Q
Sbjct: 7   DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 66

Query: 289 TGDSVS-QAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347
             + V      A TL N+S   E    + + G +  ++K+L   +      YA   L NL
Sbjct: 67  NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNL 125

Query: 348 TASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGS--VSQEVLISLGFFP 403
               E  + +V   GG++ ++A L+             L+ L      S+ ++++ G   
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185

Query: 404 RLVHVLKAGSL-GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA 462
            LV++++  +        +  L  +   +  K  + EAG    L   L      + +   
Sbjct: 186 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245

Query: 463 QAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS-PSKKCKKLM 521
             + +L        + +  +  +  LVQLL  S        A   L++L+  + K K ++
Sbjct: 246 WTLRNLS---DAATKQEGMEGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMV 301

Query: 522 ISYGAIGYLKKLSEMDIP 539
              G I  L +       
Sbjct: 302 CQVGGIEALVRTVLRAGD 319

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  147 bits (371), Expect = 9e-38
 Identities = 66/380 (17%), Positives = 130/380 (34%), Gaps = 38/380 (10%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  ++    E        +++ +     N  A++    + AL   LT  S R+ +  + 
Sbjct: 187 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246

Query: 219 VICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-AIVGH 277
            + +L+++         EG+L  L++L+ S        A   L  L+ +    +  +   
Sbjct: 247 TLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304

Query: 278 GGVRPLIEICQTGDSVS--QAAAACTLKNISA----VPEVRQMLAEEGIVSVMIKLLDCG 331
           GG+  L+               A C L+++++        +  +     + V++KLL   
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364

Query: 332 ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--------------- 376
                 +     ++NL     N    +  +G I  L+  L                    
Sbjct: 365 SHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423

Query: 377 ---------QESAVGALRNLVGSV-SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
                     E   GAL  L   V ++ V+  L   P  V +L +     Q+ AA  LC 
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483

Query: 427 VCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
           +    E  + +   G T  L +LL ++   V   AA  +  +    ++  +  +   SV 
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDYKKRLSVE 540

Query: 487 NLVQLLDPSPQNTAKKYAVA 506
               L    P    +   + 
Sbjct: 541 LTSSLFRTEPMAWNETADLG 560

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  146 bits (370), Expect = 1e-37
 Identities = 70/386 (18%), Positives = 145/386 (37%), Gaps = 36/386 (9%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTV 217
           ++A L   +++      D L      ++++ L ++      ALV ++ T T  ++   T 
Sbjct: 145 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 204

Query: 218 TVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH 277
            V+  L+   S +  +V  G +  L   +   S    +    +L   ++S    +     
Sbjct: 205 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL--RNLSDAATKQEGME 262

Query: 278 GGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGS 336
           G +  L+++  + D      AA  L N++    + + M+ + G +  +++ +        
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 337 -KEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDGPLP---QESAVGALRNLVG 389
             E A   L++LT+     E  + +V    G+  ++  L  P      ++ VG +RNL  
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 390 SVSQEVLI-SLGFFPRLVHVLKAGSLGAQQ----------------------AAASALCR 426
             +    +   G  PRLV +L       Q+                          AL  
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442

Query: 427 VCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
           +      + ++      PL ++LL +   +++ VAA  +  L    +    ++ +  +  
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG-ATA 501

Query: 487 NLVQLLDPSPQNTAKKYAVACLASLS 512
            L +LL  S       YA A L  +S
Sbjct: 502 PLTELLH-SRNEGVATYAAAVLFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  142 bits (360), Expect = 2e-36
 Identities = 71/410 (17%), Positives = 140/410 (34%), Gaps = 18/410 (4%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           LS   +S  A   +      ++  +Q  +     +     +  +    + +LA+     I
Sbjct: 41  LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKA 257
            ALV++L +    +    +T + +L       +  +   G L  ++ L+   +       
Sbjct: 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160

Query: 258 TISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVPEVRQML 315
           T  LQ L+  + E    I+  GG + L+ I +T          +  LK +S     +  +
Sbjct: 161 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 220

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
            E G +  +   L         +     L+NL+ +          EG + +L+  L    
Sbjct: 221 VEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDD 276

Query: 376 P--QESAVGALRNLV--GSVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVCT 429
                 A G L NL      ++ ++  +G    LV  +          + A  AL  + +
Sbjct: 277 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336

Query: 430 SAEM----KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
             +     +  V      P+++KLL    +     A   +   + L        R+  ++
Sbjct: 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 396

Query: 486 PNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSE 535
           P LVQLL        ++            +  +   I  G  G L  L+ 
Sbjct: 397 PRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 445

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 98.5 bits (245), Expect = 7e-22
 Identities = 46/244 (18%), Positives = 80/244 (32%), Gaps = 25/244 (10%)

Query: 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREK-TVTVICSLAESGSCENW 232
           AL  L    +E E    AV     +  +V+LL   S     K TV +I +LA   +    
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 389

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATIS----------------------LQRLSMSAEM 270
           L  +G +P L++L+       + + ++                       L  L+     
Sbjct: 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN 449

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC 330
              I G   +   +++  +     Q  AA  L  ++   E  + +  EG  + + +LL  
Sbjct: 450 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 509

Query: 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGS 390
               G   YAA  L  ++       +  +S     SL          E+A   L      
Sbjct: 510 RNE-GVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAW-NETADLGLDIGAQG 567

Query: 391 VSQE 394
               
Sbjct: 568 EPLG 571

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 76.9 bits (189), Expect = 5e-15
 Identities = 42/245 (17%), Positives = 67/245 (27%), Gaps = 29/245 (11%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIR----- 213
           ++  L         KA   L+  +     N   +  +  I  LVQLL       +     
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416

Query: 214 -----------------EKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEK 256
                            E     +  LA        +     +P  ++L+ S     +  
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 476

Query: 257 ATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQM 314
           A   L  L+   E A AI   G   PL E+  + +      AA  L  +S     + ++ 
Sbjct: 477 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP 374
           L+ E   S    L      +   E A   L           R             Y    
Sbjct: 537 LSVELTSS----LFRTEP-MAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDA 591

Query: 375 LPQES 379
           L  + 
Sbjct: 592 LGMDP 596

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  180 bits (458), Expect = 3e-50
 Identities = 73/416 (17%), Positives = 161/416 (38%), Gaps = 14/416 (3%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           +++     DAE  T     EL   L        +KA   + +  K++      +     +
Sbjct: 3   VNLINYQDDAELAT-RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 199 AALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
           +A+V+ +           T   + +L+        +   G +P L++++ S        A
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121

Query: 258 TISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQML 315
             +L  L +  E A+ A+   GG++ ++ +    +    A     L+ ++    E + ++
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
              G    ++ ++            +  L+ L+  + N + ++V  GG+++L  +L  P 
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPS 240

Query: 376 P--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAE 432
               ++ +  LRNL  + +++  +  G    LV +L +  +     AA  L  +   + +
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299

Query: 433 MKKLVGEAGCTPLLIKLLEAKPNS--VREVAAQAISSLVTLPQNCREVK---RDDKSVPN 487
            K +V + G    L++ +    +   + E A  A+  L +  Q     +   R    +P 
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

Query: 488 LVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARK 543
           +V+LL P       K  V  + +L+        +   GAI  L +L        ++
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  163 bits (414), Expect = 4e-44
 Identities = 67/368 (18%), Positives = 138/368 (37%), Gaps = 18/368 (4%)

Query: 178 LVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSE 236
           +V  +   +   LA      I  L +LL      +  K   ++  L+ +  S    + S 
Sbjct: 2   VVNLINYQDDAELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 237 GVLPPLIRLVESGSTVG-KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ 295
            ++  ++R +++ + V        +L  LS   E   AI   GG+  L+++  +      
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 296 AAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354
             A  TL N+       +  +   G +  M+ LL+    +       +CLQ L   N+  
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 177

Query: 355 RRSVVSEGGIRSLLAYLDGPLP---QESAVGALRNL-VGSVSQEVLISLGFFPRLVHVLK 410
           +  +++ GG ++L+  +          +    L+ L V S ++  ++  G    L   L 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 411 AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
             S    Q     L  +  +A   K  G  G    L++LL +   +V   AA  +S+L  
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 471 LPQNCREVKRDDKSVPNLVQLL-DPSPQNTAKKYAVACLASLS----PSKKCKKLMISYG 525
                + +      +  LV+ +     +    + A+  L  L+     ++  +  +  + 
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 526 AIGYLKKL 533
            +  + KL
Sbjct: 356 GLPVVVKL 363

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  148 bits (374), Expect = 1e-38
 Identities = 73/406 (17%), Positives = 151/406 (37%), Gaps = 36/406 (8%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           L +            G  ++++A L   +++      D L      ++++ L ++     
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 199 AALVQLLTATSPR-IREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
            ALV ++   +   +   T  V+  L+   S +  +V  G +  L   +   S    +  
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 258 TISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLA 316
             +L+ LS +A     +   G +  L+++  + D      AA  L N++    + + M+ 
Sbjct: 248 LWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305

Query: 317 EEGIVSVMIKLLDCGILLGS-KEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLD 372
           + G +  +++ +          E A   L++LT+     E  + +V    G+  ++  L 
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365

Query: 373 GPLP---QESAVGALRNLVGSVSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAA------- 421
            P      ++ VG +RNL    +    L   G  PRLV +L       Q+  +       
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

Query: 422 ---------------SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466
                           AL  +      + ++      PL ++LL +   +++ VAA  + 
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
            L    +    ++ +  +   L +LL  S       YA A L  +S
Sbjct: 486 ELAQDKEAAEAIEAEG-ATAPLTELLH-SRNEGVATYAAAVLFRMS 529

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  158 bits (400), Expect = 7e-43
 Identities = 67/353 (18%), Positives = 146/353 (41%), Gaps = 14/353 (3%)

Query: 152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSP 210
           T G     +  L+       + ++   L      +      V+    +   ++LL++   
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 211 RIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLSMS- 267
            ++E+ V  + ++A +S  C ++++   +LPPL++L    + +     A  +L  L    
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIK 326
           +           +  L  +    D+   A A   L  +S  P +  Q + + G+   +++
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGAL 384
           LL           A   + N+   ++   + +++   ++SLL  L  P    ++ A   +
Sbjct: 242 LLMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

Query: 385 RNLV-GSVSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEA 440
            N+  G+ +Q + +I    FP L+ +L+      ++ AA A+    +  SAE  K + E 
Sbjct: 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360

Query: 441 GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLD 493
           GC   L  LL    + + +VA   + +++ L +   E KR+   +     L++
Sbjct: 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ--EAKRNGTGINPYCALIE 411

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  137 bits (347), Expect = 2e-35
 Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 14/363 (3%)

Query: 184 EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLP 240
               N+    G    + +++++ + SP  +         L         +  + + GV+ 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 241 PLIR-LVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAA 298
             +  L    +   + ++   L  + S ++   R ++  G V   IE+  +     Q  A
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 299 ACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS 357
              L NI+      R  + +  I+  +++L      L     A   L NL          
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187

Query: 358 VVSEGGIRSL--LAYLDGPLPQESAVGALRNLVGSVS--QEVLISLGFFPRLVHVLKAGS 413
                 +  L  L ++        A  AL  L    +   + +I  G   RLV +L    
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247

Query: 414 LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472
                 A  A+  + T      +++        L+ LL +   S+++ A   IS++    
Sbjct: 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307

Query: 473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--PSKKCKKLMISYGAIGYL 530
           +   +   D    P L+ +L  + +   +K A   + + +   S +  K ++  G I  L
Sbjct: 308 RAQIQTVIDANIFPALISILQ-TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPL 366

Query: 531 KKL 533
             L
Sbjct: 367 CDL 369

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  117 bits (295), Expect = 1e-28
 Identities = 52/294 (17%), Positives = 105/294 (35%), Gaps = 11/294 (3%)

Query: 260 SLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV---PEVRQMLA 316
           ++              G      +IE+  +     Q +A    + + +    P + ++++
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP 376
             G+V+  ++ L        +  +A  L N+ + N    R V+  G +   +  L     
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 377 --QESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS- 430
             QE AV AL N+ G  +   + ++     P L+ +      L   + A  AL  +C   
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 431 AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ 490
           +   +    + C  +L  LL      V   A  A+S L   P +  +   D      LV+
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 491 LLDPSPQNTAKKYAVACLASLSP-SKKCKKLMISYGAIGYLKKLSEMDIPGARK 543
           LL           A+  + ++        +++++  A+  L  L        +K
Sbjct: 242 LLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 5/179 (2%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L     +    AL ++   +  D+     ++  S + +L+ LL++    I+++   
Sbjct: 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298

Query: 219 VICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAI 274
            I ++  +G+      ++   + P LI ++++     +++A  ++   +   SAE  + +
Sbjct: 299 TISNIT-AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYL 357

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL 333
           V  G ++PL ++    DS     A   L+NI  + E        GI      + +   L
Sbjct: 358 VELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  135 bits (342), Expect = 1e-36
 Identities = 53/245 (21%), Positives = 105/245 (42%), Gaps = 8/245 (3%)

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGD 291
                 LP + + + S     +  AT    ++ S   E  +A++  G +  L+++  + +
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 292 SVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350
                 A   L NI++   E  Q + + G +  +++LL         + A   L N+ + 
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASG 126

Query: 351 NENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL--VGSVSQEVLISLGFFPRLV 406
                ++V+  G + +L+  L  P     + A+ AL N+   G+   + +I  G  P LV
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186

Query: 407 HVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
            +L + +    Q A  AL  + +   E K+ V EAG    L +L   +   +++ A +A+
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246

Query: 466 SSLVT 470
             L +
Sbjct: 247 EKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  114 bits (288), Expect = 4e-29
 Identities = 47/237 (19%), Positives = 106/237 (44%), Gaps = 8/237 (3%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV 217
           ++  +L    ++ +  A     + + +  + + AV+    + ALVQLL++ + +I ++ +
Sbjct: 16  QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

Query: 218 TVICSLAESGSCENW--LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAI 274
             + ++A SG  E    ++  G LP L++L+ S +    ++A  +L  ++    E  +A+
Sbjct: 76  WALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGIL 333
           +  G +  L+++  + +      A   L NI++   E  Q + + G +  +++LL     
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN- 193

Query: 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLV 388
               + A   L N+ +     +++V   G +  L           Q+ A  AL  L 
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 7/185 (3%)

Query: 355 RRSVVSEGGIRSLLAYL--DGPLPQESAVGALRNL--VGSVSQEVLISLGFFPRLVHVLK 410
                    +  +   L  D    Q SA      +   G+   + +I  G  P LV +L 
Sbjct: 5   HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS 64

Query: 411 AGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469
           + +    Q A  AL  + +   E  + V +AG  P L++LL +    + + A  A+S++ 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-SKKCKKLMISYGAIG 528
           +      +   D  ++P LVQLL  SP     + A+  L++++    +  + +I  GA+ 
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183

Query: 529 YLKKL 533
            L +L
Sbjct: 184 ALVQL 188

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLL 450
           S          P++   L +  +  Q +A     ++ +   E  + V +AG  P L++LL
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 451 EAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510
            +    + + A  A+S++ +      +   D  ++P LVQLL  SP     + A+  L++
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSN 122

Query: 511 LS-PSKKCKKLMISYGAIGYL 530
           ++    +  + +I  GA+  L
Sbjct: 123 IASGGNEQIQAVIDAGALPAL 143

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 23/160 (14%)

Query: 170 AKHKALDSLVEAMKEDEKNVL--AVMGRSNIAA-----------------LVQLLTATSP 210
               AL +LV+ +    + +L  A+   SNIA+                 LVQLL++ + 
Sbjct: 93  IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152

Query: 211 RIREKTVTVICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-S 267
           +I ++ +  + ++A SG  E    ++  G LP L++L+ S +    ++A  +L  ++   
Sbjct: 153 QILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211

Query: 268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
            E  +A+   G +  L ++    +   Q  A   L+ + +
Sbjct: 212 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  133 bits (336), Expect = 1e-34
 Identities = 52/312 (16%), Positives = 110/312 (35%), Gaps = 28/312 (8%)

Query: 185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR 244
           +            +      + A         V V+  L+      + +   G L  +  
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 245 LVESGSTVG-----------KEKATISLQRLSMSAEMARAIV--GHGGVRPLIEICQTGD 291
           L++    +            +  A ++L  L+      +A +    G +R L+   ++  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 292 SVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
              Q   A  L+N+S  A    ++ L E G V  +++         + +     L NL+A
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 350 SNENLRRSVVSE-GGIRSLLAYLDGPLP------QESAVGALRNLVGSVS-----QEVLI 397
                +  + +  G +  L+  L            ES  G LRN+   ++     +++L 
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260

Query: 398 SLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNS 456
                  L+  LK+ SL     A   L  +   + + ++ + + G   +L  L+ +K   
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 320

Query: 457 VREVAAQAISSL 468
           +   +A A+ +L
Sbjct: 321 IAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  127 bits (321), Expect = 1e-32
 Identities = 59/308 (19%), Positives = 103/308 (33%), Gaps = 28/308 (9%)

Query: 263 RLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS 322
           R               G+                 A C L  +S   E R  + E G + 
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQ 76

Query: 323 VMIKLLDCGILLGS----------KEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL 371
            + +LL     +            + YA   L NLT  +   + ++ S +G +R+L+A L
Sbjct: 77  AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 136

Query: 372 DGPLP--QESAVGALRNLVGSVSQE---VLISLGFFPRLVHVL-KAGSLGAQQAAASAL- 424
                  Q+     LRNL           L  +G    L+    +       ++  SAL 
Sbjct: 137 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 196

Query: 425 -CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNS----VREVAAQA---ISSLVTLPQNCR 476
                 +     +    G    L+  L  +  +    + E        +SSL+   ++ R
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256

Query: 477 EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS-PSKKCKKLMISYGAIGYLKKLSE 535
           ++ R++  +  L+Q L  S   T    A   L +LS  + K ++ +   GA+  LK L  
Sbjct: 257 QILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315

Query: 536 MDIPGARK 543
                   
Sbjct: 316 SKHKMIAM 323

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  101 bits (252), Expect = 2e-23
 Identities = 54/317 (17%), Positives = 114/317 (35%), Gaps = 31/317 (9%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMGRSNIAALVQLL------ 205
                +    +          A+  L++ +  E+ ++ +  +G   + A+ +LL      
Sbjct: 31  EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG--GLQAIAELLQVDCEM 88

Query: 206 -----TATSPRIREKTVTVICSLA--ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKAT 258
                   S  +R      + +L   +  +       +G +  L+  ++S S   ++   
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 259 ISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVPE--VRQ 313
             L+ LS        + +   G V+ L+E        S   +    L N+SA        
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208

Query: 314 MLAEEGIVSVMIKLL---DCGILLGSKEYAAECLQNLT---ASNENLRRSVVSEGGIRSL 367
           + A +G ++ ++  L        L   E     L+N++   A+NE+ R+ +     +++L
Sbjct: 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268

Query: 368 LAYLDGPLP--QESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA 423
           L +L         +A G L NL       QE L  +G    L +++ +        +A+A
Sbjct: 269 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328

Query: 424 LCRVCTSAEMKKLVGEA 440
           L  +  +   K      
Sbjct: 329 LRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 15/164 (9%)

Query: 384 LRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCT 443
           +R    +  +          +  + + A        A   L ++    E +  + E G  
Sbjct: 16  IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGL 75

Query: 444 PLLIKLLEAKPN-----------SVREVAAQAISSL-VTLPQNCREVKRDDKSVPNLVQL 491
             + +LL+               ++R  A  A+++L      N   +      +  LV  
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 492 LDPSPQNTAKKYAVACLASLS--PSKKCKKLMISYGAIGYLKKL 533
           L  S     ++   + L +LS       KK +   G++  L + 
Sbjct: 136 LK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENW 232
            L ++   +  +E +   +   + +  L+Q L + S  I       + +L A +   +  
Sbjct: 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM---ARAIVGHGGVRP 282
           L   G +  L  L+ S   +    +  +L+ L  +         I+  G   P
Sbjct: 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  128 bits (323), Expect = 6e-32
 Identities = 68/392 (17%), Positives = 134/392 (34%), Gaps = 17/392 (4%)

Query: 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW- 232
           A     +              +  +  + Q L +   + +         +          
Sbjct: 65  ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124

Query: 233 -LVSEGVLPPLIRLVESGSTVG-KEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT 289
            ++  GV+P L+  +        + +A  +L  + S ++   + +V    V   I++  T
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184

Query: 290 GDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348
           G    +  A   L N++    + R  + +   +  ++ L +          A   L NL 
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLC 243

Query: 349 ASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPR 404
              +      V    + +L   +          A  A+  L        + +I +    R
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303

Query: 405 LVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463
           LV +L   S   Q  A  A+  + T +    ++V  AG  P L  LL +   ++++ A  
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363

Query: 464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS----PSKKCKK 519
            IS++        +   D   +P LV+LL+   +   KK A   +++ S          +
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIR 422

Query: 520 LMISYGAIGYLKK-LSEMDIPGARKLLERLER 550
            ++S G I  L   L   D       L+ LE 
Sbjct: 423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  103 bits (258), Expect = 1e-23
 Identities = 62/335 (18%), Positives = 120/335 (35%), Gaps = 23/335 (6%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI 212
                  +  L  G +E K +A+ +L     +       V+  + +  ++ L  +  P +
Sbjct: 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL 231

Query: 213 REKTVTVICSLAESGSCE-NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEM 270
                  + +L      + +W V    LP L +L+ S  T     A  ++  LS    E 
Sbjct: 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA 291

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLD 329
            +A++     + L+E+     ++ Q  A   + NI        Q++   G++  +  LL 
Sbjct: 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351

Query: 330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL 387
                  KE A   + N+TA N    ++V+    I  L+  L+      ++ A  A+ N 
Sbjct: 352 SPKENIKKE-ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410

Query: 388 VGSVSQ-----EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK------- 435
                Q       L+S G    L  +L+       +    AL  +    E  K       
Sbjct: 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 470

Query: 436 -----LVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
                 + +AG    +    + + + + E A + I
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 37/211 (17%), Positives = 82/211 (38%), Gaps = 8/211 (3%)

Query: 131 VLGEATLPLS--VAGSSTDAEATTHGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDEK 187
            L +A   +S    G     +A       + L  L        +  AL ++   +  ++ 
Sbjct: 273 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 332

Query: 188 NVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENWLVSEGVLPPLIRLV 246
               V+    + AL  LL++    I+++    I ++ A +      ++   ++PPL++L+
Sbjct: 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392

Query: 247 ESGSTVGKEKATISLQRLSM----SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL 302
           E      K++A  ++   S       ++ R +V  G ++PL ++ +  D+         L
Sbjct: 393 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452

Query: 303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGIL 333
           +NI  + E  +      I      +   G +
Sbjct: 453 ENILKMGEADKEARGLNINENADFIEKAGGM 483

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  126 bits (319), Expect = 8e-32
 Identities = 71/412 (17%), Positives = 134/412 (32%), Gaps = 65/412 (15%)

Query: 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES------- 248
           + +  +  LL+      ++     + +++ S      +   G LP LI+L+         
Sbjct: 29  TKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVL 88

Query: 249 -----GSTVGKEKATISLQRLSMS-------------------------AEMARAIVGHG 278
                GS   + +A+ +L  +  S                                    
Sbjct: 89  LGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148

Query: 279 GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGS-- 336
           G+                 A C L  +S   E R  + E G +  + +LL     +    
Sbjct: 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208

Query: 337 --------KEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDGPLP--QESAVGALR 385
                   + YA   L NLT  +   + ++ S +G +R+L+A L       Q+     LR
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268

Query: 386 NLVGSVSQE---VLISLGFFPRLVHVL-KAGSLGAQQAAASAL--CRVCTSAEMKKLVGE 439
           NL           L  +G    L+    +       ++  SAL       +     +   
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328

Query: 440 AGCTPLLIKLLEAKPNSVREVAAQA-------ISSLVTLPQNCREVKRDDKSVPNLVQLL 492
            G    L+  L  +  +      ++       +SSL+   ++ R++ R++  +  L+Q L
Sbjct: 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388

Query: 493 DPSPQNTAKKYAVACLASLS-PSKKCKKLMISYGAIGYLKKLSEMDIPGARK 543
             S   T    A   L +LS  + K ++ +   GA+  LK L          
Sbjct: 389 K-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 439

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  106 bits (267), Expect = 5e-25
 Identities = 56/357 (15%), Positives = 115/357 (32%), Gaps = 59/357 (16%)

Query: 185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR 244
           +            +      + A         V V+  L+      + +   G L  +  
Sbjct: 137 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 196

Query: 245 LVESGSTVG-----------KEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQTGD 291
           L++    +            +  A ++L  L+      +A +    G +R L+   ++  
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256

Query: 292 SVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
              Q   A  L+N+S  A    ++ L E G V  +++         + +     L NL+A
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316

Query: 350 SNENLRRSVVSE-GGIRSLLAYLDGPLP------QESAVGALRNLVGSVSQEVLISLGFF 402
                +  + +  G +  L+  L            ES  G LRN+               
Sbjct: 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV--------------- 361

Query: 403 PRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA 462
                              S+L    T+ + ++++ E  C   L++ L++   ++   A 
Sbjct: 362 -------------------SSLI--ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400

Query: 463 QAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK 519
             + +L       +E   D  +V  L  L+  S        + A L +L  ++  K 
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 83.1 bits (205), Expect = 4e-17
 Identities = 41/306 (13%), Positives = 91/306 (29%), Gaps = 40/306 (13%)

Query: 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312
                  S   +   + M         V  +  +     +  +   + TL  +S+  +  
Sbjct: 4   SHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSC 63

Query: 313 QMLAEEGIVSVMIKLLDCGILLGS-----------KEYAAECLQNLTASNENLRRSVVSE 361
             + + G + ++I+LL                   +  A+  L N+  S  + +R     
Sbjct: 64  ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI 123

Query: 362 GGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA 421
             +  L                +R    +  +          +  + + A        A 
Sbjct: 124 RVLHLL--------------EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169

Query: 422 SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPN-----------SVREVAAQAISSL-V 469
             L ++    E +  + E G    + +LL+               ++R  A  A+++L  
Sbjct: 170 CVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229

Query: 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--PSKKCKKLMISYGAI 527
               N   +      +  LV  L  S     ++   + L +LS       KK +   G++
Sbjct: 230 GDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288

Query: 528 GYLKKL 533
             L + 
Sbjct: 289 KALMEC 294

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 81.2 bits (200), Expect = 2e-16
 Identities = 32/211 (15%), Positives = 84/211 (39%), Gaps = 14/211 (6%)

Query: 159 LLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKT 216
           L+A+L+    + +      L   + + D  +   +    ++ AL++           +  
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 217 VTVICSLAESGSCENWLVSE--GVLPPLIRLV----ESGSTVGKEKATISLQRLSM---- 266
           ++ + +L+   +     +    G L  L+  +    ++ +    E     L+ +S     
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMI 325
           + +  + +  +  ++ L++  ++      + A  TL N+SA  P+ ++ L + G VS++ 
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427

Query: 326 KLLDCGILLGSKEYAAECLQNLTASNENLRR 356
            L+           +A  L+NL A+     +
Sbjct: 428 NLIHSKHK-MIAMGSAAALRNLMANRPAKYK 457

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  125 bits (315), Expect = 5e-31
 Identities = 65/325 (20%), Positives = 124/325 (38%), Gaps = 17/325 (5%)

Query: 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLS--MSAEMARAIVGHGGVRPLIEICQTGD 291
                +  +++ + S +   + +AT + ++L           I+  G +   +      D
Sbjct: 54  TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113

Query: 292 SVS-QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
               Q  +A  L NI++   E  + + + G +   I LL         E A   L N+  
Sbjct: 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAG 172

Query: 350 SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQ---------EVLISLG 400
                R  V+  G I  LLA L  P     A G LRNL  ++S           +     
Sbjct: 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232

Query: 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
             P LV +L          +  A+  +     E  ++V + G  P L+KLL A    +  
Sbjct: 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292

Query: 460 VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL-SPSKKCK 518
            A +AI ++VT      +   D  ++     LL  +P+   +K A   ++++ +  +   
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI 351

Query: 519 KLMISYGAIGYLKKLSEMDIPGARK 543
           + ++++G + +L  +        +K
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQK 376

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  122 bits (308), Expect = 5e-30
 Identities = 63/388 (16%), Positives = 144/388 (37%), Gaps = 18/388 (4%)

Query: 180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW--LVSEG 237
           +     +          ++  +V+ + + +   + +       L           ++  G
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 238 VLPPLIR-LVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQ 295
           ++P  +  L ++  +  + ++  +L  + S ++E  +A+V  G +   I +  +  +   
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 296 AAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCG----ILLGSKEYAAECLQNLTAS 350
             A   L NI+      R ++ + G +  ++ LL       +  G        L NL  +
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 351 NENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLV 406
                     E  + +L+  L    P     +  A+  L    +   E+++  G  P+LV
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280

Query: 407 HVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
            +L A  L     A  A+  + T + E  + V +AG   +   LL     ++++ A   +
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340

Query: 466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--PSKKCKKLMIS 523
           S++    Q+  +   +   VP LV  +        +K A   + + +   + +    ++ 
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399

Query: 524 YGAIGYLKK-LSEMDIPGARKLLERLER 550
            G I  L   LS  D    + +L+ +  
Sbjct: 400 CGIIEPLMNLLSAKDTKIIQVILDAISN 427

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  113 bits (283), Expect = 8e-27
 Identities = 62/328 (18%), Positives = 115/328 (35%), Gaps = 21/328 (6%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
            ++ L   H     +A+ +L     +       V+    I  L+ LL             
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207

Query: 219 VICSLAESGSCEN------WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMA 271
              +   S  C N          E +LP L+RL+          +  ++  L+    E  
Sbjct: 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267

Query: 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDC 330
             +V  G V  L+++    +      A   + NI     E  Q + + G ++V   LL  
Sbjct: 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327

Query: 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLV 388
                 ++ A   + N+TA  ++  + VV+ G +  L+  L       Q+ A  A+ N  
Sbjct: 328 PK-TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386

Query: 389 GSVSQE---VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE-------MKKLVG 438
              + E    L+  G    L+++L A      Q    A+  +  +AE       +  ++ 
Sbjct: 387 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446

Query: 439 EAGCTPLLIKLLEAKPNSVREVAAQAIS 466
           E G    +  L   +  SV + +   I 
Sbjct: 447 ECGGLDKIEALQRHENESVYKASLNLIE 474

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 77.0 bits (189), Expect = 5e-15
 Identities = 42/242 (17%), Positives = 91/242 (37%), Gaps = 15/242 (6%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L     E    +  ++        + +  V+ +  +  LV+LL AT   I    + 
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 219 VICSLAESGSCENW--LVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIV 275
            I ++  +G+ E    ++  G L     L+ +  T  +++AT ++  + +   +  + +V
Sbjct: 297 AIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355

Query: 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGIL 333
            HG V  L+ +    D  +Q  AA  + N +     E    L   GI+  ++ LL     
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-D 414

Query: 334 LGSKEYAAECLQNL------TASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALR 385
               +   + + N+          E L   +   GG+  + A          ++++  + 
Sbjct: 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474

Query: 386 NL 387
             
Sbjct: 475 KY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 65.8 bits (160), Expect = 2e-11
 Identities = 33/217 (15%), Positives = 82/217 (37%), Gaps = 19/217 (8%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L    L     AL ++   +   ++    V+    +A    LLT     I+++   
Sbjct: 279 LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 219 VICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAI 274
            + ++  +G  +    +V+ G++P L+ ++       +++A  ++   +   + E    +
Sbjct: 339 TMSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNI-------SAVPEVRQMLAEEGIVSVMIKL 327
           V  G + PL+ +    D+         + NI           ++  M+ E G +  +  L
Sbjct: 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457

Query: 328 LDCG---ILLGSKEYAAECLQNLTASNENLRRSVVSE 361
                  +     + +   ++   +  E   ++VV E
Sbjct: 458 QRHENESV----YKASLNLIEKYFSVEEEEDQNVVPE 490

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  122 bits (306), Expect = 2e-29
 Identities = 60/339 (17%), Positives = 127/339 (37%), Gaps = 12/339 (3%)

Query: 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICS 222
           +++     +H   +  ++ +    K +  +       AL  L    S   +E    V+ +
Sbjct: 462 IELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNA 521

Query: 223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG---HGG 279
           +         +V EG +  L+R+   G+  GK  AT +L R+ ++     +  G      
Sbjct: 522 VCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDV 581

Query: 280 VRPLIEICQTGDS-VSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSK 337
           +RPL+ + Q   + +    +   L N++++   VRQ + +E  VS +   L    L    
Sbjct: 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY-LT 640

Query: 338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGS---VS 392
             AA+CL NL  S + ++    +   ++ L    +        +  GAL  +        
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700

Query: 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE 451
           +++L    +   L  ++   S   Q      +  +     E+ K + E     LL  L +
Sbjct: 701 EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760

Query: 452 AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ 490
              ++  +    A   L    +     + D+  +P++  
Sbjct: 761 LPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  119 bits (300), Expect = 1e-28
 Identities = 71/391 (18%), Positives = 140/391 (35%), Gaps = 18/391 (4%)

Query: 169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228
           + +  A D L     + E     +  +++I AL+ L    +       VT   +L  +  
Sbjct: 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453

Query: 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ 288
            +       +LP +I L +       E+    L  +    +    +   G    L  + +
Sbjct: 454 KQE------MLPEMIELAKFAKQHIPEEHE--LDDVDFINKRITVLANEGITTALCALAK 505

Query: 289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348
           T    SQ   A  L  +  + E+R  + +EG V  ++++   G   G K +A + L  + 
Sbjct: 506 TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG-KRHATQALARIG 564

Query: 349 ASNEN--LRRSVVSEGGIRSLLAYLDGP---LPQESAVGALRNLVG--SVSQEVLISLGF 401
            +           S   IR LL  L      L    ++ AL NL       ++ +I    
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQG 624

Query: 402 FPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLLIKLLEAKPNSVREV 460
             ++ + L    L   +AAA  LC +  S + +K   G       L  L E +       
Sbjct: 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATA 684

Query: 461 AAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL-SPSKKCKK 519
            A A++ + ++   C E      S  +++  L  +P    +   +  + ++ +  ++  K
Sbjct: 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAK 744

Query: 520 LMISYGAIGYLKKLSEMDIPGARKLLERLER 550
            +     +  L  L ++      K  E   +
Sbjct: 745 KLFETDIMELLSGLGQLPDDTRAKAREVATQ 775

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 49/332 (14%), Positives = 95/332 (28%), Gaps = 48/332 (14%)

Query: 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL------KNISA 307
           +  A  +L  L+     A  +     +  +  + +             L       ++  
Sbjct: 25  RRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84

Query: 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS------- 360
              V   L     + V+ +  +          A  CLQ +  +   L+    S       
Sbjct: 85  TKGVLTELGVPWFMRVLDQKHE-----NCVSTAQFCLQTILNALSGLKNKPDSKPDKELC 139

Query: 361 ---EGGIRSLLAYLDGPLPQESAVGALRNLV-----------GSVSQEVLISLGFFPRLV 406
                 I +LL  L   +   +  GA R+ V                E L+ +    RL+
Sbjct: 140 TRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLL 199

Query: 407 HVLKAG-----------SLGAQQAAASALCRVCTSAEMK--KLVGEAGCTPLLIKLLEAK 453
            V               +  +   A+  L R+  +      K          +   L A 
Sbjct: 200 DVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAP 259

Query: 454 PNSVREVAAQAISSL-VTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
               +     AI++L         +V   +  +  ++ +   +     ++ A  CL + S
Sbjct: 260 DMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMA-TTDDELQQRVACECLIAAS 318

Query: 513 PSKKCKKLMISYGAIGYLKKLSEMDIPGARKL 544
             K   K +   G +  LK+L      G R  
Sbjct: 319 SKKDKAKALCEQG-VDILKRLYHSKNDGIRVR 349

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  112 bits (280), Expect = 1e-26
 Identities = 55/379 (14%), Positives = 129/379 (34%), Gaps = 43/379 (11%)

Query: 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKE 255
            I   VQ L++   + +      I          +  +   G +  L+ L+ S +   ++
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 256 KATISLQRLSM-SAEMARAIVGHGGVRPLIE-ICQTGDSVSQAAAACTLKNISAVPEVRQ 313
            A  +L+ L   S           G+R  +  + +TG++  Q      L N+S+  E+++
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 314 MLAEEGIVSVMIKLLDCGILLGS--------------KEYAAECLQNLTASNENLRRSVV 359
            L  + +  +  +++                         A  CL+NL++++   +    
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 360 SEGGIRSLLAYLDGPLPQ-ESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGA-- 416
             G I SL+AY+   +        ++ N +  +           P     L+  +  A  
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 417 ----------------QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLL-EAKPNSVRE 459
                                  L    T+ +    +  +      + L+ ++K ++  E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 460 VAAQAISSLVTLPQN-----CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514
             A A+ +L            + +   +K +P + +LL  S  +   +   + L+++S  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLSNMSRH 361

Query: 515 KKCKKLMISYGAIGYLKKL 533
               ++M +       + L
Sbjct: 362 PLLHRVMGNQVFPEVTRLL 380

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 96.1 bits (238), Expect = 2e-21
 Identities = 56/427 (13%), Positives = 130/427 (30%), Gaps = 52/427 (12%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV 217
           + +  L     + +      +     +DE     V     I  LV LL + +  +++   
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 218 TVICSLA--ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275
             + +L    + +        G+   +  L  +G+   +++ T  L  LS + E+   ++
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 276 GHGGVRPLIE----------------ICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE- 318
               +  L +                  +  D      A   L+N+S+    RQ +    
Sbjct: 126 -ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

Query: 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQE 378
           G++  ++  +   +     +  +         N + R         R L         ++
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244

Query: 379 SAVGALRNLVGSVSQE-----------------VLISLGFFPRLVHVLKAGSLGAQQAAA 421
           S+ G   N    +                     L         ++++      A   A 
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304

Query: 422 SALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474
           +   +  T+          + +  +    P + +LL++  + V    A  +S++   P  
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364

Query: 475 CREVKRDDKSVPNLVQLLDPSPQNT-----AKKYAVACLASLS-PSKKCKKLMISYGAIG 528
            R +   ++  P + +LL     NT         A   + +L     +  K   S   + 
Sbjct: 365 HRVM--GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 529 YLKKLSE 535
            +  L  
Sbjct: 423 NIINLCR 429

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 57/410 (13%), Positives = 135/410 (32%), Gaps = 48/410 (11%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTV 217
           L+  L+  +   +  A  +L   +     N L    ++ I   V LL  T +  I+++  
Sbjct: 49  LVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT 108

Query: 218 TVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKE----------------KATISL 261
            ++ +L+ +       +    LP L   V    +   +                 AT  L
Sbjct: 109 GLLWNLSSTDEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167

Query: 262 QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIV 321
           + LS +    + +  + G+   +         +      +++N   V        +  + 
Sbjct: 168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227

Query: 322 SVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV------------------VSEGG 363
           +   +L        +++ +  C  N +    N                        +   
Sbjct: 228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 364 IRSLLAYLDGPLPQESAVGALRNLV-------GSVSQEVLISLGFFPRLVHVLKAGSLGA 416
             +L+         E+  GAL+NL          +SQ + +     P++  +L++G+   
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347

Query: 417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNS-----VREVAAQAISSLVTL 471
            ++ AS L  +     + +++G      +   L     N+     +   A   + +L+  
Sbjct: 348 VRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS 407

Query: 472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM 521
                +       + N++ L   S    A + A   L+ +  SK+ + ++
Sbjct: 408 QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 2/149 (1%)

Query: 403 PRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461
           P+ V  L +     Q   A  +   C      K+ V + G    L+ LL +   +V++ A
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 462 AQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM 521
           A A+ +LV      +   R    +   V LL  +     +K     L +LS + + K+ +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 522 ISYGAIGYLKKLSEMDIPGARKLLERLER 550
           I+  A+  L     +   G       + R
Sbjct: 125 IA-DALPVLADRVIIPFSGWCDGNSNMSR 152

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  105 bits (264), Expect = 3e-26
 Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 8/196 (4%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENW--LVSEGVLPPLIRLVESGSTVGKE 255
           +  +VQ L +   +  +  +  +  +A SG  E    ++  G LP L++L+ S +    +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 256 KATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQ 313
           +A  +L  ++    E  +A++  G +  L+++  + +      A   L NI++   E  Q
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373
            + + G +  +++LL         + A   L N+ +     +++V   G +  L      
Sbjct: 133 AVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191

Query: 374 PLP--QESAVGALRNL 387
                Q+ A  AL  L
Sbjct: 192 ENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  102 bits (257), Expect = 3e-25
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 7/199 (3%)

Query: 278 GGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGS 336
             +  +++   + D     +A   L  I++   E  Q + + G +  +++LL        
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 70

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL-VGSVSQ 393
            + A   L N+ +      ++V+  G + +L+  L  P     + A+ AL N+  G   Q
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 394 -EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE 451
            + +I  G  P LV +L + +    Q A  AL  + +   E K+ V EAG    L +L  
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190

Query: 452 AKPNSVREVAAQAISSLVT 470
            +   +++ A +A+  L +
Sbjct: 191 HENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  101 bits (255), Expect = 5e-25
 Identities = 37/203 (18%), Positives = 85/203 (41%), Gaps = 7/203 (3%)

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGD 291
                 LP +++ + S      + A   L +++    E  +A++  G +  L+++  + +
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 292 SVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350
                 A   L NI++   E  Q + + G +  +++LL         + A   L N+ + 
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG 126

Query: 351 NENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL--VGSVSQEVLISLGFFPRLV 406
                ++V+  G + +L+  L  P     + A+ AL N+   G+  ++ +   G   +L 
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186

Query: 407 HVLKAGSLGAQQAAASALCRVCT 429
            +    +   Q+ A  AL ++ +
Sbjct: 187 QLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  100 bits (251), Expect = 2e-24
 Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 7/206 (3%)

Query: 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL 371
                    +  M++ L+        + A   L  + +      ++V+  G + +L+  L
Sbjct: 5   HHHHHHGSELPQMVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 372 DGPLP--QESAVGALRNLV-GSVSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427
             P     + A+ AL N+  G   Q + +I  G  P LV +L + +    Q A  AL  +
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 428 CT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
            +   E  + V +AG  P L++LL +    + + A  A+S++ +     ++  ++  ++ 
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 487 NLVQLLDPSPQNTAKKYAVACLASLS 512
            L QL         +K A   L  L 
Sbjct: 184 KLEQLQS-HENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLL 450
                      P++V  L +      Q+A   L ++ +   E  + V +AG  P L++LL
Sbjct: 5   HHHHHHG-SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 451 EAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510
            +    + + A  A+S++ +      +   D  ++P LVQLL  SP     + A+  L++
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSN 122

Query: 511 LSP-SKKCKKLMISYGAIGYL 530
           ++    +  + +I  GA+  L
Sbjct: 123 IASGGNEQIQAVIDAGALPAL 143

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 23/160 (14%)

Query: 170 AKHKALDSLVEAMKEDEKNVL--AVMGRSNIAA-----------------LVQLLTATSP 210
               AL +LV+ +    + +L  A+   SNIA+                 LVQLL++ + 
Sbjct: 51  IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110

Query: 211 RIREKTVTVICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMS 267
           +I ++ +  + ++A SG  E    ++  G LP L++L+ S +    ++A  +L  + S  
Sbjct: 111 QILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169

Query: 268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
            E  +A+   G +  L ++    +   Q  A   L+ + +
Sbjct: 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L   + +   +AL +L        + + AV+    + ALVQLL++ + +I ++ + 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160

Query: 219 VICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265
            + ++A  G+  +  +   G L  L +L    +   +++A  +L++L 
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  102 bits (255), Expect = 3e-23
 Identities = 71/433 (16%), Positives = 143/433 (33%), Gaps = 46/433 (10%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
            S+                E++A L       K  A   L      ++K    V     I
Sbjct: 33  DSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGI 92

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGSCENWL--VSEGVLPPLIRLVESGSTVG-KE 255
             LV LL      +       + +++     +N +   +   +P L+RL+     +   E
Sbjct: 93  PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE 152

Query: 256 KATISLQRLSMSAEMARAIVGHGGVRPLIEI-----------------CQTGDSVSQAAA 298
             T +L  LS    +   IV H       E+                             
Sbjct: 153 VITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNT 212

Query: 299 ACTLKNISAVPEV--RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356
           A  L+N+S+      R++   +G+V  +I ++   I  G K+  ++ ++N      NL  
Sbjct: 213 AGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI--GQKDSDSKLVENCVCLLRNLSY 270

Query: 357 SVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSL-G 415
            V  E             +   +     R        E+L         + +LK      
Sbjct: 271 QVHREIPQAERYQEAAPNVANNTGTSPARG------YELLFQPEVVRIYISLLKESKTPA 324

Query: 416 AQQAAASALCRVC-----TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
             +A+A A+  +C         ++  + +      +  LL  +   V + A+ A+ +L  
Sbjct: 325 ILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384

Query: 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL--------SPSKKCKKLMI 522
             +N   +     ++PNLV+ L    QN++  ++   + S+        + + +  K + 
Sbjct: 385 DARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR 442

Query: 523 SYGAIGYLKKLSE 535
               I  L  +++
Sbjct: 443 ETQGIEKLVLINK 455

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 70.0 bits (170), Expect = 8e-13
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 18/219 (8%)

Query: 184 EDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLA-----ESGSCENWLVSEG 237
              +    +     +   + LL  + +P I E +   I +L            + L  E 
Sbjct: 296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355

Query: 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVS--- 294
            L  +  L+ +      + A+ +L+ L++ A   + ++G   +  L++    G   S   
Sbjct: 356 ALSAIADLLTNEHERVVKAASGALRNLAVDAR-NKELIGKHAIPNLVKNLPGGQQNSSWN 414

Query: 295 -----QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLG-SKEYAAECLQNL 347
                  +   T+  + A   E  + L E   +  ++ +   G         AA  LQ +
Sbjct: 415 FSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

Query: 348 TASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRN 386
               + LR+ +  EG  +S          +  +  +  +
Sbjct: 475 -WGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDD 512

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 70.0 bits (170), Expect = 9e-13
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 4/170 (2%)

Query: 362 GGIRSLLAYLDGPLPQE--SAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419
           G       Y   PL Q    ++ +L +L               P ++ +L       +  
Sbjct: 8   GEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSN 67

Query: 420 AASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN-CRE 477
           AA+ L  +C  + ++K  V +    P+L+ LL+     V   A  A+ ++        + 
Sbjct: 68  AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127

Query: 478 VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAI 527
             ++   VP LV+LL  +      +     L +LS     K  ++ +   
Sbjct: 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALH 177

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 69.6 bits (169), Expect = 1e-12
 Identities = 54/322 (16%), Positives = 110/322 (34%), Gaps = 37/322 (11%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
           + AL+ ++ A   +    +  V          EN +     L   +      +   +E A
Sbjct: 237 VDALIFIVQAEIGQKDSDSKLV----------ENCVCLLRNLSYQVHREIPQAERYQEAA 286

Query: 258 TISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAV-----PE 310
                    S       +     VR  I + +   + +   A+A  ++N+ A        
Sbjct: 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY 346

Query: 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY 370
           +R  L +E  +S +  LL         + A+  L+NL     N  + ++ +  I +L+  
Sbjct: 347 IRSALRQEKALSAIADLLTNEHE-RVVKAASGALRNLAVDARN--KELIGKHAIPNLVKN 403

Query: 371 LDGPLPQE----------SAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAGSLG--A 416
           L G               S +  +  ++    +  + L       +LV + K+G+     
Sbjct: 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKE 463

Query: 417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCR 476
            +AAA  L  +    E++K + + G      ++     +  +   +   S   TLP   R
Sbjct: 464 VRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDS---TLPLIDR 520

Query: 477 EVKRDDKSVPNLVQLLDPSPQN 498
             K D K     +Q+ +     
Sbjct: 521 NQKSDKKPDREEIQMSNMGSNT 542

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 68.4 bits (166), Expect = 2e-12
 Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 9/244 (3%)

Query: 255 EKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQ 313
           E+ +++                   +  +I +        ++ AA  L+++     +V+ 
Sbjct: 25  ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT 84

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT-ASNENLRRSVVSEGGIRSLLAYL- 371
            + +   + V++ LLD          A   L+N++   +++ + ++ +  G+ +L+  L 
Sbjct: 85  DVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR 143

Query: 372 --DGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429
                   E   G L NL    S ++ I       L   +     G ++      C+   
Sbjct: 144 KARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNED-CKPRH 202

Query: 430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV-KRDDKSVPNL 488
                 L   AGC   +          +RE     + +L+ + Q        D K V N 
Sbjct: 203 IEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 489 VQLL 492
           V LL
Sbjct: 262 VCLL 265

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 67.3 bits (163), Expect = 6e-12
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 18/233 (7%)

Query: 173 KALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTATSPRIREKTVTVICSL-AESGSCE 230
             + + +     D K V   +    N++  V      + R +E    V  +         
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301

Query: 231 NWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLS-----MSAEMARAIVGHGGVRPLI 284
             L    V+   I L++   T    E +  ++Q L          +  A+     +  + 
Sbjct: 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361

Query: 285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD------CGILLGSKE 338
           ++          AA+  L+N++     ++++ +  I +++  L              +  
Sbjct: 362 DLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421

Query: 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP----QESAVGALRNL 387
                +  + A N    + +    GI  L+              +A   L+ +
Sbjct: 422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 55.3 bits (132), Expect = 3e-08
 Identities = 31/177 (17%), Positives = 73/177 (41%), Gaps = 17/177 (9%)

Query: 159 LLARLQIGHLEAKHK----ALDSLVEAMKEDEKNVLAVMGRSN-IAALVQLLTATSPRIR 213
            ++ L+     A  +    A+ +L        + + + + +   ++A+  LLT    R+ 
Sbjct: 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVV 372

Query: 214 EKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISL---------QRL 264
           +     + +LA   +    L+ +  +P L++ +  G        +            + +
Sbjct: 373 KAASGALRNLA-VDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431

Query: 265 SMSAEMARAIVGHGGVRPLIEICQTGDSVSQA--AAACTLKNISAVPEVRQMLAEEG 319
           + + E A+ +    G+  L+ I ++G+   +   AAA  L+ I    E+R+ L +EG
Sbjct: 432 AENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 50.3 bits (119), Expect = 1e-06
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 3/122 (2%)

Query: 411 AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
              L   +  + A                    P +I +L  + ++V+  AA  +  L  
Sbjct: 18  WAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCY 77

Query: 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--PSKKCKKLMISYGAIG 528
                +   R  K +P LV LLD  P+      A   L ++S    +  K  + +   + 
Sbjct: 78  RNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVP 136

Query: 529 YL 530
            L
Sbjct: 137 AL 138

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 84.3 bits (208), Expect = 4e-18
 Identities = 37/233 (15%), Positives = 83/233 (35%), Gaps = 9/233 (3%)

Query: 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV 293
           +S+ + P      ++     +E A   L  L  + + A       G+  L+       + 
Sbjct: 37  LSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA 96

Query: 294 S-QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN 351
             +  AA  +   S     +++ +   G +  +++LLD       +  A   +  L    
Sbjct: 97  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 352 ENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLVH 407
           E      +   G   L+  +   +   +  +   L+NL+      +  L S+G   +LV 
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216

Query: 408 VLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
           +++       +    ALC + T   +  +   E      L +LL  +   +++
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELLRHRCQLLQQ 267

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 75.4 bits (185), Expect = 4e-15
 Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 11/238 (4%)

Query: 179 VEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV 238
           VE MK      L V+ +       +   A   + RE  + ++  L E+            
Sbjct: 27  VEQMKSC----LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82

Query: 239 LPPLI-RLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVS-Q 295
           +  L+ R +E+G+   + +A   +       A +   ++G G +R L+ +       + +
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 296 AAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354
             A   +  +                 SV+++ +   +    K  +A  LQNL   +   
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPEH 201

Query: 355 RRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK 410
           + ++ S G ++ L+A +        E  +GAL +LV    Q V         L  +L+
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLR 259

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 72.7 bits (178), Expect = 2e-14
 Identities = 30/208 (14%), Positives = 72/208 (34%), Gaps = 9/208 (4%)

Query: 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA-Y 370
             +      +       +       +E A E L +L  + +N         G+  L+  Y
Sbjct: 32  SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRY 90

Query: 371 LDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLVHVL-KAGSLGAQQAAASALC 425
           L+      +  A   +     +V+  QE ++ LG   +L+ +L +      +  A  A+ 
Sbjct: 91  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150

Query: 426 RVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKS 484
            +                  +L++ ++ +   ++  +A  + +L+      +        
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210

Query: 485 VPNLVQLLDPSPQNTAKKYAVACLASLS 512
           V  LV L+  +  +   ++ +  L SL 
Sbjct: 211 VQQLVALVR-TEHSPFHEHVLGALCSLV 237

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVIC 221
           L+ G    + +A   +    +        V+G   +  L++LL       +R K +  I 
Sbjct: 91  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150

Query: 222 SLA-ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGG 279
            L  E  +     +       L+R ++      K K+   LQ L +   E    +   G 
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210

Query: 280 VRPLIEICQTGDSVSQAAAACTLKNIS 306
           V+ L+ + +T  S         L ++ 
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLV 237

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 8/201 (3%)

Query: 341 AECLQNLTASNENLRRSV-VSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQ----EV 395
              ++      E ++  + V    +       +    Q+   GAL  L            
Sbjct: 17  GSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD 76

Query: 396 LISL-GFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAK 453
              L G    +   L+AG+ G +  AA  +       A +++ V   G    L++LL+  
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136

Query: 454 PN-SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
              +VR  A  AIS LV   +              L++ +    Q    K A      L 
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196

Query: 513 PSKKCKKLMISYGAIGYLKKL 533
              + K  + S G +  L  L
Sbjct: 197 GHPEHKGTLCSMGMVQQLVAL 217

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 3/167 (1%)

Query: 370 YLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVC 428
           +  G +P+ S +   R  V  +   + +     P      +       ++ A   L  +C
Sbjct: 9   HSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC 68

Query: 429 TSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPN 487
            + +      +  G   L+ + LEA    +R  AAQ I +        +E      ++  
Sbjct: 69  ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128

Query: 488 LVQLLDPSPQNTAKKYAVACLASLSPSKK-CKKLMISYGAIGYLKKL 533
           L++LLD    +T +  A+  ++ L   ++      +       L + 
Sbjct: 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA 175

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-E 225
               + KAL ++   ++E E  +L  +     + L++ +     +++ K+  ++ +L   
Sbjct: 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197

Query: 226 SGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVR 281
               +  L S G++  L+ LV +  +   E    +L  L               + 
Sbjct: 198 HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG 253

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 71.9 bits (176), Expect = 2e-14
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 12/220 (5%)

Query: 280 VRPLIEICQTGDSVS--QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGS 336
           +   + + +    +    +AAA  +++      E R+ + +   +  +++LL        
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE-DV 68

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP---QESAVGALRNLVGSVSQ 393
           +      L+NL   + + +  V    G+  LL  L        ++   G L NL  +   
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128

Query: 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK 453
           + L+       L   +     G          +     +        GC   +       
Sbjct: 129 KNLMITEALLTLTENIIIPFSG---WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 454 PNSVREVAAQAISSLVTLPQNC-REVKRDDKSVPNLVQLL 492
             ++R      I SLV   +    + + DDK+  N V +L
Sbjct: 186 RKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 67.3 bits (164), Expect = 9e-13
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 403 PRLVHVLKAGS--LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
            R V +L+A         AAA+ +   C   +E +K V +      L++LL+ +   V+ 
Sbjct: 11  ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQR 70

Query: 460 VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK 519
               A+ +LV    + +    +   VP L+Q+L  +     KK     L +LS + K K 
Sbjct: 71  AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN 130

Query: 520 LMISYGAI 527
           LMI+   +
Sbjct: 131 LMITEALL 138

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 41/258 (15%), Positives = 85/258 (32%), Gaps = 44/258 (17%)

Query: 143 GSSTDAEATTHGNTRELLARLQIGH--LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAA 200
           GS+ D E T        ++ L+  H        A   +     +  +    V     I  
Sbjct: 1   GSNADMEMTL----ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILK 56

Query: 201 LVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVG-KEKAT 258
           L+QLL   +  ++      + +L  E    +  +     +P L+++++    +  K++ T
Sbjct: 57  LLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116

Query: 259 ISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE 318
             L  LS + ++   ++    +  L E      S            +             
Sbjct: 117 GLLWNLSSNDKLKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN----- 170

Query: 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-IRSLLAYLDGPLPQ 377
                                   CL+N++++  + R+++    G I SL+ Y+ G +  
Sbjct: 171 ---------------------VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIAD 209

Query: 378 --------ESAVGALRNL 387
                   E+ V  L NL
Sbjct: 210 YQPDDKATENCVCILHNL 227

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 26/174 (14%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTV 217
           LL  L++ + + +     +L   + ED  N L V   + +  L+Q+L        +++  
Sbjct: 57  LLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116

Query: 218 TVICSLAESGSCENWLVSEGVLPPLIRLV----------------ESGSTVGKEKATISL 261
            ++ +L+ S      L+    L  L   +                           T  L
Sbjct: 117 GLLWNLS-SNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCL 175

Query: 262 QRLSMSAEMARAIVG--HGGVRPLIEICQTGDSVSQAA------AACTLKNISA 307
           + +S +    R  +    G +  L+   +   +  Q          C L N+S 
Sbjct: 176 RNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 32/279 (11%), Positives = 85/279 (30%), Gaps = 38/279 (13%)

Query: 169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228
            A  K              N   ++    I+ L + +   SP  +++ V +I ++  S +
Sbjct: 430 PAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN 489

Query: 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-----SMSAEMARAIVGHGG-VRP 282
               L  +G +  ++  + +   +G+    +  + L       +  +          +  
Sbjct: 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPF 549

Query: 283 LIEICQTGDSVSQAA--------------AACTLKNISAVPE------VRQMLAEEGIVS 322
           L E+      V                  A   L N+++          + +++ +   S
Sbjct: 550 LFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609

Query: 323 VMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS------LLAYLDGPLP 376
            +  L+    +   +    E + N+ +    +     +    +S      L+  L     
Sbjct: 610 TIENLMLDENVPLQRS-TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV 668

Query: 377 --QESAVGALRNLVGS---VSQEVLISLGFFPRLVHVLK 410
             Q +      N+  +   +++E+L         + V  
Sbjct: 669 ESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFA 707

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 32/276 (11%), Positives = 81/276 (29%), Gaps = 36/276 (13%)

Query: 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG 331
           + I+    +  L           +      + NI+        LA++G V ++++ L   
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK 510

Query: 332 --ILLGSKEYAAECLQNLTASNE------------------NLRRSVVSEGGIRSLLAYL 371
             I    +      L  +                        L                 
Sbjct: 511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 372 DGPLPQESAVGALRNLVG-------SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424
                   A+ AL NL          V + ++ +  ++  + +++   ++  Q++    +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 425 CRVCTSAEMKKLVGEAGCTP-------LLIKLLEAKPNSVREVAAQAISSLVT-LPQNCR 476
             + +              P       +L+KLL+      +   A   +++ T +P   +
Sbjct: 631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690

Query: 477 EVKRDDKSVPNLVQLL-DPSPQNTAKKYAVACLASL 511
           E+    + + N +Q+  D       ++  +     L
Sbjct: 691 ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGL 726

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 96/593 (16%), Positives = 187/593 (31%), Gaps = 178/593 (30%)

Query: 50  KLEQIPSHLSDLSSH--PCFSKNALCREQLQAVSKTLKEAIELAE----LCVKEKYEGKL 103
           +  +      D+ S     F  N  C++    V    K  +   E    +  K+   G L
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 104 RM-------QSDL--DALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHG 154
           R+       Q ++    +   L +N       + + +  E   P  +     +     + 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLY- 120

Query: 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAV--M---GRSNIAALVQLLTATS 209
           N  ++ A+  +  L+   K   +L+E      KNVL +  +   G++ +A  V      S
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVL-IDGVLGSGKTWVALDV----CLS 173

Query: 210 PRIREKT------VTVICSLAESGSCENWLVSEGVLPPLIRL----VESGSTVGKEKATI 259
            +++ K       + +        +C +    E VL  L +L      + ++     + I
Sbjct: 174 YKVQCKMDFKIFWLNL-------KNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 260 SLQRLSMSAEMARAIVGHGGVRPLI--------EI-------CQ----TGD-SVSQAAAA 299
            L+  S+ AE+ R +        L+        +        C+    T    V+   +A
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI------------LLGSKEYAAECLQNL 347
            T  +IS        L  + + S+++K LDC                 S    AE +++ 
Sbjct: 284 ATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDG 340

Query: 348 TASNENLRRSVVS--EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRL 405
            A+ +N +          I S L  L+   P E              +++   L  FP  
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLE---PAEY-------------RKMFDRLSVFPPS 384

Query: 406 VHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLL--EAKPNSVREVAAQ 463
            H+                                    +L+ L+  +   + V  V  +
Sbjct: 385 AHI----------------------------------PTILLSLIWFDVIKSDVMVVVNK 410

Query: 464 AIS-SLVTLPQNCREVKRDDK----SVPNLVQLLDPSPQNTAK-------KYAVACLASL 511
               SL         V++  K    S+P++   L    +N           Y +    + 
Sbjct: 411 LHKYSL---------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK--TF 459

Query: 512 SPSKKCKKLMISYGA--IGY-LKKLSEMD-IPGARKLLERLERGRLRSFFSRK 560
                    +  Y    IG+ LK +   + +   R +   L+    R F  +K
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--LD---FR-FLEQK 506

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 47/289 (16%), Positives = 78/289 (26%), Gaps = 68/289 (23%)

Query: 9   ALANIQSADEWLLHA------QELVPVAVEKARQIKGFPGR--WKMIISKL---EQIPSH 57
           AL  ++ A   L+          +        +       +  W + +      E +   
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEM 201

Query: 58  LSDLSSHPCFSKNALCR-EQLQAVSKTLKEAI-ELAELCVKEKYEGKLRMQSDLDALSGK 115
           L  L        N   R +    +   +     EL  L   + YE  L     L  +   
Sbjct: 202 LQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNA 256

Query: 116 LDLNLHD--CGLLIKT-------GVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIG 166
              N  +  C +L+ T        +    T  +S+   S      T    + LL      
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLL----- 308

Query: 167 HLEAKHKALDSLVEAMKEDEKNV--LAVMGRSNIAALVQLLTATSPRIR----EKTVTVI 220
                 K LD   + +  +        +   S IA  ++   AT    +    +K  T+I
Sbjct: 309 ------KYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 221 -CSLA--ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM 266
             SL   E            V P                A I    LS+
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFP--------------PSAHIPTILLSL 394

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 60/462 (12%), Positives = 142/462 (30%), Gaps = 27/462 (5%)

Query: 90   LAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAE 149
            + ++           + + L     +L   +     +    ++  + L         D  
Sbjct: 593  MGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL-------KIDLR 645

Query: 150  ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS 209
                     L + L+      K   L +L   +K    ++ A M  + +  L  L++ + 
Sbjct: 646  PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD 705

Query: 210  PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE 269
              + +  ++ + +LA+        +S  +L  LI LV S    G   + +     ++   
Sbjct: 706  MHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVT 765

Query: 270  MARAIVGHGGVRPLIEICQTGDS--VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL 327
                +     +R L     +  +    + +     K ++A+           +   +  +
Sbjct: 766  GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 825

Query: 328  LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNL 387
             +       +  A   L  +    +   +  +    + +  +       + +A  AL ++
Sbjct: 826  KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS--PSEEVKSAASYALGSI 883

Query: 388  VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEA-GCTPLL 446
                  E L      P ++  + +     Q     +L  + +SA +  L         LL
Sbjct: 884  SVGNLPEYL------PFVLQEITSQP-KRQYLLLHSLKEIISSASVVGLKPYVENIWALL 936

Query: 447  IKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA 506
            +K  E      R V A+ +  L         +   +  +P L   L             A
Sbjct: 937  LKHCECAEEGTRNVVAECLGKLT--------LIDPETLLPRLKGYLISGSSYARSSVVTA 988

Query: 507  CLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERL 548
               ++S   +    ++      +LK L + D+   R  L   
Sbjct: 989  VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF 1030

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 45/284 (15%), Positives = 89/284 (31%), Gaps = 18/284 (6%)

Query: 197 NIAALVQLLTATSPRIREK-TVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKE 255
           +I+ L++ +T++    R   T  ++  L +     +      V+  +++L+E  +   + 
Sbjct: 7   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66

Query: 256 KATISLQRLS--MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA---VPE 310
            A   L  L   +       IV       L     +     +  ++  LK +        
Sbjct: 67  LAVKCLGPLVSKVKEYQVETIV-----DTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121

Query: 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS--EGGIRSLL 368
               LA      +  +L              E L  +          +V+     +  LL
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181

Query: 369 AYLDGPLP--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
             L  P    ++  + AL +LV S    V + L     L+  L      +          
Sbjct: 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL--IEHLLSELSKNDSMSTTRTYIQCIA 239

Query: 427 VCTSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLV 469
             +     ++        PL++K      + +RE   QA  S V
Sbjct: 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 283

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 37/276 (13%), Positives = 98/276 (35%), Gaps = 21/276 (7%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
           +  + +L++  +  ++    +VI  L+     +N +  E +LP  +  ++      +   
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI--EHLLPLFLAQLKDECPEVRLNI 383

Query: 258 TISLQRLSM---SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314
             +L  ++      +++++++       ++E+ +      + A       I  +P +   
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPA-----IVELAEDAKWRVRLAI------IEYMPLLAGQ 432

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP 374
           L  E     +  L    ++            NL    E   +       I  +LA    P
Sbjct: 433 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492

Query: 375 LPQ--ESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE 432
                 + +  +  L     Q++       P ++ +        +   A +L ++    +
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKH-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551

Query: 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468
              L  ++   P+L KL + +   V+  A +A++ L
Sbjct: 552 NSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 41/277 (14%)

Query: 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV 293
            +E +     R+  S     +  A  +L+ LS   +  R  VG   +  LI + QT  S 
Sbjct: 19  EAETIQKLCDRVASSTLLDDRRNAVRALKSLS---KKYRLEVGIQAMEHLIHVLQTDRSD 75

Query: 294 SQAAAAC--TLKNISAVPE-------------------VRQMLAEEGIVSVMIKLLDCGI 332
           S+       TL NI +  E                       + ++  V++++ LL+   
Sbjct: 76  SEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD 135

Query: 333 LLGSKEYAAECLQNLTASNENLRRSVV--SEGGIRSLLAYLDGP--LPQESAVGALRNLV 388
               +    + L +L        + ++  S  G+  L+  L     + +   V  L+ L 
Sbjct: 136 -FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT 194

Query: 389 GSVS--QEVLISLGFFPRLVHVLKA-----GSLGAQQAAA--SALCRVCTSAEMKKLVGE 439
            S    Q+++     F RL+ ++       G +  +        L +   S +      E
Sbjct: 195 RSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ--NFFKE 252

Query: 440 AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCR 476
                 +    E   +     +AQ +++L  + Q  R
Sbjct: 253 GSYIQRMKPWFEV-GDENSGWSAQKVTNLHLMLQLVR 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	560
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.98
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
3grl_A	651	General vesicular transport factor P115; vesicle t	99.68
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.54
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.54
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.52
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.51
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.51
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.49
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.42
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.34
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.32
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.27
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.25
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.24
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.23
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.23
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.22
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.18
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.1
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.1
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.09
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.06
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.99
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.97
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.96
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.92
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.91
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.83
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.73
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.61
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.52
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.5
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.47
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.45
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.37
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.36
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.29
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.18
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.15
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.13
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.13
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.05
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.96
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.89
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.79
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.63
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.17
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.15
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.13
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.86
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.81
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.53
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.44
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.38
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.28
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.12
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.89
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.82
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.61
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.38
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.33
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.97
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.9
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.85
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.78
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.59
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.46
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	94.45
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	94.35
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.28
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.19
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.58
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.28
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	93.02
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.72
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	92.55
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.13
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.77
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	91.75
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	90.89
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	90.39
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.85
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	89.08
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	88.13
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	86.95
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	85.78
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	84.19
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	84.07
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	83.96
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	83.13

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.6e-36  Score=322.53  Aligned_cols=393  Identities=16%  Similarity=0.203  Sum_probs=336.7

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-  228 (560)
                      ....+++++..+++++++.+.+|+..++.+++.. ......+++.|++|+|+++|+.+ ++.+|..|+++|.+|+...+ 
T Consensus        55 ~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e  134 (510)
T 3ul1_B           55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE  134 (510)
T ss_dssp             SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence            3456999999999999999999999999987532 23456788999999999999865 58999999999999987654 


Q ss_pred             hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCC-----hHHHHHHHHHH
Q 008585          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTL  302 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL  302 (560)
                      .+..+++.|++|.|+++|++++..+++.|+++|++|+.+ ++.+..+.+.|++++|+.++.+.+     ...++.++++|
T Consensus       135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  214 (510)
T 3ul1_B          135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  214 (510)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            888999999999999999999999999999999999986 677888999999999999998654     35678999999


Q ss_pred             HHhcCCchhHH-HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585          303 KNISAVPEVRQ-MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES  379 (560)
Q Consensus       303 ~nLa~~~~~~~-~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~  379 (560)
                      +|++.+..... .....++++.|+.++.++++ +++..++++|.+|+.+++...+.+.+.|+++.|+.++.+  +.++..
T Consensus       215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  293 (510)
T 3ul1_B          215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  293 (510)
T ss_dssp             HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHhhcccchhHHHHHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence            99998654333 33447899999999999887 899999999999999888888888899999999999977  567899


Q ss_pred             HHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585          380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS  456 (560)
Q Consensus       380 a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~  456 (560)
                      ++++|+|++.  +.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+ ++.+..+.+.|+++.|+.++.+++..
T Consensus       294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~  373 (510)
T 3ul1_B          294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK  373 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHH
Confidence            9999999987  35667788999999999999999999999999999999864 78888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-------ChhhHHHHHHcChhH
Q 008585          457 VREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-------SKKCKKLMISYGAIG  528 (560)
Q Consensus       457 v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-------~~~~r~~i~~~g~i~  528 (560)
                      +|..|+++|++++.+ .......+.+.++++.|+.+|++.+. .+...++.+|.++..       .+..+..|.+.|+++
T Consensus       374 v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~-~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~  452 (510)
T 3ul1_B          374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD  452 (510)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHH
Confidence            999999999999953 33344455578999999999998754 467788888887752       335677888999999


Q ss_pred             HHHHhhccCchhHHHHHH
Q 008585          529 YLKKLSEMDIPGARKLLE  546 (560)
Q Consensus       529 ~L~~L~~~~~~~akkl~~  546 (560)
                      .|..|...+++...+.+.
T Consensus       453 ~ie~Lq~~~n~~i~~~A~  470 (510)
T 3ul1_B          453 KIEALQRHENESVYKASL  470 (510)
T ss_dssp             HHHHGGGCSSHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHH
Confidence            999999888876544433

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3e-35  Score=317.00  Aligned_cols=394  Identities=16%  Similarity=0.205  Sum_probs=338.2

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-  228 (560)
                      ....++.++..+++++++.+..|+..+..+++.. ......+++.|++|.|+++|+.+ ++.++..|+++|.+++...+ 
T Consensus        74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~  153 (529)
T 3tpo_A           74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE  153 (529)
T ss_dssp             SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            3456899999999999999999999999987533 23456788999999999999754 59999999999999998765 


Q ss_pred             hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCC-----hHHHHHHHHHH
Q 008585          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTL  302 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL  302 (560)
                      .+..+++.|++|.|+.+|.+++..+++.|+++|++|+.+ ++++..+.+.|++++|+.++...+     ..+...++++|
T Consensus       154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  233 (529)
T 3tpo_A          154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  233 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999885 778889999999999999998644     35678999999


Q ss_pred             HHhcCCchhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585          303 KNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES  379 (560)
Q Consensus       303 ~nLa~~~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~  379 (560)
                      +|++.+.... ......+++|.|+.++.++++ +++..++++|.+++.+++...+.+.+.|+++.|+.++.+  +.++..
T Consensus       234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  312 (529)
T 3tpo_A          234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  312 (529)
T ss_dssp             HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHHhcccchhhHHHHhhHHHHHHHHhcCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence            9999865433 333447899999999999987 899999999999999888888888999999999999977  457899


Q ss_pred             HHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585          380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS  456 (560)
Q Consensus       380 a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~  456 (560)
                      ++.+|+|++.  +.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+ ++....+.+.|++|.|+.++.+++..
T Consensus       313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~  392 (529)
T 3tpo_A          313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK  392 (529)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence            9999999997  35667788999999999999999999999999999999964 78888899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-------ChhhHHHHHHcChhH
Q 008585          457 VREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-------SKKCKKLMISYGAIG  528 (560)
Q Consensus       457 v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-------~~~~r~~i~~~g~i~  528 (560)
                      ++..|+++|++++.+ .......+.+.++++.|+.+|++.+. .+...++.+|.++..       .+..+..|.++|+++
T Consensus       393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~-~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~  471 (529)
T 3tpo_A          393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD  471 (529)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHH
Confidence            999999999999853 33444455578999999999998754 466788888887752       335667888999999


Q ss_pred             HHHHhhccCchhHHHHHHH
Q 008585          529 YLKKLSEMDIPGARKLLER  547 (560)
Q Consensus       529 ~L~~L~~~~~~~akkl~~~  547 (560)
                      .|..|...+++...+.+..
T Consensus       472 ~ie~Lq~~~n~~i~~~A~~  490 (529)
T 3tpo_A          472 KIEALQRHENESVYKASLN  490 (529)
T ss_dssp             HHTGGGGCSSHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHH
Confidence            9999999888765554433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.5e-36  Score=321.42  Aligned_cols=373  Identities=19%  Similarity=0.181  Sum_probs=314.0

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC--CchH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES--GSCE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~--~~~~  230 (560)
                      ...++.++..|++++++.+..|+..|..++..+++++..+++.|+|++|+++|+++++++|+.|+++|.+|+..  ++++
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk  126 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK  126 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence            34599999999999999999999999999998999999999999999999999999999999999999999984  5699


Q ss_pred             HHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc------------------cCC
Q 008585          231 NWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------------------TGD  291 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~------------------~~~  291 (560)
                      ..+++.|+|++|+++|++ .+..+++.++.+|++|+.+++++..+++ ++++.|+.++.                  ..+
T Consensus       127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence            999999999999999998 5788999999999999999999999986 57999999872                  135


Q ss_pred             hHHHHHHHHHHHHhcCCc-hhHHHHHh-cCcHHHHHHHhhc------CCchhHHHHHHHHHHHHccCChh-------HHH
Q 008585          292 SVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNEN-------LRR  356 (560)
Q Consensus       292 ~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~v~~L~~lL~~------~~~~~v~~~a~~~L~~La~~~~~-------~~~  356 (560)
                      +.++..|+++|+||+.+. ++++.+.+ .|+++.|+.++.+      .+. ..+++|+++|.||+...+.       ..+
T Consensus       206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-KLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-HHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-HHHHHHHHHHHHhhccccccccchhhhhh
Confidence            789999999999999755 66999998 5777899999975      333 7899999999999975210       000


Q ss_pred             H---------HHhC---------CCHHHHHHhcc---CCccHHHHHHHHHHhhccc------cHHHHHhCCcHHHHHHHH
Q 008585          357 S---------VVSE---------GGIRSLLAYLD---GPLPQESAVGALRNLVGSV------SQEVLISLGFFPRLVHVL  409 (560)
Q Consensus       357 ~---------i~~~---------g~l~~L~~ll~---~~~~~~~a~~~L~nla~~~------~~~~l~~~~~i~~Lv~lL  409 (560)
                      .         ....         ++++.|+.++.   ++.+++.|+++|.||+...      .+..+.+.++++.|+.+|
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL  364 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL  364 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence            0         1122         33566778884   2678999999999998721      233445678899999999


Q ss_pred             hcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC--------CHHHHHHHHHHHHHhcCCChhhHHHhhh
Q 008585          410 KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--------PNSVREVAAQAISSLVTLPQNCREVKRD  481 (560)
Q Consensus       410 ~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~--------~~~v~~~A~~aL~~L~~~~~~~~~~~~~  481 (560)
                      .+++..+++.|+++|+||+.++.++..| ..|+++.|+++|.+.        +.+++..|+.+|.+|+...+.....+.+
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~  443 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE  443 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999999999999999988888766 678999999999865        4678899999999998654444445557


Q ss_pred             CCChHHHHhccCCC-CchhhHHHHHHHHHHhCCChhhHHHHHHcChhH
Q 008585          482 DKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPSKKCKKLMISYGAIG  528 (560)
Q Consensus       482 ~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~  528 (560)
                      .++++.|+++|.++ ..+.++++|..+|.+|+.+++.|+.+.+.|+-+
T Consensus       444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~  491 (584)
T 3l6x_A          444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKK  491 (584)
T ss_dssp             TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCG
T ss_pred             CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCH
Confidence            89999999999986 345688899999999999999999999987654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.7e-34  Score=311.33  Aligned_cols=394  Identities=14%  Similarity=0.170  Sum_probs=343.1

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCC-c
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESG-S  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~-~  228 (560)
                      ....++.++..|++++++.+..|+..|..++...+ .....++..|+++.|+++|++++ +.++..|+++|.+++... +
T Consensus        72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            34569999999999999999999999999987554 56677888999999999999987 999999999999999975 5


Q ss_pred             hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhc
Q 008585          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNIS  306 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa  306 (560)
                      .+..+++.|+++.|+.+|.++++.+++.|+++|.+|+.+ ++++..+...|+++.|+.++ .+.++.++..++++|++|+
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999876 66788899999999999999 5688999999999999999


Q ss_pred             CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585          307 AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (560)
Q Consensus       307 ~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L  384 (560)
                      ............++++.|+.++.+++. .++..++++|++++..++...+.+++.|+++.|+.++.+  +.++..|+++|
T Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L  310 (528)
T 4b8j_A          232 RGKPQPSFEQTRPALPALARLIHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV  310 (528)
T ss_dssp             CSSSCCCHHHHTTHHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence            865444455568999999999998886 899999999999999888777888999999999999977  46899999999


Q ss_pred             HHhhc--cccHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585          385 RNLVG--SVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~  460 (560)
                      +|++.  +.....+.+.|+++.|+.+|.++ ++.++..|+++|+||+.. ++....+.+.|+++.|++++.+++..++..
T Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~  390 (528)
T 4b8j_A          311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE  390 (528)
T ss_dssp             HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence            99998  34566778899999999999998 999999999999999964 777888889999999999999999999999


Q ss_pred             HHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh------------hhHHHHHHcChh
Q 008585          461 AAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK------------KCKKLMISYGAI  527 (560)
Q Consensus       461 A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~------------~~r~~i~~~g~i  527 (560)
                      |+++|.+++.+ .+.....+.+.++++.|+.+|.+.+ ..++..++.+|.++....            .....+.+.|++
T Consensus       391 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  469 (528)
T 4b8j_A          391 AAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD-IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGL  469 (528)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcH
Confidence            99999999954 3444445556899999999999864 457889999999887533            357888999999


Q ss_pred             HHHHHhhccCchhHHHHHHH
Q 008585          528 GYLKKLSEMDIPGARKLLER  547 (560)
Q Consensus       528 ~~L~~L~~~~~~~akkl~~~  547 (560)
                      +.|..|.+.++++.++.+..
T Consensus       470 ~~l~~L~~~~~~~v~~~a~~  489 (528)
T 4b8j_A          470 EKIENLQSHDNNEIYEKAVK  489 (528)
T ss_dssp             HHHHHGGGCSSHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHH
Confidence            99999998888765555444

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.3e-35  Score=311.64  Aligned_cols=362  Identities=17%  Similarity=0.181  Sum_probs=307.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL  233 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l  233 (560)
                      .++.++..|++++++.+..|+..|.+++.+++.++..+++.|+++.|+++|+++++++++.|+++|.+|+.+ ++++..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            588999999999999999999999999987877777889999999999999999999999999999999987 5699999


Q ss_pred             HhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc--------c--------CChHHHH
Q 008585          234 VSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--------T--------GDSVSQA  296 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~--------~--------~~~~~~~  296 (560)
                      ++.|+++.|+++|+ ++++.+++.++++|++|+.+++++..+++ |+++.|+.++.        +        .++.++.
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999999889999999 99999999993        2        2456777


Q ss_pred             HHHHHHHHhcCCchhHHHHHhc-CcHHHHHHHhhc------CCchhHHHHHHHHHHHHccCCh-----------------
Q 008585          297 AAACTLKNISAVPEVRQMLAEE-GIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNE-----------------  352 (560)
Q Consensus       297 ~a~~aL~nLa~~~~~~~~i~e~-g~v~~L~~lL~~------~~~~~v~~~a~~~L~~La~~~~-----------------  352 (560)
                      .|+++|+||+.+++++..+.+. |+++.|+.++.+      .+. .++++++.+|.|++...+                 
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~-~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~  240 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD-KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC-TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch-HHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence            9999999999989999999997 999999999986      233 689999999999974210                 


Q ss_pred             ---------------------------------hHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc-ccc---
Q 008585          353 ---------------------------------NLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVS---  392 (560)
Q Consensus       353 ---------------------------------~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~-~~~---  392 (560)
                                                       ...+.+.+.|+++.|+.+|.+   +.+++.|+++|.|++. ...   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~  320 (457)
T 1xm9_A          241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence                                             011123345567888888853   5789999999999997 221   


Q ss_pred             ---HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC------HHHHHHHHH
Q 008585          393 ---QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP------NSVREVAAQ  463 (560)
Q Consensus       393 ---~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~------~~v~~~A~~  463 (560)
                         +..+.+.|+++.|+++|.+++..++..|+++|+|++.+++.+..+. .|++++|++++...+      +++...++.
T Consensus       321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~  399 (457)
T 1xm9_A          321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence               2233468999999999999999999999999999999888877665 478999999998764      358889999


Q ss_pred             HHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585          464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK  519 (560)
Q Consensus       464 aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~  519 (560)
                      +|.++..+.+.....+.+.++++.|++++.++..+.+++.|..+|.++..+++.|.
T Consensus       400 ~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~  455 (457)
T 1xm9_A          400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             HHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence            99999876655566666789999999999987344688899999999998887653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=9.4e-35  Score=319.14  Aligned_cols=382  Identities=17%  Similarity=0.199  Sum_probs=324.4

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCC----HHHHHHhhcCC--CHHHHHHHHHHHHHHhcC
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSN----IAALVQLLTAT--SPRIREKTVTVICSLAES  226 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~----v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~  226 (560)
                      ..++.|...+++++...+..|+..|.++..... .+....++.|.    ++.++++|.++  ++++++.|+++|.+|+.+
T Consensus       330 ~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~  409 (810)
T 3now_A          330 QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD  409 (810)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS
T ss_pred             cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence            346778888888998899999999999975321 12223334454    55677888887  799999999999999999


Q ss_pred             CchHHHHH-hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh------------------------------hH---H
Q 008585          227 GSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE------------------------------MA---R  272 (560)
Q Consensus       227 ~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~------------------------------~~---~  272 (560)
                      ++.+..++ +.|+++.|+.+|++++..++..++++|.||+..++                              ++   .
T Consensus       410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~  489 (810)
T 3now_A          410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT  489 (810)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence            99888877 47999999999999999999999999999987532                              12   5


Q ss_pred             HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC-C
Q 008585          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS-N  351 (560)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~-~  351 (560)
                      .+++.|+++.|+.+++++++.++..|+++|.|++.+++++..+++.|+++.|+.++.++++ ..++.|+++|.+|+.+ +
T Consensus       490 ~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~-~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE-KGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH-HHHHHHHHHHHHHhcCCC
Confidence            7889999999999999999999999999999999999999999999999999999999987 8999999999999874 3


Q ss_pred             hhHHH-HHHhCCCHHHHHHhccCC-c--cHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585          352 ENLRR-SVVSEGGIRSLLAYLDGP-L--PQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (560)
Q Consensus       352 ~~~~~-~i~~~g~l~~L~~ll~~~-~--~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (560)
                      +...- .....|++++|+.+|.++ .  .+..|+++|.||+.  +..+..+++.|+++.|+.+|.++++.+|+.|+++|+
T Consensus       569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~  648 (810)
T 3now_A          569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC  648 (810)
T ss_dssp             HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred             hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            32210 001135899999999763 3  34689999999998  356788899999999999999999999999999999


Q ss_pred             HHhCChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CChhhHHHhhhCCChHHHHhccCCCCchhhHHH
Q 008585          426 RVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY  503 (560)
Q Consensus       426 ~La~~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~  503 (560)
                      ||+.+++.+..+.+ .|.++.|+.++.+.+..+|..|+++|++|+. ++.+.+.++.+.++++.|+++|.+++ ..++..
T Consensus       649 NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-~~vq~~  727 (810)
T 3now_A          649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-PAVQHR  727 (810)
T ss_dssp             HHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS-HHHHHH
T ss_pred             HHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC-HHHHHH
Confidence            99999888888886 6899999999999999999999999999997 56667777765799999999999864 457889


Q ss_pred             HHHHHHHhCC-ChhhHHHHHHcChhHHHHHhhccC
Q 008585          504 AVACLASLSP-SKKCKKLMISYGAIGYLKKLSEMD  537 (560)
Q Consensus       504 a~~~L~~L~~-~~~~r~~i~~~g~i~~L~~L~~~~  537 (560)
                      ++.++.|++. +++.++.+++.|+++.|.+|++..
T Consensus       728 A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~  762 (810)
T 3now_A          728 GIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP  762 (810)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence            9999998875 568999999999999999998655

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=7.2e-33  Score=298.78  Aligned_cols=391  Identities=16%  Similarity=0.195  Sum_probs=339.6

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-  228 (560)
                      ....++.++..|++++++.+..|+..|..++... ..+...+++.|+++.|+++|+++ ++.++..|+++|.+++...+ 
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            4456999999999999999999999999997643 34456677889999999999997 89999999999999998764 


Q ss_pred             hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                      .+..+++.|+++.|+++|+++++.+++.|+++|.+|+.+ ++.+..+...|+++.|+.++.+.++.++..++++|++|+.
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence            788888999999999999999999999999999999886 6778888899999999999999999999999999999997


Q ss_pred             Cc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585          308 VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (560)
Q Consensus       308 ~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L  384 (560)
                      +. .........++++.|+.++.++++ .++..++++|.+|+..++...+.+++.|+++.|+.++.+  +.++..|+++|
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L  323 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  323 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence            64 445566668999999999998886 899999999999999888778888999999999999976  45789999999


Q ss_pred             HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585          385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                      ++++.  +.....+.+.|+++.|+.+|.++++.++..|+++|++++. +++..+.+.+.|+++.|++++.++++.++..|
T Consensus       324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  403 (530)
T 1wa5_B          324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  403 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99997  3455667788999999999999999999999999999996 47777888899999999999999999999999


Q ss_pred             HHHHHHhcCC--C--hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh------------hhHHHHHHcC
Q 008585          462 AQAISSLVTL--P--QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK------------KCKKLMISYG  525 (560)
Q Consensus       462 ~~aL~~L~~~--~--~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~------------~~r~~i~~~g  525 (560)
                      +++|++++.+  +  .....++ +.++++.|+.++.+.+ ..++..++.+|.++....            .....+.+.|
T Consensus       404 ~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~-~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g  481 (530)
T 1wa5_B          404 CWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIAD-NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG  481 (530)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence            9999999853  3  4555555 6789999999999864 457889999998887532            2456788999


Q ss_pred             hhHHHHHhhccCchhHHHHH
Q 008585          526 AIGYLKKLSEMDIPGARKLL  545 (560)
Q Consensus       526 ~i~~L~~L~~~~~~~akkl~  545 (560)
                      +++.|..|....+++.++.+
T Consensus       482 ~~~~L~~L~~~~~~~v~~~a  501 (530)
T 1wa5_B          482 GMEKIFNCQQNENDKIYEKA  501 (530)
T ss_dssp             HHHHHHGGGGCSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHH
Confidence            99999999988887764433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.2e-33  Score=300.74  Aligned_cols=370  Identities=16%  Similarity=0.176  Sum_probs=297.1

Q ss_pred             HHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCchHHHHHhCCCHHHHHHhhhcCCH
Q 008585          173 KALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENWLVSEGVLPPLIRLVESGST  251 (560)
Q Consensus       173 ~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~l~~~g~i~~Lv~lL~~~~~  251 (560)
                      .++..|-.+.++++..  .-...+.++.|+++|.++++++|..|+++|.+++. +++++..+++.|+||+|+++|++++.
T Consensus        27 ~~~~~~~~~~~~~~~~--~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~  104 (584)
T 3l6x_A           27 GSLASLDSLRKGGPPP--PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK  104 (584)
T ss_dssp             -------------CCC--CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred             chHHHHHHHHhcCCCC--CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH
Confidence            4455555555432311  12356789999999999999999999999999997 45699999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh
Q 008585          252 VGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL  328 (560)
Q Consensus       252 ~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL  328 (560)
                      .+++.|+++|.+|+.  +++++..+++.|+|+.|+.+|++ .++.++..++++|+||+.+++++..|++ ++++.|++++
T Consensus       105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL  183 (584)
T 3l6x_A          105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEV  183 (584)
T ss_dssp             HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHH
Confidence            999999999999997  48999999999999999999997 6788999999999999999999999996 5799999987


Q ss_pred             h-----------------cCCchhHHHHHHHHHHHHccCChhHHHHHHhCCC-HHHHHHhccC--------CccHHHHHH
Q 008585          329 D-----------------CGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-IRSLLAYLDG--------PLPQESAVG  382 (560)
Q Consensus       329 ~-----------------~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~-l~~L~~ll~~--------~~~~~~a~~  382 (560)
                      .                 +.++..++++|.++|.||+..+++.|+.+.+.+| ++.|+.++.+        ...+++|++
T Consensus       184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~  263 (584)
T 3l6x_A          184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC  263 (584)
T ss_dssp             HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred             hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence            2                 1112489999999999999988888999998655 5799999852        357899999


Q ss_pred             HHHHhhcc---cc------------------------HHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC----
Q 008585          383 ALRNLVGS---VS------------------------QEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS----  430 (560)
Q Consensus       383 ~L~nla~~---~~------------------------~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~----  430 (560)
                      +|+||+..   +.                        .+.+...++++.|+.+|+. .++.+++.|+++|.||+.+    
T Consensus       264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~  343 (584)
T 3l6x_A          264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY  343 (584)
T ss_dssp             HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred             HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence            99999972   10                        0111223456788999964 6799999999999999854    


Q ss_pred             -hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCC-------chhhHH
Q 008585          431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSP-------QNTAKK  502 (560)
Q Consensus       431 -~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-------~~~~~~  502 (560)
                       ...+..+.+.|++|.|++++.+++..++..|+++|.+|+.++.++..+  ..++++.|+++|.++.       .+.+..
T Consensus       344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g~ip~LV~LL~~~~~~~~~~~s~~v~~  421 (584)
T 3l6x_A          344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVI  421 (584)
T ss_dssp             HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHTSSSSSCSGGGTCCHHHHH
T ss_pred             cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH--HhCCHHHHHHHhcCCcccccccchHHHHH
Confidence             234556667789999999999999999999999999999888876544  4588999999998763       234677


Q ss_pred             HHHHHHHHhC-CChhhHHHHHHcChhHHHHHhhccC--chhHHHHHHH
Q 008585          503 YAVACLASLS-PSKKCKKLMISYGAIGYLKKLSEMD--IPGARKLLER  547 (560)
Q Consensus       503 ~a~~~L~~L~-~~~~~r~~i~~~g~i~~L~~L~~~~--~~~akkl~~~  547 (560)
                      .++.+|.+|+ .++.+++.|.+.|+++.|..|++..  .+.++|.+..
T Consensus       422 ~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~  469 (584)
T 3l6x_A          422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL  469 (584)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence            8888998885 6789999999999999999999886  5555555443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.1e-34  Score=315.02  Aligned_cols=360  Identities=18%  Similarity=0.173  Sum_probs=308.3

Q ss_pred             hhchHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHh-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585          152 THGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (560)
                      ....++.++..|.++  +.+.+..|+..|..++.+ +..+..++ +.|+++.|+++|+++++.++..|+++|+||+...+
T Consensus       375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence            344577788888877  889999999999999874 44555555 56899999999999999999999999999998531


Q ss_pred             ------------------------------hH---HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585          229 ------------------------------CE---NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (560)
Q Consensus       229 ------------------------------~~---~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~  275 (560)
                                                    .+   +.+++.|++|.|+++|+++++.+++.|+|+|.+|+.+++++..++
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv  533 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVV  533 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                                          12   678899999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH---HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585          276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML---AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (560)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i---~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~  352 (560)
                      ++|++++|+.+++++++..+..|+++|.|++.+.+....+   ...|+++.|+.+|.++.....+..|+++|.||+..++
T Consensus       534 ~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d  613 (810)
T 3now_A          534 QEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE  613 (810)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999999999998532222111   1135999999999866442446789999999999988


Q ss_pred             hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLIS-LGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~-~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      .+++.+++.|+++.|+.++.+  +.++..|+++|+|++. ++.+..+.+ .|.++.|+.++.+.+..+|..|+++|++++
T Consensus       614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt  693 (810)
T 3now_A          614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT  693 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999965  6789999999999998 556666665 689999999999999999999999999999


Q ss_pred             C-ChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC--CchhhHHHH
Q 008585          429 T-SAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS--PQNTAKKYA  504 (560)
Q Consensus       429 ~-~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~~a  504 (560)
                      . +++..+.+.+ .|+++.|++++.+++.+++..|+++|.+++.+.......+.+.++++.|..++..+  ....+.+.+
T Consensus       694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A  773 (810)
T 3now_A          694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA  773 (810)
T ss_dssp             HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence            7 6888888888 89999999999999999999999999999976665666777889999999999765  244577788


Q ss_pred             HHHHHHhC
Q 008585          505 VACLASLS  512 (560)
Q Consensus       505 ~~~L~~L~  512 (560)
                      +.+|.++.
T Consensus       774 l~aL~~ll  781 (810)
T 3now_A          774 TQCLAAAE  781 (810)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887774

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4.8e-33  Score=293.86  Aligned_cols=348  Identities=19%  Similarity=0.201  Sum_probs=294.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHH
Q 008585          197 NIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAI  274 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l  274 (560)
                      .++.|+++|+++++++|..|+++|.+++.+++ .+..+++.|+++.|+++|+++++.++..|+++|.+|+.+ ++++..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            58999999999999999999999999997665 677999999999999999999999999999999999986 9999999


Q ss_pred             HhCCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh--------cCC-------chhHHH
Q 008585          275 VGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD--------CGI-------LLGSKE  338 (560)
Q Consensus       275 ~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~--------~~~-------~~~v~~  338 (560)
                      ++.|+++.|+++|+ ++++.++..++++|+||+.+++++..+++ |+++.|++++.        ++.       +..+..
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999998999999999 99999999993        221       235667


Q ss_pred             HHHHHHHHHccCChhHHHHHHhC-CCHHHHHHhccC--------CccHHHHHHHHHHhhcc-------------------
Q 008585          339 YAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVGS-------------------  390 (560)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~ll~~--------~~~~~~a~~~L~nla~~-------------------  390 (560)
                      +|+++|.||+.+ +.+++.+.+. |+++.|+.++.+        ....+.++.+|+|++..                   
T Consensus       162 ~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~  240 (457)
T 1xm9_A          162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence            999999999987 7888889887 999999999963        46788999999999730                   


Q ss_pred             ---------------------------------ccHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhCCh-----
Q 008585          391 ---------------------------------VSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTSA-----  431 (560)
Q Consensus       391 ---------------------------------~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~La~~~-----  431 (560)
                                                       ...+.+.+.++++.|+.+|.+. ++.+++.|+++|+||+...     
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~  320 (457)
T 1xm9_A          241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence                                             0112234456788999999864 6999999999999999642     


Q ss_pred             hH-HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCc-----hhhHHHHH
Q 008585          432 EM-KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKYAV  505 (560)
Q Consensus       432 ~~-~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~~~~a~  505 (560)
                      .. +..+.+.|++|.|++++.+++.+++..|+++|.+|+.++.+.. .+. .++++.|+++|..+++     +.+...++
T Consensus       321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~-~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l  398 (457)
T 1xm9_A          321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR-VMG-NQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHH-HHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHH-HHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence            23 3344468999999999999999999999999999998776654 443 3689999999998743     24666888


Q ss_pred             HHHHHhC-CChhhHHHHHHcChhHHHHHhhccC-chhHHHHHHHH
Q 008585          506 ACLASLS-PSKKCKKLMISYGAIGYLKKLSEMD-IPGARKLLERL  548 (560)
Q Consensus       506 ~~L~~L~-~~~~~r~~i~~~g~i~~L~~L~~~~-~~~akkl~~~l  548 (560)
                      .++.++. .++..+..+.+.|+++.|..|...+ .+.++|.+-.+
T Consensus       399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~  443 (457)
T 1xm9_A          399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL  443 (457)
T ss_dssp             HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence            8888875 4668899999999999999999999 77777655444

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.3e-32  Score=293.29  Aligned_cols=359  Identities=19%  Similarity=0.239  Sum_probs=313.4

Q ss_pred             hchHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585          153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (560)
                      ...|+.|+..|+. .+++.+..|+.+|.+++.+++++...+++.|+++.|+.+|+++++++++.|+++|++|+.+.+ ++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r  197 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR  197 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence            4568999999964 558899999999999999999999999999999999999999999999999999999998765 89


Q ss_pred             HHHHhCCCHHHHHHhhhcCC-----HHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHHHHHhccCChHHHHHHHHHHHH
Q 008585          231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKN  304 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  304 (560)
                      ..+.+.|++++|+.+|...+     ......++++|.+++.+.+... .....++++.|+.++.+++++++..++++|.+
T Consensus       198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~  277 (529)
T 3tpo_A          198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  277 (529)
T ss_dssp             HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            99999999999999998653     4567889999999988754433 33346788999999999999999999999999


Q ss_pred             hcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHH
Q 008585          305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV  381 (560)
Q Consensus       305 La~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~  381 (560)
                      ++.++ +....+.+.|+++.|+.++.+++. .++..++.+|+|++.+++..+..+++.|+++.|+.++.+  +.++..|+
T Consensus       278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~  356 (529)
T 3tpo_A          278 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  356 (529)
T ss_dssp             HHSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             hhhhhhhhHHHHHhccchHHHHHHhcCCCh-hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence            99765 566777889999999999999886 899999999999999999999999999999999999987  56789999


Q ss_pred             HHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585          382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (560)
Q Consensus       382 ~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v  457 (560)
                      ++|+|++.  ......+.+.|+++.|+.+|.+++..++..|+++|+|++.  +++....+.+.|++++|++++.+.++.+
T Consensus       357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i  436 (529)
T 3tpo_A          357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI  436 (529)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred             HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHH
Confidence            99999998  3556778899999999999999999999999999999984  4788889999999999999999999999


Q ss_pred             HHHHHHHHHHhcC------CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585          458 REVAAQAISSLVT------LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (560)
Q Consensus       458 ~~~A~~aL~~L~~------~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~  513 (560)
                      +..++.+|.+|..      +......++.+.+++..+-.+..+.+ +.+.+.|..++-..-.
T Consensus       437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN-ESVYKASLNLIEKYFS  497 (529)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSS-HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCC
Confidence            9999999999872      22334556778899999888877654 4578888888865543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.7e-32  Score=293.93  Aligned_cols=359  Identities=18%  Similarity=0.237  Sum_probs=312.8

Q ss_pred             hchHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585          153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (560)
                      ...|+.|+..|+. ++++.+.+|+.+|.+++.++++++..+++.|+++.|+++|+++++++++.|+++|++|+.+.+ ++
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r  178 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  178 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            3468999999974 568899999999999999999999999999999999999999999999999999999999865 89


Q ss_pred             HHHHhCCCHHHHHHhhhcCC-----HHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHHHHHhccCChHHHHHHHHHHHH
Q 008585          231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKN  304 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  304 (560)
                      ..+.+.|++++|+.+|...+     ...+..++++|.+++.+..... .....++++.|+.++.+++++++..++++|++
T Consensus       179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~  258 (510)
T 3ul1_B          179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  258 (510)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999998753     4567889999999998754433 33346788999999999999999999999999


Q ss_pred             hcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHH
Q 008585          305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV  381 (560)
Q Consensus       305 La~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~  381 (560)
                      |+.++ +....+.+.|+++.|+.++.+++. .++..++++|+|++..++..+..+++.|+++.|+.++.+  +.++..|+
T Consensus       259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~  337 (510)
T 3ul1_B          259 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  337 (510)
T ss_dssp             HTSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred             HhhchhhhHHHHHhcccchhhhhhhcCCCh-hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence            99865 556677789999999999999886 899999999999999999999999999999999999987  46799999


Q ss_pred             HHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585          382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (560)
Q Consensus       382 ~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v  457 (560)
                      ++|+|++.  ......+.+.|+++.|+.++.+++..++..|+++|+|++.  +++....+.+.|++++|++++.++++.+
T Consensus       338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i  417 (510)
T 3ul1_B          338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI  417 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence            99999998  4566778899999999999999999999999999999985  4788889999999999999999999999


Q ss_pred             HHHHHHHHHHhcC------CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585          458 REVAAQAISSLVT------LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (560)
Q Consensus       458 ~~~A~~aL~~L~~------~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~  513 (560)
                      +..++++|.+|..      .......++.+.+++..+-.+..+.+ +.+.+.+..++-....
T Consensus       418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN-ESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCC
Confidence            9999999999872      12234556778899998888766654 4578889998876654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.8e-32  Score=293.77  Aligned_cols=386  Identities=21%  Similarity=0.212  Sum_probs=336.4

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENW  232 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~  232 (560)
                      ..++.++..|++++++.+..|+..|.+++.+++..+..+.+.|+++.|+++|+++++.++..++.+|.+++... +++..
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~  180 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            46889999999999999999999999999988778888888899999999999999999999999999999864 58889


Q ss_pred             HHhCCCHHHHHHhhhcCC-HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585          233 LVSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (560)
                      +.+.|+++.|+++|++++ ...+..++.+|.+++.+++++..+.+.|+++.|+.++.++++.++..++++|.|++.....
T Consensus       181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  260 (529)
T 1jdh_A          181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence            999999999999999874 4566778999999999999999999999999999999999999999999999999975432


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHh
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNL  387 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nl  387 (560)
                      ..  ...++++.+++++.++++ +++..++++|++|+.+++..++.+.+.|+++.|++++.+    +.++..++++|+|+
T Consensus       261 ~~--~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl  337 (529)
T 1jdh_A          261 QE--GMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  337 (529)
T ss_dssp             CS--CCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hH--HHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            21  225789999999998886 899999999999999888889999999999999999953    47889999999999


Q ss_pred             hcc--c---cHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHH--
Q 008585          388 VGS--V---SQEVLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE--  459 (560)
Q Consensus       388 a~~--~---~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~--  459 (560)
                      +..  .   .+..+.+.|+++.|+.+|.+++ +.++..++++|+|++.+++.+..+.+.|+++.|++++.+++.++|.  
T Consensus       338 ~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  417 (529)
T 1jdh_A          338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT  417 (529)
T ss_dssp             TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---
T ss_pred             HcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHH
Confidence            872  2   3567889999999999999876 6999999999999999988889999999999999999876666655  


Q ss_pred             --------------------HHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585          460 --------------------VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK  519 (560)
Q Consensus       460 --------------------~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~  519 (560)
                                          .++.+|++|+.++.++.. +.+.++++.|+.++.+++ +.++..+..++.+++.++..+.
T Consensus       418 ~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~-l~~~~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~  495 (529)
T 1jdh_A          418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV-IRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAE  495 (529)
T ss_dssp             --------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHH-HHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSHHHHH
T ss_pred             hcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHH-HhccCCccHHHHHHcCCc-hHHHHHHHHHHHHHhcCHHHHH
Confidence                                455666778776666554 446799999999999875 4578899999999999999999


Q ss_pred             HHHHcChhHHHHHhhccCchhHHHH
Q 008585          520 LMISYGAIGYLKKLSEMDIPGARKL  544 (560)
Q Consensus       520 ~i~~~g~i~~L~~L~~~~~~~akkl  544 (560)
                      .+.+.|+++.|.+|.+.++++.++.
T Consensus       496 ~i~~~~~~~~L~~l~~~~~~~v~~~  520 (529)
T 1jdh_A          496 AIEAEGATAPLTELLHSRNEGVATY  520 (529)
T ss_dssp             HHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred             HHHHcCChHHHHHHhcCCCHHHHHH
Confidence            9999999999999999998875544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.3e-32  Score=296.23  Aligned_cols=388  Identities=18%  Similarity=0.187  Sum_probs=335.1

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~  230 (560)
                      ...++.|+..|+++++..+..|+..|.+++.++ .++..+... |+++.|+++|+++ +++++..|+.+|.+++.+++++
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~   94 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence            445899999999999999999999999999744 455556654 8899999999765 7999999999999999988899


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-C
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-V  308 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~  308 (560)
                      ..+.+.|+++.|+++|+++++.++..++++|.+++.+ ++.+..+.+.|+++.|+.+++++++.++..++.+|++++. +
T Consensus        95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~  174 (529)
T 1jdh_A           95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999886 5667788899999999999999999999999999999996 5


Q ss_pred             chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (560)
Q Consensus       309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n  386 (560)
                      ++++..+.+.|+++.++.+++++++...++.++.+|.+++.+ +.++..+.+.|+++.|+.++.+  +.++..++++|.|
T Consensus       175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~  253 (529)
T 1jdh_A          175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            799999999999999999999887767888899999999985 5678889999999999999976  4678999999999


Q ss_pred             hhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHcc--CCHHHHHHHHH
Q 008585          387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQ  463 (560)
Q Consensus       387 la~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s--~~~~v~~~A~~  463 (560)
                      ++....... ...++++.|+.++.++++.++..|+++|++|+.+ ++.+..+.+.|+++.|++++..  .++.++..|+.
T Consensus       254 l~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~  332 (529)
T 1jdh_A          254 LSDAATKQE-GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HHTTCTTCS-CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhcCChhhH-HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence            998211110 1236799999999999999999999999999976 6799999999999999999975  34789999999


Q ss_pred             HHHHhcCCChh---hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchh
Q 008585          464 AISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG  540 (560)
Q Consensus       464 aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~  540 (560)
                      +|++|+.+.+.   .+..+.+.++++.|+++|.++....++..++.++.+++.++..+..+.+.|+++.|..++..+++.
T Consensus       333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  412 (529)
T 1jdh_A          333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence            99999865432   234455678999999999987545688899999999999999999999999999999998765544


Q ss_pred             HHH
Q 008585          541 ARK  543 (560)
Q Consensus       541 akk  543 (560)
                      .++
T Consensus       413 v~~  415 (529)
T 1jdh_A          413 TQR  415 (529)
T ss_dssp             HC-
T ss_pred             HHH
Confidence            443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=289.90  Aligned_cols=320  Identities=18%  Similarity=0.183  Sum_probs=274.0

Q ss_pred             hchHHHHHHHHcc------------CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCH----------HHHHHhhcCCC-
Q 008585          153 HGNTRELLARLQI------------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI----------AALVQLLTATS-  209 (560)
Q Consensus       153 ~~~i~~Ll~~L~~------------~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v----------~~Lv~lL~~~~-  209 (560)
                      ...++.|+..|+.            ++++.+.+|+.+|.+++..+++......+.|.+          +.+++++.+.. 
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            3357888888875            457999999999999999888776666666666          66777777652 


Q ss_pred             -HH-----HHH-------HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-----------CCHHHHHHHHHHHHHhh
Q 008585          210 -PR-----IRE-------KTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLS  265 (560)
Q Consensus       210 -~~-----v~~-------~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~La  265 (560)
                       .+     +++       +|+++|.+++.++++|..+++.|++++|+.+|..           .++.++..|+++|.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence             22     555       9999999999998899999999999999999952           24678999999999999


Q ss_pred             CChh-hHHHHHhCC-ChHHHHHHhccCChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhh-cCCchhHHHHH
Q 008585          266 MSAE-MARAIVGHG-GVRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYA  340 (560)
Q Consensus       266 ~~~~-~~~~l~~~g-~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a  340 (560)
                      .+++ ++..+...+ +++.|+.+|++++++++..|+++|+||+..  ++++..+.+.|+++.|+++|. +++. .+++.+
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~-~v~~~A  307 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSV  307 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH-HHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH-HHHHHH
Confidence            8754 666676554 599999999999999999999999999974  689999999999999999864 4554 899999


Q ss_pred             HHHHHHHccCChhHHHHHH-hCCCHHHHHHhccCC------ccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHH
Q 008585          341 AECLQNLTASNENLRRSVV-SEGGIRSLLAYLDGP------LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHV  408 (560)
Q Consensus       341 ~~~L~~La~~~~~~~~~i~-~~g~l~~L~~ll~~~------~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~l  408 (560)
                      +.+|+||+.+++.++..+. ..|+++.|++++.++      .+++.|+++|+|++.     ++++..+.+.|+++.|+.+
T Consensus       308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L  387 (458)
T 3nmz_A          308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH  387 (458)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence            9999999996666777777 799999999999762      278999999999983     4667888999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh
Q 008585          409 LKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ  473 (560)
Q Consensus       409 L~~~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~  473 (560)
                      |++++..+++.|+++|+|++ .+++.+..+.+.|+++.|++++.+++..+++.|+++|.+|+.+.+
T Consensus       388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999 569999999999999999999999999999999999999996543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=7.6e-33  Score=288.49  Aligned_cols=359  Identities=18%  Similarity=0.201  Sum_probs=282.8

Q ss_pred             hhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC------------CHHHHHHHHH
Q 008585          151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT------------SPRIREKTVT  218 (560)
Q Consensus       151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~------------~~~v~~~A~~  218 (560)
                      .....+..++..+.+.+.+   +....|..+.. +++.+..+++.|.+|.|+++|+..            +++++..|++
T Consensus        29 ~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~  104 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKD---DMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA  104 (458)
T ss_dssp             ----------------CCH---HHHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHH---HHHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHH
Confidence            3444577788888777766   36667777766 444667788999999999999863            2799999999


Q ss_pred             HHHHHhcCCc-hHHHHHhCCCH----------HHHHHhhhcCC--HH-----HHH-------HHHHHHHHhhCChhhHHH
Q 008585          219 VICSLAESGS-CENWLVSEGVL----------PPLIRLVESGS--TV-----GKE-------KATISLQRLSMSAEMARA  273 (560)
Q Consensus       219 ~L~~La~~~~-~~~~l~~~g~i----------~~Lv~lL~~~~--~~-----~~~-------~a~~~L~~La~~~~~~~~  273 (560)
                      +|.+|+...+ ......+.|++          +.+++++.+..  .+     +++       +|+++|.+++.+++++..
T Consensus       105 al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~  184 (458)
T 3nmz_A          105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA  184 (458)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999988654 44555555555          55666666542  11     444       899999999999999999


Q ss_pred             HHhCCChHHHHHHhcc-----------CChHHHHHHHHHHHHhcCCc-hhHHHHHh-cCcHHHHHHHhhcCCchhHHHHH
Q 008585          274 IVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYA  340 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a  340 (560)
                      +.+.|++++|+.++..           .++.++..|+++|.||+.++ +++..+.+ .|++|.|+.+|.++++ ++++.|
T Consensus       185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~-~v~~~A  263 (458)
T 3nmz_A          185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI  263 (458)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH-HHHHHH
T ss_pred             HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH-HHHHHH
Confidence            9999999999999952           24678999999999999865 46666654 5669999999998886 899999


Q ss_pred             HHHHHHHccC-ChhHHHHHHhCCCHHHHHHhc-cC--CccHHHHHHHHHHhhc-c-ccHHHHH-hCCcHHHHHHHHhcCC
Q 008585          341 AECLQNLTAS-NENLRRSVVSEGGIRSLLAYL-DG--PLPQESAVGALRNLVG-S-VSQEVLI-SLGFFPRLVHVLKAGS  413 (560)
Q Consensus       341 ~~~L~~La~~-~~~~~~~i~~~g~l~~L~~ll-~~--~~~~~~a~~~L~nla~-~-~~~~~l~-~~~~i~~Lv~lL~~~~  413 (560)
                      +++|+||+.. ++.++..+.+.|+++.|+++| .+  +.+++.++.+|+||+. . +++..+. ..|+++.|+.+|.+++
T Consensus       264 ~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~  343 (458)
T 3nmz_A          264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS  343 (458)
T ss_dssp             HHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCC
Confidence            9999999985 678899999999999999975 43  4678999999999998 4 5666666 7899999999999765


Q ss_pred             H----HHHHHHHHHHHHHhC----ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCCh
Q 008585          414 L----GAQQAAASALCRVCT----SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV  485 (560)
Q Consensus       414 ~----~v~~~A~~aL~~La~----~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v  485 (560)
                      +    .+++.|+++|+|++.    +++++..+.+.|+++.|++++.+++..+++.|+++|++|+...+..+..+.+.|++
T Consensus       344 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I  423 (458)
T 3nmz_A          344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV  423 (458)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHH
T ss_pred             CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            4    599999999999994    78999999999999999999999999999999999999996544444555567999


Q ss_pred             HHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585          486 PNLVQLLDPSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       486 ~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                      +.|+.+|.+++ +.+++.+..+|.+|+.+.
T Consensus       424 ~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          424 SMLKNLIHSKH-KMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHTTTTCSS-HHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCCC-HHHHHHHHHHHHHHHcCC
Confidence            99999998864 457899999999998654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-31  Score=292.61  Aligned_cols=386  Identities=21%  Similarity=0.209  Sum_probs=335.8

Q ss_pred             chHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHH
Q 008585          154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN  231 (560)
Q Consensus       154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~  231 (560)
                      ..++.++..|..+ +++.+..|+..|..++.. ++++..+.+.|+++.|+++|+++++.++..|+++|.+++.+. +.+.
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~  134 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  134 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence            3588899999876 889999999999988864 558888889999999999999999999999999999999875 4778


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCC-hHHHHHHHHHHHHhcCCc
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKNISAVP  309 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~nLa~~~  309 (560)
                      .+.+.|+++.|+++|+++++.++..++.+|.+++. +++++..+.+.|+++.|+.++++.+ ...+..++.+|+|++.++
T Consensus       135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~  214 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS  214 (644)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc
Confidence            88899999999999999999999999999999986 6889999999999999999998754 567788999999999999


Q ss_pred             hhHHHHHhcCcHHHHHHHhhc---------------------------------------CCchhHHHHHHHHHHHHccC
Q 008585          310 EVRQMLAEEGIVSVMIKLLDC---------------------------------------GILLGSKEYAAECLQNLTAS  350 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~---------------------------------------~~~~~v~~~a~~~L~~La~~  350 (560)
                      +++..+.+.|+++.++.++.+                                       ++. .+++.++++|++|+..
T Consensus       215 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~-~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          215 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCN  293 (644)
T ss_dssp             THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence            999999998888877665543                                       443 7888889999999888


Q ss_pred             ChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhcc-c----cHHHHHhCCcHHHHHHHHhcCC-HHHHHHH
Q 008585          351 NENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGS-V----SQEVLISLGFFPRLVHVLKAGS-LGAQQAA  420 (560)
Q Consensus       351 ~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~-~----~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A  420 (560)
                      ++.+++.+.+.|+++.|+.++.+    +.++..|+++|+|++.. .    .+..+...|+++.|+++|.+.+ +.++..|
T Consensus       294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a  373 (644)
T 2z6h_A          294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT  373 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence            78888999999999999999964    47899999999999972 1    3455778999999999999875 7999999


Q ss_pred             HHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC----------------------CHHHHHHHHHHHHHhcCCChhhHHH
Q 008585          421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK----------------------PNSVREVAAQAISSLVTLPQNCREV  478 (560)
Q Consensus       421 ~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~----------------------~~~v~~~A~~aL~~L~~~~~~~~~~  478 (560)
                      +++|+|++.+++.+..+.+.|+++.|++++.+.                      +.+++..++.+|++|+.++.++. .
T Consensus       374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~-~  452 (644)
T 2z6h_A          374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI-V  452 (644)
T ss_dssp             HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHH-H
T ss_pred             HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHH-H
Confidence            999999999988889999999999999999753                      34577889999999998776654 4


Q ss_pred             hhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHH
Q 008585          479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARK  543 (560)
Q Consensus       479 ~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akk  543 (560)
                      +.+.++++.|+.+|.+.+. .++..+..+|.+++.++..+..|.+.|+++.|.++.+.+++..++
T Consensus       453 l~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~  516 (644)
T 2z6h_A          453 IRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT  516 (644)
T ss_dssp             HHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred             HHhCCcHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence            5567999999999998754 478899999999999999999999999999999999998887644

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1e-31  Score=283.20  Aligned_cols=383  Identities=16%  Similarity=0.161  Sum_probs=327.2

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHh--hChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC-chH
Q 008585          156 TRELLARLQIGHLEAKHKALDSLVEAMK--EDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESG-SCE  230 (560)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~--~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~-~~~  230 (560)
                      ++.++..|++++++.+..|+..|..++.  .++.. ..+++. |+++.|+++|+++ ++.+|..|+++|.+++... +..
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            7789999999999999999999999875  33333 445666 8999999999998 7999999999999999865 466


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCC
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV  308 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~  308 (560)
                      ..+++.|+++.|+++|+++++.+++.|+++|.+++.+ ++.+..+.+.|+++.|+.++.+ .++.++..++++|++++.+
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            7788899999999999999999999999999999886 5678888899999999999995 7899999999999999964


Q ss_pred             c--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585          309 P--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (560)
Q Consensus       309 ~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L  384 (560)
                      .  .....+. .++++.+++++.++++ .++..++++|.+++...+..+..+.+.|+++.|+.++.+  +.++..++++|
T Consensus       181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  258 (450)
T 2jdq_A          181 KSPPPEFAKV-SPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV  258 (450)
T ss_dssp             SSSCCCGGGT-GGGHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHccCCH-HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence            3  3333333 7899999999998886 899999999999999877778888899999999999976  56889999999


Q ss_pred             HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585          385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                      ++++.  +...+.+.+.|+++.|+.+|.++++.++..|+++|++++. +++..+.+.+.|+++.|++++.++++.+|..|
T Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a  338 (450)
T 2jdq_A          259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA  338 (450)
T ss_dssp             HHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99998  2345567788999999999999999999999999999996 57778888889999999999999999999999


Q ss_pred             HHHHHHhcCC-C-hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChh------------hHHHHHHcChh
Q 008585          462 AQAISSLVTL-P-QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKK------------CKKLMISYGAI  527 (560)
Q Consensus       462 ~~aL~~L~~~-~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~------------~r~~i~~~g~i  527 (560)
                      +++|++++.+ . ...+.++ +.+.++.|+.++++.+ ..++..++.+|.+++....            ....+.+.|++
T Consensus       339 ~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~  416 (450)
T 2jdq_A          339 AWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMD-SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL  416 (450)
T ss_dssp             HHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSC-HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred             HHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence            9999999853 3 4444444 6789999999999764 4578899999988875332            34678899999


Q ss_pred             HHHHHhhccCchhHHH
Q 008585          528 GYLKKLSEMDIPGARK  543 (560)
Q Consensus       528 ~~L~~L~~~~~~~akk  543 (560)
                      +.|..|.+.+++..++
T Consensus       417 ~~l~~l~~~~~~~v~~  432 (450)
T 2jdq_A          417 DKIEFLQSHENQEIYQ  432 (450)
T ss_dssp             HHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHH
Confidence            9999998776665443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.3e-32  Score=297.18  Aligned_cols=383  Identities=18%  Similarity=0.185  Sum_probs=333.8

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      ..++.|+..|+++++.++..|+..|.+++.+++ ++..++.. |+++.|+++|.++ +++++..|+.+|.+|+.+++.+.
T Consensus        14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~   92 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   92 (644)
T ss_dssp             TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence            358999999999999999999999999998664 55566654 7899999999875 79999999999999999888999


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP  309 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~  309 (560)
                      .+.+.|+++.|+++|+++++.++..|+++|.+|+.+ ++.+..+.+.|+++.|+.+++++++.++..++.+|++++. ++
T Consensus        93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~  172 (644)
T 2z6h_A           93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  172 (644)
T ss_dssp             HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999876 5667788899999999999999999999999999999996 78


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl  387 (560)
                      +++..+.+.|+++.|+.++.+++...+++.++.+|++++.+ +.++..+++.|+++.|+.++.+  +.++..++++|.|+
T Consensus       173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL  251 (644)
T 2z6h_A          173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  251 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999877657889999999999974 5678899999999999999976  56789999999999


Q ss_pred             hccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHH
Q 008585          388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQA  464 (560)
Q Consensus       388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~a  464 (560)
                      +...... ....++++.|+.+|.++++.++..|+++|++|+.. ++.+..+.+.|+++.|++++...  .+.++..|+.+
T Consensus       252 ~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          252 SDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             GGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            9821111 11236799999999999999999999999999976 68899999999999999999863  37899999999


Q ss_pred             HHHhcCCChh---hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCch
Q 008585          465 ISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIP  539 (560)
Q Consensus       465 L~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~  539 (560)
                      |.+|+...+.   .+..+.+.++++.|+++|.+.....+++.++.++.+|+.++.++..+.+.|+++.|.+++..++.
T Consensus       331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~  408 (644)
T 2z6h_A          331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ  408 (644)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccch
Confidence            9999865332   23334467889999999998754568889999999999999999999999999999999876543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.9e-31  Score=285.13  Aligned_cols=361  Identities=17%  Similarity=0.233  Sum_probs=319.5

Q ss_pred             hchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585          153 HGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (560)
                      ...++.|+..|+.++ ++.+..|+.+|.+++.++++++..+++.|+++.|+.+|+++++.+++.|+++|++|+.+.+ ++
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            456899999999887 9999999999999999889999999999999999999999999999999999999998765 78


Q ss_pred             HHHHhCCCHHHHHHhh-hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585          231 NWLVSEGVLPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (560)
                      ..+...|++++|+.+| .+.+..++..++++|.+|+...+........|+++.|+.++.++++.++..++++|.+++..+
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999 667899999999999999987544444556899999999999999999999999999999765


Q ss_pred             -hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHH
Q 008585          310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALR  385 (560)
Q Consensus       310 -~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~  385 (560)
                       +....+.+.|+++.|+.++.++++ .++..|+++|++|+.+++...+.+++.|+++.|+.++.+   +.++..|+++|+
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~  354 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELLLHPSP-SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS  354 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHcCCCh-hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence             445678889999999999999886 899999999999999888888889999999999999965   457899999999


Q ss_pred             Hhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585          386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       386 nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                      |++.  ......+.+.|+++.|+.+|.++++.++..|+++|++++..  ++....+.+.|+++.|+.++..+++.++..+
T Consensus       355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a  434 (528)
T 4b8j_A          355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC  434 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            9997  34456778899999999999999999999999999999954  7889999999999999999999999999999


Q ss_pred             HHHHHHhcCCChh-----------hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585          462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                      +.+|.+|+...+.           ...++.+.+++..+..+.++.+ +.+++.+..++..+....
T Consensus       435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~-~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          435 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN-NEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCc
Confidence            9999999854332           4566777888999999887654 458889999998887644

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.5e-30  Score=292.16  Aligned_cols=385  Identities=22%  Similarity=0.216  Sum_probs=337.5

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENW  232 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~  232 (560)
                      ..++.|+..|+++++..+..|+.+|.+++...+..+..+.+.|+++.|+++|++++..+++.++.+|..++.. ++.+..
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~  313 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  313 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence            4688999999999999999999999999998888888888899999999999999999999999999999975 458889


Q ss_pred             HHhCCCHHHHHHhhhcCCH-HHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585          233 LVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (560)
                      +.+.|+++.|+++|++++. ..+..++.+|.+|+..++++..+++.|+++.|+.++.++++.++..++++|.+++.....
T Consensus       314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~  393 (780)
T 2z6g_A          314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  393 (780)
T ss_dssp             HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence            9999999999999998754 456788999999999889999999999999999999999999999999999999864422


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---C-ccHHHHHHHHHHh
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---P-LPQESAVGALRNL  387 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~-~~~~~a~~~L~nl  387 (560)
                      .  ....++++.|++++.+.+. .++..|+++|++|+..++..++.+.+.|+++.|++++.+   + .++..|+++|+|+
T Consensus       394 ~--~~~~~~i~~Lv~lL~~~d~-~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL  470 (780)
T 2z6g_A          394 Q--EGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  470 (780)
T ss_dssp             C--SCCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             h--hhhhhHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            1  1225689999999998886 899999999999999888889999999999999999954   2 7899999999999


Q ss_pred             hc-c-c---cHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC-------
Q 008585          388 VG-S-V---SQEVLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP-------  454 (560)
Q Consensus       388 a~-~-~---~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~-------  454 (560)
                      +. . +   .+..+...++++.|+.+|.+++ +.++..|+++|+||+.+++.+..+.+.|+++.|++++.+.+       
T Consensus       471 ~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a  550 (780)
T 2z6g_A          471 TSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT  550 (780)
T ss_dssp             TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence            87 2 2   2457788999999999999876 59999999999999999888899999999999999997532       


Q ss_pred             ---------------HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585          455 ---------------NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK  519 (560)
Q Consensus       455 ---------------~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~  519 (560)
                                     ++++..++.+|++|+.++.++. .+.+.++++.|+.+|.+.+ +.++..++.+|.+|+.++..+.
T Consensus       551 a~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~-~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~  628 (780)
T 2z6g_A          551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI-VIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAE  628 (780)
T ss_dssp             C------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHH-HHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTSHHHHH
T ss_pred             hhccccchhhcccChHHHHHHHHHHHHHHhcChhhHH-HHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCHHHHH
Confidence                           4577889999999997776655 4556799999999999874 4578899999999999999999


Q ss_pred             HHHHcChhHHHHHhhccCchhHHH
Q 008585          520 LMISYGAIGYLKKLSEMDIPGARK  543 (560)
Q Consensus       520 ~i~~~g~i~~L~~L~~~~~~~akk  543 (560)
                      .|.+.|+++.|.+|.+.+++..++
T Consensus       629 ~i~~~g~i~~L~~Ll~~~~~~Vr~  652 (780)
T 2z6g_A          629 AIEAEGATAPLTELLHSRNEGVAT  652 (780)
T ss_dssp             HHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHH
Confidence            999999999999999988876543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.7e-30  Score=280.22  Aligned_cols=361  Identities=15%  Similarity=0.205  Sum_probs=318.9

Q ss_pred             hchHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chH
Q 008585          153 HGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~  230 (560)
                      ...++.|+..|.++ +++.+..|+..|.+++..+++....+++.|+++.|+.+|+++++.+++.|+++|++++.+. +++
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            35689999999987 8999999999999999988888888889999999999999999999999999999999886 488


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-  308 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-  308 (560)
                      ..+...|+++.|+.++.+.+..++..++++|.+|+.+. +........++++.|+.++.++++.++..++++|.+++.. 
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  288 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  288 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence            88899999999999999999999999999999999764 4444556689999999999999999999999999999975 


Q ss_pred             chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (560)
Q Consensus       309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n  386 (560)
                      ++....+.+.|+++.|+.++.++++ .++..++++|++++.+++...+.+++.|+++.|+.++.+  +.++..|+++|+|
T Consensus       289 ~~~~~~~~~~~~v~~Lv~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~  367 (530)
T 1wa5_B          289 QEAIQAVIDVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  367 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHCCCCh-hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            5678888889999999999998886 899999999999999888888888999999999999987  4679999999999


Q ss_pred             hhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--h--hHHHHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585          387 LVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--A--EMKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       387 la~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~--~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~  460 (560)
                      ++.  +.....+.+.|+++.|+.+|.++++.++..|+++|++++..  +  +..+.+.+.|+++.|+.++.+.++.++..
T Consensus       368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  447 (530)
T 1wa5_B          368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV  447 (530)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence            997  34456677899999999999999999999999999999853  4  78888899999999999999999999999


Q ss_pred             HHHHHHHhcCCChh-----------hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585          461 AAQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       461 A~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                      ++.+|.+++...++           ....+.+.++++.|..++.+.+ ..+++.+..++.++....
T Consensus       448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~-~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN-DKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC-HHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCCcc
Confidence            99999999854322           2345667888999999888764 457889999998887544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.98  E-value=2.8e-30  Score=272.25  Aligned_cols=358  Identities=17%  Similarity=0.241  Sum_probs=312.1

Q ss_pred             chHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHH
Q 008585          154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CEN  231 (560)
Q Consensus       154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~  231 (560)
                      ..++.++..|+++ +++.+..|+..|.+++..++++...+++.|+++.|+++|+++++.+++.|+++|++++.+.+ .+.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            4588999999988 89999999999999999888888888889999999999999999999999999999999875 888


Q ss_pred             HHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCCh--hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 008585          232 WLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (560)
                      .+++.|+++.|++++++ .+..++..++++|.+++.+.  .....+. .++++.|+.++.++++.++..++++|.+++.+
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            89999999999999996 68999999999999998753  3333333 78999999999999999999999999999975


Q ss_pred             -chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHH
Q 008585          309 -PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALR  385 (560)
Q Consensus       309 -~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~  385 (560)
                       ++....+.+.|+++.++.++.++++ .++..++++|++++.+++..++.+.+.|+++.|+.++.+  +.++..|+++|+
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~  301 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS  301 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCch-hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             4778888889999999999998886 899999999999999888888888899999999999987  468999999999


Q ss_pred             Hhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585          386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       386 nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                      |++.  +...+.+.+.|+++.|+.+|.++++.++..|+++|++++.  +++..+.+.+.|+++.|++++.++++.++..|
T Consensus       302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  381 (450)
T 2jdq_A          302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA  381 (450)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence            9997  3455667788999999999999999999999999999985  46778888899999999999999999999999


Q ss_pred             HHHHHHhcCCChh-----------hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585          462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (560)
Q Consensus       462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~  514 (560)
                      +++|.+++...++           ....+.+.++++.|..++++. ...+++.+..++.++..+
T Consensus       382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE-NQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH-HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCCc
Confidence            9999999854332           234555678888888887764 345788888888877543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=3.3e-30  Score=289.31  Aligned_cols=387  Identities=18%  Similarity=0.181  Sum_probs=333.0

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~  230 (560)
                      ...++.|+..|.++++.++..|+..|.+++... .+...+... |+++.|+++|+++ +++++..|+.+|.+|+.+++++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            446889999999999999999999999998744 455566644 7899999999865 8999999999999999988888


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-C
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-V  308 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~  308 (560)
                      ..+.+.|+++.|+++|+++++.++..|+++|.+|+.+ ++.+..+.+.|+++.|+.++.++++.++..++.+|++++. +
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999999886 5667777789999999999999999999999999999995 6


Q ss_pred             chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (560)
Q Consensus       309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n  386 (560)
                      ++++..+.+.|+++.|+.++++++....++.++.+|.+|+.. +.++..+++.|+++.|+.++.+  +.++..++++|.+
T Consensus       308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~  386 (780)
T 2z6g_A          308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  386 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            799999999999999999999887656778899999999975 5668889999999999999976  4578999999999


Q ss_pred             hhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHcc-CC-HHHHHHHHH
Q 008585          387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA-KP-NSVREVAAQ  463 (560)
Q Consensus       387 la~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s-~~-~~v~~~A~~  463 (560)
                      ++..... .....++++.|+.+|.+.++.++..|+++|++|+.. ++.+..+.+.|+++.|++++.. .+ +.++..|+.
T Consensus       387 L~~~~~~-~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~  465 (780)
T 2z6g_A          387 LSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  465 (780)
T ss_dssp             HHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Hhccchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence            9972111 011246799999999999999999999999999976 6888999999999999999975 33 489999999


Q ss_pred             HHHHhcCCChh---hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchh
Q 008585          464 AISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG  540 (560)
Q Consensus       464 aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~  540 (560)
                      +|++|+.....   .+..+.+.++++.|+.+|.+.....+++.++.+|.+|+.++.++..+.+.|+++.|++++..++++
T Consensus       466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  545 (780)
T 2z6g_A          466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD  545 (780)
T ss_dssp             HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence            99999864433   233455678999999999987655788899999999999999999999999999999998765544


Q ss_pred             HH
Q 008585          541 AR  542 (560)
Q Consensus       541 ak  542 (560)
                      .+
T Consensus       546 ~~  547 (780)
T 2z6g_A          546 TQ  547 (780)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=7.2e-30  Score=258.51  Aligned_cols=264  Identities=19%  Similarity=0.213  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-----------CCHHHHHHHHHHHHHhhCCh-hhHHHHHhC
Q 008585          210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLSMSA-EMARAIVGH  277 (560)
Q Consensus       210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~-~~~~~l~~~  277 (560)
                      ...+..|+++|.+++.++++|..+++.|++++|+.+|..           .++.++..|+++|.+|+.+. +++..+...
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            345568999999999998899999999999999999953           24678999999999999864 477777665


Q ss_pred             CC-hHHHHHHhccCChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHh-hcCCchhHHHHHHHHHHHHccCChh
Q 008585          278 GG-VRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       278 g~-i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL-~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                      ++ ++.|+.+|++++++++..|+++|+||+..  ++++..+.+.|+++.|+++| .+++. .+++.++.+|+||+..++.
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHHccChh
Confidence            55 99999999999999999999999999974  68999999999999999986 44554 8999999999999997777


Q ss_pred             HHHHHH-hCCCHHHHHHhccCC------ccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 008585          354 LRRSVV-SEGGIRSLLAYLDGP------LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA  421 (560)
Q Consensus       354 ~~~~i~-~~g~l~~L~~ll~~~------~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~  421 (560)
                      ++..+. ..|+++.|++++.++      .+++.|+++|+|++.     ++++..+.+.|+++.|+.+|++++..+++.|+
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~  284 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC  284 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence            777787 799999999999762      278999999999994     46778889999999999999999999999999


Q ss_pred             HHHHHHh-CChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChh
Q 008585          422 SALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN  474 (560)
Q Consensus       422 ~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~  474 (560)
                      ++|+|++ .+++.++.+.+.|+++.|++++.+++..+++.|+++|.+|+.+.++
T Consensus       285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            9999999 5689999999999999999999999999999999999999976555

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=2.3e-28  Score=247.45  Aligned_cols=260  Identities=20%  Similarity=0.226  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCCc-hHHHHHhC-
Q 008585          170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGS-CENWLVSE-  236 (560)
Q Consensus       170 ~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~-~~~~l~~~-  236 (560)
                      .+.+|+.+|.+++.+ ++++..+++.|++++|+.+|..           .++.+|+.|+++|.+|+..++ ++..+... 
T Consensus        48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            345788999999874 8899999999999999999952           237899999999999998876 77777554 


Q ss_pred             CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhcC-CchhH
Q 008585          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISA-VPEVR  312 (560)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~-~~~~~  312 (560)
                      |++|.|+++|+++++.+++.|+++|.+|+..  ++++..+.+.|+++.|+++| +++++.++..++.+|+||+. .++++
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            5599999999999999999999999999874  67899999999999999975 66789999999999999998 67889


Q ss_pred             HHHH-hcCcHHHHHHHhhcCCch---hHHHHHHHHHHHHcc---CChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHH
Q 008585          313 QMLA-EEGIVSVMIKLLDCGILL---GSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA  383 (560)
Q Consensus       313 ~~i~-e~g~v~~L~~lL~~~~~~---~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~  383 (560)
                      ..+. +.|+++.|++++.++++.   ++++.++++|.||+.   .++..++.+.+.|+++.|+++|.+  ..+++.|+++
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence            8888 699999999999876642   489999999999997   678889999999999999999987  4579999999


Q ss_pred             HHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585          384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       384 L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~  430 (560)
                      |+|++.  ++.+..+.+.|+++.|+++|+++++.+++.|+++|.||+.+
T Consensus       287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            999995  56788899999999999999999999999999999999966

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=4.4e-25  Score=213.47  Aligned_cols=234  Identities=25%  Similarity=0.352  Sum_probs=219.5

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHH
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARA  273 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~  273 (560)
                      |+++.|+++|++++++++..|+++|.+++...+ .+..+++.|+++.|+++|++++..++..++++|.+++.+ ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            678999999999999999999999999998876 899999999999999999999999999999999999987 888999


Q ss_pred             HHhCCChHHHHHHhccCChHHHHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~  352 (560)
                      +.+.|+++.|+.+++++++.++..++++|+|++ .+++++..+.+.|+++.+++++.++++ .++..++++|++|+..++
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999 577999999999999999999999886 899999999999999888


Q ss_pred             hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      ..++.+.+.|+++.|+.++.+  +.++..++++|.+++.  +.....+.+.|+++.|+.+++++++.+++.|+++|++|+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            888889999999999999977  5689999999999997  456678889999999999999999999999999999998


Q ss_pred             CC
Q 008585          429 TS  430 (560)
Q Consensus       429 ~~  430 (560)
                      ..
T Consensus       241 ~~  242 (252)
T 4hxt_A          241 SG  242 (252)
T ss_dssp             HT
T ss_pred             cC
Confidence            55

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=6.2e-25  Score=212.91  Aligned_cols=236  Identities=18%  Similarity=0.277  Sum_probs=214.4

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCEN  231 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~  231 (560)
                      ...++.++..|++++++.+..|+..|..++..++++...+++.|+++.|+++|+++++.++..|+++|++++.. ++.+.
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            34588999999999999999999999888877777888899999999999999999999999999999999985 45899


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhH-HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP  309 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~  309 (560)
                      .+++.|+++.|+++|+++++.++..++++|.+|+.+++.+ ..+.+.|+++.|+.+++++++.++..++++|+|++. ++
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999999999999999999988887 889999999999999999999999999999999997 55


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl  387 (560)
                      +.+..+.+.|+++.|+.++.+++. .++..++++|++++..++..++.+.+.|+++.|+.++.+  +.++..|+++|.|+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            788888999999999999999876 899999999999998888888888888888888888865  56788888888887


Q ss_pred             hc
Q 008585          388 VG  389 (560)
Q Consensus       388 a~  389 (560)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            63

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=1.3e-24  Score=210.08  Aligned_cols=234  Identities=25%  Similarity=0.352  Sum_probs=219.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL  233 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l  233 (560)
                      .++.++..|++++++.+..|+..|.+++..+++++..+++.|+++.|+++|++++++++..|+++|++++.+ ++.+..+
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            478999999999999999999999999998888999999999999999999999999999999999999998 4589999


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhh-CChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cchh
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEV  311 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~  311 (560)
                      .+.|+++.++++|+++++.++..++++|.+|+ .+++++..+.+.|+++.|+.+++++++.++..++++|+|++. +++.
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999 568889999999999999999999999999999999999997 5577


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~  389 (560)
                      +..+.+.|+++.++.++.++++ .++..++++|++++..++..++.+.+.|+++.|++++.+  +.+++.|+++|+|++.
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence            7889999999999999998886 899999999999999888889999999999999999976  5689999999999997

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=1e-24  Score=211.43  Aligned_cols=233  Identities=17%  Similarity=0.251  Sum_probs=214.5

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHh-cCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHH
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARA  273 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~  273 (560)
                      ...+.+++.|++++++++..|+++|.++. .+++.+..+++.|+++.|+++|+++++.++..++++|.+++. +++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            45899999999999999999999997654 455588899999999999999999999999999999999997 6888999


Q ss_pred             HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~  352 (560)
                      +.+.|+++.|+.+++++++.++..++++|+|++.+++.+ ..+.+.|+++.+++++.+++. .++..++++|++|+..++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCCh
Confidence            999999999999999999999999999999999988887 889999999999999999886 899999999999999888


Q ss_pred             hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      ..++.+.+.|+++.|+.++.+  +.++..|+++|+|++.  +.....+.+.|+++.|+.++.++++.+++.|+++|++|+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            888889999999999999977  5689999999999996  456677889999999999999999999999999999997


Q ss_pred             C
Q 008585          429 T  429 (560)
Q Consensus       429 ~  429 (560)
                      .
T Consensus       251 ~  251 (252)
T 4db8_A          251 S  251 (252)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.6e-23  Score=222.26  Aligned_cols=378  Identities=15%  Similarity=0.124  Sum_probs=297.2

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch-HHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC-ENWL  233 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~-~~~l  233 (560)
                      +++.+...+..+..+....++-.+.+.+..+...+..+ ...+++.|.+++++  ..++..|+-+|..+...+.. ...+
T Consensus       256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si  332 (778)
T 3opb_A          256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL  332 (778)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH
Confidence            45555566655554545556566666666666665555 56888999999976  47899999999999876531 1111


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhC-CChHHHHHHhcc-CChHHHHHHHHHHHHhcCCch-
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH-GGVRPLIEICQT-GDSVSQAAAACTLKNISAVPE-  310 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~-g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~-  310 (560)
                      .  ...+.+.+.|.+++...+..|++.|..++.+++.+..+... |.++.|+.++++ ++..+..-++.+|.|++.+.+ 
T Consensus       333 ~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~  410 (778)
T 3opb_A          333 K--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE  410 (778)
T ss_dssp             H--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred             H--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence            1  15677788888877777999999999999999999998875 559999999995 788899999999999985211 


Q ss_pred             --------------------------------------hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585          311 --------------------------------------VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (560)
Q Consensus       311 --------------------------------------~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~  352 (560)
                                                            +++.+.+.|+++.|+.++.++++ .+++.++++|.+|+.. +
T Consensus       411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~-~~re~A~~aL~nLS~d-~  488 (778)
T 3opb_A          411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP-NCKQQVVRIIYNITRS-K  488 (778)
T ss_dssp             CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTS-G
T ss_pred             cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCH-HHHHHHHHHHHHHcCC-H
Confidence                                                  45677789999999999999887 8999999999999875 7


Q ss_pred             hHHHHHHhCCCHHHHHHhccCC--c---cHHHHHHHHHHhhccccHHHHHh----CCcHHHHHHHHhc--CC--------
Q 008585          353 NLRRSVVSEGGIRSLLAYLDGP--L---PQESAVGALRNLVGSVSQEVLIS----LGFFPRLVHVLKA--GS--------  413 (560)
Q Consensus       353 ~~~~~i~~~g~l~~L~~ll~~~--~---~~~~a~~~L~nla~~~~~~~l~~----~~~i~~Lv~lL~~--~~--------  413 (560)
                      .+|..+++.|+++.|+.++.+.  .   .+..|..+|.++....++..+..    .+++++|+.+|..  +.        
T Consensus       489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~  568 (778)
T 3opb_A          489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND  568 (778)
T ss_dssp             GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred             HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence            7899999999999999999762  2   68999999999997544444432    3889999999983  21        


Q ss_pred             ---H-HHHHHHHHHHHHHhCCh-----hHHHHHHhc-CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhh-HHHhhhC
Q 008585          414 ---L-GAQQAAASALCRVCTSA-----EMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC-REVKRDD  482 (560)
Q Consensus       414 ---~-~v~~~A~~aL~~La~~~-----~~~~~i~~~-g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~  482 (560)
                         + --+..|+.+|.||+..+     +.++.++.. |+++.|..++.+.+..+|..|++++++|+.++... ..++...
T Consensus       569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~  648 (778)
T 3opb_A          569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE  648 (778)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred             ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence               1 22779999999999764     467888885 99999999999999999999999999999877765 3554322


Q ss_pred             -----CChHHHHhccCCCCchhhHHHHHHHHHHhC-CChhhHHHHHHc-ChhHHHHHhhcc--Cchh
Q 008585          483 -----KSVPNLVQLLDPSPQNTAKKYAVACLASLS-PSKKCKKLMISY-GAIGYLKKLSEM--DIPG  540 (560)
Q Consensus       483 -----~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~-~~~~~r~~i~~~-g~i~~L~~L~~~--~~~~  540 (560)
                           +.++.|+.+++.++ ...+..|.++|.+++ .++...+.+++. ++++.+..+.+.  ++++
T Consensus       649 ~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~  714 (778)
T 3opb_A          649 NPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIE  714 (778)
T ss_dssp             SHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHH
T ss_pred             CchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHH
Confidence                 13678999998754 457889999999996 577777888876 899999999887  6654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.4e-23  Score=226.30  Aligned_cols=377  Identities=13%  Similarity=0.107  Sum_probs=292.8

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      +++.|...+++  .+.+..|+..|+.+..........+.  ...+.+.++|..++.+.++.|++.|..++.+++.|+.+.
T Consensus       297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~  372 (778)
T 3opb_A          297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR  372 (778)
T ss_dssp             HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence            34444444433  46777888888887654321111111  245667777877776779999999999999999988888


Q ss_pred             hC-CCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChh---------------------------------------hHHH
Q 008585          235 SE-GVLPPLIRLVES-GSTVGKEKATISLQRLSMSAE---------------------------------------MARA  273 (560)
Q Consensus       235 ~~-g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~---------------------------------------~~~~  273 (560)
                      +. |.+..|+.++++ ++..+...++.+|.|++..++                                       ++..
T Consensus       373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~  452 (778)
T 3opb_A          373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY  452 (778)
T ss_dssp             HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence            65 569999999995 677889999999999987422                                       2345


Q ss_pred             HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCch--hHHHHHHHHHHHHccC-
Q 008585          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL--GSKEYAAECLQNLTAS-  350 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~--~v~~~a~~~L~~La~~-  350 (560)
                      +.+.|+++.|+.+++++++.++..++++|.||+.++++|..+++.|+++.|+.++.+++..  ..+..|+.+|.+|+.. 
T Consensus       453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~  532 (778)
T 3opb_A          453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT  532 (778)
T ss_dssp             TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence            6678999999999999999999999999999999999999999999999999999987642  2799999999999953 


Q ss_pred             ChhHHHHHHh----CCCHHHHHHhccC-Ccc---------------HHHHHHHHHHhhc-cc-----cHHHHHhC-CcHH
Q 008585          351 NENLRRSVVS----EGGIRSLLAYLDG-PLP---------------QESAVGALRNLVG-SV-----SQEVLISL-GFFP  403 (560)
Q Consensus       351 ~~~~~~~i~~----~g~l~~L~~ll~~-~~~---------------~~~a~~~L~nla~-~~-----~~~~l~~~-~~i~  403 (560)
                      ++..   ++.    .|++++|+.+|.. +..               +..|+.+|.||+. +.     .+..++.. |+++
T Consensus       533 np~~---~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~  609 (778)
T 3opb_A          533 NPGL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS  609 (778)
T ss_dssp             CHHH---HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred             CHHH---HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence            3332   232    3889999999973 221               6799999999998 42     25667775 9999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhCChhHH-HHHHhc------CCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCChhh
Q 008585          404 RLVHVLKAGSLGAQQAAASALCRVCTSAEMK-KLVGEA------GCTPLLIKLLEAKPNSVREVAAQAISSLV-TLPQNC  475 (560)
Q Consensus       404 ~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~-~~i~~~------g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~-~~~~~~  475 (560)
                      .|..+|.+++..+|+.|+++++||+.+++.. +.+.+.      +.++.|+.++.+++.++|..|+++|++++ .++..+
T Consensus       610 ~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia  689 (778)
T 3opb_A          610 TIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA  689 (778)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH
Confidence            9999999999999999999999999987764 344322      24889999999999999999999999996 577778


Q ss_pred             HHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhCC----Ch--hhHHHHH-HcChhHHHHHhhccCc
Q 008585          476 REVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSP----SK--KCKKLMI-SYGAIGYLKKLSEMDI  538 (560)
Q Consensus       476 ~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~----~~--~~r~~i~-~~g~i~~L~~L~~~~~  538 (560)
                      +.++...+++..++.++.+. +.+.++..++.++.||+.    +.  +....+. .....+.|.++.+.++
T Consensus       690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~  760 (778)
T 3opb_A          690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD  760 (778)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred             HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence            88887768999999999883 455678889999998884    22  2333444 4566667777766654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=2.8e-21  Score=181.68  Aligned_cols=194  Identities=21%  Similarity=0.267  Sum_probs=178.2

Q ss_pred             hCCChHHHHHHhccCChHHHHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585          276 GHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (560)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~  354 (560)
                      ..++.+.|+.+++++++.++..|+++|.+++ .+++.+..+.+.|+++.+++++.++++ .++..|+++|+|++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCcHH
Confidence            4678899999999999999999999999999 467899999999999999999999886 89999999999999988898


Q ss_pred             HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       355 ~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~  430 (560)
                      ++.+++.|+++.|+.++++  +.++..|+++|+|++.  +.....+.+.|+++.|+++|+++++.++..|+++|++++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999987  4678999999999997  35556788999999999999999999999999999999977


Q ss_pred             -hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585          431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (560)
Q Consensus       431 -~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~  470 (560)
                       ++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence             8889999999999999999999999999999999999974

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=8.8e-22  Score=185.91  Aligned_cols=198  Identities=15%  Similarity=0.133  Sum_probs=176.4

Q ss_pred             hhhchHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-C
Q 008585          151 TTHGNTRELLARLQIGHL--EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-G  227 (560)
Q Consensus       151 ~~~~~i~~Ll~~L~~~~~--~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~  227 (560)
                      +....++.++..|+++++  +.+..|+..|..++.++++++..+++.|++++|+++|+++++++|+.|+++|.+|+.. +
T Consensus         5 ~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             chhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            345679999999999988  8888999999999999999999999999999999999999999999999999999985 5


Q ss_pred             chHHHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc----------------cC
Q 008585          228 SCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ----------------TG  290 (560)
Q Consensus       228 ~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~----------------~~  290 (560)
                      +++..+.+.|++++|+++|+ +++..+++.++.+|++|+..++++..+.+. ++++|+.++.                ..
T Consensus        85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence            69999999999999999998 478999999999999999999999988874 6999988652                12


Q ss_pred             ChHHHHHHHHHHHHhcC-CchhHHHHHh-cCcHHHHHHHhhcC------CchhHHHHHHHHHHHHccC
Q 008585          291 DSVSQAAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDCG------ILLGSKEYAAECLQNLTAS  350 (560)
Q Consensus       291 ~~~~~~~a~~aL~nLa~-~~~~~~~i~e-~g~v~~L~~lL~~~------~~~~v~~~a~~~L~~La~~  350 (560)
                      ++.++..|..+|+||+. ++++|+.|.+ .|+|+.|+.+++.+      ++ ..+++|+.+|+||++.
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~-k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD-KATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchh-HHHHHHHHHHHHHHhh
Confidence            56899999999999987 5699999998 57899999999852      33 7899999999999874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=5e-21  Score=179.95  Aligned_cols=196  Identities=20%  Similarity=0.303  Sum_probs=181.1

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN  231 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~  231 (560)
                      ....+.++..|++++++.+..|+..|.+++..+++++..+++.|+++.|+++|+++++.+++.|+++|++++... +.+.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            345778888999999999999999999999888999999999999999999999999999999999999999655 5888


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-c
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P  309 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~  309 (560)
                      .+++.|+++.|+++|+++++.++..++++|.+|+.+ ++....+.+.|+++.|+.+++++++.++..++++|+|++.. +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999864 66677888999999999999999999999999999999976 7


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      +.+..+.+.|+++.|++++.+++. .+++.|+++|.+|+.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENE-KIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHhc
Confidence            889999999999999999998886 899999999999985

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=184.32  Aligned_cols=192  Identities=18%  Similarity=0.213  Sum_probs=169.7

Q ss_pred             CHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCC-chHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHH
Q 008585          197 NIAALVQLLTATSP--RIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMAR  272 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~--~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~  272 (560)
                      .++.|+++|.++++  .++..|+++|.+++..+ +.+..+++.|+||+|+++|+++++.+++.|+++|.+|+. +++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999987  89999999999999654 589999999999999999999999999999999999998 589999


Q ss_pred             HHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh---cC------------CchhH
Q 008585          273 AIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CG------------ILLGS  336 (560)
Q Consensus       273 ~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~---~~------------~~~~v  336 (560)
                      .+.+.|+++.|+.+|+ ++++.++..++.+||||+..++++..+.+. +++.|++++.   ++            .+..+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 478999999999999999999999999875 7999988763   11            12379


Q ss_pred             HHHHHHHHHHHccCChhHHHHHHhC-CCHHHHHHhccC--------CccHHHHHHHHHHhhc
Q 008585          337 KEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVG  389 (560)
Q Consensus       337 ~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~ll~~--------~~~~~~a~~~L~nla~  389 (560)
                      +++|..+|.||+..+++.|+.+.+. |+++.|+.++++        ...+++|+.+|+||+.
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            9999999999999888889999876 557999999853        3468899999999986

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=8.4e-20  Score=179.88  Aligned_cols=199  Identities=18%  Similarity=0.192  Sum_probs=176.2

Q ss_pred             hHHHHHHHHccC------------CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHH-hhcCCCHHHHHHHHHHHH
Q 008585          155 NTRELLARLQIG------------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVIC  221 (560)
Q Consensus       155 ~i~~Ll~~L~~~------------~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~  221 (560)
                      .++..+..|.+.            +.+.+..|+..|.+++. +.++...+...|++++|+. +|+++++.+++.|+++|+
T Consensus        29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg  107 (296)
T 1xqr_A           29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG  107 (296)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            356666666543            34678899999999997 5558788889999999999 999999999999999999


Q ss_pred             HHhcCCc-hHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHH
Q 008585          222 SLAESGS-CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAA  298 (560)
Q Consensus       222 ~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a  298 (560)
                      +++.+++ ++..+++.|++++|+++|+++ +..++..|+|+|.+|+.+ ++....+.+.|+++.|+.+|+++++.++..|
T Consensus       108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A  187 (296)
T 1xqr_A          108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS  187 (296)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            9998765 888999999999999999964 889999999999999875 6667789999999999999999999999999


Q ss_pred             HHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH
Q 008585          299 ACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR  355 (560)
Q Consensus       299 ~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~  355 (560)
                      +++|.|++. +++.+..+++.|+++.|+.+|.+++. .+++.++.+|++|+...+...
T Consensus       188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~-~v~~~al~aL~~l~~~~~~~~  244 (296)
T 1xqr_A          188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS-PFHEHVLGALCSLVTDFPQGV  244 (296)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS-THHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh-hHHHHHHHHHHHHHhCChhHH
Confidence            999999986 57899999999999999999999887 899999999999998755443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=6.7e-20  Score=180.58  Aligned_cols=223  Identities=18%  Similarity=0.175  Sum_probs=183.3

Q ss_pred             hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHH-HhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHh
Q 008585          292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK-LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY  370 (560)
Q Consensus       292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~-lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~l  370 (560)
                      .+-+..|+..|.+++.+.++...+...|+++.++. +|.++++ .++..|+++|++++.+++..++.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~-~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            35678899999999998899999999999999999 9999886 899999999999999999999999999999999999


Q ss_pred             ccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHH
Q 008585          371 LDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTP  444 (560)
Q Consensus       371 l~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~  444 (560)
                      +.+   +.++..|+++|+|++.  +...+.+.+.|+++.|+.+|+++++.++..|+++|++++. +++.+..+.+.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            973   3579999999999998  3556778889999999999999999999999999999985 488999999999999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhC-CCh----HHHHhccCCCC-chhhHHHHHHHHHHhCCCh
Q 008585          445 LLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDD-KSV----PNLVQLLDPSP-QNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       445 ~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~-~~v----~~Lv~lL~~~~-~~~~~~~a~~~L~~L~~~~  515 (560)
                      .|+.++.+++..+++.|+.+|.+|+.+.+......... ..+    ..-..-+...+ .....+++..++-.+...+
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~  289 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP  289 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999997744332222211 111    11122333232 2356677777777766543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=4.1e-15  Score=156.53  Aligned_cols=319  Identities=14%  Similarity=0.164  Sum_probs=252.7

Q ss_pred             hhchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585          152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~  228 (560)
                      ....|+.|..+++++. .+.|+.|+..|..++++.+    .-+..++++.|+..|+.+  |.++...++.+|.++-..++
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            4556999999998765 7889999999999987544    234567899999999864  68889999999987654322


Q ss_pred             ------------------hHHH-HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hh-hHHHHH-hCCChHHHHHH
Q 008585          229 ------------------CENW-LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AE-MARAIV-GHGGVRPLIEI  286 (560)
Q Consensus       229 ------------------~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~-~~~~l~-~~g~i~~Lv~l  286 (560)
                                        ..+. +.+.+.++.|+.+|++.+..+|.++..+|..|+.+ ++ .+..+. ..+|++.|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence                              1112 23567899999999999999999999999999765 44 567777 56999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcCC-chhHHHHHhcCcHHHHHHHhhcCC---chhHHHHHHHHHHHHccCChhHHHHHHhCC
Q 008585          287 CQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVSEG  362 (560)
Q Consensus       287 l~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~v~~L~~lL~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~~g  362 (560)
                      |.+....+|..++..|.+|+.+ +++++.+.-+|+++.++.++....   ...+..-|+.+|.||...|..++..+.+.|
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            9999999999999999999974 567777777999999999998533   125788999999999999999999999999


Q ss_pred             CHHHHHHhccCC-c-------c---HHHHHHHHHHhhcc--------ccHHHHHhCCcHHHHHHHHhcC--CHHHHHHHH
Q 008585          363 GIRSLLAYLDGP-L-------P---QESAVGALRNLVGS--------VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAA  421 (560)
Q Consensus       363 ~l~~L~~ll~~~-~-------~---~~~a~~~L~nla~~--------~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~  421 (560)
                      +++.|..+++.+ +       .   ...++.+++.|..+        .++..+.+.|++..|++++...  ...++..|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999998641 1       1   12367777777763        2466888999999999998875  578999999


Q ss_pred             HHHHHHhCC-hhHHHHHHhcC---------CHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCChh
Q 008585          422 SALCRVCTS-AEMKKLVGEAG---------CTPLLIKLLEA-KPNSVREVAAQAISSLVTLPQN  474 (560)
Q Consensus       422 ~aL~~La~~-~~~~~~i~~~g---------~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~~~~~  474 (560)
                      .+++.+.++ +.++..+.+..         .+..|+.++.+ ....+|..|+.++.....+++.
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~  398 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK  398 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence            999999865 77888887643         33334444544 3577899999999999866543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.68  E-value=1.1e-13  Score=145.89  Aligned_cols=393  Identities=14%  Similarity=0.138  Sum_probs=278.2

Q ss_pred             hchHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChH-----------------HHHHH-hhCCCHHHHHHhhcCCCHHH
Q 008585          153 HGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEK-----------------NVLAV-MGRSNIAALVQLLTATSPRI  212 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~-----------------~~~~i-~~~g~v~~Lv~lL~~~~~~v  212 (560)
                      ...++.|+..|+.+  |.+....++++|..+...+++                 +...+ .+.++++.|+.+|++.+..+
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v  138 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV  138 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence            33488889998754  677788889999888764432                 11233 35678999999999999999


Q ss_pred             HHHHHHHHHHHhcCCc--hHHHHHh-CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh-HHHHHhCCChHHHHHHhc
Q 008585          213 REKTVTVICSLAESGS--CENWLVS-EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQ  288 (560)
Q Consensus       213 ~~~A~~~L~~La~~~~--~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~-~~~l~~~g~i~~Lv~ll~  288 (560)
                      |..++..|..|+...+  .++.+.. .++++.|+.+|++....+|..+...|.+|+.+... +..++-.|+++.|+.+++
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            9999999999987764  6777774 48999999999999999999999999999987554 555555799999999998


Q ss_pred             cCCh----HHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCch-----hHHHH---HHHHHHHHccC-----
Q 008585          289 TGDS----VSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILL-----GSKEY---AAECLQNLTAS-----  350 (560)
Q Consensus       289 ~~~~----~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~-----~v~~~---a~~~L~~La~~-----  350 (560)
                      .+..    .+...++.+|.||.. ++.|+..|.|.|+++.|..+++.+++.     ....+   ++.++.-+...     
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            7444    788899999999997 557999999999999999999755421     12233   66677777664     


Q ss_pred             -ChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc--cccHHHHHhCC---------cHHHHHHHHhc-CC
Q 008585          351 -NENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLG---------FFPRLVHVLKA-GS  413 (560)
Q Consensus       351 -~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~--~~~~~~l~~~~---------~i~~Lv~lL~~-~~  413 (560)
                       +..++..+.+.|+++.+++++-.    ..++..|+.+++.+.+  +.+++.+.+..         ++..|+.++.+ ..
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence             33577888999999999999865    3467889999999988  35566665432         23334455554 35


Q ss_pred             HHHHHHHHHHHHHHhC-ChhHHHHHHhc----------CC---HHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHh
Q 008585          414 LGAQQAAASALCRVCT-SAEMKKLVGEA----------GC---TPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK  479 (560)
Q Consensus       414 ~~v~~~A~~aL~~La~-~~~~~~~i~~~----------g~---i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~  479 (560)
                      ..++..|+.++..+.. +++.+..+...          +.   -..|...+.+.++---..|+.+|.++..+++..++..
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~  458 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQL  458 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8889999999998874 46666666543          00   1134455556666555779999999998877776654


Q ss_pred             hh--------CCC---hHHHHhccCCCCchhhHHHHHHHHH----HhCCChhhHHHHHHcC-hhHHHHHhhccCchhHHH
Q 008585          480 RD--------DKS---VPNLVQLLDPSPQNTAKKYAVACLA----SLSPSKKCKKLMISYG-AIGYLKKLSEMDIPGARK  543 (560)
Q Consensus       480 ~~--------~~~---v~~Lv~lL~~~~~~~~~~~a~~~L~----~L~~~~~~r~~i~~~g-~i~~L~~L~~~~~~~akk  543 (560)
                      ..        +..   +..+..+|..+.+..   ..++.|+    =|..++..-+.|.+.| .+++|.....-+..+..-
T Consensus       459 l~v~l~~~~ge~~vtliq~~~~~L~~~~~~r---i~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~  535 (651)
T 3grl_A          459 LRVQLATSIGNPPVSLLQQCTNILSQGSKIQ---TRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQ  535 (651)
T ss_dssp             TTCBCCCCTTCCCCBHHHHHHHHTTTTCCHH---HHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHH
T ss_pred             HhCcccccCCCCcccHHHHHHHHHhcCCchh---HHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchH
Confidence            32        111   334455565443221   2233333    4557887777777766 588888655322222344


Q ss_pred             HHHHH
Q 008585          544 LLERL  548 (560)
Q Consensus       544 l~~~l  548 (560)
                      +++.|
T Consensus       536 lvqGL  540 (651)
T 3grl_A          536 LVQGL  540 (651)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.54  E-value=1.8e-13  Score=148.48  Aligned_cols=371  Identities=11%  Similarity=0.067  Sum_probs=252.8

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      .++.+...++..+..++..|+..|..++...+..   ......++.+..+++++++.+|..++.+|+.++.....  ...
T Consensus       204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~  278 (588)
T 1b3u_A          204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT  278 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccc
Confidence            3455555556666666777777776666543221   11123567777778777888888888888888764221  112


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (560)
                      ....++.+++++++.++.+|..++.+|..++..  ++......-...++.+..+++++++.+|..++.+|..++..-+  
T Consensus       279 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--  356 (588)
T 1b3u_A          279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--  356 (588)
T ss_dssp             HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--
T ss_pred             hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--
Confidence            335688899999999999999999999998653  2222112234456888899999999999999999999874211  


Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS  390 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~  390 (560)
                      ........++.+..+++++++ .++..++.+|..+.......   ......++.+..++.+  ..++..++.+|..++..
T Consensus       357 ~~~~~~~l~p~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~  432 (588)
T 1b3u_A          357 KDNTIEHLLPLFLAQLKDECP-EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             HHHHHHHTHHHHHHHHTCSCH-HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            111223478889999988876 89999999998887632210   1112346777777766  35788899999998861


Q ss_pred             ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585          391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (560)
Q Consensus       391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~  470 (560)
                      -..+ .....+++.+...+.+++..++..|+.+++.++..-...  ......+|.|.+++.+.+..+|..++.++..++.
T Consensus       433 ~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~  509 (588)
T 1b3u_A          433 LGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             HCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             cCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            1111 112236788888899899999999999999998542111  1124578889988888889999999999999974


Q ss_pred             CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHH
Q 008585          471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLL  545 (560)
Q Consensus       471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~  545 (560)
                      .-.. ..+.  ...++.++.++++.+ ..++..++.++..+...-+  ..+....+++.|.++.+-.+++.+..+
T Consensus       510 ~~~~-~~~~--~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~--~~~~~~~~~p~l~~l~~d~d~~vr~~a  578 (588)
T 1b3u_A          510 VCGQ-DITT--KHMLPTVLRMAGDPV-ANVRFNVAKSLQKIGPILD--NSTLQSEVKPILEKLTQDQDVDVKYFA  578 (588)
T ss_dssp             HHHH-HHHH--HHTHHHHHHGGGCSC-HHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             hcCH-HHHH--HHHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHcCCCchhHHHHH
Confidence            3221 1122  256788999988763 4588899999998875322  123345677888888766666655443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.54  E-value=1.1e-12  Score=128.71  Aligned_cols=255  Identities=14%  Similarity=0.039  Sum_probs=195.8

Q ss_pred             HhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhH
Q 008585          192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA  271 (560)
Q Consensus       192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~  271 (560)
                      ..+.+.++.|+..|+++++.+|..|+.+|+.+..          .+.++.|+++|++.++.+|..++++|..+...++..
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~   88 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   88 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            3456789999999999999999999999999872          236899999999999999999999999997544332


Q ss_pred             HHHHhCCChHHHH-HHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          272 RAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       272 ~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ..     .++.|. .++.++++.++..++++|.++.. ++..     ...+++.+..++.++++ .++..++.+|+++..
T Consensus        89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~-~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKST-NVRRATAFAISVIND  157 (280)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC--
T ss_pred             hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCH-HHHHHHHHHHHhcCC
Confidence            22     123343 24567899999999999999863 2211     12468889999998886 899999999998753


Q ss_pred             CChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008585          350 SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV  427 (560)
Q Consensus       350 ~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L  427 (560)
                                 ...++.|+.++.+  +.++..++++|+.+....       ...++.|+.+++++++.++..|+++|+++
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~  219 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR  219 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence                       2468899999977  457899999999885321       13578899999999999999999999998


Q ss_pred             hCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHH
Q 008585          428 CTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC  507 (560)
Q Consensus       428 a~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~  507 (560)
                      ..          ...++.|+.++.+++  +|..|..+|..+..           ...++.|..++.+.+++.....++..
T Consensus       220 ~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~  276 (280)
T 1oyz_A          220 KD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDK  276 (280)
T ss_dssp             TC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred             CC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence            72          357899999997644  89999999999842           13568888888776544455555544


Q ss_pred             H
Q 008585          508 L  508 (560)
Q Consensus       508 L  508 (560)
                      +
T Consensus       277 l  277 (280)
T 1oyz_A          277 L  277 (280)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.52  E-value=6.9e-13  Score=143.84  Aligned_cols=367  Identities=14%  Similarity=0.109  Sum_probs=260.9

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      ..++.+...++..++++|..|+..|..++...+..   ......++.+..+++++++.+|..|+.+|..++..-+..  .
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~  238 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence            34555556667889999999999999998654322   112356888999999999999999999999998754321  1


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC--chh
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PEV  311 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~  311 (560)
                      ....+++.+.+++++.++.+|..++.+|..++.....  .......++.++.+++++++.+|..++.+|..++..  ++.
T Consensus       239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence            2234788888999999999999999999999753211  112234578999999999999999999999998752  232


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~  389 (560)
                      +....-...++.+..++.+.++ .+|..++.+|+.++..-..   .......++.+..++.+  +.++..++.++..++.
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~-~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~  392 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQ-HVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCH-HHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence            2223335678899999988886 8999999999998752111   11122357778888876  4688888888888876


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~  467 (560)
                      ...... ....+++.+..++.+.+..++..++.++..++..  ++.    .....++.+..++.+.+..+|..|+.++..
T Consensus       393 ~~~~~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          393 VIGIRQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             HSCHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             hcCHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            222221 1245688888889888999999999999998743  111    112357888999999999999999999999


Q ss_pred             hcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHH
Q 008585          468 LVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGAR  542 (560)
Q Consensus       468 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~ak  542 (560)
                      ++......  +. ....++.+..++.+.+ ..++..++.++..++..-.  ........++.|.++++-.++..+
T Consensus       468 l~~~~~~~--~~-~~~llp~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~Vr  536 (588)
T 1b3u_A          468 LVEKFGKE--WA-HATIIPKVLAMSGDPN-YLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVR  536 (588)
T ss_dssp             HHHHHCHH--HH-HHHTHHHHHHTTTCSC-HHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHH
T ss_pred             HHHHhCch--hH-HHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCCchHH
Confidence            97432221  11 1256688888776543 3578888888887764321  222345677888888776666554

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.51  E-value=2.2e-12  Score=126.42  Aligned_cols=251  Identities=14%  Similarity=0.076  Sum_probs=195.7

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      ..++.|+..|..+++.++..|+..|..+.  ++         +.++.|+.+|+++++.+|..|+.+|+.+...++.... 
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-   90 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-   90 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence            35889999999999999999999998874  22         3578899999999999999999999999755432111 


Q ss_pred             HhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585          234 VSEGVLPPLI-RLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (560)
Q Consensus       234 ~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (560)
                          .++.+. .++++.++.++..++++|.++.. ++....     ..++.|+..+.++++.+|..++.+|.++..    
T Consensus        91 ----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----  157 (280)
T 1oyz_A           91 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND----  157 (280)
T ss_dssp             ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence                233444 24677899999999999999963 222222     235889999999999999999999998764    


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~  389 (560)
                            .++++.|+.++.+++. .++..++++|+++...++.         .++.|..++.+  +.++..++.+|+++. 
T Consensus       158 ------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~~~-  220 (280)
T 1oyz_A          158 ------KATIPLLINLLKDPNG-DVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRK-  220 (280)
T ss_dssp             -------CCHHHHHHHHTCSSH-HHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred             ------HHHHHHHHHHHcCCCH-HHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHHhC-
Confidence                  3589999999998886 8999999999998654443         26778888876  568999999999986 


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHH
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAIS  466 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~  466 (560)
                              ....++.|+..+++++  ++..|+.+|+++..          ...++.|.+++.. .++++...+..+|.
T Consensus       221 --------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          221 --------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             --------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             --------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence                    2457899999998755  88999999999864          2568999999964 56667777776664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.51  E-value=9.9e-14  Score=157.73  Aligned_cols=347  Identities=14%  Similarity=0.124  Sum_probs=235.3

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHH-Hh---hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLA-VM---GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC  229 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~-i~---~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~  229 (560)
                      ..++.++..+++++...+..++..|..++.+.+..... ..   -...++.++++++++++.+|..|+.+|..+......
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~  207 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ  207 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence            36888899999999999999999999998765433111 00   013477778888888999999999999988755431


Q ss_pred             HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 008585          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (560)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (560)
                      ...-.-.+.++.+++.+.++++.++..++++|.+++.. ++.-.... .+.++.++..+++.++.++..|+..+.+++..
T Consensus       208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~  286 (852)
T 4fdd_A          208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ  286 (852)
T ss_dssp             HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence            11001124678888889999999999999999999764 32211111 13567788888888999999999999999976


Q ss_pred             chhHHHHHh--cCcHHHHHHHh-----------hc-----------CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585          309 PEVRQMLAE--EGIVSVMIKLL-----------DC-----------GILLGSKEYAAECLQNLTASNENLRRSVVSEGGI  364 (560)
Q Consensus       309 ~~~~~~i~e--~g~v~~L~~lL-----------~~-----------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l  364 (560)
                      ...++.+..  ...++.++..+           .+           ... .++..+..+|..++...+.   .++. ..+
T Consensus       287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~-~vr~~a~~~L~~la~~~~~---~~~~-~l~  361 (852)
T 4fdd_A          287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW-NLRKCSAAALDVLANVYRD---ELLP-HIL  361 (852)
T ss_dssp             TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC-CHHHHHHHHHHHHHHHHGG---GGHH-HHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc-hHHHHHHHHHHHHHHhccH---HHHH-HHH
Confidence            544443321  34567777666           22           112 4788999999999863221   1111 235


Q ss_pred             HHHHHhccC--CccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hh--HHHHH
Q 008585          365 RSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE--MKKLV  437 (560)
Q Consensus       365 ~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~--~~~~i  437 (560)
                      +.+...+.+  +..++.|+.+|++++.... +.+  .-..+++.++..+++.++.|+..|++++++++.. ..  ....+
T Consensus       362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~  440 (852)
T 4fdd_A          362 PLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL  440 (852)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            666666665  5679999999999997211 111  2245688889999999999999999999999853 11  11111


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          438 GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       438 ~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                        .+.++.|++.+.+.++.+|..|+.+|.+++... .....++  ...++.|+..++.... .....+..++..++
T Consensus       441 --~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~-~~~~~~~~ai~~l~  511 (852)
T 4fdd_A          441 --KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQH-KNLLILYDAIGTLA  511 (852)
T ss_dssp             --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhCh-HHHHHHHHHHHHHH
Confidence              356888999998889999999999999998432 2222333  2445677777765432 23334445555443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.49  E-value=3e-13  Score=153.80  Aligned_cols=380  Identities=14%  Similarity=0.078  Sum_probs=244.0

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      ...++.++..++.++++++..|+..|..++...++......+ +.++.++.++++.++.++..|+..+..++.....+..
T Consensus       214 ~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~  292 (852)
T 4fdd_A          214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV  292 (852)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence            356777888888899999999999999999877754333222 4688888899988999999999999999987654443


Q ss_pred             HHh--CCCHHHHHHhh-----------hc-----------CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc
Q 008585          233 LVS--EGVLPPLIRLV-----------ES-----------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ  288 (560)
Q Consensus       233 l~~--~g~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~  288 (560)
                      +..  ...++.++..+           .+           .+..++..++.+|..++.....  .+. ...++.+...+.
T Consensus       293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~  369 (852)
T 4fdd_A          293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLF  369 (852)
T ss_dssp             HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhc
Confidence            211  13456666665           22           2234688899999998764221  111 124577778888


Q ss_pred             cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH
Q 008585          289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL  368 (560)
Q Consensus       289 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~  368 (560)
                      ++++.+|..|+.+|++++......-.-.-.++++.++.++.+++. .++..++++|++++...........-.+.++.++
T Consensus       370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~  448 (852)
T 4fdd_A          370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA-LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL  448 (852)
T ss_dssp             CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            899999999999999999754211111125678999999988886 8999999999999863211000001123467777


Q ss_pred             HhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhH-HHHHHhcC
Q 008585          369 AYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEM-KKLVGEAG  441 (560)
Q Consensus       369 ~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~-~~~i~~~g  441 (560)
                      ..+.+  +.++..|+++|.+++.  ...... .-..+++.|+..++..+......+..+++.++..  +.. +..+. ..
T Consensus       449 ~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~-~~  526 (852)
T 4fdd_A          449 KRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QM  526 (852)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH-HH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH-HH
Confidence            77754  6789999999999997  111110 1235677788888777777766777888887632  111 11121 23


Q ss_pred             CHHHHHHHH---ccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCC----------------CCchhhH
Q 008585          442 CTPLLIKLL---EAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDP----------------SPQNTAK  501 (560)
Q Consensus       442 ~i~~Lv~ll---~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~----------------~~~~~~~  501 (560)
                      .+|.+++..   .+.++.++ .+.+++..++.. ......+..  ..++.++.++..                .++...+
T Consensus       527 l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~--~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~  603 (852)
T 4fdd_A          527 LMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCE--PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM  603 (852)
T ss_dssp             HHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred             HHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHH
Confidence            467676433   34555564 778888888732 122222221  122333333221                1223456


Q ss_pred             HHHHHHHHHhCC--ChhhHHHHHHcChhHHHHHhhccCchhHH
Q 008585          502 KYAVACLASLSP--SKKCKKLMISYGAIGYLKKLSEMDIPGAR  542 (560)
Q Consensus       502 ~~a~~~L~~L~~--~~~~r~~i~~~g~i~~L~~L~~~~~~~ak  542 (560)
                      ..++..+..++.  ....+..+...++++.+........+..+
T Consensus       604 ~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr  646 (852)
T 4fdd_A          604 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR  646 (852)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence            667777777764  23455556578999999888766555444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.42  E-value=1.4e-11  Score=133.90  Aligned_cols=330  Identities=13%  Similarity=0.124  Sum_probs=227.5

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH-H
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-N  231 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~-~  231 (560)
                      ...++.+...+.+.++.+|..|+.++..+...+++..   .+.+.++.+.++|.++++.++..|+.+|..++.+.+.. .
T Consensus       120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence            4456778888899999999999999999998766432   23467899999999999999999999999999875411 0


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC---
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA---  307 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~---  307 (560)
                      .-...+.+..|++.+.+.++..+.....++.++... ++...     ..++.+..++++.++.++..|++++.++..   
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence            001123467788888888999999999999888753 22222     235777888888999999999999999974   


Q ss_pred             -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHH
Q 008585          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALR  385 (560)
Q Consensus       308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~  385 (560)
                       +++..+.+. ..+.+.++.++. ++. .+|+.++.+|..+...++..    +.. .+..+....++ ..++..++..+.
T Consensus       272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~-~vr~~aL~~l~~i~~~~p~~----~~~-~~~~~~~~~~d~~~Ir~~al~~L~  343 (591)
T 2vgl_B          272 KDSDYYNMLL-KKLAPPLVTLLS-GEP-EVQYVALRNINLIVQKRPEI----LKQ-EIKVFFVKYNDPIYVKLEKLDIMI  343 (591)
T ss_dssp             BTTBSHHHHH-HHTHHHHHHHTT-SCH-HHHHHHHHHHHHHHHHCCST----TTT-CTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHHHhc-CCc-cHHHHHHHHHHHHHHhChHH----HHH-HHHhheeccCChHHHHHHHHHHHH
Confidence             334433333 345677776664 554 89999999999998744431    111 11112111222 346788888888


Q ss_pred             HhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 008585          386 NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA  464 (560)
Q Consensus       386 nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~a  464 (560)
                      +++...+.+.     +++.|..++.+.+.+++..++++|++++.. +....     .+++.|++++......++..+..+
T Consensus       344 ~l~~~~nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~  413 (591)
T 2vgl_B          344 RLASQANIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVV  413 (591)
T ss_dssp             HTCCSSTHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHCChhhHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHH
Confidence            8887544432     466777888888888999999999998854 32222     347788888887777777777777


Q ss_pred             HHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585          465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (560)
Q Consensus       465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~  513 (560)
                      +..+....++.     ....+..|...+++...+..+..++.+++..+.
T Consensus       414 l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~  457 (591)
T 2vgl_B          414 IRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAE  457 (591)
T ss_dssp             HHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence            87776432222     134556677777654444456666666665543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.34  E-value=2e-11  Score=132.76  Aligned_cols=293  Identities=16%  Similarity=0.180  Sum_probs=212.8

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      +..+.++-..|++++.+.+.+++..+..+..-+.+      -..+...+++++.+++..++..+..++..++...+.  .
T Consensus        12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e--~   83 (591)
T 2vgl_B           12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD--M   83 (591)
T ss_dssp             SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH--H
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCch--H
Confidence            34477788888999999999988887766543321      113567788899999999999998888888764321  1


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cchh
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEV  311 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~  311 (560)
                      +  .-+++.+.+-|++.++.+|..|..+|+++. .++....+.     +.+..++.+.+|.+|..|+.++.++.. +++.
T Consensus        84 ~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~l~-----~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~  155 (591)
T 2vgl_B           84 A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEYLC-----EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM  155 (591)
T ss_dssp             H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHHHH-----HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred             H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHHHH-----HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh
Confidence            1  124678888899999999999999999986 455555443     788999999999999999999999975 3442


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~  389 (560)
                      .   .+.+.++.+..++.+++. .++..|+.+|.+++..++..+......+.+..|+..+.+  +..+...+.+++.++.
T Consensus       156 ~---~~~~~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~  231 (591)
T 2vgl_B          156 V---EDQGFLDSLRDLIADSNP-MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP  231 (591)
T ss_dssp             H---HHHHHHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC
T ss_pred             c---ccccHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC
Confidence            2   235788999999998886 899999999999998665321000001224556665543  5567778888877775


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC----ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT----SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI  465 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~----~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL  465 (560)
                      .+...   ...+++.+...+++.++.|+..|++++..+..    +++..+.+. ....+.|+.++. .++++|..|+.+|
T Consensus       232 ~~~~~---~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l  306 (591)
T 2vgl_B          232 KDDRE---AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNI  306 (591)
T ss_dssp             CSHHH---HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             CChHH---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHH
Confidence            22111   13467788888888999999999999999974    344444332 345677887664 7889999999999


Q ss_pred             HHhcC
Q 008585          466 SSLVT  470 (560)
Q Consensus       466 ~~L~~  470 (560)
                      ..+..
T Consensus       307 ~~i~~  311 (591)
T 2vgl_B          307 NLIVQ  311 (591)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.32  E-value=7.2e-11  Score=110.39  Aligned_cols=123  Identities=21%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHH
Q 008585          195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI  274 (560)
Q Consensus       195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l  274 (560)
                      .+.++.|+++|+++++.+|..|+..|+.+..          .+.++.|+++|+++++.++..++++|..+..        
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            3567888888888888888888888877653          2467888888888888888888888877742        


Q ss_pred             HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585          275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (560)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La  348 (560)
                        .+.++.|+.++.++++.++..++.+|.++..          .+.++.|+.++.+++. .++..++.+|+++.
T Consensus        80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~  140 (211)
T 3ltm_A           80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIG  140 (211)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHHcC
Confidence              2455777788888888888888888877653          2467777787777765 78888888887774

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.27  E-value=1.1e-10  Score=108.25  Aligned_cols=182  Identities=21%  Similarity=0.220  Sum_probs=155.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~  275 (560)
                      +..+.++++|+++++.+|..|+.+|+.+..          .+.++.|+++|+++++.++..++++|..+..         
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            568899999999999999999999998764          2468999999999999999999999998753         


Q ss_pred             hCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH
Q 008585          276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR  355 (560)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~  355 (560)
                       ...++.|+.++.++++.++..++++|.++..          ..+++.++.++.+++. .++..++.+|+++..  +   
T Consensus        75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~--~---  137 (201)
T 3ltj_A           75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD--E---  137 (201)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHTC--G---
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC--H---
Confidence             2467889999999999999999999998754          3478999999988886 899999999999863  2   


Q ss_pred             HHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          356 RSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       356 ~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                            ..++.|..++.+  +.++..|+.+|+.+..         ...++.|..+++++++.++..|..+|.++.
T Consensus       138 ------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          138 ------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                  347788888876  4688999999999853         236888999999999999999999999875

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.25  E-value=1.7e-09  Score=117.98  Aligned_cols=288  Identities=10%  Similarity=0.080  Sum_probs=189.0

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      +.....+..+++.+.+.|.-+.-.+..++..+++....     .+..+.+-|+++++.+|..|+++|+++... +    +
T Consensus        70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-~----~  139 (618)
T 1w63_A           70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-E----M  139 (618)
T ss_dssp             GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-H----H
T ss_pred             chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-H----H
Confidence            34566677778889888888888888888777653222     467888889999999999999999999842 1    2


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hh
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV  311 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~  311 (560)
                      . ..+++.+.++|++.++.+|..|+.++.++.. +++...     +.++.+..++.+.++.++..|+.+|..++... +.
T Consensus       140 ~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          140 C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence            2 2468889999999999999999999999965 344322     56778888888999999999999999998753 33


Q ss_pred             HHHHHhcCcHHHHHHHhhc---------------CCchhHHHHHHHHHHHHccCChhHHHHHHh----------------
Q 008585          312 RQMLAEEGIVSVMIKLLDC---------------GILLGSKEYAAECLQNLTASNENLRRSVVS----------------  360 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~---------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~----------------  360 (560)
                      ...+  ...++.++++|.+               .++ ..+...+.+|+.++..++...+.+.+                
T Consensus       214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~  290 (618)
T 1w63_A          214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP-FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG  290 (618)
T ss_dssp             HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH-HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence            2223  3567878777763               233 67888888888888765442211100                


Q ss_pred             ---------------------CCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHH
Q 008585          361 ---------------------EGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQ  417 (560)
Q Consensus       361 ---------------------~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~  417 (560)
                                           ..++..|..++.+  +.++..|+.+|..++.. .+..+  ......++..+.+++..++
T Consensus       291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-~p~~~--~~~~~~i~~~l~d~d~~Ir  367 (618)
T 1w63_A          291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT-DHNAV--QRHRSTIVDCLKDLDVSIK  367 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH-HHHHH--GGGHHHHHHGGGSSCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh-CHHHH--HHHHHHHHHHccCCChhHH
Confidence                                 0123334444432  44555555555555531 01111  1234455566666666666


Q ss_pred             HHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          418 QAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       418 ~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ..|..+|..++.......      .++.|...+.+.+.+++..+..+++.++
T Consensus       368 ~~alelL~~l~~~~nv~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la  413 (618)
T 1w63_A          368 RRAMELSFALVNGNNIRG------MMKELLYFLDSCEPEFKADCASGIFLAA  413 (618)
T ss_dssp             HHHHHHHHHHCCSSSTHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccHHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            666666666664422211      2355555555566666777777777766

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.24  E-value=2.9e-10  Score=105.37  Aligned_cols=182  Identities=23%  Similarity=0.188  Sum_probs=154.9

Q ss_pred             CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHH
Q 008585          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA  316 (560)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (560)
                      +..+.+++.|+++++.+|..|+.+|..+..          ...++.|+.++.++++.++..++.+|.++..         
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            467899999999999999999999998753          2457899999999999999999999988754         


Q ss_pred             hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHH
Q 008585          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQE  394 (560)
Q Consensus       317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~  394 (560)
                       ..+++.++.++.++++ .++..++.+|+++..  +         ..++.|..++.+  +.++..++.+|+.+..     
T Consensus        75 -~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           75 -ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             -GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             -HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence             3578999999998886 899999999999864  2         247788888876  4588999999999863     


Q ss_pred             HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                          ...++.|..++.+.++.++..|+.+|+++..          ...++.|..++.++++.+|..|..+|..+-
T Consensus       137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                3578899999999999999999999999953          235788889999999999999999999884

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.23  E-value=2.9e-09  Score=116.20  Aligned_cols=326  Identities=13%  Similarity=0.072  Sum_probs=234.6

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      +...+.++-..+++++...|.+++..|..+...+...      ..+....++++.+++...+..+--.+..++...+...
T Consensus        32 i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~  105 (618)
T 1w63_A           32 IQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH  105 (618)
T ss_dssp             HHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH
Confidence            3445666666777777777888877777665432211      1246667788888888998888888888887654211


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cch
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPE  310 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~  310 (560)
                      .    -++..+.+-|++.++.++..|+++|+++.. ++....     .++.+..++.+.+|.+|..|+.++.++.. +++
T Consensus       106 ~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~~-----l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~  175 (618)
T 1w63_A          106 L----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCRD-----LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE  175 (618)
T ss_dssp             H----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred             H----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence            1    147788888999999999999999999974 443333     34888899999999999999999999975 444


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-----------------C
Q 008585          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-----------------G  373 (560)
Q Consensus       311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-----------------~  373 (560)
                      ..     .+.++.+..++.+.+. .++..|+.+|..++..++.....+  ...++.++.+|.                 +
T Consensus       176 ~v-----~~~~~~l~~lL~D~d~-~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~  247 (618)
T 1w63_A          176 LM-----EMFLPATKNLLNEKNH-GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISD  247 (618)
T ss_dssp             GG-----GGGGGGTTTSTTCCCH-HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred             HH-----HHHHHHHHHHhCCCCH-hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence            33     2567778888888776 899999999999998765432222  245777776653                 3


Q ss_pred             CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHH
Q 008585          374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA------GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLI  447 (560)
Q Consensus       374 ~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv  447 (560)
                      +..+...+.+|+.++..+..   ....+++.|..++..      .+..+...|++++..+...++.+.     .+++.|.
T Consensus       248 ~~~q~~il~~L~~l~~~~~~---~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~  319 (618)
T 1w63_A          248 PFLQVRILRLLRILGRNDDD---SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG  319 (618)
T ss_dssp             HHHHHHHHHHHHHHTTTCHH---HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence            55678888999998873211   123455666666542      346889999999999876544332     3578899


Q ss_pred             HHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585          448 KLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK  515 (560)
Q Consensus       448 ~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~  515 (560)
                      .++.+.++++|..|+.+|..++...+   ..+.  .....++..+.+.+ ..++..++.++..++...
T Consensus       320 ~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~--~~~~~i~~~l~d~d-~~Ir~~alelL~~l~~~~  381 (618)
T 1w63_A          320 RFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ--RHRSTIVDCLKDLD-VSIKRRAMELSFALVNGN  381 (618)
T ss_dssp             HHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG--GGHHHHHHGGGSSC-HHHHHHHHHHHHHHCCSS
T ss_pred             HHHhCCCCchHHHHHHHHHHHHhhCH---HHHH--HHHHHHHHHccCCC-hhHHHHHHHHHHHHcccc
Confidence            99999999999999999999975432   2332  34567888888754 468999999999998754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.23  E-value=3.4e-10  Score=128.40  Aligned_cols=370  Identities=14%  Similarity=0.129  Sum_probs=235.1

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch-----
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC-----  229 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~-----  229 (560)
                      .++.+...++..+.+.+..++..|..++...++..........++.+...+.+.+..++..|+.++..++.....     
T Consensus       225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~  304 (861)
T 2bpt_A          225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL  304 (861)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            345555666788899999999999999876553322222224567777888888899999999999998765311     


Q ss_pred             -------------HHHHHhCCCHHHHHHhhhc-------CCHHHHHHHHHHHHHhhCChh--hHHHHHhCCChHHHHHHh
Q 008585          230 -------------ENWLVSEGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAE--MARAIVGHGGVRPLIEIC  287 (560)
Q Consensus       230 -------------~~~l~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~La~~~~--~~~~l~~~g~i~~Lv~ll  287 (560)
                                   -.... ..+++.++..|..       +++.++..+..+|..++....  ...     ..++.+...+
T Consensus       305 ~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l  378 (861)
T 2bpt_A          305 AQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNI  378 (861)
T ss_dssp             HHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHT
T ss_pred             hhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHc
Confidence                         01111 3467788887764       245788899999999876321  111     2346666777


Q ss_pred             ccCChHHHHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH-HHHHhCCCH
Q 008585          288 QTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR-RSVVSEGGI  364 (560)
Q Consensus       288 ~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~-~~i~~~g~l  364 (560)
                      .+.++..|..++.++..++...  +.-.... ..+++.++..+.++++ .+|..++++|++++..-...- ..-.-...+
T Consensus       379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l  456 (861)
T 2bpt_A          379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSL-QVKETTAWCIGRIADSVAESIDPQQHLPGVV  456 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHGGGSCTTTTHHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Confidence            7889999999999999999642  2112222 3478888898888876 899999999999985311000 000001236


Q ss_pred             HHHHHhccC-CccHHHHHHHHHHhhcc-c-c-HHHH--HhCCcHHHHHHHHhcCC--HHHHHHHHHHHHHHhCC--hhHH
Q 008585          365 RSLLAYLDG-PLPQESAVGALRNLVGS-V-S-QEVL--ISLGFFPRLVHVLKAGS--LGAQQAAASALCRVCTS--AEMK  434 (560)
Q Consensus       365 ~~L~~ll~~-~~~~~~a~~~L~nla~~-~-~-~~~l--~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~~La~~--~~~~  434 (560)
                      +.++..+.+ +.++..++++|.+++.. . . ...+  .-..+++.|+..+.+.+  +.++..++.++..++..  .+..
T Consensus       457 ~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~  536 (861)
T 2bpt_A          457 QACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA  536 (861)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence            667777765 56788999999998861 1 0 0001  01234677778887543  78999999999999843  3333


Q ss_pred             HHHHhcCCHHHHHHHHccC---------------CHHHHHHHHHHHHHhcCCC-hhhHHHhhhCCChHHHHhccCCCCch
Q 008585          435 KLVGEAGCTPLLIKLLEAK---------------PNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQN  498 (560)
Q Consensus       435 ~~i~~~g~i~~Lv~ll~s~---------------~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~  498 (560)
                      ..+  ...++.+++.+...               ...++..++.+|..++..- .....+..  ..++.++..+++.+.+
T Consensus       537 ~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~  612 (861)
T 2bpt_A          537 ETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLMGLFFRLLEKKDSA  612 (861)
T ss_dssp             HHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHHHHSTTGG
T ss_pred             HHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHccCCCC
Confidence            333  23567777766521               3457888999999988432 22222222  3456677777765432


Q ss_pred             hhHHHHHHHHHHhCCCh--hhHHHHHHcChhHHHHHhhccCc
Q 008585          499 TAKKYAVACLASLSPSK--KCKKLMISYGAIGYLKKLSEMDI  538 (560)
Q Consensus       499 ~~~~~a~~~L~~L~~~~--~~r~~i~~~g~i~~L~~L~~~~~  538 (560)
                      .+++.++.++..++...  .....+  ...++.|.+..+.++
T Consensus       613 ~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~  652 (861)
T 2bpt_A          613 FIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVD  652 (861)
T ss_dssp             GTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhcccc
Confidence            57778888887776432  222222  225566665554433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.22  E-value=5.3e-10  Score=104.44  Aligned_cols=153  Identities=20%  Similarity=0.253  Sum_probs=132.6

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      ..++.|+..|+++++.++..|+..|..+..           .+.++.|+++|+++++.+|..|+.+|+.+..        
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            358899999999999999999999987632           2578999999999999999999999998863        


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHH
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (560)
                        .+.++.|+++|++.++.++..++++|.++..          ...++.|+.++.++++.++..++.+|.++..      
T Consensus        80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------  141 (211)
T 3ltm_A           80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------  141 (211)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence              3468999999999999999999999999854          2466889999999999999999999998854      


Q ss_pred             HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585          314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (560)
Q Consensus       314 ~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La  348 (560)
                          ...++.|..++.++++ .++..++.+|+.+.
T Consensus       142 ----~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          142 ----ERAVEPLIKALKDEDG-WVRQSAADALGEIG  171 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhC
Confidence                3578999999988886 89999999999985

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.18  E-value=5.8e-10  Score=126.51  Aligned_cols=340  Identities=15%  Similarity=0.146  Sum_probs=225.8

Q ss_pred             hHHHHHHHHccC-------CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 008585          155 NTRELLARLQIG-------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG  227 (560)
Q Consensus       155 ~i~~Ll~~L~~~-------~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~  227 (560)
                      .++.++..+...       +...+..+...|..++...++.   +. ...++.+.+.+.+.++..|+.|+.+++.++...
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~  400 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGP  400 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC
Confidence            455556666532       2356777888888877533211   11 124666777788888999999999999999754


Q ss_pred             c--hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-------hhHHHHHhCCChHHHHHHhccCChHHHHHH
Q 008585          228 S--CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-------EMARAIVGHGGVRPLIEICQTGDSVSQAAA  298 (560)
Q Consensus       228 ~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a  298 (560)
                      .  .-...+. .+++.+++.+++.++.+|..+++++.+++..-       +...     ..++.++..+.+. +.++..+
T Consensus       401 ~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-----~~l~~l~~~l~~~-~~v~~~a  473 (861)
T 2bpt_A          401 DKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP-----GVVQACLIGLQDH-PKVATNC  473 (861)
T ss_dssp             CHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH-----HHHHHHHHHHTSC-HHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH-----HHHHHHHHHhccC-hHHHHHH
Confidence            2  1111122 46888999999999999999999999987531       1122     2357788888775 8999999


Q ss_pred             HHHHHHhcCC------chhHHHHHhcCcHHHHHHHhhcCCc-hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc
Q 008585          299 ACTLKNISAV------PEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL  371 (560)
Q Consensus       299 ~~aL~nLa~~------~~~~~~i~e~g~v~~L~~lL~~~~~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll  371 (560)
                      +++|.+++..      +.....+  ..+++.++.++.+.+. ..++..++.+++.++...+......+. ..++.++..+
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l  550 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKL  550 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHH
Confidence            9999998742      1222222  3467888888875431 378999999999998743321111111 2344455544


Q ss_pred             cC-----------------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCH-HHHHHHHHHHHHHhCC-
Q 008585          372 DG-----------------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAASALCRVCTS-  430 (560)
Q Consensus       372 ~~-----------------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~La~~-  430 (560)
                      .+                 ..++..++.+|.+++.  ...... .-..+++.++..++..+. .+++.+..++..++.. 
T Consensus       551 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~  629 (861)
T 2bpt_A          551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL  629 (861)
T ss_dssp             HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH
Confidence            31                 2356688888888886  211000 112457777888887766 8999999999999854 


Q ss_pred             -hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCC-chhhHHHHHHH
Q 008585          431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSP-QNTAKKYAVAC  507 (560)
Q Consensus       431 -~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~-~~~~~~~a~~~  507 (560)
                       .+...++  ...+|.|.+.+...+..++..+..++..++.. ......++.  ..++.++..+.+.+ +..++..++.+
T Consensus       630 ~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~  705 (861)
T 2bpt_A          630 GKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSV  705 (861)
T ss_dssp             GGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred             hhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHH
Confidence             4455554  33789999999888888999999999999833 223333332  44566777776642 34688889998


Q ss_pred             HHHhCC
Q 008585          508 LASLSP  513 (560)
Q Consensus       508 L~~L~~  513 (560)
                      +..++.
T Consensus       706 l~~l~~  711 (861)
T 2bpt_A          706 FGDIAS  711 (861)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.10  E-value=2.4e-09  Score=121.62  Aligned_cols=347  Identities=15%  Similarity=0.114  Sum_probs=228.5

Q ss_pred             chHHHHHHHHccC--CHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585          154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~  228 (560)
                      ..++.++..+.++  ++..+..++..|..++..- ++.... .-...++.+.+.+.++  +..+|..|+.++..+...-.
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3578888888888  8899999999999998753 221110 1123567778888876  68999999999999875421


Q ss_pred             -h-HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585          229 -C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (560)
Q Consensus       229 -~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (560)
                       . .........++.+...+.+.+..++..++.+|..+... ++.-........++.++..+.+.++.++..++..+.++
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence             1 11111112567777778888999999999999999753 33222233346778888888888899999999998888


Q ss_pred             cCCch----------------------hHHHHHhcCcHHHHHHHhhc-------CCchhHHHHHHHHHHHHccCChhHHH
Q 008585          306 SAVPE----------------------VRQMLAEEGIVSVMIKLLDC-------GILLGSKEYAAECLQNLTASNENLRR  356 (560)
Q Consensus       306 a~~~~----------------------~~~~i~e~g~v~~L~~lL~~-------~~~~~v~~~a~~~L~~La~~~~~~~~  356 (560)
                      +....                      ..+... ...++.+++.+..       ++. .++..+..+|..++...+.   
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~---  361 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCED---  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGG---
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcH---
Confidence            75320                      000011 3356777777752       233 6899999999998863221   


Q ss_pred             HHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-h
Q 008585          357 SVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A  431 (560)
Q Consensus       357 ~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~  431 (560)
                      .++. ..++.+...+.+  +.++..++.++++++.....+.+  .-..+++.++..+++.++.++..|++++++++.. +
T Consensus       362 ~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          362 DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            1111 234555556655  45789999999999973221111  2245788899999999999999999999999853 2


Q ss_pred             h---HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh---------------hhHHHhhhCCChHHHHhccC
Q 008585          432 E---MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ---------------NCREVKRDDKSVPNLVQLLD  493 (560)
Q Consensus       432 ~---~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~---------------~~~~~~~~~~~v~~Lv~lL~  493 (560)
                      .   ....+  ...++.|+..+.+. +.++..++.+|.+++....               ....++.  ..++.|++.+.
T Consensus       441 ~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~il~~L~~~l~  515 (876)
T 1qgr_A          441 EAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTD  515 (876)
T ss_dssp             GGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH--HHHHHHHHHTT
T ss_pred             hhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH--HHHHHHHHHHh
Confidence            1   11222  24577888888764 8899999999999983311               1112221  34577777776


Q ss_pred             CCC--chhhHHHHHHHHHHhC
Q 008585          494 PSP--QNTAKKYAVACLASLS  512 (560)
Q Consensus       494 ~~~--~~~~~~~a~~~L~~L~  512 (560)
                      ..+  ...++..++.++..++
T Consensus       516 ~~~~~~~~~r~~~~~~l~~l~  536 (876)
T 1qgr_A          516 RPDGHQNNLRSSAYESLMEIV  536 (876)
T ss_dssp             SCSSCSTTHHHHHHHHHHHHH
T ss_pred             CcCcchhhHHHHHHHHHHHHH
Confidence            542  2345656666666554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.10  E-value=3.2e-10  Score=118.87  Aligned_cols=347  Identities=13%  Similarity=0.107  Sum_probs=224.1

Q ss_pred             HHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHH--------HH---hhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008585          156 TRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVL--------AV---MGRSNIAALVQLLTATSPRIREKTVTVICS  222 (560)
Q Consensus       156 i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~--------~i---~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~  222 (560)
                      +..|+..+..+  ++.+|..|+..|.++.........        .+   .....-..|+..|.++++.+ ..++.+++.
T Consensus        37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~  115 (462)
T 1ibr_B           37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAG  115 (462)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHH
Confidence            44555666554  578888888899888754311100        00   01123445778888877777 888999999


Q ss_pred             HhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHhccC--ChHHHH
Q 008585          223 LAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTG--DSVSQA  296 (560)
Q Consensus       223 La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~  296 (560)
                      ++.......  .-.+.++.|+..+.++  ++.+++.++.+|..++.+  ++...... ...++.++..+.+.  ++.+|.
T Consensus       116 ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~  192 (462)
T 1ibr_B          116 IACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKL  192 (462)
T ss_dssp             HHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHH
T ss_pred             HHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHH
Confidence            987531110  0146789999999998  899999999999999753  21111110 12457788888887  789999


Q ss_pred             HHHHHHHHhcCC-chhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-
Q 008585          297 AAACTLKNISAV-PEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-  373 (560)
Q Consensus       297 ~a~~aL~nLa~~-~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-  373 (560)
                      .++.++.++... ++.- ......-.++.+...+.+++. .++..++.+|..++...+..-...+..+.++.++..+.+ 
T Consensus       193 ~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~  271 (462)
T 1ibr_B          193 AATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD  271 (462)
T ss_dssp             HHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999997642 1111 011111146666666766665 899999999999987443211111111445666666655 


Q ss_pred             -CccHHHHHHHHHHhhccc-cHHH------------------HH---hCCcHHHHHHHHhc-------CCHHHHHHHHHH
Q 008585          374 -PLPQESAVGALRNLVGSV-SQEV------------------LI---SLGFFPRLVHVLKA-------GSLGAQQAAASA  423 (560)
Q Consensus       374 -~~~~~~a~~~L~nla~~~-~~~~------------------l~---~~~~i~~Lv~lL~~-------~~~~v~~~A~~a  423 (560)
                       +.++..++.++.+++... ....                  +.   -..+++.++..+..       .+..++..|+.+
T Consensus       272 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~  351 (462)
T 1ibr_B          272 IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVC  351 (462)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHH
Confidence             567889999998887521 0000                  00   02345566666643       235789999999


Q ss_pred             HHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh-h-hHHHhhhCCChHHHHhccCCCCchhhH
Q 008585          424 LCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ-N-CREVKRDDKSVPNLVQLLDPSPQNTAK  501 (560)
Q Consensus       424 L~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~-~-~~~~~~~~~~v~~Lv~lL~~~~~~~~~  501 (560)
                      |..++..-.  +.+. ..+++.+...+.+.+..+|..|+.+|..++.+.. . ....+  ...++.++..|.+.. ..++
T Consensus       352 L~~l~~~~~--~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~-~~Vr  425 (462)
T 1ibr_B          352 LMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS-VVVR  425 (462)
T ss_dssp             HHHHHHHTT--TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC-HHHH
T ss_pred             HHHHHHhcc--HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC-HHHH
Confidence            999884311  1111 2457788888888999999999999999996432 1 22222  356788999998764 4689


Q ss_pred             HHHHHHHHHhCC
Q 008585          502 KYAVACLASLSP  513 (560)
Q Consensus       502 ~~a~~~L~~L~~  513 (560)
                      ..++.++..++.
T Consensus       426 ~~a~~~l~~~~~  437 (462)
T 1ibr_B          426 DTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.09  E-value=1.7e-07  Score=101.88  Aligned_cols=356  Identities=13%  Similarity=0.111  Sum_probs=239.5

Q ss_pred             hchHHHHHHHHcc---CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 008585          153 HGNTRELLARLQI---GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC  229 (560)
Q Consensus       153 ~~~i~~Ll~~L~~---~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~  229 (560)
                      ...+.++-..++.   .+...+.+++..+.-+..-+.+      -..+....++++.+++...+..+--++..++...+.
T Consensus        34 ~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e  107 (621)
T 2vgl_A           34 NKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSE  107 (621)
T ss_dssp             HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcH
Confidence            4445555566653   3677888888877776543321      124577788899999999999999999988876542


Q ss_pred             HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh--ccCChHHHHHHHHHHHHhcC
Q 008585          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC--QTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa~  307 (560)
                      .-.+    ++..+.+=|++.++.++..|..+|+++.. ++....+     ++.+.+.+  .+.+|.+|..|+.++.++..
T Consensus       108 ~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~~  177 (621)
T 2vgl_A          108 LIRL----INNAIKNDLASRNPTFMGLALHCIANVGS-REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLYR  177 (621)
T ss_dssp             HHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            1111    36677778889999999999999999954 5544444     48888999  88999999999999999875


Q ss_pred             -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH----Hhcc----------
Q 008585          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL----AYLD----------  372 (560)
Q Consensus       308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~----~ll~----------  372 (560)
                       +++...   ..+.++.+.++|.+.+. .++.+|+.++..++..++....     ..++.++    +++.          
T Consensus       178 ~~p~~~~---~~~~~~~l~~lL~d~d~-~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~  248 (621)
T 2vgl_A          178 TSPDLVP---MGDWTSRVVHLLNDQHL-GVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDYT  248 (621)
T ss_dssp             HCGGGCC---CCSCHHHHHHHTTCSCH-HHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTTE
T ss_pred             hChhhcC---chhHHHHHHHHhCCCCc-cHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccchh
Confidence             333221   24789999999988776 8999999999999986654211     1233333    3321          


Q ss_pred             -----CCccHHHHHHHHHHhhccccH---HHHHhCCcHHHHHHHH---------hcCC--HHHHHHHHHHHHHHhCChhH
Q 008585          373 -----GPLPQESAVGALRNLVGSVSQ---EVLISLGFFPRLVHVL---------KAGS--LGAQQAAASALCRVCTSAEM  433 (560)
Q Consensus       373 -----~~~~~~~a~~~L~nla~~~~~---~~l~~~~~i~~Lv~lL---------~~~~--~~v~~~A~~aL~~La~~~~~  433 (560)
                           +|..|...+..|..++..+..   +.+.  .++..++..+         ++.+  ..|..+|+.++..+...++.
T Consensus       249 ~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~  326 (621)
T 2vgl_A          249 YYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL  326 (621)
T ss_dssp             ETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHH
Confidence                 234677788888887763222   1111  1334444332         2223  38888999999999765555


Q ss_pred             HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccC-CCCchhhHHHHHHHHHHhC
Q 008585          434 KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLD-PSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       434 ~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~~a~~~L~~L~  512 (560)
                      .+.     ++..|..++.+.++++|..|+.+|..++...+. ..++.  .....++..|. +. +..++..++.++..++
T Consensus       327 ~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          327 LVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTER-DVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             HHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHC
T ss_pred             HHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCC-CHhHHHHHHHHHHHHc
Confidence            443     377888999889999999999999999865443 22343  45677888887 54 4568999999999998


Q ss_pred             CChhhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585          513 PSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE  549 (560)
Q Consensus       513 ~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~  549 (560)
                      .. ++-..++. ....+   +.+.+++-..+++.++.
T Consensus       398 ~~-~Nv~~Iv~-eL~~y---l~~~d~~~~~~~v~~I~  429 (621)
T 2vgl_A          398 DR-SNAQQIVA-EMLSY---LETADYSIREEIVLKVA  429 (621)
T ss_dssp             CH-HHHHHHHH-HHHHH---HHHCCHHHHHHHHHHHH
T ss_pred             Ch-hhHHHHHH-HHHHH---HHhcCHHHHHHHHHHHH
Confidence            54 34444433 12222   22344444555555554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.06  E-value=7.1e-09  Score=117.76  Aligned_cols=369  Identities=14%  Similarity=0.082  Sum_probs=222.6

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc------
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS------  228 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~------  228 (560)
                      .++.+...++..+.+.+..++..|..++...++..........++.++..+.+.++.++..++..+..++....      
T Consensus       218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~  297 (876)
T 1qgr_A          218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA  297 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            34455556677788899999999999998766543333444678888888888889999999999988875420      


Q ss_pred             -------------hHHHH--HhCCCHHHHHHhhhc-------CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHH
Q 008585          229 -------------CENWL--VSEGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI  286 (560)
Q Consensus       229 -------------~~~~l--~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l  286 (560)
                                   ....+  .-...++.+++.|..       +++.+|..+..+|..++.....  .+. ...++.+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~  374 (876)
T 1qgr_A          298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEH  374 (876)
T ss_dssp             HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHH
T ss_pred             ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHH
Confidence                         00000  012356777777752       3567888999999998653221  111 1234666677


Q ss_pred             hccCChHHHHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH---HHHHHhC
Q 008585          287 CQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL---RRSVVSE  361 (560)
Q Consensus       287 l~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~---~~~i~~~  361 (560)
                      +.+.++.+|..++.+|.+++...  +...... ..+++.++..+.+++. .+|..|+++|++++...+..   ...+  .
T Consensus       375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~l--~  450 (876)
T 1qgr_A          375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSV-VVRDTAAWTVGRICELLPEAAINDVYL--A  450 (876)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHCGGGTSSTTTH--H
T ss_pred             ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHhCchhcccHHHH--H
Confidence            78889999999999999998642  2222222 4588999999988886 89999999999998743220   0000  1


Q ss_pred             CCHHHHHHhccC-CccHHHHHHHHHHhhcccc-------------HHHH--HhCCcHHHHHHHHhcC---CHHHHHHHHH
Q 008585          362 GGIRSLLAYLDG-PLPQESAVGALRNLVGSVS-------------QEVL--ISLGFFPRLVHVLKAG---SLGAQQAAAS  422 (560)
Q Consensus       362 g~l~~L~~ll~~-~~~~~~a~~~L~nla~~~~-------------~~~l--~~~~~i~~Lv~lL~~~---~~~v~~~A~~  422 (560)
                      ..++.++..+.+ +.++..++++|.+++....             ...+  .-..+++.|+..+...   +..++..+..
T Consensus       451 ~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~  530 (876)
T 1qgr_A          451 PLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE  530 (876)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHH
Confidence            235666666655 5678888888888875100             0000  0012344444444332   1234444444


Q ss_pred             --------------------------------------------------------HHHHHhCC---hhHHHHHHhcCCH
Q 008585          423 --------------------------------------------------------ALCRVCTS---AEMKKLVGEAGCT  443 (560)
Q Consensus       423 --------------------------------------------------------aL~~La~~---~~~~~~i~~~g~i  443 (560)
                                                                              ++..++..   .+....+  ...+
T Consensus       531 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~  608 (876)
T 1qgr_A          531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVM  608 (876)
T ss_dssp             HHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHH
T ss_pred             HHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHH
Confidence                                                                    44444322   1111111  1246


Q ss_pred             HHHHHHHccCC--HHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh--hhH
Q 008585          444 PLLIKLLEAKP--NSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK--KCK  518 (560)
Q Consensus       444 ~~Lv~ll~s~~--~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~--~~r  518 (560)
                      +.+++++.+.+  ..+++.++.++..++.. ......++.  ..++.+...|.+.....++..++.++..++..-  ..+
T Consensus       609 ~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~  686 (876)
T 1qgr_A          609 ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII  686 (876)
T ss_dssp             HHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67777776654  36899999999999843 222333332  345777777776534457888888888776422  121


Q ss_pred             HHHHHcChhHHHHHhhcc
Q 008585          519 KLMISYGAIGYLKKLSEM  536 (560)
Q Consensus       519 ~~i~~~g~i~~L~~L~~~  536 (560)
                      ..  -...++.|.+....
T Consensus       687 ~~--~~~i~~~l~~~l~~  702 (876)
T 1qgr_A          687 PF--CDEVMQLLLENLGN  702 (876)
T ss_dssp             HH--HHHHHHHHHHHHTC
T ss_pred             hh--HHHHHHHHHHHhCC
Confidence            11  13455555555443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.99  E-value=2.6e-09  Score=117.82  Aligned_cols=192  Identities=14%  Similarity=0.176  Sum_probs=153.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhCC--hhhHHH
Q 008585          197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMS--AEMARA  273 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~  273 (560)
                      .+.++++.|++++++.|..|+.+|.+|+.+++.+..+...|++.+++ .+|.+.+..++..|+++|++|+.+  ++.+..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            45667788999999999999999999999888999999999988765 578889999999999999999864  678889


Q ss_pred             HHhCCChHHHHHHhccCC---------------------hHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcC
Q 008585          274 IVGHGGVRPLIEICQTGD---------------------SVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCG  331 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~  331 (560)
                      ++..|++++|..+++...                     +.+...++.+|++||. +++....+.+.+.++.++.++.+.
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            999999999999986311                     1233467889999986 557777888899999999988543


Q ss_pred             C--chhHHHHHHHHHHHHccCChhHHHHHHhCCCHH---HHHHhccC-CccHHHHHHHHHHhh
Q 008585          332 I--LLGSKEYAAECLQNLTASNENLRRSVVSEGGIR---SLLAYLDG-PLPQESAVGALRNLV  388 (560)
Q Consensus       332 ~--~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~---~L~~ll~~-~~~~~~a~~~L~nla  388 (560)
                      +  +.+++..++.+|.+++.+++...+.+.+.+...   .+..+..+ ...+..+++.|.|+.
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            2  347999999999999999998888888766432   23333333 445777888888874

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.97  E-value=7.9e-09  Score=122.00  Aligned_cols=343  Identities=15%  Similarity=0.128  Sum_probs=228.8

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      ..+..++..+.+.+.+.|..|...|.+....+......-.....++.|++.|.+.++.+|..|+.+|+.++..-.. ..+
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~   84 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV   84 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence            4578899999999999999999999887654311000000113577888899988999999999999999865432 111


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhh----HHHHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhc
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEM----ARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNIS  306 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~----~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa  306 (560)
                        ..+++.++..+.+++..+|..++.+|..++..  ++.    ...-.....++.|+..+. ++++.++..++.+|.+++
T Consensus        85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence              23577888888888889999999999998643  220    001112245688999998 488999999999999987


Q ss_pred             C--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHH
Q 008585          307 A--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAV  381 (560)
Q Consensus       307 ~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~  381 (560)
                      .  .+.....+  ...++.++..+.+++. .+|..++.+|..++...+.   .+ -...++.++..+.+   +..+..++
T Consensus       163 ~~~~~~l~~~~--~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          163 SRQGGLLVNFH--PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHTCSSCTTTH--HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHhHhHHHHHH--HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHH
Confidence            3  11111111  3467778888888776 8999999999999975432   11 22347777777743   35677788


Q ss_pred             HHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-----
Q 008585          382 GALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-----  452 (560)
Q Consensus       382 ~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-----  452 (560)
                      .+++.++..... .+  .-..+++.++..+.+.++.++..+..++..++..  .+....+  ...++.+++.+..     
T Consensus       236 ~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCC
Confidence            888888862111 11  1246789999999888899999999999998753  2333322  1234444433321     


Q ss_pred             --------------------------------CCHHHHHHHHHHHHHhcCCCh-hhHHHhhhCCChHHHHhccCCCCchh
Q 008585          453 --------------------------------KPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNT  499 (560)
Q Consensus       453 --------------------------------~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~  499 (560)
                                                      ....+|..|+.+|..++...+ ....++  ...++.++..+.+.+ +.
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~-~~  389 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKERE-EN  389 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSS-SH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCc-hH
Confidence                                            123478999999999986433 234444  366788888886553 45


Q ss_pred             hHHHHHHHHHHhC
Q 008585          500 AKKYAVACLASLS  512 (560)
Q Consensus       500 ~~~~a~~~L~~L~  512 (560)
                      ++..++.++..+.
T Consensus       390 Vr~~a~~~l~~l~  402 (1230)
T 1u6g_C          390 VKADVFHAYLSLL  402 (1230)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777665544

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.96  E-value=7.9e-09  Score=108.15  Aligned_cols=272  Identities=13%  Similarity=0.107  Sum_probs=183.8

Q ss_pred             chHHHHHHHHccC--CHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585          154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~  228 (560)
                      ..++.++..++++  ++..+..++..|..++.+. ++...... ...++.++.+++++  ++.+|..|++++..+...-+
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4578888899888  8999999999999998754 22111111 13678888899887  79999999999998764321


Q ss_pred             --hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585          229 --CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (560)
Q Consensus       229 --~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (560)
                        ........-+++.+...+.+.+..++..++++|..++... +.-......+.++.++..+++.++.++..++..+.++
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~  286 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence              0001111114566667778889999999999999997532 2111111115567777888888999999999988888


Q ss_pred             cCCchh------------------HHHHHh---cCcHHHHHHHhhcC------CchhHHHHHHHHHHHHccCChhHHHHH
Q 008585          306 SAVPEV------------------RQMLAE---EGIVSVMIKLLDCG------ILLGSKEYAAECLQNLTASNENLRRSV  358 (560)
Q Consensus       306 a~~~~~------------------~~~i~e---~g~v~~L~~lL~~~------~~~~v~~~a~~~L~~La~~~~~~~~~i  358 (560)
                      +.....                  ...+.+   ...+|.+++.+.+.      ++..++..|..+|..++...+.   .+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~  363 (462)
T 1ibr_B          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI  363 (462)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---TH
T ss_pred             HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HH
Confidence            753210                  000111   33567777777432      1126899999999999874331   11


Q ss_pred             HhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585          359 VSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       359 ~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~  430 (560)
                      . ...++.+...+.+  ..++..++.+|+.++.....+.+  .-..+++.++..|++.++.|+..|+++|++++..
T Consensus       364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            1 1235666667766  45789999999999972111111  1256799999999999999999999999999853

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.92  E-value=9e-08  Score=104.15  Aligned_cols=324  Identities=14%  Similarity=0.151  Sum_probs=219.4

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (560)
                      +.....+..+++.+.+.|.-+.-.+..++..+++....     .+..+.+=|+++++.++-.|+++|+++... +    +
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-e----~  143 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSR-E----M  143 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-H----H
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-H----H
Confidence            34667778888999999988888888888777654322     356777778899999999999999999652 2    2


Q ss_pred             HhCCCHHHHHHhh--hcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585          234 VSEGVLPPLIRLV--ESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP  309 (560)
Q Consensus       234 ~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~  309 (560)
                      . ...++.+.+.|  .+.++.+|..|+.++.++.. +++...   ..+.++.+.+++.+.++.++..|+.++..++. ++
T Consensus       144 ~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~  219 (621)
T 2vgl_A          144 A-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP  219 (621)
T ss_dssp             H-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred             H-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence            2 23678899999  88899999999999999965 233221   24788999999999999999999999999975 32


Q ss_pred             hhHHHHHhcCcHHHHH----HHhhcC-C-----------chhHHHHHHHHHHHHccC-ChhHHHHHHhCCCHHHHHHhcc
Q 008585          310 EVRQMLAEEGIVSVMI----KLLDCG-I-----------LLGSKEYAAECLQNLTAS-NENLRRSVVSEGGIRSLLAYLD  372 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~----~lL~~~-~-----------~~~v~~~a~~~L~~La~~-~~~~~~~i~~~g~l~~L~~ll~  372 (560)
                      +.   +  ...++.++    +++..+ .           +...|...+.+|..++.. ++..++.+.+  .+..++..+.
T Consensus       220 ~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~  292 (621)
T 2vgl_A          220 EE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ  292 (621)
T ss_dssp             HH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred             HH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence            21   1  12344444    444322 1           236888888888888763 3454444432  2333333221


Q ss_pred             C-C------------ccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHh
Q 008585          373 G-P------------LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE  439 (560)
Q Consensus       373 ~-~------------~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~  439 (560)
                      + +            .+...|+.++..+..  ..+.+  ..++..|..+|.+.++.+|..++.+|..++........+  
T Consensus       293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~~~--~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--  366 (621)
T 2vgl_A          293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDS--EPNLL--VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--  366 (621)
T ss_dssp             SCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHHHH--HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--
T ss_pred             cCcccccccccchHHHHHHHHHHHHHhcCC--cHHHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--
Confidence            1 2            445566666666643  22111  235778888888889999999999999998653212233  


Q ss_pred             cCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          440 AGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       440 ~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      ....+.++..+. +.+..++..++..|..++ ++.|...++      ..|...+...+ ...+..++..+..++
T Consensus       367 ~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv------~eL~~yl~~~d-~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          367 KTHIETVINALKTERDVSVRQRAVDLLYAMC-DRSNAQQIV------AEMLSYLETAD-YSIREEIVLKVAILA  432 (621)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC-CHHHHHHHH------HHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc-ChhhHHHHH------HHHHHHHHhcC-HHHHHHHHHHHHHHH
Confidence            345777888887 888899999999999996 445555544      44555554443 235555565555554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.91  E-value=6.2e-09  Score=114.78  Aligned_cols=191  Identities=14%  Similarity=0.099  Sum_probs=149.9

Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH-HHhccCChHHHHHHHHHHHHhcC--CchhHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA--VPEVRQM  314 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~  314 (560)
                      .+.++++.|++.++..|..|+++|.+|+.++..+..+...|++..++ .++.+.+.+++..|+++|+||+.  ..+++..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            46677888999999999999999999999999999999999998865 46888999999999999999984  5689999


Q ss_pred             HHhcCcHHHHHHHhhcCCc--------------------hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-
Q 008585          315 LAEEGIVSVMIKLLDCGIL--------------------LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-  373 (560)
Q Consensus       315 i~e~g~v~~L~~lL~~~~~--------------------~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-  373 (560)
                      +...|+++.|..++++...                    ..+..+++.+|++|+..++.....+...++++.++..+.+ 
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            9999999999999863110                    0244578899999998888877888889999999998843 


Q ss_pred             ----CccHHHHHHHHHHhhc--cccHHHHHhCCcHH--HHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          374 ----PLPQESAVGALRNLVG--SVSQEVLISLGFFP--RLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       374 ----~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~--~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                          .+++..++.+|.+++.  ....+.+.+.+...  .++..+...+...+..++..|.|+.
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence                3578899999999998  24445566655422  2222233344455778888888873

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.83  E-value=7.6e-07  Score=90.78  Aligned_cols=313  Identities=15%  Similarity=0.129  Sum_probs=206.0

Q ss_pred             chHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhCh---HHHHHHhhCCC-HHHHHH-hhcCCCHHHHHHHHHHHHHHhcCC
Q 008585          154 GNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSN-IAALVQ-LLTATSPRIREKTVTVICSLAESG  227 (560)
Q Consensus       154 ~~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~---~~~~~i~~~g~-v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~  227 (560)
                      ..+..++..|+ +.+.+.....+.-+.+++.+++   .....+.+... ...+.. .+..+++-....+..++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            34677888886 5667788888888889988776   44444444333 222333 344444666677777767765332


Q ss_pred             ch----HHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCC--hHHHHHHhcc-----------
Q 008585          228 SC----ENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGG--VRPLIEICQT-----------  289 (560)
Q Consensus       228 ~~----~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~--i~~Lv~ll~~-----------  289 (560)
                      ..    ...+...   +-++..|.. ++...+..++.+|..|...++.+..+.+.++  ++.++.+++.           
T Consensus       157 ~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          157 LHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            11    1111111   034455555 2455677899999999999999999987543  6666655431           


Q ss_pred             ----C--ChHHHHHHHHHHHHhcCCchhHHHHHhcCcH--HHHHHHhhcCCchhHHHHHHHHHHHHccCCh-----hHHH
Q 008585          290 ----G--DSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLGSKEYAAECLQNLTASNE-----NLRR  356 (560)
Q Consensus       290 ----~--~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v--~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~-----~~~~  356 (560)
                          +  ...++..++.++|-|+.+++..+.+...+..  +.++.+++....+.+.+-++.+|.|+...++     ...+
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence                1  2456799999999999999999999887754  6677778776656899999999999998652     1223


Q ss_pred             HHHhCCCHHHHHHhccC-----CccH-------HHHHHHHHHhhc-cccHH----------------H--------HHhC
Q 008585          357 SVVSEGGIRSLLAYLDG-----PLPQ-------ESAVGALRNLVG-SVSQE----------------V--------LISL  399 (560)
Q Consensus       357 ~i~~~g~l~~L~~ll~~-----~~~~-------~~a~~~L~nla~-~~~~~----------------~--------l~~~  399 (560)
                      .++..++ .++++.|..     +++.       +.--..+..++. .+...                .        +.+.
T Consensus       314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~  392 (480)
T 1ho8_A          314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  392 (480)
T ss_dssp             HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence            3433444 445555533     2211       111111112221 11111                1        1122


Q ss_pred             --CcHHHHHHHHhc----------CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585          400 --GFFPRLVHVLKA----------GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (560)
Q Consensus       400 --~~i~~Lv~lL~~----------~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~  466 (560)
                        ..+..|+++|.+          .++.+...||.=|+.++++ |+.+..+-+.|+-..+++++.+++++||..|+.|+.
T Consensus       393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ  472 (480)
T 1ho8_A          393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ  472 (480)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence              347889999973          3688889999999999965 899998888899999999999999999999999998


Q ss_pred             HhcC
Q 008585          467 SLVT  470 (560)
Q Consensus       467 ~L~~  470 (560)
                      .+..
T Consensus       473 klm~  476 (480)
T 1ho8_A          473 AIIG  476 (480)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.73  E-value=7.4e-08  Score=113.72  Aligned_cols=340  Identities=11%  Similarity=0.092  Sum_probs=222.2

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH--
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE--  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~--  230 (560)
                      ...++.++..|...++++|..|+..|..++...+..  .+  ...++.|+..+.++++.+|..|+.+|+.++..-...  
T Consensus        47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            455777888888889999999999999998754431  11  135778888888888899999999999998643311  


Q ss_pred             ----HHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCC--h---hhHHHHHhCCChHHHHHHhccCChHHHHHHHH
Q 008585          231 ----NWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMS--A---EMARAIVGHGGVRPLIEICQTGDSVSQAAAAC  300 (560)
Q Consensus       231 ----~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~--~---~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~  300 (560)
                          ..-.-..++|.|++.+. ++++.++..++.++..++..  .   +...     ..++.++..+.++++.+|..|+.
T Consensus       123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~-----~ll~~l~~~L~~~~~~vR~~a~~  197 (1230)
T 1u6g_C          123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP-----SILTCLLPQLTSPRLAVRKRTII  197 (1230)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH-----HHHHHHGGGGGCSSHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH-----HHHHHHHHHHcCCcHHHHHHHHH
Confidence                11112347899999998 47889999999999998632  1   1112     23467777788888999999999


Q ss_pred             HHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH--hCCCHHHHHHhccC--Ccc
Q 008585          301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV--SEGGIRSLLAYLDG--PLP  376 (560)
Q Consensus       301 aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~--~~g~l~~L~~ll~~--~~~  376 (560)
                      +|..++...+.  .+ -...++.++..+.+.++..++..++.++..++...+.   .+.  -...++.++..+.+  +.+
T Consensus       198 al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~v  271 (1230)
T 1u6g_C          198 ALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDEL  271 (1230)
T ss_dssp             HHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred             HHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999864321  12 2346888888887654325778889999988864322   111  13457777887754  678


Q ss_pred             HHHHHHHHHHhhc--c-ccHHHHHhCCcHHHHHHHHhc-------------------------------------CCHHH
Q 008585          377 QESAVGALRNLVG--S-VSQEVLISLGFFPRLVHVLKA-------------------------------------GSLGA  416 (560)
Q Consensus       377 ~~~a~~~L~nla~--~-~~~~~l~~~~~i~~Lv~lL~~-------------------------------------~~~~v  416 (560)
                      +..++.++..++.  . .....+  ..+++.++..+..                                     ....+
T Consensus       272 R~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v  349 (1230)
T 1u6g_C          272 REYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV  349 (1230)
T ss_dssp             HHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred             HHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHH
Confidence            9999999998886  2 211110  1223333333221                                     11357


Q ss_pred             HHHHHHHHHHHhCC-hh-HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh----------------hhHHH
Q 008585          417 QQAAASALCRVCTS-AE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ----------------NCREV  478 (560)
Q Consensus       417 ~~~A~~aL~~La~~-~~-~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~----------------~~~~~  478 (560)
                      +..|+.++..++.. ++ ....+  ...++.++..+.+.++.+|..+..++..+...-.                .+...
T Consensus       350 R~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (1230)
T 1u6g_C          350 RRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM  427 (1230)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHH
T ss_pred             HHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHH
Confidence            88999999998864 32 33333  4568888888888889999999999888763100                11111


Q ss_pred             hh--hCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          479 KR--DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       479 ~~--~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      +.  -...++.+.+.+.+.++ .++..++.++..++
T Consensus       428 ~~~~l~~ll~~l~~~l~~~~~-~vr~~~~~~L~~l~  462 (1230)
T 1u6g_C          428 LQSQVPNIVKALHKQMKEKSV-KTRQCCFNMLTELV  462 (1230)
T ss_dssp             HHHHTTHHHHHHHHHTTCSCH-HHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHhccCCH-HHHHHHHHHHHHHH
Confidence            11  01234555566776543 45666776666554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.61  E-value=1.3e-05  Score=89.79  Aligned_cols=369  Identities=14%  Similarity=0.156  Sum_probs=244.0

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc----hH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE  230 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~  230 (560)
                      .+.+++..+...+...+..++..+..+...+...  ..+..+.+..|.+.++.....  +.|+.++..|+....    ..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e   90 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE   90 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence            3555777777766666778888898887643211  111125567777777665333  999999999996542    33


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhccC-ChHHHHHHHHHHHHhcC
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA  307 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~  307 (560)
                      ..++  +.++.++....+....++..|..++..+..  ++.....+     +|.|+..+.+. .+..+..|+.++..|+.
T Consensus        91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKAL-----LPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            3444  578999999999889999998888888843  45444333     48999988764 69999999999999985


Q ss_pred             CchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc--CChhHHHHHHhCCCHHHHHHhccCCccHHHHHHH
Q 008585          308 VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGA  383 (560)
Q Consensus       308 ~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~  383 (560)
                      ..  ...+..  ..+||.+-..+.+..+ +++..|..++..+|.  +|.+.      ...++.|++.+.+|+-...++..
T Consensus       164 ~~--~~~~~~~~~~~~p~~~~~~~d~k~-~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~~~~~~~~  234 (986)
T 2iw3_A          164 AA--KDQVALRMPELIPVLSETMWDTKK-EVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTEVPETVHL  234 (986)
T ss_dssp             HS--HHHHHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTHHHHHHHH
T ss_pred             Hh--HHHHHHhccchhcchHhhcccCcH-HHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhhhHHHHHH
Confidence            32  222222  4578888888888876 899999999999987  33332      23488999999888766666666


Q ss_pred             HHHhhc-ccc-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC---hhHHHHHHhcCCHHHHHHHHc-cCCHHH
Q 008585          384 LRNLVG-SVS-QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKLLE-AKPNSV  457 (560)
Q Consensus       384 L~nla~-~~~-~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~---~~~~~~i~~~g~i~~Lv~ll~-s~~~~v  457 (560)
                      |+.-.+ .+. ...+  .=.+|.|.+-|+.....+++.++-++.|||.-   +.....+. -..+|.+-+... ..+|++
T Consensus       235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          235 LGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             HTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHH
T ss_pred             hhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHH
Confidence            666665 221 1111  11467777888888999999999999999965   33333321 356777776665 468999


Q ss_pred             HHHHHHHHHHhc---CC--ChhhHHHhhhCC----ChHHHHhccCCC----CchhhHHHHHHHHHHhCCChhhHHHHHHc
Q 008585          458 REVAAQAISSLV---TL--PQNCREVKRDDK----SVPNLVQLLDPS----PQNTAKKYAVACLASLSPSKKCKKLMISY  524 (560)
Q Consensus       458 ~~~A~~aL~~L~---~~--~~~~~~~~~~~~----~v~~Lv~lL~~~----~~~~~~~~a~~~L~~L~~~~~~r~~i~~~  524 (560)
                      |+.|..++..|-   ..  ........ ..+    ....+...+...    ..+.+..|+..+...+.........-+..
T Consensus       312 r~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~  390 (986)
T 2iw3_A          312 REVTLRALKTLRRVGNVGEDDAIPELS-HAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFT  390 (986)
T ss_dssp             HHHHHHHHHHHHHHHTCBTTTBCCCCC-CTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccccccccccc-ccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccccchhHHHH
Confidence            999988888884   11  11100000 001    112344445443    12346778888888887766555555666


Q ss_pred             ChhHHHHHhhccCchhHHHHHHHHh
Q 008585          525 GAIGYLKKLSEMDIPGARKLLERLE  549 (560)
Q Consensus       525 g~i~~L~~L~~~~~~~akkl~~~l~  549 (560)
                      ...+||..+..  ..+++.+++.+.
T Consensus       391 ~~~~~~~~~~~--~~~~~~~~~~~~  413 (986)
T 2iw3_A          391 HITPYMTIFLH--EKKAKDILDEFR  413 (986)
T ss_dssp             HTHHHHTTTSC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc--hhhHHHHHHHHH
Confidence            67788776643  445666655543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.52  E-value=4e-07  Score=86.74  Aligned_cols=180  Identities=13%  Similarity=0.182  Sum_probs=136.9

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCc--hHHHHH
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGS--CENWLV  234 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~--~~~~l~  234 (560)
                      .+...+++.+...|..|+..|..++...++...... ...++.|...+ ++.+..++..|+.+++.|+..-.  ....+ 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence            366778889999999999999999986432100000 13467788888 48899999999999999996422  21222 


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc-CC-ch--
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AV-PE--  310 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~-~~--  310 (560)
                       ..+++.++..+++.+..+|..+..+|..+....... .     .++.+...+++.++.+|..++..|..+. .. ++  
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~-~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE-A-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH-H-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH-H-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence             237899999999999999999999999997754322 2     3477888899999999999999999964 33 32  


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ....+  ...++.+..++.+... ++|..|..+++.++.
T Consensus       170 ~~~~l--~~l~p~l~~~l~D~~~-~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL--KLLTTSLVKTLNEPDP-TVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH--HHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHH
T ss_pred             cHHHH--HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHH
Confidence            22333  3589999999998886 899999999999885

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.50  E-value=3.1e-06  Score=77.24  Aligned_cols=182  Identities=14%  Similarity=0.119  Sum_probs=144.8

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL  233 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l  233 (560)
                      .+..++..|+..|+.++..++..|-++.+.-++......-...++.++.++++.+..+--.|+++|..|-.+.+ ....+
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            46677888899999999999999999999855443333334689999999999999999999999999988765 44444


Q ss_pred             HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC---ch
Q 008585          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV---PE  310 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~---~~  310 (560)
                      ..  +...+..+++++++..+++++..+..+.-....+..      +..+..++.+.++.++..+..+|.|++..   ++
T Consensus       114 ~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V------~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~  185 (265)
T 3b2a_A          114 LK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV------RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG  185 (265)
T ss_dssp             HH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHH------HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred             HH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHH------HHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence            44  478889999999999999999999999332333332      36788888999999999999999999852   23


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS  350 (560)
Q Consensus       311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~  350 (560)
                      +-+     +++.-+-.++++.++ .+++.|+.+|-.+...
T Consensus       186 i~~-----~I~~eI~elL~~eD~-~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          186 HLT-----LILDEIPSLLQNDNE-FIVELALDVLEKALSF  219 (265)
T ss_dssp             CGG-----GTTTTHHHHHTCSCH-HHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence            333     344556677888876 8999999999999874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.47  E-value=5.3e-05  Score=83.98  Aligned_cols=289  Identities=16%  Similarity=0.043  Sum_probs=192.4

Q ss_pred             CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH
Q 008585          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT---ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI  243 (560)
Q Consensus       167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv  243 (560)
                      ....+..|+.+|.-+-..+.        .+++..|-+.|.   ++++.++..|+.+|+.+......       .++..|.
T Consensus       371 ~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~  435 (963)
T 4ady_A          371 QNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLK  435 (963)
T ss_dssp             CTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHH
T ss_pred             chHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHH
Confidence            33345555555555544332        135666777776   56789999999999998665431       1467777


Q ss_pred             HhhhcCC--------HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585          244 RLVESGS--------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (560)
Q Consensus       244 ~lL~~~~--------~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (560)
                      ..|.+.+        +.++..|+..|.-......+..      +++.|..++.+.+..++..|+.+|+.+-....+.   
T Consensus       436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee------v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~---  506 (963)
T 4ady_A          436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE------VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP---  506 (963)
T ss_dssp             HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH------HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH---
T ss_pred             HHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH---
Confidence            7777655        6688888888888743222222      2367778888777777778888888763221111   


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc---CCccHHHHHHHHHHhhc-cc
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD---GPLPQESAVGALRNLVG-SV  391 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~---~~~~~~~a~~~L~nla~-~~  391 (560)
                         .++..|++.+.+.....+++.++..|+.+..+++..         ++.+++.|.   ++.++..++.+++.-.. ..
T Consensus       507 ---~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTG  574 (963)
T 4ady_A          507 ---EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTG  574 (963)
T ss_dssp             ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred             ---HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence               234556665544433489999999999998776654         556666653   36677777777775554 33


Q ss_pred             cHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhc
Q 008585          392 SQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKL-LEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       392 ~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~l-l~s~~~~v~~~A~~aL~~L~  469 (560)
                      +..      .|+.|++.+.+ .+..+++.|+.+|+.+.....        ..++.++.+ .++.++.+|..|+.+|..++
T Consensus       575 n~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~  640 (963)
T 4ady_A          575 NNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC  640 (963)
T ss_dssp             CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            322      47777776654 578899999999999875421        346666664 45788999999999999998


Q ss_pred             CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585          470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (560)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~  513 (560)
                      .+.++.+.       +..|..++++. ++.++..|+.+|..+..
T Consensus       641 aGn~~~~a-------id~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          641 AGKGLQSA-------IDVLDPLTKDP-VDFVRQAAMIALSMILI  676 (963)
T ss_dssp             SSSCCHHH-------HHHHHHHHTCS-SHHHHHHHHHHHHHHST
T ss_pred             cCCCcHHH-------HHHHHHHccCC-CHHHHHHHHHHHHHHhc
Confidence            66655322       46677777766 34588888888886653

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.45  E-value=1.2e-05  Score=80.20  Aligned_cols=303  Identities=12%  Similarity=0.073  Sum_probs=169.4

Q ss_pred             CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh
Q 008585          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV  246 (560)
Q Consensus       167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL  246 (560)
                      ++.....++..+..+...++....... ......+++++.+++...+...--.+..++..++..  +   =++..+.+=+
T Consensus        40 ~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl  113 (355)
T 3tjz_B           40 NPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDM  113 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhc
Confidence            344445566666666544332110000 023445678999999999999888888888764321  1   2577888888


Q ss_pred             hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHH
Q 008585          247 ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMI  325 (560)
Q Consensus       247 ~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~  325 (560)
                      +++++-+|..|.++|+++.. ++..+.+.     +.+-..+.+.+|.++..|+.+..+|.. .++..    + +.+..+-
T Consensus       114 ~~~N~~iR~lALRtL~~I~~-~~m~~~l~-----~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~  182 (355)
T 3tjz_B          114 TGKEDSYRGPAVRALCQITD-STMLQAIE-----RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQ  182 (355)
T ss_dssp             HSSCHHHHHHHHHHHHHHCC-TTTHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHH
T ss_pred             CCCcHhHHHHHHHHHhcCCC-HHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHH
Confidence            99999999999999999965 33333333     677788889999999999999999975 44432    2 5788888


Q ss_pred             HHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-----CccHHHHHHHHHHhhccccHHHHHhCC
Q 008585          326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNLVGSVSQEVLISLG  400 (560)
Q Consensus       326 ~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-----~~~~~~a~~~L~nla~~~~~~~l~~~~  400 (560)
                      +++.+.++ .++.+|+.+|..+...+...         +..++..+..     +..+..-++.+..++..+..  -....
T Consensus       183 ~ll~d~n~-~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~--~~~~~  250 (355)
T 3tjz_B          183 EAASSDNI-MVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG--SRDSP  250 (355)
T ss_dssp             HHTTCSSH-HHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred             HHhcCCCc-cHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch--hhHHH
Confidence            99988886 89999999999998765321         3333443322     22223333333333322101  12356


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhh
Q 008585          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR  480 (560)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~  480 (560)
                      +++.+...|++.++.|.-+|+.++..+...+..   .. ..++..|..++.+.++++|..|+..|..++...++.-.   
T Consensus       251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~---  323 (355)
T 3tjz_B          251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT---  323 (355)
T ss_dssp             ------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH---
Confidence            778888888999999999999999998653211   11 23467788888899999999999999998755444222   


Q ss_pred             hCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585          481 DDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (560)
Q Consensus       481 ~~~~v~~Lv~lL~~~~~~~~~~~a~~~L  508 (560)
                        ..-..+..++.+++.. +..+|+..|
T Consensus       324 --~~n~~ie~li~d~n~s-I~t~Aittl  348 (355)
T 3tjz_B          324 --ACNLDLENLVTDANRS-IATLAITTL  348 (355)
T ss_dssp             ----------------------------
T ss_pred             --HHHHHHHHHccCCcHh-HHHHHHHHh
Confidence              2336677778776433 343444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.37  E-value=0.00014  Score=80.59  Aligned_cols=262  Identities=17%  Similarity=0.081  Sum_probs=178.8

Q ss_pred             cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--------HHHHHHHHHHHHHHhcCCchHHHHHhC
Q 008585          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--------PRIREKTVTVICSLAESGSCENWLVSE  236 (560)
Q Consensus       165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~v~~~A~~~L~~La~~~~~~~~l~~~  236 (560)
                      ++++..+.-|+..|.-+..+...        ..+..|...|.+++        +.++..|+..|+........ .     
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e-----  471 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I-----  471 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H-----
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H-----
Confidence            45677788888888776554321        14667777776554        66888888888886433221 1     


Q ss_pred             CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQML  315 (560)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (560)
                      .+++.|..+|.+.+...++.|+.+|..+-....+...+      ..|+..+ .+.+..+++.++.+|..+....      
T Consensus       472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai------~~LL~~~~e~~~e~vrR~aalgLGll~~g~------  539 (963)
T 4ady_A          472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI------HDMFTYSQETQHGNITRGLAVGLALINYGR------  539 (963)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH------HHHHHHHhccCcHHHHHHHHHHHHhhhCCC------
Confidence            24778888998888777888888888773322222222      4555554 3467788999999998776422      


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-C--CccHHHHHHHHHHhhcccc
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAVGALRNLVGSVS  392 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-~--~~~~~~a~~~L~nla~~~~  392 (560)
                        ...++.+++.|....+..+|+.++.+++.-..+..+...       ++.|+..+. +  ..+|..|+-+|+.+...+ 
T Consensus       540 --~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a-------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~-  609 (963)
T 4ady_A          540 --QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA-------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-  609 (963)
T ss_dssp             --GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH-------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-
T ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHhccCCcHHHHHHHHHHHHhhccCC-
Confidence              235677777777544447888888887755444333221       666777663 2  468889999999887521 


Q ss_pred             HHHHHhCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          393 QEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                            ...++.++..| ++.++.++..|+.+|+.++.+....      ..+..|..+.++.+..||..|+.+|..+...
T Consensus       610 ------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          610 ------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             ------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence                  13467777644 5689999999999999998553221      2367788888999999999999999999854


Q ss_pred             Chh
Q 008585          472 PQN  474 (560)
Q Consensus       472 ~~~  474 (560)
                      ..+
T Consensus       678 tnn  680 (963)
T 4ady_A          678 QTE  680 (963)
T ss_dssp             CCT
T ss_pred             Ccc
Confidence            433

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.36  E-value=0.00013  Score=63.78  Aligned_cols=211  Identities=18%  Similarity=0.265  Sum_probs=159.0

Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhcC-Cchh
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISA-VPEV  311 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~-~~~~  311 (560)
                      +...+..++.+|.++-+.++.+|...+..++.. ++....+.     ..|+.+++ ++........+.+++.++. .|+.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            345788999999999999999999999999886 55555443     66777764 5666676778888988885 4443


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhhc
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG  389 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla~  389 (560)
                      -.     +.+|.+..=..-+++ .++.+...+|..++..++.....+     +.-+..++.+++  -+-.|+.+|..+..
T Consensus       105 v~-----~vVp~lfanyrigd~-kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDE-KTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HH-----hhHHHHHHHHhcCCc-cceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            32     356777776777876 899999999999999988776544     566778887754  35567777777765


Q ss_pred             cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (560)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L  468 (560)
                      +. .+-  -.-++|+|..+|.+++.-|+..|..+|.+++. ++..|+.+.      .-++-+...+..++....++|..|
T Consensus       174 n~-~~y--v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          174 NS-FKY--VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             TT-HHH--HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             cC-ccc--cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHH
Confidence            21 111  24689999999999999999999999999995 477776652      234456677788999999999888


Q ss_pred             cC
Q 008585          469 VT  470 (560)
Q Consensus       469 ~~  470 (560)
                      +.
T Consensus       245 ~l  246 (253)
T 2db0_A          245 LL  246 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.29  E-value=9.4e-08  Score=81.83  Aligned_cols=122  Identities=17%  Similarity=0.249  Sum_probs=92.3

Q ss_pred             hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHH
Q 008585          194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA  273 (560)
Q Consensus       194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~  273 (560)
                      ....++.++.+|+++++.+|..|+.+|+.+...           .++.|+++|++.++.+|..++++|.++.. +     
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-~-----   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-E-----   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-H-----
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-H-----
Confidence            346788899999999999999999888766421           36899999999999999999999999853 1     


Q ss_pred             HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL  347 (560)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L  347 (560)
                          ..++.|+..++++++.+|..++++|.++..          ..+++.|..++++++. .++..++.+|.+|
T Consensus        73 ----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~-~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG-FARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT-HHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHhC
Confidence                236889999999999999999999998863          3468889999988776 8999999888653

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.18  E-value=3.4e-05  Score=76.87  Aligned_cols=274  Identities=14%  Similarity=0.054  Sum_probs=154.0

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      .....++.+++.+.+.|.-..-.+..++...++.   +   =.+..+.+=++++++.+|-.|+++|+++...+-..    
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~----  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ----  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence            3455667788999888888777887777653321   1   14778888889999999999999999997654221    


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHH
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (560)
                        ...+.+.+.|.+.++.++..|+.+..+|... ++..    + +++..+-+++.+.++.++.+|..+|..+..++..  
T Consensus       139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--  209 (355)
T 3tjz_B          139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--  209 (355)
T ss_dssp             --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred             --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence              2456677888899999999999999999654 4432    2 5789999999999999999999999999875421  


Q ss_pred             HHHhcCcHHHHHHHhhcCC--chhHHHHHHHHHHHHccCC-hhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhh
Q 008585          314 MLAEEGIVSVMIKLLDCGI--LLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV  388 (560)
Q Consensus       314 ~i~e~g~v~~L~~lL~~~~--~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla  388 (560)
                            ++..++.-+..+.  ....+..-++++..++..+ +..     ....++.+...+++  +.+...|+.+|..+.
T Consensus       210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~  278 (355)
T 3tjz_B          210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLP  278 (355)
T ss_dssp             ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred             ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence                  3344455454432  1133333344443444333 221     12345566666665  567888888888875


Q ss_pred             ccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585          389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (560)
Q Consensus       389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~  466 (560)
                      ..  .... ...++..|..+|.+.++.+|-.|+..|..+... |+.-.     .+-..+.+++.+.+-.+...|..+|.
T Consensus       279 ~~--~~~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          279 GC--SAKE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             ------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred             CC--CHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHhh
Confidence            41  1111 134567777888899999999999999998843 33221     23455677777777777766665543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.15  E-value=0.00043  Score=70.70  Aligned_cols=312  Identities=14%  Similarity=0.118  Sum_probs=194.8

Q ss_pred             hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCc---hHHHH-HhCC-CHHHHHH-hhhcCCHHHHHHHHHHHHHhhC
Q 008585          194 GRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGS---CENWL-VSEG-VLPPLIR-LVESGSTVGKEKATISLQRLSM  266 (560)
Q Consensus       194 ~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~---~~~~l-~~~g-~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~  266 (560)
                      +..++..++++|+. ++.++....+..+..+..+++   .+..+ .+.. ....+.. .+..++......+..++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            44568889999985 458999999999999887765   33333 2222 2222332 3444556666777777677643


Q ss_pred             C-hh---hHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcC--cHHHHHHHhhcC--------
Q 008585          267 S-AE---MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEG--IVSVMIKLLDCG--------  331 (560)
Q Consensus       267 ~-~~---~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g--~v~~L~~lL~~~--------  331 (560)
                      . +.   ....+....   -++..+.. ++...+..++.+|..|...++.|..+.+.+  .++.++.++...        
T Consensus       155 ~~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~  231 (480)
T 1ho8_A          155 NGLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR  231 (480)
T ss_dssp             TTTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             cCCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence            2 22   112222111   34455554 345667789999999999999999998643  467776654411        


Q ss_pred             -------C-chhHHHHHHHHHHHHccCChhHHHHHHhCCCH--HHHHHhccC---CccHHHHHHHHHHhhccc--cH---
Q 008585          332 -------I-LLGSKEYAAECLQNLTASNENLRRSVVSEGGI--RSLLAYLDG---PLPQESAVGALRNLVGSV--SQ---  393 (560)
Q Consensus       332 -------~-~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l--~~L~~ll~~---~~~~~~a~~~L~nla~~~--~~---  393 (560)
                             . ...++++++.|++.++...+ ..+.+.+.+..  ..|+.++..   .++...++.+|.|+....  ..   
T Consensus       232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~  310 (480)
T 1ho8_A          232 IVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV  310 (480)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhH
Confidence                   1 23578999999999999644 45566666532  455555543   567788899999999832  11   


Q ss_pred             -H-HHHhCCcHHHHHHHHhc---CCHHHHHHHHHHHHHH-------hCChhHHH----------------HHHhc-----
Q 008585          394 -E-VLISLGFFPRLVHVLKA---GSLGAQQAAASALCRV-------CTSAEMKK----------------LVGEA-----  440 (560)
Q Consensus       394 -~-~l~~~~~i~~Lv~lL~~---~~~~v~~~A~~aL~~L-------a~~~~~~~----------------~i~~~-----  440 (560)
                       . .+...++ .+++..|..   .|+++.+..-.....|       +..+++..                .++.+     
T Consensus       311 ~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf  389 (480)
T 1ho8_A          311 IKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF  389 (480)
T ss_dssp             HHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred             HHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH
Confidence             1 2222333 556666654   4565554332222222       11122222                22222     


Q ss_pred             -----CCHHHHHHHHcc----------CCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHH
Q 008585          441 -----GCTPLLIKLLEA----------KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV  505 (560)
Q Consensus       441 -----g~i~~Lv~ll~s----------~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~  505 (560)
                           ..++.|++++.+          .++.+...||.=++.++.+.++-+.++.+-++=..+++++.+.+ +.++..|+
T Consensus       390 ~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~AL  468 (480)
T 1ho8_A          390 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEAL  468 (480)
T ss_dssp             SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHHH
T ss_pred             HhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHHH
Confidence                 257889999973          35667888899999999776676778877777788889998764 46888888


Q ss_pred             HHHHHh
Q 008585          506 ACLASL  511 (560)
Q Consensus       506 ~~L~~L  511 (560)
                      .++..+
T Consensus       469 ~avQkl  474 (480)
T 1ho8_A          469 KATQAI  474 (480)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877644

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.14  E-value=8.2e-06  Score=77.90  Aligned_cols=183  Identities=8%  Similarity=0.100  Sum_probs=132.9

Q ss_pred             HHHHHccCCHHHHHHHHHHHHH-HHhhChHHHHHHhh-CCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCC---chH-H
Q 008585          159 LLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMG-RSNIAALVQLL-TATSPRIREKTVTVICSLAESG---SCE-N  231 (560)
Q Consensus       159 Ll~~L~~~~~~~~~~A~~~L~~-L~~~~~~~~~~i~~-~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~---~~~-~  231 (560)
                      +...+++.+...|.+|+..|.. ++.+.++......+ ...+..|.+.+ +..+..++..|+.+|+.|+..-   ... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            3456789999999999999999 88654421100001 12366777888 6888999999999999998532   222 2


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh------hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (560)
                      ...  -+++.++..+++....++..+..++..++..-      .+-..     .++.|+..+++.+|.+|..++..|..+
T Consensus       101 y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~-----ll~~l~~~l~~k~~~vk~~al~~l~~~  173 (249)
T 2qk1_A          101 YVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNED-----MLKDILEHMKHKTPQIRMECTQLFNAS  173 (249)
T ss_dssp             HHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            222  26899999999999999999999988886532      10112     347888889999999999999999988


Q ss_pred             cCC-ch---hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          306 SAV-PE---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       306 a~~-~~---~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ... +.   .-........+|.+.+++.+.+. .+|..|..++..++.
T Consensus       174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~-~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP-AIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHH
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHH
Confidence            742 21   11112224689999999998886 899999999999875

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.13  E-value=0.00034  Score=61.25  Aligned_cols=212  Identities=17%  Similarity=0.176  Sum_probs=148.3

Q ss_pred             hCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585          276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (560)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~  354 (560)
                      +...+..++.+|.+.-+.++.+|...+.+++. .++....+     +..|+.+++..+..........+++.++.-+++.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            44567889999999889999999999999985 55555444     4556677766655466677888999999877765


Q ss_pred             HHHHHhCCCHHHHHHhc--cCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh
Q 008585          355 RRSVVSEGGIRSLLAYL--DGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE  432 (560)
Q Consensus       355 ~~~i~~~g~l~~L~~ll--~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~  432 (560)
                      -+.+     ++.++.-.  .++..+.+..++|..++.. +++.  -.+++.-+..++.+.+..=+-.|...+..++.+  
T Consensus       105 v~~v-----Vp~lfanyrigd~kikIn~~yaLeeIara-nP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--  174 (253)
T 2db0_A          105 VKSM-----IPVLFANYRIGDEKTKINVSYALEEIAKA-NPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--  174 (253)
T ss_dssp             HHHH-----HHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--
T ss_pred             HHhh-----HHHHHHHHhcCCccceecHHHHHHHHHHh-ChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--
Confidence            3322     44444433  3477889999999999872 1111  134577788889988877777777777777643  


Q ss_pred             HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHh
Q 008585          433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL  511 (560)
Q Consensus       433 ~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L  511 (560)
                      .-+++  ..++|.|..+++.++.-+|..|.++|.+++...+..+..+      ..-++-+++.. +.+++....+|..+
T Consensus       175 ~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S-~lv~~~V~egL~rl  244 (253)
T 2db0_A          175 SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTS-SLVNKTVKEGISRL  244 (253)
T ss_dssp             THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSC-HHHHHHHHHHHHHH
T ss_pred             Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcH-HHHHHHHHHHHHHH
Confidence            22333  4679999999999999999999999999998777766655      33344455442 23444454555443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.13  E-value=5.2e-06  Score=78.91  Aligned_cols=141  Identities=13%  Similarity=0.081  Sum_probs=105.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcC-Cch-HHHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHh
Q 008585          200 ALVQLLTATSPRIREKTVTVICSLAES-GSC-ENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVG  276 (560)
Q Consensus       200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~-~~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~  276 (560)
                      .+.+.+.+.++..|..|+..|..+... +.. ...+  ..+++.|...+. +.+..++..++.++..|+..-...-.-.-
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            477788888999999999999999775 321 1111  135777888884 88999999999999999853211101111


Q ss_pred             CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ...++.++..+.+.++.+|..+..+|.++......      ..+++.+...+.+.++ .++..++..|..+..
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~-~vr~~~l~~l~~~l~  162 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNP-SVKSETALFIARALT  162 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHH
Confidence            23569999999999999999999999999864332      1357788888888876 899999999999654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.09  E-value=4e-05  Score=69.96  Aligned_cols=182  Identities=14%  Similarity=0.131  Sum_probs=135.7

Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH
Q 008585          278 GGVRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR  355 (560)
Q Consensus       278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~  355 (560)
                      +.+..|..++.+.|+.++..++.+|.++-..  ...+.... ...++.++.++.+.++ .+.-.|+.||..|-.+.+--.
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dE-kval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENE-KVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTH-HHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccch-hHHHHHHHHHHHHHcCCCCCH
Confidence            3457889999999999999999999999753  33343444 4589999999988886 899999999999988554222


Q ss_pred             HHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh
Q 008585          356 RSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE  432 (560)
Q Consensus       356 ~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~  432 (560)
                      +.+.+  ....+..++.+  +-.++.+...++.+-. ...+      +++..+..++.+.+..+|..+..++.+++...+
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            22211  24566666655  3468899999998833 2233      368889999989999999999999999995422


Q ss_pred             HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       433 ~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      ....+  .+.+..+-.++.+.++.+++.|..+|-.+...
T Consensus       183 D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          183 DSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            11111  24466677889999999999999999999754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.05  E-value=4e-07  Score=77.85  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=91.3

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      .++.++..|++.++..+..|+..|..+-            ...++.|+.+|+++++.+|..|+++|+.+..         
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~------------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD---------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhC------------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence            4667777888888888888877776542            1237899999999999999999999998863         


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (560)
                       ...++.|+..|++.++.+|..++++|.++..          ...++.|+.+++++++.++..++.+|.++
T Consensus        72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence             1258999999999999999999999999852          12358899999999999999999998764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.96  E-value=2.8e-05  Score=74.19  Aligned_cols=183  Identities=9%  Similarity=0.125  Sum_probs=128.5

Q ss_pred             HHHHhccCChHHHHHHHHHHHH-hcC-CchhHHHHHh-cCcHHHHHHHh-hcCCchhHHHHHHHHHHHHccCC--hhHH-
Q 008585          283 LIEICQTGDSVSQAAAACTLKN-ISA-VPEVRQMLAE-EGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASN--ENLR-  355 (560)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~n-La~-~~~~~~~i~e-~g~v~~L~~lL-~~~~~~~v~~~a~~~L~~La~~~--~~~~-  355 (560)
                      +.+.+.+.++.-|..++..|.. +.. .++....-.+ ...+..+.+.+ ++.+. .++..|+.+|+.|+.+-  +... 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~-~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI-QAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHhcccccccH
Confidence            4466788999999999999999 863 2222100001 23577888888 56665 78999999999998521  1111 


Q ss_pred             HHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHH--hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-
Q 008585          356 RSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-  430 (560)
Q Consensus       356 ~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-  430 (560)
                      .+.  .-.++.++..+.+  +.++..+..++.+++.........  -..+++.|+..|++.++.+++.++.+|..++.. 
T Consensus       100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            111  1247888888876  567888888888888621110000  113688889999999999999999999998843 


Q ss_pred             hh----HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          431 AE----MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       431 ~~----~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ..    ... ......+|.|.+++...+.++|..|..+|..++
T Consensus       178 ~~~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          178 KDGYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             CSCSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            21    112 222467999999999999999999999999996

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.89  E-value=0.00065  Score=66.02  Aligned_cols=177  Identities=14%  Similarity=0.078  Sum_probs=134.0

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      .+..++..|++++.+.+..++..|..+..++......++..+|+..|+......+...+..++.++.+|-.+.....-++
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence            36788889999999999999999999877888899999999999999999999999999999999999988866555555


Q ss_pred             -hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHh----------CCChHHHHHHhc---cCChHHHHHHH
Q 008585          235 -SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVG----------HGGVRPLIEICQ---TGDSVSQAAAA  299 (560)
Q Consensus       235 -~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~----------~g~i~~Lv~ll~---~~~~~~~~~a~  299 (560)
                       ....|..+..++.+.+..+...|..+|..+... +.+...+.+          .--+..|+.+|+   +.+.+++..+.
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence             445788888899988888999999999999764 334332221          123788999997   67889998877


Q ss_pred             HHHHHhc---CCchhHHHHH----hcCcHHHHHHHhhcC
Q 008585          300 CTLKNIS---AVPEVRQMLA----EEGIVSVMIKLLDCG  331 (560)
Q Consensus       300 ~aL~nLa---~~~~~~~~i~----e~g~v~~L~~lL~~~  331 (560)
                      ..+-.+-   .+.+.+..+.    +.|.-..+...+...
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            6665442   2233233333    344445555656553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.79  E-value=0.00051  Score=66.72  Aligned_cols=175  Identities=14%  Similarity=0.162  Sum_probs=125.3

Q ss_pred             HHHHHhccCChHHHHHHHHHHHH-hcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-
Q 008585          282 PLIEICQTGDSVSQAAAACTLKN-ISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV-  359 (560)
Q Consensus       282 ~Lv~ll~~~~~~~~~~a~~aL~n-La~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~-  359 (560)
                      .+++-|.+.+...++.++.-|.. ++.+.+....|++.+++.+|++....++. ..+.+++.+|.+|..+..+. .-++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g-N~q~Y~L~AL~~LM~~v~Gm-~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH-NYQSYILRALGQLMLFVDGM-LGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTSHHHH-HHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh-HHHHHHHHHHHHHHhccccc-cchhC
Confidence            34455556677778888889998 67788999999999999999999999886 89999999999999875554 3344 


Q ss_pred             hCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHh----------CCcHHHHHHHHh---cCCHHHHHHHHH
Q 008585          360 SEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLIS----------LGFFPRLVHVLK---AGSLGAQQAAAS  422 (560)
Q Consensus       360 ~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~----------~~~i~~Lv~lL~---~~~~~v~~~A~~  422 (560)
                      +...+..+..++.+  ..+...|+..|.+++.  +.+...+.+          ......|+.+|+   +.+.+++..|..
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            44568888888876  4567889999999987  223332211          123789999997   678999999988


Q ss_pred             HHHHHhCC---hh----HHHHHHhcCCHHHHHHHHccC--CHHHH
Q 008585          423 ALCRVCTS---AE----MKKLVGEAGCTPLLIKLLEAK--PNSVR  458 (560)
Q Consensus       423 aL~~La~~---~~----~~~~i~~~g~i~~Lv~ll~s~--~~~v~  458 (560)
                      .|-.+-..   .+    ....+.+.|.-..+.+.+...  +++++
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~  324 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLR  324 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHH
Confidence            77766432   23    233344445444555556543  44443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.63  E-value=0.0051  Score=69.06  Aligned_cols=288  Identities=15%  Similarity=0.147  Sum_probs=187.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh--HHHHHhCC
Q 008585          201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM--ARAIVGHG  278 (560)
Q Consensus       201 Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~--~~~l~~~g  278 (560)
                      +.+-+...+..-+..++..+..+...+..- ..+..+.+..+.+.+.+....  +.|+.++..|+.....  ..+..--+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~   95 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ   95 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence            333344433333455555666654432100 111125677777777765443  8999999999854221  11222225


Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHH
Q 008585          279 GVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR  356 (560)
Q Consensus       279 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~  356 (560)
                      .++.++..+.+....++..|-.++..+..  +++..     ..++|.++..+.+......+..|+.++..|+...+.   
T Consensus        96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~---  167 (986)
T 2iw3_A           96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD---  167 (986)
T ss_dssp             THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH---
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH---
Confidence            78999999999889999888777776653  33332     236899999998765337899999999999975432   


Q ss_pred             HHHh--CCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-
Q 008585          357 SVVS--EGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-  430 (560)
Q Consensus       357 ~i~~--~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-  430 (560)
                      .+..  ...+|.+...+-+  +++...|..++..+|. -.+.+   -..++|.|++.+.+++. |    -.++..|+.. 
T Consensus       168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~-~----~~~~~~l~~~t  239 (986)
T 2iw3_A          168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTE-V----PETVHLLGATT  239 (986)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTH-H----HHHHHHHTTCC
T ss_pred             HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhh-h----HHHHHHhhcCe
Confidence            2221  3457777777765  6789999999999998 23332   25689999999988753 3    2345555533 


Q ss_pred             --hh-HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC---CChhhHHHhhhCCChHHHHhccCCCCchhhHHHH
Q 008585          431 --AE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT---LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA  504 (560)
Q Consensus       431 --~~-~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~---~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a  504 (560)
                        .+ ....+  +=.+|.|.+-|......++..++..+-||+.   ++.....|+  .+.++.+-...+.-.++++++.+
T Consensus       240 fv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~  315 (986)
T 2iw3_A          240 FVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVT  315 (986)
T ss_dssp             CCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHH
T ss_pred             eEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHH
Confidence              11 11122  1248888888988888899999999999983   444556666  37778887777766566777777


Q ss_pred             HHHHHHh
Q 008585          505 VACLASL  511 (560)
Q Consensus       505 ~~~L~~L  511 (560)
                      -.++..|
T Consensus       316 ~~a~~~l  322 (986)
T 2iw3_A          316 LRALKTL  322 (986)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.17  E-value=0.043  Score=62.65  Aligned_cols=246  Identities=13%  Similarity=0.121  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCchHHHHHhC-----CCH
Q 008585          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT------ATSPRIREKTVTVICSLAESGSCENWLVSE-----GVL  239 (560)
Q Consensus       171 ~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~------~~~~~v~~~A~~~L~~La~~~~~~~~l~~~-----g~i  239 (560)
                      +..|...|..++...++.   +.. -.++.+.+.+.      +.++..++.|+.+++.++........-...     ...
T Consensus       378 R~aa~~~L~~l~~~~~~~---v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~  453 (960)
T 1wa5_C          378 RRACTDFLKELKEKNEVL---VTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV  453 (960)
T ss_dssp             HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred             HHHHHHHHHHHHHHcchh---HHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence            444555666666544321   111 12334444454      456889999999999998642110000000     122


Q ss_pred             H----HHHHhhhcC---CHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-
Q 008585          240 P----PLIRLVESG---STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-  309 (560)
Q Consensus       240 ~----~Lv~lL~~~---~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-  309 (560)
                      +    .++..|.+.   ++.+|..+++++.+++..  ++...     ..++.++..+.++++.++..|+.+|.+++... 
T Consensus       454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            2    233345666   889999999999999764  22222     23477888888888999999999999998631 


Q ss_pred             -------h-hHHHHHh--cCcHHHHHHHhhcCC----chhHHHHHHHHHHHHccCC-hhHHHHHHhCCCHHHHHHhc---
Q 008585          310 -------E-VRQMLAE--EGIVSVMIKLLDCGI----LLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYL---  371 (560)
Q Consensus       310 -------~-~~~~i~e--~g~v~~L~~lL~~~~----~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~ll---  371 (560)
                             + .+..+..  ...++.|+.++....    .....+.+..+|..++... +.....+.  ..++.+...+   
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHH
Confidence                   2 1222222  346677777777641    0013355666666654311 11111110  1233344333   


Q ss_pred             -cCC---ccHHHHHHHHHHhhcc--ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008585          372 -DGP---LPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV  427 (560)
Q Consensus       372 -~~~---~~~~~a~~~L~nla~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L  427 (560)
                       +++   .....++.+|+.++..  .....-....+++.+...|.....+....+...+..+
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV  668 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence             232   2344567777777652  1111223345677777777765444444444444443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.15  E-value=0.0086  Score=56.82  Aligned_cols=176  Identities=13%  Similarity=0.097  Sum_probs=123.5

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh----cCCCHHHHHHHHHHHHHHhc----CCc
Q 008585          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL----TATSPRIREKTVTVICSLAE----SGS  228 (560)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL----~~~~~~v~~~A~~~L~~La~----~~~  228 (560)
                      .++...|.+.+...+.++++.|.+....+++....     .++.+++.+    -++++.+...++.+|..+..    .+.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~-----~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS-----NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH-----THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            35667777888888999999999988776644322     333344433    36678888888888777632    211


Q ss_pred             -hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          229 -CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                       ....- ..-.+|.|+.-+.+....+|..+-.++..+....+...      .++.+++-+++.++..|..++..+.++-.
T Consensus       124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~------v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLK------MTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH------HHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence             11111 12268999999999999999999888877754322222      23677788889999999999998888853


Q ss_pred             CchhHHHHHhcCcH---HHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          308 VPEVRQMLAEEGIV---SVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       308 ~~~~~~~i~e~g~v---~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      ..+..    -..++   +.+.+++.+.+. .||..|+.++..+-.
T Consensus       197 ~~G~~----~~~~l~~~~~ia~ll~D~d~-~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS----PLKSLSVEKTVAPFVGDKDV-NVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG----GGGGGCHHHHHGGGGGCSSH-HHHHHHHHHHHHHHH
T ss_pred             hcCCC----ccccccchHHHHHHHcCCCH-HHHHHHHHHHHHHHH
Confidence            22211    23467   999999999887 899999999887654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.13  E-value=0.063  Score=49.82  Aligned_cols=211  Identities=15%  Similarity=0.163  Sum_probs=151.7

Q ss_pred             hHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhc-------cCCcc-------HHHHHHHHHHhhc-cccHHHHHh
Q 008585          335 GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL-------DGPLP-------QESAVGALRNLVG-SVSQEVLIS  398 (560)
Q Consensus       335 ~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll-------~~~~~-------~~~a~~~L~nla~-~~~~~~l~~  398 (560)
                      +.|+.|+.-|..=-...++....+.+ -|.+..|++=+       ..|..       .-+|+..|..+|. ++.+..+++
T Consensus        16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~   95 (268)
T 2fv2_A           16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA   95 (268)
T ss_dssp             TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence            45888877766655555666666665 45555554433       22222       2577888888888 788999999


Q ss_pred             CCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      .++.-.|..+|+..+     ..++-.+..+++.+.+.  ++.-..+.+.+.+|..++.++.+++-.+..|...+..+..+
T Consensus        96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~d  175 (268)
T 2fv2_A           96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD  175 (268)
T ss_dssp             TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred             ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc
Confidence            999989999998654     57888999999999854  78888889999999999999999999999999999998866


Q ss_pred             ChhhHHH-------hhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHc-------ChhHHHHHhhccC
Q 008585          472 PQNCREV-------KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISY-------GAIGYLKKLSEMD  537 (560)
Q Consensus       472 ~~~~~~~-------~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~-------g~i~~L~~L~~~~  537 (560)
                      +.....+       ..=...+..++.-+...+....-++.+.+...|+.++..|..+.+.       |....+.    .+
T Consensus       176 d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l----~~  251 (268)
T 2fv2_A          176 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVL----KD  251 (268)
T ss_dssp             HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHH----TS
T ss_pred             chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHH----hc
Confidence            6543332       2212344555555555555567789999999999999999888652       3222222    36


Q ss_pred             chhHHHHHHHHh
Q 008585          538 IPGARKLLERLE  549 (560)
Q Consensus       538 ~~~akkl~~~l~  549 (560)
                      |+..|+.+.-|-
T Consensus       252 D~~~k~~l~qLl  263 (268)
T 2fv2_A          252 DTTTKRWLAQLV  263 (268)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            777777766554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.86  E-value=0.036  Score=63.30  Aligned_cols=328  Identities=10%  Similarity=0.078  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH-
Q 008585          170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-----ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI-  243 (560)
Q Consensus       170 ~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-----~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-  243 (560)
                      .+..++..|..+....++....... ..++..++++.     ..+..+...++..+..++..+..+..+...+.++.++ 
T Consensus       262 vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~  340 (960)
T 1wa5_C          262 VKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE  340 (960)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence            4567788888887665543322221 34555566664     2347888999999999876554433321112344444 


Q ss_pred             ----Hhhh----c-----CC--------------HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc------cC
Q 008585          244 ----RLVE----S-----GS--------------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------TG  290 (560)
Q Consensus       244 ----~lL~----~-----~~--------------~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~------~~  290 (560)
                          ..+.    +     ++              ...|..|..+|..++....  ..+. ...++.+...+.      +.
T Consensus       341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~~~  417 (960)
T 1wa5_C          341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDPSK  417 (960)
T ss_dssp             HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC----
T ss_pred             HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCcch
Confidence                2221    0     01              1356677777777765432  1111 001233333444      46


Q ss_pred             ChHHHHHHHHHHHHhcCCchhHHHHHhc-----CcHH----HHHHHhhcC---CchhHHHHHHHHHHHHccCChhHHHHH
Q 008585          291 DSVSQAAAACTLKNISAVPEVRQMLAEE-----GIVS----VMIKLLDCG---ILLGSKEYAAECLQNLTASNENLRRSV  358 (560)
Q Consensus       291 ~~~~~~~a~~aL~nLa~~~~~~~~i~e~-----g~v~----~L~~lL~~~---~~~~v~~~a~~~L~~La~~~~~~~~~i  358 (560)
                      ++..+..|+.+++.++.....+..-...     ...+    .++..+.++   ++ .+|..++++++.++..-.  .+. 
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p-~vr~~a~~~lg~~~~~~~--~~~-  493 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHI-ILRVDAIKYIYTFRNQLT--KAQ-  493 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCH-HHHHHHHHHHHHTGGGSC--HHH-
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCc-eehHHHHHHHHHHHhhCC--HHH-
Confidence            7788999999999997431101000000     1222    233445555   54 799999999999987421  111 


Q ss_pred             HhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc-c---------cHHHHH--hCCcHHHHHHHHhcCC---HH--HHHH
Q 008585          359 VSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS-V---------SQEVLI--SLGFFPRLVHVLKAGS---LG--AQQA  419 (560)
Q Consensus       359 ~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~-~---------~~~~l~--~~~~i~~Lv~lL~~~~---~~--v~~~  419 (560)
                       -...++.++..+.+  +.++..|+.+|.+++.. .         .+..+.  -...++.|+.+++...   +.  ....
T Consensus       494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~  572 (960)
T 1wa5_C          494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (960)
T ss_dssp             -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence             12236677777766  44789999999999872 1         122221  1234555666666541   11  2345


Q ss_pred             HHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCC--ChhhHHHhhhCCChHHHHh
Q 008585          420 AASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQ  490 (560)
Q Consensus       420 A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~-----s~~~~v~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~  490 (560)
                      +..+|..++..  ++...++  ...++.|+..+.     ..+...+....++|..++..  +.....+.  ...++.+..
T Consensus       573 l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~  648 (960)
T 1wa5_C          573 LMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLT  648 (960)
T ss_dssp             HHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHH
Confidence            56666665422  2222211  123455555543     23556777889999988843  23333332  244566667


Q ss_pred             ccCCCCchhhHHHHHHHHHHh
Q 008585          491 LLDPSPQNTAKKYAVACLASL  511 (560)
Q Consensus       491 lL~~~~~~~~~~~a~~~L~~L  511 (560)
                      .|+.... ....++..++..+
T Consensus       649 iL~~~~~-~~~~~~~~i~~~l  668 (960)
T 1wa5_C          649 VFSEDIQ-EFIPYVFQIIAFV  668 (960)
T ss_dssp             HHHTTCT-TTHHHHHHHHHHH
T ss_pred             HHHhhhH-hhHHHHHHHHHHH
Confidence            6765422 2444555554433

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.016  Score=55.81  Aligned_cols=184  Identities=15%  Similarity=0.107  Sum_probs=122.3

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhChHHHH--HHh-hC-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc----hH
Q 008585          159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVL--AVM-GR-SNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE  230 (560)
Q Consensus       159 Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~--~i~-~~-g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~  230 (560)
                      +-.+|.+.+-..|.+|+..|..+....+....  ... .- ...+.+-..+++.+..++..++.++..++..-.    .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            45788999999999999999998865442211  111 11 235566678888899999999999998876421    11


Q ss_pred             H--HHHhCCCHHHHHH-hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          231 N--WLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       231 ~--~l~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                      .  ...-..+++.|+. .+.+....++..+..++..+.........+     ++.++..+.+.+|.++..++..|.++..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            1  1222345677774 578888889998888887775432211112     2666677888999999999888887743


Q ss_pred             C--ch-h-HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          308 V--PE-V-RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       308 ~--~~-~-~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      .  .. . ..... ..+++.+..++.+.+. .||..|..++..+-.
T Consensus       169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~-~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDR-NVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHTTTTCCHHHHH-HHHGGGHHHHHTCSSH-HHHHHHHHHHHHHHT
T ss_pred             HhCCCcCCchhHH-HHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHH
Confidence            1  11 1 11111 1245567778888886 899999999988865

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.53  E-value=0.0056  Score=63.00  Aligned_cols=239  Identities=12%  Similarity=0.137  Sum_probs=153.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHHHhCCCHHHHHHhhhc----------CCHHHHHHHHHHHHHh
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVES----------GSTVGKEKATISLQRL  264 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~L  264 (560)
                      .+.|+.-|=++.+++|.-|+.+|..+.....   .+..-.+....-.++-++.-          --.++|+.++.+|..+
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL  255 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI  255 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence            4556666667789999999999999865432   11100111223333333321          1347999999999999


Q ss_pred             hCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHH
Q 008585          265 SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL  344 (560)
Q Consensus       265 a~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L  344 (560)
                       ..-+..     ..++..++..+..+.++++..++-.|.++.   +....  -.++++.++.-|.+.++ +|+..|+.+|
T Consensus       256 -~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DD-DVRAVAAetL  323 (800)
T 3oc3_A          256 -YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDE-DIKLLSAELL  323 (800)
T ss_dssp             -TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSH-HHHHHHHHHH
T ss_pred             -HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCccc-HHHHHHHHHh
Confidence             652221     455566666667789999999999999992   21111  24568888888888886 8999999999


Q ss_pred             HHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 008585          345 QNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQA  419 (560)
Q Consensus       345 ~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~  419 (560)
                      .-++. .+. -..+     +..+...|.+    .......+..|..|+. +..  .-.....+|+|..++++.-+.|+..
T Consensus       324 iPIA~-p~~-l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A  394 (800)
T 3oc3_A          324 CHFPI-TDS-LDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS  394 (800)
T ss_dssp             TTSCC-SST-HHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred             hhhcc-hhh-HHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence            99982 111 1111     3344444432    3345667778888877 321  1112377999999999999999999


Q ss_pred             HHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585          420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (560)
Q Consensus       420 A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~  466 (560)
                      +..++..+. ..+.-+.+.        -+++-..+++++..+..+-.
T Consensus       395 VL~TL~tfL-~~~~LRLIF--------QNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          395 ILNMVKNLS-EESIDFLVA--------EVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHTTTCC-CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence            999998887 222222221        12334577888887777664

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.44  E-value=0.062  Score=49.90  Aligned_cols=171  Identities=20%  Similarity=0.248  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhh
Q 008585          174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLV  246 (560)
Q Consensus       174 A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL  246 (560)
                      |+.-|..++ .+++.+..+.++...-.|-.+|+..+     ..+|-.++.+++.|...++  ....+.+.+++|..++.+
T Consensus        76 aLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim  154 (268)
T 2fv2_A           76 ALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM  154 (268)
T ss_dssp             HHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence            343444444 58889999999888888888887654     5778899999999987654  677888999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhhCChhhHHHHHhC--------CChHHHH-HHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585          247 ESGSTVGKEKATISLQRLSMSAEMARAIVGH--------GGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (560)
Q Consensus       247 ~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~--------g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (560)
                      +.|+.-.+..|..++.++-.++..-..+.+.        .++..++ .+.+++++.+..+..++-..|+.++..+..+..
T Consensus       155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~  234 (268)
T 2fv2_A          155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ  234 (268)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999998777665444331        1222222 233567889999999999999999988888764


Q ss_pred             c--CcH--HHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585          318 E--GIV--SVMIKLLDCGILLGSKEYAAECLQNL  347 (560)
Q Consensus       318 ~--g~v--~~L~~lL~~~~~~~v~~~a~~~L~~L  347 (560)
                      .  ..+  ..+..+++ ++. .++.+-...+.|+
T Consensus       235 ~LP~~Lrd~tf~~~l~-~D~-~~k~~l~qLl~n~  266 (268)
T 2fv2_A          235 CLPDQLKDTTFAQVLK-DDT-TTKRWLAQLVKNL  266 (268)
T ss_dssp             HSCGGGTSSTTHHHHT-SCH-HHHHHHHHHHHHS
T ss_pred             hCcHHhhChHHHHHHh-cCH-HHHHHHHHHHHhc
Confidence            1  000  11222232 232 5666666666654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.38  E-value=0.26  Score=56.11  Aligned_cols=212  Identities=18%  Similarity=0.153  Sum_probs=125.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh---hcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChH
Q 008585          206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---ESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVR  281 (560)
Q Consensus       206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~  281 (560)
                      .+.++..++.++.+++.++......    ....++.++..+   .++++.++..+++++.+++.. .+.. .. -...++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHHH
Confidence            4567889999999999999764310    012344444443   335788999999999999753 2222 22 246788


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCC-chhHHHHHHHHHHHHccCCh-hHHHH
Q 008585          282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS  357 (560)
Q Consensus       282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~  357 (560)
                      .++..+.+  +.++..|+.+|.+++.  +.+..+..  ...+..+..++.+++ +...+.....+++.++...+ .....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~  608 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK  608 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            88888854  8899999999999984  22222221  234555666666532 23688888999999886432 22222


Q ss_pred             HHhCCCHHHHHHhcc----C---CccH---HHHHHHHHHhhc--c--cc-------------------HHHHHhCCcHHH
Q 008585          358 VVSEGGIRSLLAYLD----G---PLPQ---ESAVGALRNLVG--S--VS-------------------QEVLISLGFFPR  404 (560)
Q Consensus       358 i~~~g~l~~L~~ll~----~---~~~~---~~a~~~L~nla~--~--~~-------------------~~~l~~~~~i~~  404 (560)
                      .+ ...++.+...+.    .   ++.+   ...+.+|+.+..  .  ..                   .-.-....+++.
T Consensus       609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (963)
T 2x19_B          609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL  687 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence            22 122333433332    2   1122   234455554444  1  00                   011122334555


Q ss_pred             HHHHHhc--CCHHHHHHHHHHHHHHh
Q 008585          405 LVHVLKA--GSLGAQQAAASALCRVC  428 (560)
Q Consensus       405 Lv~lL~~--~~~~v~~~A~~aL~~La  428 (560)
                      +..++..  .+..+.+.++.++..++
T Consensus       688 ~~~~l~~~~~~~~v~e~~~~~l~~~~  713 (963)
T 2x19_B          688 IQKVLSKWLNDAQVVEAVCAIFEKSV  713 (963)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHH
Confidence            5556643  46789999999998875

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.28  E-value=0.12  Score=58.93  Aligned_cols=210  Identities=15%  Similarity=0.079  Sum_probs=120.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh---h--cCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChH
Q 008585          208 TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---E--SGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVR  281 (560)
Q Consensus       208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~--~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~  281 (560)
                      .+...++.++.+++.++.......    ...++.++.++   .  +.++.++..+++++..++.. .++...+  ...++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence            467889999999999987543111    12344444433   2  34888999999999998752 1111101  12345


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCC-chhHHHHHHHHHHHHccCCh-hHHHH
Q 008585          282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS  357 (560)
Q Consensus       282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~  357 (560)
                      .|+..+ +  +.++..|+.++.+++.  +.+..+..  ...+..+.+++.+++ +...+..+..+++.++..-+ .....
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            666666 3  7889999999999984  33344432  456667777777642 23788899999999876321 21212


Q ss_pred             HHhCCCHHHHHHhc----cCCc----cHHHHHHHHHHhhc-----ccc----------HH--HHHhCCcHHHHHHHHhc-
Q 008585          358 VVSEGGIRSLLAYL----DGPL----PQESAVGALRNLVG-----SVS----------QE--VLISLGFFPRLVHVLKA-  411 (560)
Q Consensus       358 i~~~g~l~~L~~ll----~~~~----~~~~a~~~L~nla~-----~~~----------~~--~l~~~~~i~~Lv~lL~~-  411 (560)
                      .++ ..+++++..+    +.+.    .+.....++..++.     ...          .+  .-....+++.+..++.. 
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~  703 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW  703 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred             HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence            111 1233333332    2221    23344444444443     110          00  11224567777777764 


Q ss_pred             -CCHHHHHHHHHHHHHHhC
Q 008585          412 -GSLGAQQAAASALCRVCT  429 (560)
Q Consensus       412 -~~~~v~~~A~~aL~~La~  429 (560)
                       .+..+.+.+++++++++.
T Consensus       704 ~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          704 VEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence             367999999999999874

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.12  E-value=1.6  Score=49.51  Aligned_cols=298  Identities=10%  Similarity=0.049  Sum_probs=155.6

Q ss_pred             CHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcC----------CchHHHHHh--CCCHHHHHHhhhcC--------CH
Q 008585          197 NIAALVQLLTA-----TSPRIREKTVTVICSLAES----------GSCENWLVS--EGVLPPLIRLVESG--------ST  251 (560)
Q Consensus       197 ~v~~Lv~lL~~-----~~~~v~~~A~~~L~~La~~----------~~~~~~l~~--~g~i~~Lv~lL~~~--------~~  251 (560)
                      .++.|+.+...     .+.++...++..+..++..          ...+..+..  ...++.++..+..+        ++
T Consensus       349 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~  428 (971)
T 2x1g_F          349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSS  428 (971)
T ss_dssp             HHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCH
T ss_pred             HHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCH
Confidence            45556665533     3577888898888777651          111111111  12444444444221        11


Q ss_pred             -------HHHHHHHHHHHHhhCChh-h-HHHHHhCCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585          252 -------VGKEKATISLQRLSMSAE-M-ARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVPEVRQMLAE  317 (560)
Q Consensus       252 -------~~~~~a~~~L~~La~~~~-~-~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (560)
                             ..|..+..+|..++.... . -..+.     +.+-..+..     .++..+..++.+++.++.......    
T Consensus       429 ~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~-----~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----  499 (971)
T 2x1g_F          429 DDLECFRCYRQDISDTFMYCYDVLNDYILEILA-----AMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----  499 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH-----HHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----
Confidence                   345566677777665322 1 11111     222233332     578889999999999986321110    


Q ss_pred             cCcHHHHHHHh---h--cCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhcccc
Q 008585          318 EGIVSVMIKLL---D--CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS  392 (560)
Q Consensus       318 ~g~v~~L~~lL---~--~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~  392 (560)
                      ...++.++.++   .  +.++ .++..++++++.++..-....+.+  ...++.++..++ +.++..|+.++.+++.. .
T Consensus       500 ~~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~-~~v~~~A~~al~~l~~~-~  574 (971)
T 2x1g_F          500 KRQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN-SSMSAQATLGLKELCRD-C  574 (971)
T ss_dssp             -CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH-SSCHHHHHHHHHHHHHH-C
T ss_pred             hHHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC-hHHHHHHHHHHHHHHHH-H
Confidence            12344444433   2  2344 799999999999875211100101  123555666664 88999999999999962 2


Q ss_pred             HHHHH--hCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhCC---hhHHHHHHhcCCHHHHHHHH----ccC--CHHHHH
Q 008585          393 QEVLI--SLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKLL----EAK--PNSVRE  459 (560)
Q Consensus       393 ~~~l~--~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~La~~---~~~~~~i~~~g~i~~Lv~ll----~s~--~~~v~~  459 (560)
                      ...+.  -..++..+..++..+  +...+..+..+++.++..   ++....+  ...++++++.+    ...  +++.+.
T Consensus       575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~  652 (971)
T 2x1g_F          575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL--DIIVSPCFEELQAICQADSKTPAARI  652 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhHH
Confidence            22221  234566667777763  578899999999998743   2222222  12344444433    332  333333


Q ss_pred             HHHHHHHHhc---C--CC------------hhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhC
Q 008585          460 VAAQAISSLV---T--LP------------QNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLS  512 (560)
Q Consensus       460 ~A~~aL~~L~---~--~~------------~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~  512 (560)
                      ....++..|+   .  ..            .....+.  ...++.+.++++.. ..+.+.+.++.++..++
T Consensus       653 ~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~  721 (971)
T 2x1g_F          653 RTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAI  721 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            3333443333   1  11            1112222  24556666666433 23457777777777654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.89  E-value=0.0032  Score=59.32  Aligned_cols=165  Identities=16%  Similarity=0.114  Sum_probs=101.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhC
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH  277 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~  277 (560)
                      ...+..+++++++.+|..++..|.                 .+.|..++++.++.+|..++..   +.            
T Consensus        76 ~~~l~~L~~D~~~~VR~~aA~~L~-----------------~~~L~~ll~D~d~~VR~~aA~~---l~------------  123 (244)
T 1lrv_A           76 VEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADR---LP------------  123 (244)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHH---SC------------
T ss_pred             HHHHHHHccCcCHHHHHHHHHHCC-----------------HHHHHHHHcCCCHHHHHHHHHh---CC------------
Confidence            455666677777888877775420                 1346667778888888877763   21            


Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHH
Q 008585          278 GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS  357 (560)
Q Consensus       278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~  357 (560)
                        .+.|..+++++++.+|..++..   +.              .+.+..++++++. .|+..++..   +.         
T Consensus       124 --~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~-~VR~~aa~~---l~---------  171 (244)
T 1lrv_A          124 --LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDR-QVRKLVAKR---LP---------  171 (244)
T ss_dssp             --TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCH-HHHHHHHHH---SC---------
T ss_pred             --HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCH-HHHHHHHHc---CC---------
Confidence              1234566677888888777763   21              1233455566665 777777664   11         


Q ss_pred             HHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHH
Q 008585          358 VVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK  435 (560)
Q Consensus       358 i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~  435 (560)
                            .+.+..++.+  +.++..++..   +             ..+.|..++.+.+..|+..++..+.          
T Consensus       172 ------~~ll~~ll~D~d~~VR~aaa~~---l-------------~~~~L~~Ll~D~d~~VR~~aa~~l~----------  219 (244)
T 1lrv_A          172 ------EESLGLMTQDPEPEVRRIVASR---L-------------RGDDLLELLHDPDWTVRLAAVEHAS----------  219 (244)
T ss_dssp             ------GGGGGGSTTCSSHHHHHHHHHH---C-------------CGGGGGGGGGCSSHHHHHHHHHHSC----------
T ss_pred             ------HHHHHHHHcCCCHHHHHHHHHh---C-------------CHHHHHHHHcCCCHHHHHHHHHcCC----------
Confidence                  1233344555  3455555543   2             2355677788888888888887642          


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585          436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (560)
Q Consensus       436 ~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~  466 (560)
                             .+.|..+ +..+..||..+...|.
T Consensus       220 -------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          220 -------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             -------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             -------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                   3556666 8888889988876553

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.82  E-value=0.032  Score=57.59  Aligned_cols=242  Identities=14%  Similarity=0.145  Sum_probs=153.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh--hCCCHHHHHHhh--cC-----CC---HHHHHHHHHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLL--TA-----TS---PRIREKTVTVICS  222 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~--~~g~v~~Lv~lL--~~-----~~---~~v~~~A~~~L~~  222 (560)
                      ....|+.-|-+..-+.|.-|+-+|+++++......-...  +.+..-.|+-++  +.     +|   .-+||.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            667788888899999999999999999976542111111  112233333333  21     11   6799999999999


Q ss_pred             HhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHH
Q 008585          223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL  302 (560)
Q Consensus       223 La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL  302 (560)
                      + .+-+..     ..++..++..+....++++..+.-.|..+   .+....  =.++++.++.-|++.+.+++..|+.+|
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetL  323 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELL  323 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence            9 543321     33455555566778999999999999998   111111  134467788888999999999999999


Q ss_pred             HHhcCCchhHHHHHhcCcHHHHHHHhhcCCch-hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585          303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILL-GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES  379 (560)
Q Consensus       303 ~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~-~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~  379 (560)
                      ..++ .++...     .++..+...|.+-++. .........|..|+......   -.....+|.|..++.+  +++|..
T Consensus       324 iPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~A  394 (800)
T 3oc3_A          324 CHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTS  394 (800)
T ss_dssp             TTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred             hhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHH
Confidence            9998 222221     2344444445443322 34555666777777644311   1123567888888887  678999


Q ss_pred             HHHHHHHhhccccHHHHHhCCcHHHHH-HHHhcCCHHHHHHHHHHHH
Q 008585          380 AVGALRNLVGSVSQEVLISLGFFPRLV-HVLKAGSLGAQQAAASALC  425 (560)
Q Consensus       380 a~~~L~nla~~~~~~~l~~~~~i~~Lv-~lL~~~~~~v~~~A~~aL~  425 (560)
                      ++.++..+..         ..++..+. ++|-..+++++..+..+-.
T Consensus       395 VL~TL~tfL~---------~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          395 ILNMVKNLSE---------ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHTTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999988861         11333333 3455677888877776653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.61  E-value=0.61  Score=45.24  Aligned_cols=243  Identities=13%  Similarity=0.154  Sum_probs=165.4

Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-h----hHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHh
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-E----MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNI  305 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~----~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL  305 (560)
                      .+...+.+..|+..|..-+.+.|..++.+..++-... +    ....+..  --..|..+++. +++++-..+-..|+..
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            4556688999999999999999999999999886532 2    2233333  12333333333 4566666777788888


Q ss_pred             cCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHH
Q 008585          306 SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALR  385 (560)
Q Consensus       306 a~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~  385 (560)
                      ..++..++.+.+.+.+..+++.+..++- ++..-|..++..+-..+.......            +             .
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~F-diasDAf~TfkelLt~Hk~lvaef------------L-------------~  204 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTF-DIASDAFATFKDLLTRHKLLSAEF------------L-------------E  204 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSH-HHHHHHHHHHHHHHHSSHHHHHHH------------H-------------H
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhccHHHHHHH------------H-------------H
Confidence            8999999999998889999999998886 788888888888776544321111            1             0


Q ss_pred             HhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHH----HHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585          386 NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK----KLVGEAGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       386 nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~----~~i~~~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                           .+-+     .+....-.+|.+++.-+++.+...|+.+--+..+.    +++.+..-+..++.+|.+++..+|..|
T Consensus       205 -----~nyd-----~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EA  274 (341)
T 1upk_A          205 -----QHYD-----RFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEA  274 (341)
T ss_dssp             -----HTHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             -----HhHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhh
Confidence                 0111     25677778899999999999999999998664443    334444578999999999999999999


Q ss_pred             HHHHHHhcCCChh---hHHHhhh--CCChHHHHhccCCC-Cc---hhhHHHHHHHHHHhC
Q 008585          462 AQAISSLVTLPQN---CREVKRD--DKSVPNLVQLLDPS-PQ---NTAKKYAVACLASLS  512 (560)
Q Consensus       462 ~~aL~~L~~~~~~---~~~~~~~--~~~v~~Lv~lL~~~-~~---~~~~~~a~~~L~~L~  512 (560)
                      -.+.--...++..   ...++..  ++.+..|-....+. ++   ...|.+.+.-+..|-
T Consensus       275 FhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~  334 (341)
T 1upk_A          275 FHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK  334 (341)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred             hhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence            9998888755433   2333321  12233333333333 22   245667777776664

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.38  E-value=0.66  Score=52.72  Aligned_cols=299  Identities=11%  Similarity=0.078  Sum_probs=152.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--h-HHHH---Hh--CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh
Q 008585          197 NIAALVQLLTATSPRIREKTVTVICSLAESGS--C-ENWL---VS--EGVLPPLIRLVESGSTVGKEKATISLQRLSMSA  268 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~-~~~l---~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~  268 (560)
                      .++.+.+.+.  ++++++.|+.++..+.....  . ...+   ..  .+..+.+...+..++.......+..+..+....
T Consensus       242 ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~  319 (963)
T 2x19_B          242 LIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENH  319 (963)
T ss_dssp             HHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            3555666663  56789999999999987432  1 1111   11  011222323334455555566666666664321


Q ss_pred             hhHHHHHh--------CCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCC---------chhHHHHHh--cCcHHHH
Q 008585          269 EMARAIVG--------HGGVRPLIEICQT-----GDSVSQAAAACTLKNISAV---------PEVRQMLAE--EGIVSVM  324 (560)
Q Consensus       269 ~~~~~l~~--------~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~---------~~~~~~i~e--~g~v~~L  324 (560)
                      .  ..+..        ...+..++.+...     .++.+...++..+..++..         +.....+..  ...++.+
T Consensus       320 ~--~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  397 (963)
T 2x19_B          320 S--RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL  397 (963)
T ss_dssp             H--HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            1  11110        1334445554443     2444444444444444330         111111111  2234444


Q ss_pred             HHHhhcCCch--------------hHHHHHHHHHHHHccCCh-hHHHHHHhCCCHHHHHHhc----cCC--ccHHHHHHH
Q 008585          325 IKLLDCGILL--------------GSKEYAAECLQNLTASNE-NLRRSVVSEGGIRSLLAYL----DGP--LPQESAVGA  383 (560)
Q Consensus       325 ~~lL~~~~~~--------------~v~~~a~~~L~~La~~~~-~~~~~i~~~g~l~~L~~ll----~~~--~~~~~a~~~  383 (560)
                      +.-+..+++.              ..+..+..+|..++...+ ..-..+     ++.+...+    .++  ..++.++.+
T Consensus       398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~w~~~eaal~a  472 (963)
T 2x19_B          398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNL-----YDKLGRLLTSSEEPYSWQHTEALLYG  472 (963)
T ss_dssp             HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred             HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-----HHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4444322110              123445555655553111 111111     22222333    222  357889999


Q ss_pred             HHHhhccccHHHHHhCCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHH
Q 008585          384 LRNLVGSVSQEVLISLGFFPRLVHVLK---AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVRE  459 (560)
Q Consensus       384 L~nla~~~~~~~l~~~~~i~~Lv~lL~---~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~  459 (560)
                      ++.++..-..   .....++.++..+.   .+++.++..++++++.++.. .++.+.+  ...++.|+..+..  +.++.
T Consensus       473 l~~i~~~~~~---~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~  545 (963)
T 2x19_B          473 FQSIAETIDV---NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSV  545 (963)
T ss_dssp             HHHHTTSCCS---SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHH
T ss_pred             HHHHHhhcCc---hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHH
Confidence            9999872100   01344566665552   35688999999999999854 2223333  4678889988854  78999


Q ss_pred             HHHHHHHHhcCCCh-hhHHHhhhCCChHHHHhccCCCC-chhhHHHHHHHHHHhCC
Q 008585          460 VAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSP-QNTAKKYAVACLASLSP  513 (560)
Q Consensus       460 ~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~-~~~~~~~a~~~L~~L~~  513 (560)
                      .|+.++.+++.... ....++.  ..+..+.+++...+ ....+.....++..++.
T Consensus       546 ~A~~al~~l~~~~~~~l~p~~~--~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          546 SSVSTLKKICRECKYDLPPYAA--NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHHHHHHHHHHTGGGCTTTHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            99999999983211 1111111  22344455555432 33567777788877654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.33  E-value=0.5  Score=45.84  Aligned_cols=221  Identities=12%  Similarity=0.116  Sum_probs=160.4

Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh----HHHHHHh-CCCHHHHHHhccCCccHHHHHHHHHHh
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN----LRRSVVS-EGGIRSLLAYLDGPLPQESAVGALRNL  387 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~----~~~~i~~-~g~l~~L~~ll~~~~~~~~a~~~L~nl  387 (560)
                      ..+...+.+..++.-+..=+- +.|..+..+..++.....+    .-+++.. ...+..|+..-+++++-..+-..|+.+
T Consensus        72 ~ei~~~dll~~Li~~l~~L~f-E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDF-EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH-HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCc-hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            445567888888888887775 7888899888888774432    2234443 335666666667788899999999999


Q ss_pred             hc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh-CChhHHHHHHhcC---CHHHHHHHHccCCHHHHHHHH
Q 008585          388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREVAA  462 (560)
Q Consensus       388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g---~i~~Lv~ll~s~~~~v~~~A~  462 (560)
                      .. ......+.....+..+.++++.++-++...|..++..+- ++......+...+   +...+-+++.+++--+|..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            98 455666777778889999999999999999999998865 5555554554443   577788899999999999999


Q ss_pred             HHHHHhcCCChhhH---HHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC----ChhhHHHHHH--cChhHHHHHh
Q 008585          463 QAISSLVTLPQNCR---EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP----SKKCKKLMIS--YGAIGYLKKL  533 (560)
Q Consensus       463 ~aL~~L~~~~~~~~---~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~----~~~~r~~i~~--~g~i~~L~~L  533 (560)
                      ..|+.|..+..|..   .++.+...+..++.+|.+.. ..++-.|..++-...-    .+...+.+..  ...+.+|.+.
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f  309 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  309 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence            99999998887754   44556666788889998874 3466677777764443    2234444443  4566777776


Q ss_pred             hc
Q 008585          534 SE  535 (560)
Q Consensus       534 ~~  535 (560)
                      ..
T Consensus       310 ~~  311 (341)
T 1upk_A          310 QN  311 (341)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.97  E-value=1.8  Score=50.52  Aligned_cols=298  Identities=12%  Similarity=0.043  Sum_probs=166.7

Q ss_pred             chHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhcC---
Q 008585          154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL--TATSPRIREKTVTVICSLAES---  226 (560)
Q Consensus       154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~v~~~A~~~L~~La~~---  226 (560)
                      ..+..++..+.+.  +.+.+.+|-..|.++-...          ++...+...|  .+.++.+|..|+..|.+....   
T Consensus        11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            3355555554444  6667888887877764322          2333333333  345689999999999887643   


Q ss_pred             --Cc-hHHHHHhCCCHHHHHHhhh---cCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHH
Q 008585          227 --GS-CENWLVSEGVLPPLIRLVE---SGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAA  299 (560)
Q Consensus       227 --~~-~~~~l~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~  299 (560)
                        ++ .+..+ +..++..+...-.   +.+..++...+.++..++..+ +..|    .+.++.|+.++.+ ++..+..++
T Consensus        81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L  154 (1204)
T 3a6p_A           81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVM  154 (1204)
T ss_dssp             GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHH
T ss_pred             cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHH
Confidence              22 33332 3233443333211   136788899999999986642 2222    3556888888865 566677788


Q ss_pred             HHHHHhcCC-------chhH-----HHHHh--cCcHHHHHHHhhcC------------------CchhHHHHHHHHHHHH
Q 008585          300 CTLKNISAV-------PEVR-----QMLAE--EGIVSVMIKLLDCG------------------ILLGSKEYAAECLQNL  347 (560)
Q Consensus       300 ~aL~nLa~~-------~~~~-----~~i~e--~g~v~~L~~lL~~~------------------~~~~v~~~a~~~L~~L  347 (560)
                      .+|..++..       ...+     ..+.+  ..+++.+..++.+.                  ....+...++.++.+.
T Consensus       155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~  234 (1204)
T 3a6p_A          155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY  234 (1204)
T ss_dssp             HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence            888887531       1111     12222  12333444444331                  1113556667777655


Q ss_pred             ccCChhHHHHHHhCC--CHHHHHHhccCCccHHHHHHHHHHhhc-cccHHH---HHh---CCcHHHHHHHHh--------
Q 008585          348 TASNENLRRSVVSEG--GIRSLLAYLDGPLPQESAVGALRNLVG-SVSQEV---LIS---LGFFPRLVHVLK--------  410 (560)
Q Consensus       348 a~~~~~~~~~i~~~g--~l~~L~~ll~~~~~~~~a~~~L~nla~-~~~~~~---l~~---~~~i~~Lv~lL~--------  410 (560)
                      ..--+.  ..+++..  .++.+..++.+++++..|+.+|..+.. ....+.   ++.   ..++..++..+.        
T Consensus       235 l~Wi~~--~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~  312 (1204)
T 3a6p_A          235 IDWVSM--SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV  312 (1204)
T ss_dssp             TTTSCH--HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred             HhccCH--HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence            442221  2334433  677788888889999999999999997 221221   111   111334555542        


Q ss_pred             cCCHHHHHHHHHHHHHHhCChhHHHHHHh----------cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          411 AGSLGAQQAAASALCRVCTSAEMKKLVGE----------AGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       411 ~~~~~v~~~A~~aL~~La~~~~~~~~i~~----------~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      ..+.++.+..+..+..++.  +....+.+          .++++.++.+....+..+-..+...-..+..+
T Consensus       313 e~d~e~~k~l~~ll~~lg~--~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          313 EKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHHHHH--HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            1135666666777777662  22222211          13577777777777777777777765556544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.90  E-value=0.16  Score=48.59  Aligned_cols=181  Identities=12%  Similarity=0.029  Sum_probs=116.4

Q ss_pred             HHHHhccCChHHHHHHHHHHHHhcCC-ch--hHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh---hH
Q 008585          283 LIEICQTGDSVSQAAAACTLKNISAV-PE--VRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE---NL  354 (560)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~--~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~---~~  354 (560)
                      |-+-|.+.++..|..|+..|..+... +.  .......  ....+.+-+.+.+.+. .++..++.++..++....   ..
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~-~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV-VAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHhhhhhcc
Confidence            55778889999999999999876532 11  1111111  2345566667777775 899999999998875221   11


Q ss_pred             HH--HHHhCCCHHHHHHh-ccC--CccHHHHHHHHHHhhcc-ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          355 RR--SVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGS-VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       355 ~~--~i~~~g~l~~L~~l-l~~--~~~~~~a~~~L~nla~~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      +.  ...-...++.|+.- +.+  +.++..+..++..++.. ....     .+++.+...+.+.++.++..++..|.++.
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            11  11113346666654 555  44677888888777652 1111     13566777888999999999999888875


Q ss_pred             CC--h---hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          429 TS--A---EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       429 ~~--~---~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      ..  .   ..+..+  ..+++.+..++.+.++.||..|..++..+...
T Consensus       168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            32  1   112111  13466788888999999999999999988643

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.85  E-value=0.84  Score=41.99  Aligned_cols=141  Identities=9%  Similarity=0.044  Sum_probs=97.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHH-hhhcCCHHHHHHHHHHHHHhhC--ChhhHHHH
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSM--SAEMARAI  274 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~--~~~~~~~l  274 (560)
                      ++....+.+++..++|..|+..|+.+ .  ..      ...++.+.. +-.+.+..+++.++.++..++.  +++.    
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----  139 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----  139 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence            34444566677789999999988887 2  11      124555655 5556799999999999999864  3432    


Q ss_pred             HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585          275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                          .++.+...+.++++.+|+.|...+..-+..+..+   .+ .-+++.+-.+..+++. .||....+.|..++..+++
T Consensus       140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~-yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSE-YVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHTTCHH
T ss_pred             ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHhhhCHH
Confidence                4577788899999999999998875433211110   11 1245656556666665 8999999999999998887


Q ss_pred             HHHHHH
Q 008585          354 LRRSVV  359 (560)
Q Consensus       354 ~~~~i~  359 (560)
                      .-..++
T Consensus       212 ~V~~~~  217 (240)
T 3l9t_A          212 LVKIEL  217 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544333

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.78  E-value=0.38  Score=44.69  Aligned_cols=137  Identities=17%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHHHHHhCChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh--h-hHHHh---------
Q 008585          413 SLGAQQAAASALCRVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--N-CREVK---------  479 (560)
Q Consensus       413 ~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~--~-~~~~~---------  479 (560)
                      +...+..+..+|..+..+......+.. .+.+..|...+.++++.++..+.+.|..++..+.  + ...++         
T Consensus        67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~  146 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  146 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence            467788899999999888666555544 4688999999999999999999999988885433  3 22222         


Q ss_pred             hhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585          480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE  549 (560)
Q Consensus       480 ~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~  549 (560)
                      .+..-...++..+..+.....+..++..+..+..++       ..|..+...|..+.+.+|-..++++-.+-++..+
T Consensus       147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~fe  223 (233)
T 2f31_A          147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD  223 (233)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHHH
Confidence            223345678888876533334545555555555433       3677888999999999999888887776666554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.59  E-value=1.8  Score=49.69  Aligned_cols=294  Identities=13%  Similarity=0.092  Sum_probs=149.2

Q ss_pred             cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCC--ch----HHHHHh--
Q 008585          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG--SC----ENWLVS--  235 (560)
Q Consensus       165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~--~~----~~~l~~--  235 (560)
                      .++.+.+..++.++......-+-+  .+.+...++.+. .++.  +++++..|+.+|..+....  +.    ...+..  
T Consensus       206 ~~~~~~~~~aL~~l~~~l~wi~~~--~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          206 GSSSSLIVATLESLLRYLHWIPYR--YIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSCTH--HHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhCCHH--HHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            345677888888888876644422  244455666666 3442  6899999999999998652  21    111111  


Q ss_pred             CCCHHHHHH-h----------h---hcCCHHHHHHHHHHHHHhhCC--------hhhHHHHHhCCChHHHHHHhccCChH
Q 008585          236 EGVLPPLIR-L----------V---ESGSTVGKEKATISLQRLSMS--------AEMARAIVGHGGVRPLIEICQTGDSV  293 (560)
Q Consensus       236 ~g~i~~Lv~-l----------L---~~~~~~~~~~a~~~L~~La~~--------~~~~~~l~~~g~i~~Lv~ll~~~~~~  293 (560)
                      .+.+..+.. +          .   .+.+.+.....+..+..+...        ++....+  ...++.++.....++.+
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~  359 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERE  359 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHH
Confidence            111221111 1          1   112333334444444333211        1111111  12345555655666777


Q ss_pred             HHHHHHHHHHHhcC----CchhHHHHHh--cCcHHHHHHHhhcCC------------------ch---hHHHHHHHHHHH
Q 008585          294 SQAAAACTLKNISA----VPEVRQMLAE--EGIVSVMIKLLDCGI------------------LL---GSKEYAAECLQN  346 (560)
Q Consensus       294 ~~~~a~~aL~nLa~----~~~~~~~i~e--~g~v~~L~~lL~~~~------------------~~---~v~~~a~~~L~~  346 (560)
                      +...++..+..++.    .+..+..+..  ...++.++..+..++                  +.   ..+..+..+|..
T Consensus       360 v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~  439 (1049)
T 3m1i_C          360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY  439 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHH
Confidence            77777766666654    2211111111  123444444432110                  00   123345667776


Q ss_pred             HccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhccccH--HHHHhCCcHHHHHHHHhc-----CCHH
Q 008585          347 LTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKA-----GSLG  415 (560)
Q Consensus       347 La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~~~~--~~l~~~~~i~~Lv~lL~~-----~~~~  415 (560)
                      ++...+..--.+    ..+.+-+.+.+    ...++.++.+++.++.....  +.-.-..+++.|..+...     +.+.
T Consensus       440 l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~  515 (1049)
T 3m1i_C          440 LTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV  515 (1049)
T ss_dssp             HHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred             HHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence            664322110001    12333333432    23578999999999862111  111112233334433221     2244


Q ss_pred             HHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585          416 AQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (560)
Q Consensus       416 v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~  470 (560)
                      ++..++++++.++.. ..+.+.+  ...++.+++.+.+.++.++..|+.++.+++.
T Consensus       516 v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          516 VASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             HHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            555688888887743 1222222  2457778888888889999999999999985

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.46  E-value=0.8  Score=45.94  Aligned_cols=137  Identities=17%  Similarity=0.153  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHHHhCChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh--h-hHHHh---------
Q 008585          413 SLGAQQAAASALCRVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--N-CREVK---------  479 (560)
Q Consensus       413 ~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~--~-~~~~~---------  479 (560)
                      +...+..++.+|..+..+......+.. ..++..|...+.+.++.++..+.+.|..+|..+.  + ...++         
T Consensus       133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~  212 (383)
T 3eg5_B          133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  212 (383)
T ss_dssp             CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence            457888999999999888666555554 4689999999999999999999999999885442  3 33322         


Q ss_pred             hhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585          480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE  549 (560)
Q Consensus       480 ~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~  549 (560)
                      .+..-...++..|+.......+.+++..+..+..++       ..|..+...|..+.+.+|-..++++-.+-++..+
T Consensus       213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi~~fe  289 (383)
T 3eg5_B          213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD  289 (383)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHHHHHHH
Confidence            223446778888887533344545555555555432       3677888999999999998887766555444443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=94.45  E-value=0.29  Score=55.73  Aligned_cols=295  Identities=13%  Similarity=0.019  Sum_probs=154.7

Q ss_pred             cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHHHhCCCHHH
Q 008585          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPP  241 (560)
Q Consensus       165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~  241 (560)
                      ..+++....++.++......-+-  ..+++...++.+.++|..  +++++.|+.+|..+.....   .+..++..=.+..
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            36778888999999999875442  245555678888888865  7999999999999987543   3333333211222


Q ss_pred             HHHhhh--cCCHHHHHHHHHHHHHhh-------CCh-----hhHHHHH--hCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585          242 LIRLVE--SGSTVGKEKATISLQRLS-------MSA-----EMARAIV--GHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (560)
Q Consensus       242 Lv~lL~--~~~~~~~~~a~~~L~~La-------~~~-----~~~~~l~--~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (560)
                      .+..+.  .++.+..+..++.+..++       ..+     +.+....  -.+.++.++.++.+++.++-..++.-+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            222222  356666555444443331       111     1111111  136778888888888877765555544433


Q ss_pred             cCCc-------hhHHHHHh--cCcHHHHHHHhhcC-----------Cc----hhHHHHHHHHHHHHccCChhHHHH-HHh
Q 008585          306 SAVP-------EVRQMLAE--EGIVSVMIKLLDCG-----------IL----LGSKEYAAECLQNLTASNENLRRS-VVS  360 (560)
Q Consensus       306 a~~~-------~~~~~i~e--~g~v~~L~~lL~~~-----------~~----~~v~~~a~~~L~~La~~~~~~~~~-i~~  360 (560)
                      ....       .....+.+  ...++.++.-+.-+           ++    .+.|......+..++.-.+...-. +.+
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~  439 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS  439 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            3110       01111111  11233333333211           11    023333332233333222221111 000


Q ss_pred             CCCHHH-HHHhccC-----CccHHHHHHHHHHhhc--cccHHHH-----HhCCcHHHHHHHHh-----cCCHHHHHHHHH
Q 008585          361 EGGIRS-LLAYLDG-----PLPQESAVGALRNLVG--SVSQEVL-----ISLGFFPRLVHVLK-----AGSLGAQQAAAS  422 (560)
Q Consensus       361 ~g~l~~-L~~ll~~-----~~~~~~a~~~L~nla~--~~~~~~l-----~~~~~i~~Lv~lL~-----~~~~~v~~~A~~  422 (560)
                        .+.. +-+.+.+     -...|.++.+|++++.  ......+     ....+++.+..+++     ...+.|+..+++
T Consensus       440 --~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          440 --AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             --HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             --HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence              1111 2222321     2347899999999987  2111000     00123455555655     466999999999


Q ss_pred             HHHHHhCChhHHHHHHhcCCHHHHHHHH------ccCCHHHHHHHHHHHHHhcC
Q 008585          423 ALCRVCTSAEMKKLVGEAGCTPLLIKLL------EAKPNSVREVAAQAISSLVT  470 (560)
Q Consensus       423 aL~~La~~~~~~~~i~~~g~i~~Lv~ll------~s~~~~v~~~A~~aL~~L~~  470 (560)
                      ++++.+..-..     ....++.++..+      .+++..++..|+.++.+++.
T Consensus       518 ~l~rys~~~~~-----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          518 ILVRYASFFDY-----ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             HHHHTGGGGGT-----CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-----CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence            99998865211     113455555544      34667899999999999983

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=94.35  E-value=0.029  Score=52.72  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             ccCCHHHHHHHHH-----HHHHHHhhChH-HHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCC
Q 008585          164 QIGHLEAKHKALD-----SLVEAMKEDEK-NVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG  237 (560)
Q Consensus       164 ~~~~~~~~~~A~~-----~L~~L~~~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g  237 (560)
                      +..+++++..++.     .|..++.+.+. .+...+..-..+.|..+++++++.+|..++..+   .             
T Consensus        60 ~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l---~-------------  123 (244)
T 1lrv_A           60 ADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL---P-------------  123 (244)
T ss_dssp             TCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS---C-------------
T ss_pred             cCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhC---C-------------
Confidence            4445555555553     23333333222 222333322345677788888888888887632   1             


Q ss_pred             CHHHHHHhhhcCCHHHHHHHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATI  259 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~  259 (560)
                       .+.+..++++.++.+|..++.
T Consensus       124 -~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          124 -LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             -TGGGGGGTTCSSHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCHHHHHHHHH
Confidence             122444456666666666554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.28  E-value=0.53  Score=45.56  Aligned_cols=164  Identities=14%  Similarity=0.087  Sum_probs=97.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHH----HHHhhhc-CCHHHHHHHHHHHHHhhCChhhHH
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPP----LIRLVES-GSTVGKEKATISLQRLSMSAEMAR  272 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~----Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~  272 (560)
                      +..+.++++-+ .+.+--++..++.+..++.....+.+.+.-..    +...+.+ ..+..+..++++++|+..++..+.
T Consensus       105 l~~l~kil~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAINCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHHTSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHHcCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            45556665433 23444555666666655544444443322233    3333432 356678899999999998888777


Q ss_pred             HHHhC--CChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585          273 AIVGH--GGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (560)
Q Consensus       273 ~l~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~  349 (560)
                      .+...  .+++.+...+.+.+..++..++..+.|++... ..+..=....++..+..+++...+.+..+.++.+|+++..
T Consensus       184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~  263 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS  263 (304)
T ss_dssp             HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence            66542  23333444444568899999999999998521 0000000122455555666655555899999999999998


Q ss_pred             CChhHHHHHHhCC
Q 008585          350 SNENLRRSVVSEG  362 (560)
Q Consensus       350 ~~~~~~~~i~~~g  362 (560)
                      .+...++..-..|
T Consensus       264 ~~~~~~~lak~l~  276 (304)
T 3ebb_A          264 DDSNAVQLAKSLG  276 (304)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             CChhHHHHHHHcC
Confidence            7666544333333

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.19  E-value=3.3  Score=47.49  Aligned_cols=217  Identities=12%  Similarity=0.106  Sum_probs=132.1

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC-----c
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAESG-----S  228 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~~-----~  228 (560)
                      .+..++..+.+++.+.+.+|-..|.++-. ++         +....+..+|. +.++.+|..|+..|.+.....     +
T Consensus        17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~   86 (1049)
T 3m1i_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN   86 (1049)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence            35566666667777778778777766633 33         34555666664 456899999999999876431     2


Q ss_pred             -hHHHHHhCCCHHHHHHhhhcC-----CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585          229 -CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (560)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (560)
                       .+..+ +...+..+...-.+.     +..++...+.++..++.. -+..|    .+.++.|+..++ .++..+..++.+
T Consensus        87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~~~~~~l~~  160 (1049)
T 3m1i_C           87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVNVCENNMIV  160 (1049)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChHHHHHHHHH
Confidence             33332 222333333322111     366788888888888664 12222    355688888886 566666777777


Q ss_pred             HHHhcCC-----c----hh-----HHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHH
Q 008585          302 LKNISAV-----P----EV-----RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR  365 (560)
Q Consensus       302 L~nLa~~-----~----~~-----~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~  365 (560)
                      |..++..     .    ..     +..+.+  ..++..+..++.+.....++..++.++.....--+.  ..+.+...++
T Consensus       161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~  238 (1049)
T 3m1i_C          161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILE  238 (1049)
T ss_dssp             HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHH
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHH
Confidence            7777521     0    01     122332  223444555565544347889999999887653332  2355566666


Q ss_pred             HHH-HhccCCccHHHHHHHHHHhhc
Q 008585          366 SLL-AYLDGPLPQESAVGALRNLVG  389 (560)
Q Consensus       366 ~L~-~ll~~~~~~~~a~~~L~nla~  389 (560)
                      .+. .++.++..+..|+.+|..+..
T Consensus       239 ~l~~~~l~~~~~~~~a~~~L~~i~~  263 (1049)
T 3m1i_C          239 LLSTKFMTSPDTRAITLKCLTEVSN  263 (1049)
T ss_dssp             HHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHh
Confidence            666 345567888999999998886

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.58  E-value=5.3  Score=40.65  Aligned_cols=159  Identities=14%  Similarity=0.145  Sum_probs=99.0

Q ss_pred             cCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHH
Q 008585          248 SGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK  326 (560)
Q Consensus       248 ~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~  326 (560)
                      .++...+..|+..+.+...+ |+....-     +..++++|.+.+..+|..|...|..+|.+ ++..+     +..+|++
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q  107 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ  107 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence            35788999999999999765 6655432     38999999999999999999999999987 55443     4678899


Q ss_pred             HhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc-cC-CccHHHHHHHHHHhhcc---ccHHHHHhCCc
Q 008585          327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-DG-PLPQESAVGALRNLVGS---VSQEVLISLGF  401 (560)
Q Consensus       327 lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll-~~-~~~~~~a~~~L~nla~~---~~~~~l~~~~~  401 (560)
                      +|..++. .-...+-.+|..+...++...        +..++.-+ .+ +.+|+.++.+|..=..+   +....-.+.-+
T Consensus       108 lLqtdd~-~E~~~V~~sL~sllk~Dpk~t--------l~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          108 LLQTDDS-AEFNLVNNALLSIFKMDAKGT--------LGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HTTCCCH-HHHHHHHHHHHHHHHHCHHHH--------HHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHhccch-HHHHHHHHHHHHHHhcChHHH--------HHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            9997775 444455555665655444321        33333333 22 55788888887665541   11111122334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008585          402 FPRLVHVLKAGSLGAQQAAASALCR  426 (560)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~  426 (560)
                      +..+.+.|+.-...--......|..
T Consensus       179 ~~~ikK~L~DVT~~EF~L~m~lL~~  203 (507)
T 3u0r_A          179 LTESKKVLEDVTGEEFVLFMKILSG  203 (507)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHh
Confidence            5555566644333322333344433

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.28  E-value=1.3  Score=42.70  Aligned_cols=173  Identities=14%  Similarity=0.128  Sum_probs=101.6

Q ss_pred             HHHHHHhccC-CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHH----HHHHhc-CCHHHHHHHHHHHHHHhCChhHHHH
Q 008585          364 IRSLLAYLDG-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRL----VHVLKA-GSLGAQQAAASALCRVCTSAEMKKL  436 (560)
Q Consensus       364 l~~L~~ll~~-~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~L----v~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~  436 (560)
                      +..+.+++.= .+.+.+++..++.++. +.....+.+.+.-..+    ...+.. ..+..+..++++++|+..++..+..
T Consensus       105 l~~l~kil~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~  184 (304)
T 3ebb_A          105 LQILWKAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKL  184 (304)
T ss_dssp             HHHHHHHHTSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHH
T ss_pred             HHHHHHHHcCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHH
Confidence            4455555521 4567888898888877 3333333333222333    333332 3577799999999999999888887


Q ss_pred             HHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585          437 VGEA--GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (560)
Q Consensus       437 i~~~--g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~  514 (560)
                      +...  ..++.+...+.+.+..+|..++..+.|++....+....-........+.++++...+.+...-++.+|.+|...
T Consensus       185 l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          185 MMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            7653  23444444445668889999999999998321110000000112344556665544445565677777777654


Q ss_pred             h-hhHHHHHHcChhHHHHHhhcc
Q 008585          515 K-KCKKLMISYGAIGYLKKLSEM  536 (560)
Q Consensus       515 ~-~~r~~i~~~g~i~~L~~L~~~  536 (560)
                      . ..+.....-|.-..+.++.+.
T Consensus       265 ~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          265 DSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             CHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             ChhHHHHHHHcCHHHHHHHHHhC
Confidence            4 344444445666666666655

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=93.02  E-value=1.6  Score=42.35  Aligned_cols=114  Identities=15%  Similarity=0.146  Sum_probs=91.0

Q ss_pred             HHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc-CCchh
Q 008585          257 ATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC-GILLG  335 (560)
Q Consensus       257 a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~-~~~~~  335 (560)
                      +...|.-|-.+.+.-.-++..+|+..+..+..-++.++.+..+..|..++.....+..=. ...+|.++..+.- +++ +
T Consensus       263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eD-d  340 (619)
T 3c2g_A          263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDD-E  340 (619)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCH-H
T ss_pred             HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCc-c
Confidence            334444445556667789999999999999999999999999999999987654442211 4578888888774 554 8


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585          336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD  372 (560)
Q Consensus       336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~  372 (560)
                      +.+...+.|.|...+....++..+..|++..|-..+.
T Consensus       341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            9999999999999998889999999999999888874

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.72  E-value=1.8  Score=43.41  Aligned_cols=137  Identities=16%  Similarity=0.144  Sum_probs=95.7

Q ss_pred             CHHHHHHHHHHHHHHhCChhHHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh--h-hHHHh---------
Q 008585          413 SLGAQQAAASALCRVCTSAEMKKLVG-EAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--N-CREVK---------  479 (560)
Q Consensus       413 ~~~v~~~A~~aL~~La~~~~~~~~i~-~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~--~-~~~~~---------  479 (560)
                      +...+..++.+|..+..+......+. ..+++..|...+.+.++.++..+++.|..+|..+.  + ...++         
T Consensus        71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~  150 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  150 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence            46778889999999988765555444 44788999999999999999999999988885433  3 22222         


Q ss_pred             hhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585          480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE  549 (560)
Q Consensus       480 ~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~  549 (560)
                      .+..-...++..+..+.....+.+++..+..+..++       ..|..|...|..+.+.+|-..++++-..-++..+
T Consensus       151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe  227 (386)
T 2bnx_A          151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD  227 (386)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHH
Confidence            223345668888876543345555556666555433       3778889999999999998888876655555443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=92.55  E-value=6.6  Score=44.57  Aligned_cols=286  Identities=12%  Similarity=0.083  Sum_probs=159.5

Q ss_pred             CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhc--CCc-h--HHHHHhCCC
Q 008585          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT---SPRIREKTVTVICSLAE--SGS-C--ENWLVSEGV  238 (560)
Q Consensus       167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~--~~~-~--~~~l~~~g~  238 (560)
                      +++.|.+|-..|.++=. ++         ++......+|..+   ++.+|-.|+.+|.+...  .++ +  ....++..+
T Consensus        21 d~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l   90 (980)
T 3ibv_A           21 GPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV   90 (980)
T ss_dssp             CHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence            67888888877766643 33         3556666777553   68999999988887654  222 0  222223233


Q ss_pred             HHHHHHhhh-cCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHHhcC----C---
Q 008585          239 LPPLIRLVE-SGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISA----V---  308 (560)
Q Consensus       239 i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~----~---  308 (560)
                      +..+.+.-. .++..++.+.+.++..+.... +..|    .+.++.++.++..+++ ......+.+|..++.    .   
T Consensus        91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~  166 (980)
T 3ibv_A           91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVL  166 (980)
T ss_dssp             HHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccc
Confidence            444433110 246678888898888886531 1111    3445777777766444 334445555553321    0   


Q ss_pred             --c-------hhHHHHHhc---CcHHHHHHHhhc----CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585          309 --P-------EVRQMLAEE---GIVSVMIKLLDC----GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD  372 (560)
Q Consensus       309 --~-------~~~~~i~e~---g~v~~L~~lL~~----~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~  372 (560)
                        .       +.++.+.+.   .+++....++..    .++ .++..++.+|.....--+  -..+++.+.++.+.+++.
T Consensus       167 ~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~-~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~  243 (980)
T 3ibv_A          167 KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNY-GTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQ  243 (980)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTT
T ss_pred             cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcC
Confidence              0       112233321   124444444433    444 788889999988876333  235666677888999998


Q ss_pred             CCccHHHHHHHHHHhhc-cc---cHHHHHhCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhC-------Ch-----hHH
Q 008585          373 GPLPQESAVGALRNLVG-SV---SQEVLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCT-------SA-----EMK  434 (560)
Q Consensus       373 ~~~~~~~a~~~L~nla~-~~---~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~La~-------~~-----~~~  434 (560)
                      ++..+..|+.+|..+.. ..   ....++..=.+...+..+.  .+|.+..+..++.+..++.       .+     +.+
T Consensus       244 ~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~  323 (980)
T 3ibv_A          244 IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELK  323 (980)
T ss_dssp             SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhh
Confidence            89999999999999987 22   2222221101122222222  3566665545544444331       11     111


Q ss_pred             HHHH--hcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          435 KLVG--EAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       435 ~~i~--~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ....  -.+.++.++..+..++.++-..+...+..+.
T Consensus       324 ~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l  360 (980)
T 3ibv_A          324 ENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL  360 (980)
T ss_dssp             HHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence            1110  1257888888887777777766666655554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.13  E-value=3.6  Score=38.70  Aligned_cols=174  Identities=14%  Similarity=0.061  Sum_probs=107.2

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh----hcCCchhHHHHHHHHHHHHcc----CCh
Q 008585          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL----DCGILLGSKEYAAECLQNLTA----SNE  352 (560)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL----~~~~~~~v~~~a~~~L~~La~----~~~  352 (560)
                      +.+...+-+.+..-+..++..|.....  .+...+..  .+..+++.+    .+.+. .+...++.+|..+..    .+.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~-~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNP-AALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhccc
Confidence            334444445566666667666665432  11222221  233333332    24443 677788888777643    100


Q ss_pred             hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (560)
Q Consensus       353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~  430 (560)
                      ....+- -.-.+|.|+.-+-+  ..+|+.+-.++..++.-...     ..+.+.++.-+++.+..++..++..+..+-..
T Consensus       124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-----LKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            000000 01137788887766  34788888887777651111     22577888888999999999999999988632


Q ss_pred             hhHHHHHHhcCCH---HHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          431 AEMKKLVGEAGCT---PLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       431 ~~~~~~i~~~g~i---~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ....    ....+   +.+.+++.+.+..||..|..++..+.
T Consensus       198 ~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          198 AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            1111    23468   99999999999999999999999775

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=91.77  E-value=1.2  Score=50.96  Aligned_cols=135  Identities=13%  Similarity=-0.008  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhc-----CCHHHHHHHHHHHHHhhC----ChhhHHHHHhC
Q 008585          208 TSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES-----GSTVGKEKATISLQRLSM----SAEMARAIVGH  277 (560)
Q Consensus       208 ~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~La~----~~~~~~~l~~~  277 (560)
                      .++..+|.++.+++.+++... ....-.-..+++.|+.++..     ....++..+++++++.+.    +++.-.     
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence            469999999999999997654 21211112367888888764     233455667788888754    222211     


Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh------cCcHHHHHH----HhhcCCchhHHHHHHHHHHHH
Q 008585          278 GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE------EGIVSVMIK----LLDCGILLGSKEYAAECLQNL  347 (560)
Q Consensus       278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e------~g~v~~L~~----lL~~~~~~~v~~~a~~~L~~L  347 (560)
                      ..+..|++.+.+..|.++.+|++++.+++.  +++..+..      ...++.++.    ....-+. ..+.....+++.+
T Consensus       540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~-~~~~~lyeai~~v  616 (1023)
T 4hat_C          540 TVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP-QQVHTFYKACGII  616 (1023)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence            223556666666778999999999999996  56666642      223444433    3333333 5567777888887


Q ss_pred             ccC
Q 008585          348 TAS  350 (560)
Q Consensus       348 a~~  350 (560)
                      ...
T Consensus       617 i~~  619 (1023)
T 4hat_C          617 ISE  619 (1023)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            764

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=91.75  E-value=3.8  Score=37.83  Aligned_cols=148  Identities=17%  Similarity=0.201  Sum_probs=95.4

Q ss_pred             hhHHHHHhcCcHHHHHHHhhc----C------CchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccH
Q 008585          310 EVRQMLAEEGIVSVMIKLLDC----G------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQ  377 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~----~------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~  377 (560)
                      ...+.| ..+++..|+.++..    +      .+...+..++.||..+.....+....+....++..+...+++  +.++
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r  113 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM  113 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence            444555 45677777777753    1      123568889999999998766655444456788889888877  4567


Q ss_pred             HHHHHHHHHhhc-c--cc-HHHHH----------hCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCCh-------hHHH
Q 008585          378 ESAVGALRNLVG-S--VS-QEVLI----------SLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSA-------EMKK  435 (560)
Q Consensus       378 ~~a~~~L~nla~-~--~~-~~~l~----------~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~~-------~~~~  435 (560)
                      ..++..|..+|. +  .+ ...+.          +..-...+++.++. .+.+.+..+...+-.+..++       ..|.
T Consensus       114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~  193 (233)
T 2f31_A          114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS  193 (233)
T ss_dssp             HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            788888888887 3  25 44431          22345667777774 45677777776666666542       3456


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHH
Q 008585          436 LVGEAGCTPLLIKLLEAKPNSVR  458 (560)
Q Consensus       436 ~i~~~g~i~~Lv~ll~s~~~~v~  458 (560)
                      .+...|..+.+-++-...++++.
T Consensus       194 ef~~~Gl~~il~~l~~~~~~~L~  216 (233)
T 2f31_A          194 ELMRLGLHQVLQELREIENEDMK  216 (233)
T ss_dssp             HHHHTTHHHHHHHHHHCCCHHHH
T ss_pred             HHHHCChHHHHHHHhccCCHHHH
Confidence            66677865555554444555543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=90.89  E-value=8.1  Score=44.15  Aligned_cols=218  Identities=11%  Similarity=0.067  Sum_probs=134.4

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-----c
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESG-----S  228 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~-----~  228 (560)
                      .+..++..+..++.+.|.+|-..|.++- .++         ++...+..+|.. .++.+|-.|+..|.+.....     +
T Consensus        29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~   98 (1073)
T 3gjx_A           29 LLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR   98 (1073)
T ss_dssp             HHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence            4666777777778887877777775543 333         344445555644 46899999999999886632     2


Q ss_pred             hHHHHHhCCCHHHHHHhhhc-----CCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHH
Q 008585          229 CENWLVSEGVLPPLIRLVES-----GSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL  302 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL  302 (560)
                      ....-++..++..+.+.-.+     .++.++.+.+.++..++.. .+..|    .+.++.++..++. ++......+.+|
T Consensus        99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~-~~~~~~~~L~IL  173 (1073)
T 3gjx_A           99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRT-SESLCQNNMVIL  173 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            22222333345555444322     2466677888888888653 11112    3455777777754 445556677777


Q ss_pred             HHhcCC--c------------hhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585          303 KNISAV--P------------EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (560)
Q Consensus       303 ~nLa~~--~------------~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (560)
                      ..|+..  +            ..+..+.+  ..++..+..++.......+...++.+|.....--+-  ..+++.+.++.
T Consensus       174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~  251 (1073)
T 3gjx_A          174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLIST  251 (1073)
T ss_dssp             HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHH
T ss_pred             HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHH
Confidence            777531  0            11223333  224444445555544446778888999988873332  35778888888


Q ss_pred             H-HHhccCCccHHHHHHHHHHhhc
Q 008585          367 L-LAYLDGPLPQESAVGALRNLVG  389 (560)
Q Consensus       367 L-~~ll~~~~~~~~a~~~L~nla~  389 (560)
                      + ..++.++..+..|+.+|..+..
T Consensus       252 L~~~~L~~~~~r~aA~dcL~eIv~  275 (1073)
T 3gjx_A          252 LIYKFLNVPMFRNVSLKCLTEIAG  275 (1073)
T ss_dssp             HHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHh
Confidence            7 5888888999999999999886

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=90.39  E-value=5.6  Score=36.50  Aligned_cols=139  Identities=12%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             HHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhc--CCchHH
Q 008585          156 TRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAE--SGSCEN  231 (560)
Q Consensus       156 i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~--~~~~~~  231 (560)
                      +..+...|. ....++|.-|+..|..+ ...         ...++.+.. +-...+..+++.++.++..++.  +++   
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            445555554 44467788888866665 211         123455555 4455679999999999999874  332   


Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC---hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS---AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-  307 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-  307 (560)
                           ..++.+....++++..+|..|...+.--+..   ..+...+     ++.|-.+..+++.-+|...++.|..++. 
T Consensus       139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~l-----l~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEA-----IRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHH-----HHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHH-----HHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence                 1578888999999999999988886432211   1112221     2445555567888999999999999997 


Q ss_pred             CchhHHHHHh
Q 008585          308 VPEVRQMLAE  317 (560)
Q Consensus       308 ~~~~~~~i~e  317 (560)
                      +|+.-..+++
T Consensus       209 ~Pd~V~~~~~  218 (240)
T 3l9t_A          209 FPDLVKIELK  218 (240)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5565555544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.85  E-value=3.6  Score=46.94  Aligned_cols=218  Identities=12%  Similarity=0.112  Sum_probs=135.3

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC-----Cc
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAES-----GS  228 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~-----~~  228 (560)
                      .+..++..+.+++.+.|.+|-..|.++-+ ++         ++...+..+|. +.++.+|-.|+..|.+....     ++
T Consensus        17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~   86 (1023)
T 4hat_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN   86 (1023)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            46667777777777777777777766543 33         34555556664 45689999999999887653     22


Q ss_pred             hHHHHHhCCCHHHHHHhhhcC-----CHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHH
Q 008585          229 CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL  302 (560)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL  302 (560)
                      .....++..++..+.+.-.++     ...++.+.+.++..++... +..|    .+.++.++..+++ ++......+..|
T Consensus        87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W----p~~l~dL~~~l~~-~~~~~~~~L~iL  161 (1023)
T 4hat_C           87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSSS-SVNVCENNMIVL  161 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc----hHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            222333334455555443222     3556677888888886532 1112    3456778888764 444556666666


Q ss_pred             HHhcCC---------c-----hhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585          303 KNISAV---------P-----EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (560)
Q Consensus       303 ~nLa~~---------~-----~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (560)
                      ..|+..         .     ..+..+.+  ..++..+..++.+....++...++.++.....--+  -..+++.+.++.
T Consensus       162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~  239 (1023)
T 4hat_C          162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILEL  239 (1023)
T ss_dssp             HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHH
Confidence            665321         1     11222233  23455555556554333788889999998876322  245677888899


Q ss_pred             HH-HhccCCccHHHHHHHHHHhhc
Q 008585          367 LL-AYLDGPLPQESAVGALRNLVG  389 (560)
Q Consensus       367 L~-~ll~~~~~~~~a~~~L~nla~  389 (560)
                      ++ .++.++..+..|+.+|..+..
T Consensus       240 l~~~~L~~~~~r~~A~ecL~eIv~  263 (1023)
T 4hat_C          240 LSTKFMTSPDTRAITLKCLTEVSN  263 (1023)
T ss_dssp             HHTHHHHSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHc
Confidence            99 888888899999999999886

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=89.08  E-value=19  Score=35.78  Aligned_cols=172  Identities=13%  Similarity=0.140  Sum_probs=110.6

Q ss_pred             HHHHHccCCH-HHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhc
Q 008585          159 LLARLQIGHL-EAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAE  225 (560)
Q Consensus       159 Ll~~L~~~~~-~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~  225 (560)
                      .+..|+++.. +...+.+..|..-+..++ .....+. .+|+..|+.+|..           .+...+..++.+|..+..
T Consensus        71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN  149 (383)
T 3eg5_B           71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN  149 (383)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence            3445555432 223456677776666554 4455665 6788889888852           135778889999999988


Q ss_pred             CCchHHHHH-hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh--h-HHHHH----------hCCChHHHHHHhcc-C
Q 008585          226 SGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAIV----------GHGGVRPLIEICQT-G  290 (560)
Q Consensus       226 ~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~-~~~l~----------~~g~i~~Lv~ll~~-~  290 (560)
                      +......+. ....+..|+..|.+.++.++..+...|..++..++  + ...+.          +..-...++..++. .
T Consensus       150 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~  229 (383)
T 3eg5_B          150 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  229 (383)
T ss_dssp             SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred             chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccC
Confidence            776545444 55689999999999999999999999999887532  3 32222          24557778888876 4


Q ss_pred             ChHHHHHHHHHHHHhcCC---ch----hHHHHHhcCcHHHHHHHhhcCC
Q 008585          291 DSVSQAAAACTLKNISAV---PE----VRQMLAEEGIVSVMIKLLDCGI  332 (560)
Q Consensus       291 ~~~~~~~a~~aL~nLa~~---~~----~~~~i~e~g~v~~L~~lL~~~~  332 (560)
                      +.+.+..++..+-.+...   -+    .|..+...|..+.+-+ ++..+
T Consensus       230 ~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~  277 (383)
T 3eg5_B          230 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIE  277 (383)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSC
T ss_pred             cHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCC
Confidence            556655555544444332   23    3445556777666655 55443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=88.13  E-value=13  Score=42.50  Aligned_cols=162  Identities=15%  Similarity=0.094  Sum_probs=94.6

Q ss_pred             HHHHHHhcc----CChHHHHHHHHHHHHhc----CCchhHH-HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC
Q 008585          281 RPLIEICQT----GDSVSQAAAACTLKNIS----AVPEVRQ-MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN  351 (560)
Q Consensus       281 ~~Lv~ll~~----~~~~~~~~a~~aL~nLa----~~~~~~~-~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~  351 (560)
                      ..+..++.+    .++.++..+.-+++.|.    .+...|. .++ ..+...+.+.+..++. +-+..++.+|+|+... 
T Consensus       394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~-~~~~~~LkaLGN~g~p-  470 (1056)
T 1lsh_A          394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKE-EEIVLALKALGNAGQP-  470 (1056)
T ss_dssp             HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTCG-
T ss_pred             HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCCh-HHHHHHHHHhhccCCh-
Confidence            555566654    46677777777776664    2221111 110 1122334444555654 6778899999999752 


Q ss_pred             hhHHHHHHhCCCHHHHHHhccC---------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHh--cCCHHHHHHH
Q 008585          352 ENLRRSVVSEGGIRSLLAYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK--AGSLGAQQAA  420 (560)
Q Consensus       352 ~~~~~~i~~~g~l~~L~~ll~~---------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~A  420 (560)
                       .         .++.+.+++..         ..++..|+.+|+.++... ++     .+-+.++.+..  ..++++|..|
T Consensus       471 -~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~-----~v~~il~~i~~n~~e~~EvRiaA  534 (1056)
T 1lsh_A          471 -N---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR-----KVQEIVLPIFLNVAIKSELRIRS  534 (1056)
T ss_dssp             -G---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH-----HHHHHHHHHHHCTTSCHHHHHHH
T ss_pred             -h---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH-----HHHHHHHHHhcCCCCChHHHHHH
Confidence             2         26667777632         135677999999887521 11     13455667774  3579999999


Q ss_pred             HHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcC
Q 008585          421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVT  470 (560)
Q Consensus       421 ~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~  470 (560)
                      +..|..-.-+.         ..+..+...+.. .+..|.......|.+++.
T Consensus       535 ~~~Lm~t~P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          535 CIVFFESKPSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             HHHHHHTCCCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCcCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence            88886543332         123344444443 566677777777777773

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=86.95  E-value=4.4  Score=38.65  Aligned_cols=146  Identities=14%  Similarity=0.175  Sum_probs=93.5

Q ss_pred             hHHHHHHHHccC------CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhcC
Q 008585          155 NTRELLARLQIG------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL--TATSPRIREKTVTVICSLAES  226 (560)
Q Consensus       155 ~i~~Ll~~L~~~------~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~v~~~A~~~L~~La~~  226 (560)
                      .+......+++|      +.+.-..|+..|.+++. +-++...|++.. ...|-.++  ....+.+++.|+++++.--++
T Consensus        23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence            455566666777      44557788999999886 455555555422 33343333  344578999999999998887


Q ss_pred             Cc-hHHHHHh--CCCHHHHHHhhhc-------CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--ChHH
Q 008585          227 GS-CENWLVS--EGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVS  294 (560)
Q Consensus       227 ~~-~~~~l~~--~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~  294 (560)
                      .+ ....+.+  ...+..++.-|..       ....++..-+.+|..|..++.   .| ...++..|.+++...  ++.+
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~  176 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQL  176 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHH
Confidence            75 4444433  2344444443433       244666777888888877752   12 256778888888777  8888


Q ss_pred             HHHHHHHHHHhc
Q 008585          295 QAAAACTLKNIS  306 (560)
Q Consensus       295 ~~~a~~aL~nLa  306 (560)
                      +..++..+..+-
T Consensus       177 k~Kvl~li~d~f  188 (315)
T 3qml_C          177 QIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            888877776553

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=85.78  E-value=8.7  Score=37.28  Aligned_cols=126  Identities=13%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             HHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhc-CCHHHH
Q 008585          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES-GSTVGK  254 (560)
Q Consensus       177 ~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~-~~~~~~  254 (560)
                      -|.+++.++.....-++..+|+..+...+.-++.++.....+.|...+.... +...+  .+.+|.+++.++- ++.++.
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence            3445555666677788899999999999999999999999999999887654 22221  2357888887764 577888


Q ss_pred             HHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhccC-------ChHHHHHHHHHHHH
Q 008585          255 EKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKN  304 (560)
Q Consensus       255 ~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~n  304 (560)
                      ......|++...+.. .++.-...|+++.|...+...       +..-+..+|+.++|
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN  400 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN  400 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence            899999999977644 455555789999888877532       22344556665554

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=84.19  E-value=63  Score=36.83  Aligned_cols=196  Identities=11%  Similarity=0.070  Sum_probs=114.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHHHhCCCHHHHHHhhhc----CCHHHHHHHHHHHHHhh----CCh
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLS----MSA  268 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La----~~~  268 (560)
                      +..+.+++.+......+ |+.+|..+... .+..+      .+..+..++++    .++.++..+.-++..|.    .+.
T Consensus       358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~  430 (1056)
T 1lsh_A          358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT  430 (1056)
T ss_dssp             HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence            55666677666533333 33333332221 11222      24555556654    35666776666666553    221


Q ss_pred             hhHHHHHhCCChHH----HHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc------CCchhHHH
Q 008585          269 EMARAIVGHGGVRP----LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC------GILLGSKE  338 (560)
Q Consensus       269 ~~~~~l~~~g~i~~----Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~------~~~~~v~~  338 (560)
                      ..+    ....++.    +.+.+...+..-+..++.+|+|+...          ..++.+.+++..      +.+..++.
T Consensus       431 ~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~  496 (1056)
T 1lsh_A          431 VSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQA  496 (1056)
T ss_dssp             SSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             CCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHH
Confidence            110    1112333    44445567777788999999998762          357777777642      12236788


Q ss_pred             HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc-CC
Q 008585          339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA-GS  413 (560)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~-~~  413 (560)
                      .|+++|..++...+..-        -+.++++..+    +++|..|+..|.... +..       ..+..+...+.. .+
T Consensus       497 aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~-------~~l~~ia~~l~~E~~  560 (1056)
T 1lsh_A          497 EAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSV-------ALVSMVAVRLRREPN  560 (1056)
T ss_dssp             HHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCH-------HHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCH-------HHHHHHHHHHhhCch
Confidence            89999999997655432        2345555533    566777776664332 211       246677777765 57


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 008585          414 LGAQQAAASALCRVCTS  430 (560)
Q Consensus       414 ~~v~~~A~~aL~~La~~  430 (560)
                      ..|.......|.+++.+
T Consensus       561 ~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          561 LQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            88888888888888865

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=84.07  E-value=36  Score=33.85  Aligned_cols=159  Identities=13%  Similarity=0.168  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCCchHHHH-HhCCCH
Q 008585          173 KALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA----T-------SPRIREKTVTVICSLAESGSCENWL-VSEGVL  239 (560)
Q Consensus       173 ~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~----~-------~~~v~~~A~~~L~~La~~~~~~~~l-~~~g~i  239 (560)
                      +.+..|.-.+..++ .....+. .+|+..|+.+|..    .       +...+..++.+|..+..+......+ ...+++
T Consensus        24 ~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           24 SCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred             HHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence            34556655555444 4455554 5778888877742    1       3567888999999998877644444 455689


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhCChh--h-HHHHH----------hCCChHHHHHHhcc-CChHHHHHHHHHHHHh
Q 008585          240 PPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAIV----------GHGGVRPLIEICQT-GDSVSQAAAACTLKNI  305 (560)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~-~~~l~----------~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL  305 (560)
                      ..+...|.+.++.++..+...|..++..++  . ...+.          +..-+..++..+.. .+.+.+..++..+-.+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999988887543  3 32222          23456678887764 4445555555444444


Q ss_pred             cCCc---h----hHHHHHhcCcHHHHHHHhhcCC
Q 008585          306 SAVP---E----VRQMLAEEGIVSVMIKLLDCGI  332 (560)
Q Consensus       306 a~~~---~----~~~~i~e~g~v~~L~~lL~~~~  332 (560)
                      ...+   +    .|..+...|..+.+-++=..++
T Consensus       183 v~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~  216 (386)
T 2bnx_A          183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIEN  216 (386)
T ss_dssp             HTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCC
T ss_pred             HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCC
Confidence            3322   2    3555666777666654433333

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=83.96  E-value=40  Score=34.34  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=90.3

Q ss_pred             ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH
Q 008585          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI  243 (560)
Q Consensus       164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv  243 (560)
                      ..|+...+.-|+.-+..+.+.-|+...     ..+..++.++.+.+..+|.+|++.|-.++.+ +....     +.+.|+
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~  106 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT  106 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence            467788899999999999887775533     4678899999999999999999999999988 54333     478899


Q ss_pred             HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH
Q 008585          244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK  303 (560)
Q Consensus       244 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  303 (560)
                      ++|.++++.-...+-.+|..|-..+. +.      .+..++..+..+++.+|..++.-|.
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dp-k~------tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDA-KG------TLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCH-HH------HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcCh-HH------HHHHHHHHHcccchHHHHHHHHHHH
Confidence            99999988877777777777643221 11      2245555555567777777666554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=83.13  E-value=10  Score=43.31  Aligned_cols=211  Identities=12%  Similarity=0.085  Sum_probs=126.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhC------Chhh
Q 008585          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSM------SAEM  270 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~------~~~~  270 (560)
                      ++.++..+-+++++.|..|-..|..+-.+++...         .+..+|.. .++.+|..|+.+|.+...      +++.
T Consensus        30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~---------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~  100 (1073)
T 3gjx_A           30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWT---------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ  100 (1073)
T ss_dssp             HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHH---------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence            5556666666778888899999988877765432         33333433 488899999999988743      2333


Q ss_pred             HHHHHhCCChHHHHHHhcc-----CChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHH
Q 008585          271 ARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAEC  343 (560)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~  343 (560)
                      +..+ +...+..+.....+     .++.++...+.++..++.  .++.     -.+.++-++.++..+.  ...+..+.+
T Consensus       101 ~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~~~--~~~~~~L~I  172 (1073)
T 3gjx_A          101 CEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRTSE--SLCQNNMVI  172 (1073)
T ss_dssp             HHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHCH--HHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCCCH--HHHHHHHHH
Confidence            3333 33333444433322     245666777777777763  2211     1456677777776443  456777777


Q ss_pred             HHHHccC---C--h--------hHHHHHHhCCCHHHHHHhc----cC---CccHHHHHHHHHHhhccccHHHHHhCCcHH
Q 008585          344 LQNLTAS---N--E--------NLRRSVVSEGGIRSLLAYL----DG---PLPQESAVGALRNLVGSVSQEVLISLGFFP  403 (560)
Q Consensus       344 L~~La~~---~--~--------~~~~~i~~~g~l~~L~~ll----~~---~~~~~~a~~~L~nla~~~~~~~l~~~~~i~  403 (560)
                      |..|...   .  .        ..++.+.+.  ++.++.++    .+   +.+...++.+|+.+..=-....+.+.++++
T Consensus       173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~  250 (1073)
T 3gjx_A          173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIS  250 (1073)
T ss_dssp             HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHH
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHH
Confidence            7777652   1  0        112222222  44444443    22   345567788888888711234566788888


Q ss_pred             HHH-HHHhcCCHHHHHHHHHHHHHHhC
Q 008585          404 RLV-HVLKAGSLGAQQAAASALCRVCT  429 (560)
Q Consensus       404 ~Lv-~lL~~~~~~v~~~A~~aL~~La~  429 (560)
                      .++ .+|  .++.++..|+.+|+.+..
T Consensus       251 ~L~~~~L--~~~~~r~aA~dcL~eIv~  275 (1073)
T 3gjx_A          251 TLIYKFL--NVPMFRNVSLKCLTEIAG  275 (1073)
T ss_dssp             HHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CChHHHHHHHHHHHHHHh
Confidence            774 555  577899999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	560
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-09
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (170), Expect = 2e-13
 Identities = 57/340 (16%), Positives = 114/340 (33%), Gaps = 8/340 (2%)

Query: 191 AVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVE-S 248
           A +    I  L +LL      +  K   ++  L+ +  S    + S  ++  ++R ++ +
Sbjct: 12  AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71

Query: 249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308
                      +L  LS   E   AI   GG+  L+++  +        A  TL N+   
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 309 PE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS- 366
            E  +  +   G +  M+ LL+   +         CLQ L   N+  +  +++ GG ++ 
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQILAYGNQESKLIILASGGPQAL 190

Query: 367 --LLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424
             ++          +    L+ L    S +  I      + + +                
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250

Query: 425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKS 484
            R   S    K  G  G    L++LL +   +V   AA  +S+L       + +      
Sbjct: 251 LRNL-SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309

Query: 485 VPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISY 524
           +  LV+ +  +           C      S+  +  M   
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (158), Expect = 6e-12
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)

Query: 347 LTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNL-VGSVSQEVLISLGFFPRL 405
           L  ++++ +R     G  +  +  +      E   GAL  L     ++ V+  L   P  
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465

Query: 406 VHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
           V +L +     Q+ AA  LC +    E  + +   G T  L +LL ++   V   AA  +
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

Query: 466 SSL 468
             +
Sbjct: 526 FRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (158), Expect = 7e-12
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 1/135 (0%)

Query: 172 HKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231
             A+  LV+ +    ++               +       I E     +  LA       
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQ-QQFVEGVRMEEIVEGCTGALHILARDVHNRI 454

Query: 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD 291
            +     +P  ++L+ S     +  A   L  L+   E A AI   G   PL E+  + +
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 514

Query: 292 SVSQAAAACTLKNIS 306
                 AA  L  +S
Sbjct: 515 EGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (152), Expect = 3e-11
 Identities = 37/238 (15%), Positives = 84/238 (35%), Gaps = 12/238 (5%)

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ-MLAEEGIVSVMI 325
            AE+A        +  L ++    D V    AA  +  +S     R  ++    +VS ++
Sbjct: 11  DAELAT-----RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGA 383
           + +     + +    A  L NL+   E    ++   GGI +L+  L  P+      A+  
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 384 LR--NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEA 440
           L    L    ++  +   G   ++V +L   ++         L  +   + E K ++  +
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184

Query: 441 GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQN 498
           G    L+ ++              +  ++++  + +    +   +  L   L    Q 
Sbjct: 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 242

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 4e-11
 Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 20/185 (10%)

Query: 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICS 222
           L         KA   L+  +     N   +  +  I  LVQLL       + +T      
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRP 282
                      + EG                    T +L  L+        I G   +  
Sbjct: 424 QQFVEGVRMEEIVEG-------------------CTGALHILARDVHNRIVIRGLNTIPL 464

Query: 283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAE 342
            +++  +     Q  AA  L  ++   E  + +  EG  + + +LL      G   YAA 
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAA 523

Query: 343 CLQNL 347
            L  +
Sbjct: 524 VLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 18/87 (20%), Positives = 32/87 (36%)

Query: 444 PLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503
           P L KLL  +   V   AA  +  L     +   + R  + V  +V+ +  +      + 
Sbjct: 20  PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79

Query: 504 AVACLASLSPSKKCKKLMISYGAIGYL 530
               L +LS  ++    +   G I  L
Sbjct: 80  TAGTLHNLSHHREGLLAIFKSGGIPAL 106

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 4e-13
 Identities = 55/382 (14%), Positives = 126/382 (32%), Gaps = 43/382 (11%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVGKEK 256
           I   VQ L++   + +      I     +  S +  +   G +  L+ L+ S +   ++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 257 ATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVPEVRQM 314
           A  +L+ L   S           G+R  + + +   +   Q      L N+S+  E+++ 
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 315 LAEEGIVSVMIKLLDCGILLGS--------------KEYAAECLQNLTASNENLRRSVVS 360
           L  + +  +  +++                         A  CL+NL++++   +     
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 361 EGGIRSLLAYLDGPLP--------QESAVGALRNLVGSVSQEV---LISLGFFPRLVHVL 409
            G I SL+AY+   +          E+ +  L NL   +  EV      L +  R  +  
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 410 KAG--------SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVR--- 458
           K+                    L    T+ +    +  +      + L+           
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 459 ---EVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515
               +     S  +      + +   +K +P + +LL  S  +   +   + L+++S   
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLSNMSRHP 362

Query: 516 KCKKLMISYGAIGYLKKLSEMD 537
              ++M +       + L+   
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHT 384

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 3e-12
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 403 PRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461
           P+ V  L +     Q   A  +   C      K+ V + G    L+ LL +   +V++ A
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 462 AQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM 521
           A A+ +LV      +   R    +   V LL  +     +K     L +LS + + K+ +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 522 ISYGAIGYLKKLSEMDIPGARKLL 545
           I+        ++            
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNS 148

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 1e-10
 Identities = 53/426 (12%), Positives = 126/426 (29%), Gaps = 50/426 (11%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV 217
           + +  L     + +      +     +DE     V     I  LV LL + +  +++   
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 218 TVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLSMSAEMARAIV 275
             + +L   S + +     +  +   + L+        +++ T  L  LS + E+   ++
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 276 GHGGVRPLIEIC---------------QTGDSVSQAAAACTLKNISAVPE-VRQMLAEEG 319
                     +                +  D      A   L+N+S+     + M    G
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQES 379
           ++  ++  +   +     +  +         N + R         R L         ++S
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245

Query: 380 AVGALRNLVGSVSQE-----------------VLISLGFFPRLVHVLKAGSLGAQQAAAS 422
           + G   N    +                     L         ++++      A   A +
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

Query: 423 ALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC 475
              +  T+          + +  +    P + +LL++  + V    A  +S++   P   
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365

Query: 476 REVKRDDKSVPNLVQLLDPSPQNTAK-----KYAVACLASLSP-SKKCKKLMISYGAIGY 529
           R +    +  P + +LL     NT+        A   + +L     +  K   S   +  
Sbjct: 366 RVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423

Query: 530 LKKLSE 535
           +  L  
Sbjct: 424 IINLCR 429

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 9e-10
 Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 17/224 (7%)

Query: 180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV-TVICSLAESGSCENWLVSEGV 238
           E      +            +     +  S ++        +     +     WL     
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 239 LPPLIRLVESGS------TVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQTGD 291
           +   + L+                  ++  +  MS+ M++ I     G+  +  + Q+G+
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSK-----EYAAECLQN 346
           S    + A  L N+S  P + +++  +     + +LL       S        A   ++N
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQVF-PEVTRLLTSHTGNTSNSEDILSSACYTVRN 403

Query: 347 LTASNENLRRSVVSEGGIRSLLAYL---DGPLPQESAVGALRNL 387
           L AS   L +   S   + +++        P   E+A   L ++
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKT 216
           +           +  +   D  +   + + K    +     I   + L+  +      + 
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 217 VTVICSLAESGSCENW-------LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE 269
                    +              + E  LP + RL++SG++         L  +S    
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363

Query: 270 MARAIVGHGGVRPLIEICQTGDSVS------QAAAACTLKNISAV-PEVRQMLAEEGIVS 322
           +   ++G+     +  +  +    +       ++A  T++N+ A  P++ +      +++
Sbjct: 364 L-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 323 VMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356
            +I L        + E A   L ++  S++ L+ 
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDM-WSSKELQG 455

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 54/377 (14%), Positives = 131/377 (34%), Gaps = 54/377 (14%)

Query: 158 ELLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMGRSNIAALVQLLTATSPR-IREK 215
           ++  +L    ++ +  A     +   +E    +  V+    +  LV+ +    P  ++ +
Sbjct: 80  QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 139

Query: 216 TVTVICSLAESGSCENWLVSE-GVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARA 273
               + ++A   S +  +V +   +P  I+L+ +GS   KE+A  +L  ++  S +    
Sbjct: 140 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 199

Query: 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL 333
           ++    + P++ +  +        A  TL N+    + +   +        +  L   + 
Sbjct: 200 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 259

Query: 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESA------------- 380
             +   A   +  L+   +   ++V+     + L+  L                      
Sbjct: 260 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 319

Query: 381 ------------VGALRNLVGSVSQEV---------------------LISLGFFPRLVH 407
                       + ALR L+ S  + +                     +I     P LV 
Sbjct: 320 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 379

Query: 408 VLKAGSLGAQQAAASALCRVCTSA----EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463
           +L+      ++ A  A+    +      ++ + +   GC   L  LLE   N + EV   
Sbjct: 380 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLD 439

Query: 464 AISSLVTLPQNCREVKR 480
           A+ +++ + +  +E + 
Sbjct: 440 ALENILKMGEADKEARG 456

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 59/349 (16%), Positives = 120/349 (34%), Gaps = 23/349 (6%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           ++   S+              +  L  G +E K +A+ +L     +       V+  + +
Sbjct: 147 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 206

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKA 257
             ++ L  +  P +       + +L        +W V    LP L +L+ S  T     A
Sbjct: 207 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 266

Query: 258 -TISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV-RQML 315
                       E  +A++     + L+E+     ++ Q  A   + NI    ++  Q++
Sbjct: 267 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV 326

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
              G++  +  LL        K+ A   + N+TA N    ++V+    I  L+  L+   
Sbjct: 327 INAGVLPALRLLLSSPKE-NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 385

Query: 376 PQ--ESAVGALRNLVGSVSQ-----EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428
            +  + A  A+ N      Q       L+S G    L  +L+       +    AL  + 
Sbjct: 386 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 445

Query: 429 TSAEM------------KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
              E                + +AG    +    + + + + E A + I
Sbjct: 446 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 7/268 (2%)

Query: 283 LIEICQTGDSVSQAAAACTLKNI--SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYA 340
           + +   + D   Q +A    + I          ++ + G+V  +++ +        +  A
Sbjct: 81  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 140

Query: 341 AECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLV--GSVSQEVL 396
           A  L N+ +      + VV    +   +  L       +E A+ AL N+    +  ++ +
Sbjct: 141 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 200

Query: 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPN 455
           +       ++ +  +      + A   L  +C            +   P L KL+ +   
Sbjct: 201 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 260

Query: 456 SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515
                A  AIS L   PQ   +   D +    LV+LL             A    ++ + 
Sbjct: 261 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 320

Query: 516 KCKKLMISYGAIGYLKKLSEMDIPGARK 543
              +++I+ G +  L+ L        +K
Sbjct: 321 LQTQVVINAGVLPALRLLLSSPKENIKK 348

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 7/250 (2%)

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS 292
           ++S+ + P      ++     +E A   L  L  + + A       G+  L+       +
Sbjct: 13  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 72

Query: 293 --VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350
             +   AA         V  +++ +   G +  +++LLD       +  A   +  L   
Sbjct: 73  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 132

Query: 351 NENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGALRNLV--GSVSQEVLISLGFFPRLV 406
            E      +   G   L           +  +   L+NL+      +  L S+G   +LV
Sbjct: 133 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 192

Query: 407 HVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
            +++       +    ALC + T   +  +   E       +     +     E   + +
Sbjct: 193 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEEL 252

Query: 466 SSLVTLPQNC 475
                L Q C
Sbjct: 253 EFCEKLLQTC 262

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 7/230 (3%)

Query: 187 KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI-RL 245
           K+ L V+ +       +   A   + RE  + ++  L E+            +  L+ R 
Sbjct: 8   KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 67

Query: 246 VESGSTVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTG--DSVSQAAAACTL 302
           +E+G+   + +A   +   S +    +  ++G G +R L+ +      D+V   A     
Sbjct: 68  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127

Query: 303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG 362
             +                SV+++ +   +     + A     NL   +   + ++ S G
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQ-NLLVGHPEHKGTLCSMG 186

Query: 363 GIRSLLAYLDGPLP--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK 410
            ++ L+A +        E  +GAL +LV    Q V         L  +L+
Sbjct: 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLR 236

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 403 PRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAG-CTPLLIKLLEAKPNSVREVA 461
           P      +A     ++ A   L  +C + +      +      L+ + LEA    +R  A
Sbjct: 20  PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79

Query: 462 AQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM 521
           AQ I +        +E      ++  L++LLD    +T +  A+  ++ L   ++   L 
Sbjct: 80  AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 68/335 (20%), Positives = 122/335 (36%), Gaps = 17/335 (5%)

Query: 223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL--SMSAEMARAIVGHGGV 280
           +A+ GS  N       +  +++ + S +   + +AT + ++L           I+  G +
Sbjct: 1   MADIGS--NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 58

Query: 281 RPLIEICQTGDSVS-QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKE 338
              +      D    Q  +A  L NI S   E  + + + G +   I LL         E
Sbjct: 59  PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISE 117

Query: 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS------ 392
            A   L N+       R  V+  G I  LLA L  P     A G LRNL  ++S      
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177

Query: 393 ---QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK-KLVGEAGCTPLLIK 448
                +       P LV +L          +  A+  +      + ++V + G  P L+K
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237

Query: 449 LLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL 508
           LL A    +   A +AI ++VT      +   D  ++     LL     N  K+      
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297

Query: 509 ASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARK 543
              +  +   + ++++G + +L  +        +K
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 332

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 60/334 (17%), Positives = 107/334 (32%), Gaps = 21/334 (6%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI 212
            G     ++ L   H     +A+ +L     +       V+    I  L+ LL       
Sbjct: 98  GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST 157

Query: 213 REKTVTVICSLAESGSCEN------WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM 266
                    +   S  C N          E +LP L+RL+          +  ++  L+ 
Sbjct: 158 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 217

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA--EEGIVSVM 324
                  +V   GV P +        +     A             Q     + G ++V 
Sbjct: 218 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF 277

Query: 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVG 382
             LL        KE     + N+TA  ++  + VV+ G +  L+  L       Q+ A  
Sbjct: 278 PSLLTNPKTNIQKEAT-WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW 336

Query: 383 ALRNLVGSVSQE---VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE------- 432
           A+ N     + E    L+  G    L+++L A      Q    A+  +  +AE       
Sbjct: 337 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 396

Query: 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466
           +  ++ E G    +  L   +  SV + +   I 
Sbjct: 397 LSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 77/506 (15%), Positives = 163/506 (32%), Gaps = 52/506 (10%)

Query: 51   LEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLD 110
             +Q+   +  L     F      ++      K LK A    E+  +        + +  D
Sbjct: 540  TQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD 599

Query: 111  ALSGKLDLNLHDCGLLIKTGVLGEATLP----LSVAGSSTDAEATTHGNTRELLARLQIG 166
             L   L   L      +K  +    T+     ++ +    D           L + L+  
Sbjct: 600  NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN 659

Query: 167  HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES 226
                K   L +L   +K    ++ A M  + +  L  L++ +   + +  ++ + +LA+ 
Sbjct: 660  QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV 719

Query: 227  GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI 286
                   +S  +L  LI LV S    G   + +     ++       +     +R L   
Sbjct: 720  YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP 779

Query: 287  C----------QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL-- 334
                       Q+  S+++  AA T       P V     ++   S     +    LL  
Sbjct: 780  VYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSL 839

Query: 335  ----------GSKEYAAECLQNLTASNENLRRSVVSEGG----------IRSLLAYLDG- 373
                      G  E  +  L+  ++ +E ++ +     G          +  +L  +   
Sbjct: 840  GEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQ 899

Query: 374  PLPQESAVGALRNLVGSVSQEVLISL--GFFPRLVHVLKAGSLGAQQAAASALCRVCTSA 431
            P  Q   + +L+ ++ S S   L       +  L+   +    G +   A  L ++    
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 959

Query: 432  EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQ 490
                L       P L   L +  +  R     A+   +   PQ    + ++   + + ++
Sbjct: 960  PETLL-------PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLK 1010

Query: 491  LL-DPSPQNTAKKYAVACLASLSPSK 515
             L DP      ++ A+    S + +K
Sbjct: 1011 TLEDPDLNV--RRVALVTFNSAAHNK 1034

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ--ESAVGALRNLVGSVSQE 394
           +E A   L+ L    E   +       I  +LA    P      + +  +  L     Q+
Sbjct: 458 REAATSNLKKLV---EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514

Query: 395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP 454
           +       P ++ +        +   A +L ++    +   L  E    P+L KL + + 
Sbjct: 515 ITTKH-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV--KPILEKLTQDQD 571

Query: 455 NSVREVAAQAISSL 468
             V+  A +A++ L
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435
            +E+A   L+ LV    +E   +    P+++ +    +   +      +  +        
Sbjct: 457 IREAATSNLKKLVEKFGKEWAHAT-IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI 515

Query: 436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLL-DP 494
                   P ++++      +VR   A+++  +  +  N        +  P L +L  D 
Sbjct: 516 TTKHM--LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQ 570

Query: 495 SPQNTAKKYAVACLASLS 512
                 K +A   L  LS
Sbjct: 571 DVD--VKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	560
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.98
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.96
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.76
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.4
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.37
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.29
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.2
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.11
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.07
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.99
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.82
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.73
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.71
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.66
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.6
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.33
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.29
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.06
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.06
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.93
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.85
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.65
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.81
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.88
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.89
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.95
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.56
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.96

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-30  Score=271.19  Aligned_cols=398  Identities=17%  Similarity=0.209  Sum_probs=334.3

Q ss_pred             hhhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChH-HHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q 008585          149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAES  226 (560)
Q Consensus       149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~-~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~  226 (560)
                      .+...+.|++++..|++++++.+..|+..+.+++..+.. ....+++.|+++.|+++|++. ++++|..|+++|.+++..
T Consensus         8 ~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~   87 (434)
T d1q1sc_           8 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG   87 (434)
T ss_dssp             TSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTS
T ss_pred             cchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence            344677899999999999999999999999998764332 245678889999999999754 588999999999999876


Q ss_pred             Cc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCC-----hHHHHHHH
Q 008585          227 GS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAA  299 (560)
Q Consensus       227 ~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~  299 (560)
                      .+ .+..+++.|+++.++.+|.+++..+++.++++|.+++.+ ++.+..+.+.|+++.++.++...+     ......++
T Consensus        88 ~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            64 788899999999999999999999999999999999876 667778889999999999997643     24556788


Q ss_pred             HHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--Ccc
Q 008585          300 CTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLP  376 (560)
Q Consensus       300 ~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~  376 (560)
                      +++.+++.+. .........++++.+..++.++++ +++..++++|.+++.+++.....+.+.|+++.+++++.+  +.+
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~  246 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI  246 (434)
T ss_dssp             HHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred             HHHHHHhhcccccchhhhhhhHHHHHHHHHhcccc-chhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhh
Confidence            8999998754 344444557789999999998886 899999999999999888877788889999999999976  557


Q ss_pred             HHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccC
Q 008585          377 QESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK  453 (560)
Q Consensus       377 ~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~  453 (560)
                      +..++.+|.+++.  +.....+.+.|+++.++.++++.+++++..|+++|.+++.. ++....+.+.|+++.+++++.+.
T Consensus       247 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~  326 (434)
T d1q1sc_         247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA  326 (434)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS
T ss_pred             hhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc
Confidence            8999999999998  34566778999999999999999999999999999999965 77888899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCC-hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-------ChhhHHHHHHcC
Q 008585          454 PNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-------SKKCKKLMISYG  525 (560)
Q Consensus       454 ~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-------~~~~r~~i~~~g  525 (560)
                      +..++..|+++|.+++.+. ......+.+.++++.|+.++++.+. .....++.++.++..       ++..+..+.+.|
T Consensus       327 ~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~  405 (434)
T d1q1sc_         327 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECG  405 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcC
Confidence            9999999999999998543 3333445567899999999997754 466678888876642       335677888999


Q ss_pred             hhHHHHHhhccCchhHHHHHHHH
Q 008585          526 AIGYLKKLSEMDIPGARKLLERL  548 (560)
Q Consensus       526 ~i~~L~~L~~~~~~~akkl~~~l  548 (560)
                      +++.|..|.+.+++...+....+
T Consensus       406 ~~~~i~~L~~~~n~~i~~~a~~i  428 (434)
T d1q1sc_         406 GLDKIEALQRHENESVYKASLNL  428 (434)
T ss_dssp             SHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999988765555443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=285.03  Aligned_cols=385  Identities=18%  Similarity=0.181  Sum_probs=330.8

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~  230 (560)
                      ...|+.|+..|++++.+.+..|+..+.+++.. +..+..++.. |.++.|+.+|+. +++++++.|+.+|.+++.+++.+
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            45699999999999999999999999999864 4444555544 669999999976 56899999999999999988899


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-C
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-V  308 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~  308 (560)
                      ..+++.|+++.|+++|+++++.++..|+++|.+++.+ +..+..+.+.|+++.|+.+++++++.++..++.+|.+++. +
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999876 4456778899999999999999999999999999999996 4


Q ss_pred             chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (560)
Q Consensus       309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n  386 (560)
                      ++.+..+.+.|+++.++.++.+.+...++..++.++.+++.. ++++..+++.|+++.|+.++.+  +.++..+++++.+
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~  253 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHh
Confidence            577888889999999999998776657899999999999874 5678889999999999999976  4578899999999


Q ss_pred             hhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHc--cCCHHHHHHHHH
Q 008585          387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE--AKPNSVREVAAQ  463 (560)
Q Consensus       387 la~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~--s~~~~v~~~A~~  463 (560)
                      ++.... ......|+++.|++++.++++.++..|+++|++++.+ ++++..+.+.|+++.|+.++.  ++.+++++.|+.
T Consensus       254 ls~~~~-~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~  332 (529)
T d1jdha_         254 LSDAAT-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HHTTCT-TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccc-chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHH
Confidence            986211 1112246799999999999999999999999999864 778888999999999999885  566789999999


Q ss_pred             HHHHhcCCChh---hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchh
Q 008585          464 AISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG  540 (560)
Q Consensus       464 aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~  540 (560)
                      +|.+|+.....   ....+...++++.++.++.+.........++.++.+++.++.++..+.+.|+++.|.++.....++
T Consensus       333 aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~  412 (529)
T d1jdha_         333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHH
Confidence            99999965443   344555778999999999987655677789999999999999999999999999999998655543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-30  Score=278.13  Aligned_cols=386  Identities=22%  Similarity=0.210  Sum_probs=336.7

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENW  232 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~  232 (560)
                      ..++.|+..|++++++.+..|+.+|.+++.+++..+..+.+.|+++.|+.+|++++++++..++.+|.+++..++ .+..
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHH
Confidence            358999999999999999999999999999988888888899999999999999999999999999999997665 7888


Q ss_pred             HHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585          233 LVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (560)
                      +...|+++.+++++... +..++..+++++.+++.+++++..+.+.|+++.|+.++.++++.++..++++|.+++.....
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~  260 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc
Confidence            88999999999999765 56788999999999999999999999999999999999999999999999999999864322


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHh
Q 008585          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNL  387 (560)
Q Consensus       312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nl  387 (560)
                        .....|+++.+++++.+++. .++..++.+|++++.+++..+..+.+.|+++.++..+..    +.+++.++.+|+++
T Consensus       261 --~~~~~~~i~~Lv~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l  337 (529)
T d1jdha_         261 --QEGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  337 (529)
T ss_dssp             --CSCCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --hhhhhhcchhhhhhcccccH-HHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcc
Confidence              22335789999999998886 899999999999999889989999999999999998842    45788999999999


Q ss_pred             hc-cc----cHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC-------
Q 008585          388 VG-SV----SQEVLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP-------  454 (560)
Q Consensus       388 a~-~~----~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~-------  454 (560)
                      +. ..    .+..+...+.++.++.++..++ ..++..+++++++++.+++.+..+.+.|+++.|++++.+.+       
T Consensus       338 ~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~  417 (529)
T d1jdha_         338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT  417 (529)
T ss_dssp             TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---
T ss_pred             cchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHH
Confidence            97 22    3445678899999999998754 67888999999999999999999999999999999996543       


Q ss_pred             ---------------HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585          455 ---------------NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK  519 (560)
Q Consensus       455 ---------------~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~  519 (560)
                                     .++.+.+..+|..++.++.++ ..+.+.++++.|+++|.+++ +.++..++.+|.+|+.+++.++
T Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r-~~~~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~  495 (529)
T d1jdha_         418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAE  495 (529)
T ss_dssp             --------CBTTBCHHHHHHHHHHHHHHHTTSHHHH-HHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHH-HHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHHhcChhhHH
Confidence                           345677788899998766665 45556889999999998764 4578899999999999999999


Q ss_pred             HHHHcChhHHHHHhhccCchhHHHH
Q 008585          520 LMISYGAIGYLKKLSEMDIPGARKL  544 (560)
Q Consensus       520 ~i~~~g~i~~L~~L~~~~~~~akkl  544 (560)
                      .|.+.|+++.|++|.+.+++.+++.
T Consensus       496 ~i~~~g~~~~L~~Ll~s~n~~v~~~  520 (529)
T d1jdha_         496 AIEAEGATAPLTELLHSRNEGVATY  520 (529)
T ss_dssp             HHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999999865543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=7e-29  Score=263.06  Aligned_cols=393  Identities=15%  Similarity=0.186  Sum_probs=332.7

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-h
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-C  229 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-~  229 (560)
                      ...++.++..+.+++.+.+..|+..+.+++.. .......+++.|+++.|+++|+.+ ++.++..|+++|.+++...+ .
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            44688999999999999999999999998753 333456788899999999999864 58899999999999998765 6


Q ss_pred             HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 008585          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (560)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (560)
                      ...+...|+++.++.+|.+++..++..++++|++|+.+ ++.+..+.+.|+++.|+.++.+.++.++..++++|+|++.+
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence            77888999999999999999999999999999999875 77888999999999999999999999999999999999975


Q ss_pred             c-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHH
Q 008585          309 P-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALR  385 (560)
Q Consensus       309 ~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~  385 (560)
                      . .........++++.++.++.+++. +++..++++|.+++..++.....+++.|+++.++.++.+  +.++..++.+|+
T Consensus       235 ~~~~~~~~~~~~~l~~l~~~l~~~d~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~  313 (503)
T d1wa5b_         235 KKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  313 (503)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence            4 334444557899999999998886 899999999999999888888889999999999999976  557899999999


Q ss_pred             Hhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHH
Q 008585          386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA  462 (560)
Q Consensus       386 nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~  462 (560)
                      |++.  ......+.+.|+++.|..++.++++.++..++++|+|++. +++....+.+.|+++.+++++.+.+..++..|+
T Consensus       314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~  393 (503)
T d1wa5b_         314 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC  393 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHH
Confidence            9998  3445667889999999999999999999999999999986 478888999999999999999999999999999


Q ss_pred             HHHHHhcCCC---hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC------------ChhhHHHHHHcChh
Q 008585          463 QAISSLVTLP---QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP------------SKKCKKLMISYGAI  527 (560)
Q Consensus       463 ~aL~~L~~~~---~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~------------~~~~r~~i~~~g~i  527 (560)
                      ++|.+++.+.   ......+.+.+.+..++.+|+..+.+ ....++.++.++..            .......|.+.|++
T Consensus       394 ~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~-~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~  472 (503)
T d1wa5b_         394 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM  472 (503)
T ss_dssp             HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCH
Confidence            9999998533   23334455689999999999887543 45566766665531            23455678899999


Q ss_pred             HHHHHhhccCchhHHHHHHH
Q 008585          528 GYLKKLSEMDIPGARKLLER  547 (560)
Q Consensus       528 ~~L~~L~~~~~~~akkl~~~  547 (560)
                      +.|..|.+.+++...+.+..
T Consensus       473 ~~i~~Lq~~~~~~i~~~A~~  492 (503)
T d1wa5b_         473 EKIFNCQQNENDKIYEKAYK  492 (503)
T ss_dssp             HHHHGGGGCSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHH
Confidence            99999998888765444433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.9e-27  Score=240.82  Aligned_cols=353  Identities=18%  Similarity=0.237  Sum_probs=300.5

Q ss_pred             hHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHH
Q 008585          155 NTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENW  232 (560)
Q Consensus       155 ~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~  232 (560)
                      .++.|+..|+. .+++.+..|+..|.+++..+++.+..+++.|+++.++++|+++++++++.|+++|++++.+.+ .+..
T Consensus        57 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~  136 (434)
T d1q1sc_          57 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL  136 (434)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHH
Confidence            58899999964 457889999999999999888888899999999999999999999999999999999998765 7888


Q ss_pred             HHhCCCHHHHHHhhhcCC-----HHHHHHHHHHHHHhhCChhh-HHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585          233 LVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (560)
                      +.+.|+++.++.++...+     ......+++++.+++.+... .......++++.++.++.+++++++..++++|.+++
T Consensus       137 i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~  216 (434)
T d1q1sc_         137 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT  216 (434)
T ss_dssp             HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccc
Confidence            899999999999998753     34556788899999876433 333345667899999999999999999999999999


Q ss_pred             CCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHH
Q 008585          307 AVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA  383 (560)
Q Consensus       307 ~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~  383 (560)
                      ..+ +....+.+.|+++.+++++.+++. .++..++.+|.+++..++..+..+++.|+++.+..++.+  +.++..++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~Lv~ll~~~~~-~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~  295 (434)
T d1q1sc_         217 DGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT  295 (434)
T ss_dssp             SSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhcccchhcccccccchh-hhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHH
Confidence            755 566777789999999999999886 899999999999999888888899999999999999987  4578999999


Q ss_pred             HHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHHHH
Q 008585          384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVRE  459 (560)
Q Consensus       384 L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~  459 (560)
                      |.+++.  ......+.+.|+++.++.++.++++.++..|++++++++.  +++....+.+.|+++.|++++.+.+++++.
T Consensus       296 L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~  375 (434)
T d1q1sc_         296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ  375 (434)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHH
T ss_pred             HhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHH
Confidence            999997  3456677889999999999999999999999999999984  467778899999999999999999999999


Q ss_pred             HHHHHHHHhcC------CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHH
Q 008585          460 VAAQAISSLVT------LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (560)
Q Consensus       460 ~A~~aL~~L~~------~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~  509 (560)
                      .++++|.+|..      ........+.+.+++..+-.+.++. .+.+++.+..++-
T Consensus       376 ~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~-n~~i~~~a~~il~  430 (434)
T d1q1sc_         376 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKASLNLIE  430 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            99999999862      2223455667788888776665554 4456777777664

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.9e-26  Score=241.71  Aligned_cols=357  Identities=15%  Similarity=0.212  Sum_probs=305.7

Q ss_pred             hchHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585          153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (560)
Q Consensus       153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (560)
                      ...++.|+..++. .+.+.+..|+..|.+++..++.....+...|+++.++.+|.+++.++++.|+++|++++.+.+ ++
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            3458889999975 457789999999999999888888888899999999999999999999999999999998764 89


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-  308 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-  308 (560)
                      ..+.+.|+++.++.++.+.+..++..++++|.+++.+.+ ........++++.|+.++.+.+++++..++++|.+++.. 
T Consensus       198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~  277 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  277 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence            999999999999999999999999999999999987643 333344578899999999999999999999999999974 


Q ss_pred             chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (560)
Q Consensus       309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n  386 (560)
                      ++....+.+.|+++.++.++.+++. .++..++.+|++++.+++.....+.+.|+++.+..++++  +.++..++++|.|
T Consensus       278 ~~~~~~~~~~~~~~~l~~ll~~~~~-~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~n  356 (503)
T d1wa5b_         278 QEAIQAVIDVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  356 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhcccCCch-hhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4667888999999999999999886 899999999999999888888888899999999999987  4578999999999


Q ss_pred             hhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC----hhHHHHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585          387 LVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (560)
Q Consensus       387 la~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~----~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~  460 (560)
                      ++.  +.....+.+.|+++.++..+.+++..++..|+++|.+++.+    ++....+.+.|+++.|++++...+.++...
T Consensus       357 l~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~  436 (503)
T d1wa5b_         357 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV  436 (503)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred             HhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHH
Confidence            987  35567778999999999999999999999999999999842    456778889999999999999999999999


Q ss_pred             HHHHHHHhcCC-----------ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHh
Q 008585          461 AAQAISSLVTL-----------PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL  511 (560)
Q Consensus       461 A~~aL~~L~~~-----------~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L  511 (560)
                      ++.+|.+|...           .......+.+.+++..+..+..+. .+.+.+.|..++-..
T Consensus       437 ~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~-~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         437 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE-NDKIYEKAYKIIETY  497 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            99999988621           112334566778888776655544 445777887777544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.2e-26  Score=234.20  Aligned_cols=363  Identities=17%  Similarity=0.194  Sum_probs=279.3

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWL  233 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l  233 (560)
                      .|+.|++.|++++++++..|+..|.+++.++++++..+++.|++++|+++|+++++++|..|+.+|.+|+.++ +++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999655 488999


Q ss_pred             HhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh----------------ccCChHHHH
Q 008585          234 VSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC----------------QTGDSVSQA  296 (560)
Q Consensus       234 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll----------------~~~~~~~~~  296 (560)
                      .+.|+++.++.++.. .++.++..++++|.+++.++.....+...|+ +.++..+                ...++.++.
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            999999999998865 5788999999999999998777666655443 3333332                234678899


Q ss_pred             HHHHHHHHhcCCchhHHHHHh-cCcHHHHHHHhhcCC-----chhHHHHHHHHHHHHcc---------------C-----
Q 008585          297 AAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGI-----LLGSKEYAAECLQNLTA---------------S-----  350 (560)
Q Consensus       297 ~a~~aL~nLa~~~~~~~~i~e-~g~v~~L~~lL~~~~-----~~~v~~~a~~~L~~La~---------------~-----  350 (560)
                      .++.+|.+++.+++++..+.. .|+++.++.++.+..     ...........+.+...               .     
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            999999999998888877765 678999999886321     00122222222222111               0     


Q ss_pred             ------------------------------ChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc-cc-----
Q 008585          351 ------------------------------NENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SV-----  391 (560)
Q Consensus       351 ------------------------------~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~-~~-----  391 (560)
                                                    +......+...++++.++.++..   +..++.+.+++.+++. ..     
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                          00000111111234555555532   4567888899999886 11     


Q ss_pred             -cHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHH
Q 008585          392 -SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQA  464 (560)
Q Consensus       392 -~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s------~~~~v~~~A~~a  464 (560)
                       .+..+.+.++++.|+.++.++++.++..+++++++++.+++++..+.+ ++++.|+.++..      .+++++..|+.+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence             234556789999999999999999999999999999999988888765 569999999953      335689999999


Q ss_pred             HHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585          465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK  519 (560)
Q Consensus       465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~  519 (560)
                      |.+|+.+.+..+..+.+.++++.|++++.+.+...+++.|..+|.+|+.+++.|.
T Consensus       401 L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~  455 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             HHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHh
Confidence            9999966554455555778999999999877555678899999999998886653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.9e-24  Score=219.95  Aligned_cols=345  Identities=18%  Similarity=0.184  Sum_probs=265.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHH
Q 008585          197 NIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAI  274 (560)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l  274 (560)
                      .+|.|+++|++++++++..|+++|++++.+ ++.+..+.+.|++|.|+++|+++++.++..|+++|.+|+. +++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            489999999999999999999999999975 5599999999999999999999999999999999999985 57889999


Q ss_pred             HhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh--------------cCCchhHHHH
Q 008585          275 VGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD--------------CGILLGSKEY  339 (560)
Q Consensus       275 ~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~--------------~~~~~~v~~~  339 (560)
                      .+.|+++.|+.++.. .++.++..++++|++++..+..+..+...+..+.+..++.              ......++..
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            999999999999865 6788999999999999998877777776655444443332              1222378999


Q ss_pred             HHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--------CccHHHHHHHHHHhhc----------------------
Q 008585          340 AAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--------PLPQESAVGALRNLVG----------------------  389 (560)
Q Consensus       340 a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--------~~~~~~a~~~L~nla~----------------------  389 (560)
                      ++.+|.+++..++..+..+...|+++.++.++.+        ......+...+.+...                      
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence            9999999998755544333456778888887743        1111111111111100                      


Q ss_pred             ------------------------------cccHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCCh------h
Q 008585          390 ------------------------------SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSA------E  432 (560)
Q Consensus       390 ------------------------------~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~~------~  432 (560)
                                                    ......+...++++.++.++.. .++.++..+.+++.+++...      .
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                          0011112334567778887765 56899999999999998541      2


Q ss_pred             HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC-----CchhhHHHHHHH
Q 008585          433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-----PQNTAKKYAVAC  507 (560)
Q Consensus       433 ~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-----~~~~~~~~a~~~  507 (560)
                      .+..+.+.|+++.|++++.+.++.++..++.+|++|+.++.++..+..  ++++.++.+|...     +.+.++..++.+
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence            345566789999999999999999999999999999988888665543  6789999998754     223578889999


Q ss_pred             HHHhCC-ChhhHHHHHHcChhHHHHHhhccC-chhHHH
Q 008585          508 LASLSP-SKKCKKLMISYGAIGYLKKLSEMD-IPGARK  543 (560)
Q Consensus       508 L~~L~~-~~~~r~~i~~~g~i~~L~~L~~~~-~~~akk  543 (560)
                      |.+++. ++.+++.+.+.|+++.|.++.+.. .+...+
T Consensus       401 L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~  438 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE  438 (457)
T ss_dssp             HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHH
Confidence            998874 668999999999999999998765 455443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6e-18  Score=162.69  Aligned_cols=194  Identities=18%  Similarity=0.196  Sum_probs=173.0

Q ss_pred             cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHH
Q 008585          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL  242 (560)
Q Consensus       165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L  242 (560)
                      +.+.+.+..|+..|.+++. +.++...+...|++++++. +++++++++|..|+.+|++++.+.+ .+..+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            4466788899999999995 6668888899999999886 7888899999999999999998765 78888999999999


Q ss_pred             HHhhhc-CCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcC
Q 008585          243 IRLVES-GSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEG  319 (560)
Q Consensus       243 v~lL~~-~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g  319 (560)
                      ++++.+ .++.++..++++|.+++.+ ++++..+...|+++.|+.+++++++.++..++++|+|++. +++.+..+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999975 5788999999999999875 6778889999999999999999999999999999999985 678999999999


Q ss_pred             cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHh
Q 008585          320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS  360 (560)
Q Consensus       320 ~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (560)
                      +++.++.++.++++ .+++.++.+|++|+..++...+.+..
T Consensus       187 ~v~~L~~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         187 MVQQLVALVRTEHS-PFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHHTSCCS-THHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999887 89999999999999988776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.1e-18  Score=162.64  Aligned_cols=188  Identities=19%  Similarity=0.193  Sum_probs=168.8

Q ss_pred             cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHH-HhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHH
Q 008585          289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK-LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSL  367 (560)
Q Consensus       289 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~-lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L  367 (560)
                      ..+.+.+..|+.+|.+++.+.+++..+...|+++.++. ++.+++. +++..|+.+|++++.+++..+..+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~-~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            34567888999999999999899999999999999886 5667775 899999999999999999999999999999999


Q ss_pred             HHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcC
Q 008585          368 LAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAG  441 (560)
Q Consensus       368 ~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g  441 (560)
                      ++++.+   +.++..++++|.+++.  +.....+...|+++.|+.+++++++.++..++++|++++. +++.+..+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999953   4578999999999998  4567788899999999999999999999999999999984 588999999999


Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHH
Q 008585          442 CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCRE  477 (560)
Q Consensus       442 ~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~  477 (560)
                      +++.|+.++.++++++|+.|+.+|.+|+.+.++...
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~  222 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR  222 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999999999999999976655433

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-11  Score=129.53  Aligned_cols=367  Identities=11%  Similarity=0.092  Sum_probs=246.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCC
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG  237 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g  237 (560)
                      .+...++..+..+|..|+..+..++..-+...   .....++.+..++++.++.+|..++.+|+.++..-.  .......
T Consensus       207 ~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~  281 (588)
T d1b3ua_         207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQED---LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTD  281 (588)
T ss_dssp             HHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH---HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHT
T ss_pred             HHHHHhcCCchhhHHHHHHHHHHhhccCCHHH---HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhh
Confidence            33444455666666667777666664322111   111246777777777888888888888888875322  1223345


Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (560)
                      .++.+..++++.+..++..++..+..++..  .+......-...++.+...+.+.++.++..++.++..++..-.  ..-
T Consensus       282 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~--~~~  359 (588)
T d1b3ua_         282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--KDN  359 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHH
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc--hhH
Confidence            688888999999999999999998888643  3333333345567888888889999999999888887763111  111


Q ss_pred             HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC--hhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccc
Q 008585          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN--ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSV  391 (560)
Q Consensus       316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~--~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~  391 (560)
                      .....++.+..++.+.++ +++..+..++..+...-  ....+     ..++.+...+.+  +.++..++..+..++..-
T Consensus       360 ~~~~l~p~l~~~l~d~~~-~v~~~~~~~l~~~~~~~~~~~~~~-----~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~  433 (588)
T d1b3ua_         360 TIEHLLPLFLAQLKDECP-EVRLNIISNLDCVNEVIGIRQLSQ-----SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             HHHHTHHHHHHHHTCSCH-HHHHHHHTTCHHHHHHSCHHHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHhhcchhhhhh-----HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Confidence            223468889999988886 89999888887776421  11222     236677777776  457888999998887511


Q ss_pred             cHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585          392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (560)
Q Consensus       392 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~  471 (560)
                      ..+ .....+.+.+..++.++...++..|+.+++.++..  +.........++.+.+++.+++...|..++.++..+...
T Consensus       434 ~~~-~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~--~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~  510 (588)
T d1b3ua_         434 GVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK--FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV  510 (588)
T ss_dssp             CGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH--HCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             ChH-hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            100 01123466777888888999999999999999743  111112234688999999999999999999999988632


Q ss_pred             ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHHH
Q 008585          472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLE  546 (560)
Q Consensus       472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~  546 (560)
                      -+  ..++ ....++.+++++++.. +.+|..++.++..+....+.  ........+.|.+|.+-.++++|..++
T Consensus       511 ~~--~~~~-~~~ilp~ll~~~~D~v-~nVR~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~L~~D~d~dVr~~A~  579 (588)
T d1b3ua_         511 CG--QDIT-TKHMLPTVLRMAGDPV-ANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQ  579 (588)
T ss_dssp             HH--HHHH-HHHTHHHHHHGGGCSC-HHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             cC--hHHH-HHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            11  1122 2356799999998763 35888889999888643322  233445678888998777777664443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.8e-11  Score=126.17  Aligned_cols=338  Identities=14%  Similarity=0.137  Sum_probs=237.8

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--chHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--SCENW  232 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~~~  232 (560)
                      .++.+...++..+..+|..++..|..++..-+..   +.....++.+..+++++++++|..|+..+..++..-  .....
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~  319 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN  319 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhh---hhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4555566667778889999999998887532211   222356889999999999999999999999988753  23333


Q ss_pred             HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (560)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (560)
                      ..-...++.+...+++.++.++..++.++..++..-....  .....++.+..+++++++.++..+...+..+...-+. 
T Consensus       320 ~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-  396 (588)
T d1b3ua_         320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-  396 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-
T ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhH--HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-
Confidence            3445678889999999999999999888887754211111  1123568889999999999999888877766531111 


Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC--ChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhh
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS--NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV  388 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~--~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla  388 (560)
                      ..+ ....++.+..++++.++ .+|..++.++..++..  .+..     .....+.+...+.+  ..+|..|+.+|+.++
T Consensus       397 ~~~-~~~ll~~l~~~~~d~~~-~~r~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~  469 (588)
T d1b3ua_         397 RQL-SQSLLPAIVELAEDAKW-RVRLAIIEYMPLLAGQLGVEFF-----DEKLNSLCMAWLVDHVYAIREAATSNLKKLV  469 (588)
T ss_dssp             HHH-HHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHCGGGC-----CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             hhh-hhHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHcChHhH-----HHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence            111 13467888888888886 8999999999988752  1111     11124556666766  457899999999998


Q ss_pred             ccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585          389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (560)
Q Consensus       389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L  468 (560)
                      ..-..+. ....+++.+..++.+++...+..++.++..+...  ..........+|.|.+++.++.++||..++.+|..+
T Consensus       470 ~~~~~~~-~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~--~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i  546 (588)
T d1b3ua_         470 EKFGKEW-AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI  546 (588)
T ss_dssp             HHHCHHH-HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHhCcHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            6322221 1234788888999899999999999999988743  222233345799999999999999999999999999


Q ss_pred             cCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          469 VTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      ....++.. +.  ....+.+.+++++. +..++.+|..++..|+
T Consensus       547 ~~~~~~~~-~~--~~i~~~l~~L~~D~-d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         547 GPILDNST-LQ--SEVKPILEKLTQDQ-DVDVKYFAQEALTVLS  586 (588)
T ss_dssp             GGGSCHHH-HH--HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred             HHHcCcHh-HH--HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence            75443321 11  12335566666654 4568999999988774

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1e-08  Score=96.81  Aligned_cols=253  Identities=13%  Similarity=0.075  Sum_probs=187.0

Q ss_pred             hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      .......|+..|++.++.+|..|+..|..+.  ++         ..++.|+++++++++.+|..|+.+|+.+........
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc
Confidence            3455778999999999999999999997763  22         357899999999999999999999999976554322


Q ss_pred             HHHhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585          232 WLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (560)
Q Consensus       232 ~l~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (560)
                      .+     ++.+. .++++.++.++..++.+|.++... +.....     .++.+...+.+.++.++..++.++..+..  
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            22     33344 356788999999999999998653 222222     24777888888899999999888876542  


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (560)
Q Consensus       310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl  387 (560)
                              ...++.+..++.+.+. .++..+..++..+.......         .+.+...+.+  ..++..+..+++.+
T Consensus       154 --------~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 --------KATIPLLINLLKDPNG-DVRNWAAFAININKYDNSDI---------RDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSH-HHHHHHHHHHHHHTCCCHHH---------HHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHHHHhcccccc-hhhhhHHHHHHhhhcccccc---------chhhhhhhhhhhhhhhhhhccccchh
Confidence                    4567888888888776 78888888888877665543         3345555554  44667777777666


Q ss_pred             hccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHH
Q 008585          388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAIS  466 (560)
Q Consensus       388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~  466 (560)
                      ..         ...++.|++.+.+  +.++..++.+|+.++.          .+.++.|.+++.. ++.+++..|..+|.
T Consensus       216 ~~---------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         216 KD---------KRVLSVLCDELKK--NTVYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TC---------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             hh---------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            42         3468888888875  4588899999999863          3578999998875 56789999988764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=9.8e-09  Score=97.02  Aligned_cols=253  Identities=14%  Similarity=0.060  Sum_probs=181.1

Q ss_pred             CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHH
Q 008585          195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI  274 (560)
Q Consensus       195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l  274 (560)
                      ....+.|+++|+++++.+|..|+.+|+.+..          ..+++.+++++++.++.++..|+.+|..+..........
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~   87 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV   87 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence            3567889999999999999999999988753          135899999999999999999999999997654433322


Q ss_pred             HhCCChHHHH-HHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585          275 VGHGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (560)
Q Consensus       275 ~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~  353 (560)
                      .     +.+. .+++++++.++..++.+|++++......    ....++.+...+.+.+. .++..++.+++.+..    
T Consensus        88 ~-----~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~-~vr~~a~~~l~~~~~----  153 (276)
T d1oyza_          88 F-----NILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKST-NVRRATAFAISVIND----  153 (276)
T ss_dssp             H-----HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC------
T ss_pred             H-----HHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcch-HHHHHHHHHHhhcch----
Confidence            1     3333 3457789999999999999887532211    12356777777777776 788888888776532    


Q ss_pred             HHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCCh
Q 008585          354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA  431 (560)
Q Consensus       354 ~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~  431 (560)
                             ...++.+..++.+  ..++..+..++..+....       ....+.++..+...+..++..+..++..+..  
T Consensus       154 -------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--  217 (276)
T d1oyza_         154 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--  217 (276)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred             -------HHHHHHHHHhcccccchhhhhHHHHHHhhhccc-------cccchhhhhhhhhhhhhhhhhhccccchhhh--
Confidence                   2345666666655  345555666665554321       1235567777888899999999999887653  


Q ss_pred             hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585          432 EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (560)
Q Consensus       432 ~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L  508 (560)
                              ...++.|++.+.+  +.+|..++.+|..+.           +...++.|..+|.+.++..++.+++..|
T Consensus       218 --------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig-----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         218 --------KRVLSVLCDELKK--NTVYDDIIEAAGELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             --------GGGHHHHHHHHTS--SSCCHHHHHHHHHHC-----------CGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             --------hhhHHHHHHHhCC--hHHHHHHHHHHHHcC-----------CHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                    3468888888864  458899999999884           1235688888887765556787777664

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.6e-09  Score=119.05  Aligned_cols=344  Identities=12%  Similarity=0.068  Sum_probs=214.5

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--chHHHHHh
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--SCENWLVS  235 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~~~l~~  235 (560)
                      .+...+++.+...|..|+.+|..++.+..+....... ..++.|+..++++++.+|..++++|+.++..-  ...... -
T Consensus       399 ~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~  476 (888)
T d1qbkb_         399 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-L  476 (888)
T ss_dssp             HHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-T
T ss_pred             HHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-h
Confidence            3334556778888999999999888655443222221 35788889999999999999999999988632  222222 2


Q ss_pred             CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh--hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC--ch-
Q 008585          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PE-  310 (560)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~-  310 (560)
                      ..+++.++..+.+.++.++..|+++|..+.....  ....+  ...++.++..+...+...+..+..++..++..  +. 
T Consensus       477 ~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~  554 (888)
T d1qbkb_         477 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL  554 (888)
T ss_dssp             TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccc
Confidence            3578889999999999999999999999864211  11000  12346677777766666666666677666531  11 


Q ss_pred             hHHHHHhcCcHHHHHHHhhc--CCchhHHHHHHHHHHHHccCCh-h---HHHHHHhCCCHHHHHH--------hccC---
Q 008585          311 VRQMLAEEGIVSVMIKLLDC--GILLGSKEYAAECLQNLTASNE-N---LRRSVVSEGGIRSLLA--------YLDG---  373 (560)
Q Consensus       311 ~~~~i~e~g~v~~L~~lL~~--~~~~~v~~~a~~~L~~La~~~~-~---~~~~i~~~g~l~~L~~--------ll~~---  373 (560)
                      ....+.+ ..++.+......  .++ ......+.++..++.... .   ....+.+. .+..+..        ....   
T Consensus       555 ~~~~~~~-~l~~~l~~~~~~~~~~~-~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~  631 (888)
T d1qbkb_         555 NKPEYIQ-MLMPPLIQKWNMLKDED-KDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNAQPDQY  631 (888)
T ss_dssp             CSHHHHH-HHHHHHHHHHTTSCTTC-TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTTTS
T ss_pred             cchHHHH-HHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhcccccc
Confidence            1122222 244555554432  122 344556666666654111 1   11111110 0111111        1111   


Q ss_pred             ----CccHHHHHHHHHHhhc--c-ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHH
Q 008585          374 ----PLPQESAVGALRNLVG--S-VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTP  444 (560)
Q Consensus       374 ----~~~~~~a~~~L~nla~--~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~  444 (560)
                          .+....++.++..+..  . .....+....+++.+...+++.++.+++.|..+++.++..  +.....+  ...++
T Consensus       632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~  709 (888)
T d1qbkb_         632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMP  709 (888)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHH
Confidence                2245566777777765  2 2333344556788888999999999999999999998743  3333333  23577


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhcC-CChhhHHHhhhCCChHHHHhccCCCC-chhhHHHHHHHHHHhC
Q 008585          445 LLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPSP-QNTAKKYAVACLASLS  512 (560)
Q Consensus       445 ~Lv~ll~s~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~~~~~~a~~~L~~L~  512 (560)
                      .+.+.+.+....++..|+++++.|+. ..++...++.  ..++.|++.++..+ ...+++.++.+++.|+
T Consensus       710 ~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~  777 (888)
T d1qbkb_         710 ILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLG  777 (888)
T ss_dssp             HHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            78888887888899999999999984 3444454443  45688889997653 3457788888888775

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=9.3e-07  Score=87.69  Aligned_cols=312  Identities=13%  Similarity=0.083  Sum_probs=212.8

Q ss_pred             hHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHH---HHhhCCC--HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585          155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVL---AVMGRSN--IAALVQLLTATSPRIREKTVTVICSLAESGS  228 (560)
Q Consensus       155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~---~i~~~g~--v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (560)
                      .+..++..|. ...++.....+.-+.+++.+++....   .+.....  -.++..++..++.-+...+...+..++....
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            4777788876 45677777777777888876653222   2222222  3456666766667778888888888887653


Q ss_pred             hH----HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh--CCChHHHHHHhcc--C----------
Q 008585          229 CE----NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQT--G----------  290 (560)
Q Consensus       229 ~~----~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~--~g~i~~Lv~ll~~--~----------  290 (560)
                      ..    +.+..  ....+-.+...++...+..++.++..+...++.+..+..  ...++.|+++++.  +          
T Consensus       155 ~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         155 HNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             CCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             cccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            21    22222  223333344567888888899999999999999988865  3457777777753  1          


Q ss_pred             -----ChHHHHHHHHHHHHhcCCchhHHHHHhc--CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh-----HHHHH
Q 008585          291 -----DSVSQAAAACTLKNISAVPEVRQMLAEE--GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-----LRRSV  358 (560)
Q Consensus       291 -----~~~~~~~a~~aL~nLa~~~~~~~~i~e~--g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~-----~~~~i  358 (560)
                           +..++..++-++|-|+.+++....+.+.  +.++.++.+++....+.+.+-++.+|.|+......     ....+
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  312 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL  312 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence                 2367899999999999999999999885  45999999998776668999999999999874321     22334


Q ss_pred             HhCCCHHHHHHhccC-----CccHHHHHHHH--------HHhhc-cccHH----------------HH--------HhC-
Q 008585          359 VSEGGIRSLLAYLDG-----PLPQESAVGAL--------RNLVG-SVSQE----------------VL--------ISL-  399 (560)
Q Consensus       359 ~~~g~l~~L~~ll~~-----~~~~~~a~~~L--------~nla~-~~~~~----------------~l--------~~~-  399 (560)
                      +..+++ ++++.|..     +++. ..+..|        ..++. .....                .+        -+. 
T Consensus       313 v~~~~l-~~l~~L~~r~~~Dedl~-edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~  390 (477)
T d1ho8a_         313 LLGNAL-PTVQSLSERKYSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN  390 (477)
T ss_dssp             HHHCHH-HHHHHHHSSCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred             HHcchh-HHHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccc
Confidence            445544 44555532     2221 111111        11211 11111                11        111 


Q ss_pred             -CcHHHHHHHHh----------cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 008585          400 -GFFPRLVHVLK----------AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (560)
Q Consensus       400 -~~i~~Lv~lL~----------~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~  467 (560)
                       ..+..|+++|.          +.|+.+...||.=|+.++++ |+.+..+-+.|+=..+++++.+++++||..|+.|+..
T Consensus       391 ~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk  470 (477)
T d1ho8a_         391 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA  470 (477)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             34888999996          34678888899999999965 8899999888999999999999999999999999998


Q ss_pred             hcC
Q 008585          468 LVT  470 (560)
Q Consensus       468 L~~  470 (560)
                      +..
T Consensus       471 lm~  473 (477)
T d1ho8a_         471 IIG  473 (477)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=9.5e-08  Score=106.08  Aligned_cols=350  Identities=14%  Similarity=0.107  Sum_probs=208.9

Q ss_pred             chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChH-HHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--hH
Q 008585          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CE  230 (560)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~  230 (560)
                      ..++.++..+.+.++.+|..|+.+|.+++..... ..... -...++.++..+.++++.+++.|+.+|..+.....  ..
T Consensus       436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3466677778888999999999999887742111 11112 23578889998989999999999999999986432  22


Q ss_pred             HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhh-HHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHh
Q 008585          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEM-ARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNI  305 (560)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~-~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nL  305 (560)
                      ..+  ...++.++..+.......+..+..++..++..  +.. ...+. ...++.+......  .+.........++..+
T Consensus       515 p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i  591 (888)
T d1qbkb_         515 PYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSV  591 (888)
T ss_dssp             GGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHH
T ss_pred             hHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            111  22567777888877777777777777766431  110 11111 1123444444432  1222223344445444


Q ss_pred             cC--CchhHHHHHh--cCcHHHHHHHh--------h----cCCchhHHHHHHHHHHHHccCC-hhHHHHHHhCCCHHHHH
Q 008585          306 SA--VPEVRQMLAE--EGIVSVMIKLL--------D----CGILLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLL  368 (560)
Q Consensus       306 a~--~~~~~~~i~e--~g~v~~L~~lL--------~----~~~~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~  368 (560)
                      ..  .+........  ..++..+...+        .    ...+.+....++.++..++..- +.....+.....++.+.
T Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~  671 (888)
T d1qbkb_         592 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY  671 (888)
T ss_dssp             HHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHH
T ss_pred             HHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHH
Confidence            32  1122111111  11122221111        1    1111256667777777776521 22233444455677777


Q ss_pred             HhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCC
Q 008585          369 AYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGC  442 (560)
Q Consensus       369 ~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~  442 (560)
                      ..+.+  +.++..+..+++.++.  ....... -..+++.+...|++....++..|+++++.++..  ++...++  ...
T Consensus       672 ~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~-l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~~i  748 (888)
T d1qbkb_         672 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMV  748 (888)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--HHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHH
Confidence            77766  5688999999988886  1111101 123567777777778889999999999999843  4444444  346


Q ss_pred             HHHHHHHHccC--CHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585          443 TPLLIKLLEAK--PNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (560)
Q Consensus       443 i~~Lv~ll~s~--~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~  512 (560)
                      ++.|+.++...  +..+++.++.+|+.|+.. +......+.  ..++.++..|....++..+..+...++.+.
T Consensus       749 l~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~--~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i  819 (888)
T d1qbkb_         749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ--QFIRPWCTSLRNIRDNEEKDSAFRGICTMI  819 (888)
T ss_dssp             HHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG--GTHHHHHHHHTTSCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH--HHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence            88889999753  355889999999999854 333333342  466777777766544456778888887665

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.1e-08  Score=109.98  Aligned_cols=344  Identities=14%  Similarity=0.115  Sum_probs=212.2

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (560)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (560)
                      .|..++..+.+.|++.|..|+..|.+....+.-....-.....++.|+++|++.++++|..|+++|+.++..-... .+ 
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~-~~-   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QV-   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HH-
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh-hH-
Confidence            4678888999999999999999888876432100000001135788999999999999999999999998764421 11 


Q ss_pred             hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-h-hh----HHHHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhcC
Q 008585          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-A-EM----ARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~-~~----~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~  307 (560)
                       ...++.|+..+.+++...+..+..+|..+... + ..    .........++.+...+. ..++.++..++.+|..+..
T Consensus        82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence             23577788878788888888888887766321 1 10    011111122344444443 3567888899988888753


Q ss_pred             -Cc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-C--CccHHHHHH
Q 008585          308 -VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAVG  382 (560)
Q Consensus       308 -~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-~--~~~~~~a~~  382 (560)
                       .+ .....  ...+++.++..+.++.. .+|..|+.+|+.++...+..   . -...++.++..+. +  ...+..++.
T Consensus       161 ~~g~~l~~~--~~~il~~l~~~l~~~~~-~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         161 RQGGLLVNF--HPSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HTCSSCTTT--HHHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HhhHhhHHH--HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHH
Confidence             11 11111  12356777777888876 89999999999998744321   1 1223566666553 2  455666777


Q ss_pred             HHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHH---Hhc--C------------
Q 008585          383 ALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLV---GEA--G------------  441 (560)
Q Consensus       383 ~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i---~~~--g------------  441 (560)
                      +++.++..... .+  .-..+++.++..+...++++++.+..++..++..  .+....+   ...  .            
T Consensus       234 ~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~  312 (1207)
T d1u6gc_         234 CIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD  312 (1207)
T ss_dssp             HHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred             HHHHHHHHcch-hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhh
Confidence            88888761111 11  1246788999999999999999999999988743  1111111   000  0            


Q ss_pred             ------------------CHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-hhhHHHhhhCCChHHHHhccCCCCchhhHH
Q 008585          442 ------------------CTPLLIKLLEAKPNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQNTAKK  502 (560)
Q Consensus       442 ------------------~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~  502 (560)
                                        ..+....-....+..+|..++.+|..+.... +....++  ...++.++..+.+.+ +.++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~--~~~~~~L~~~l~d~~-~~vr~  389 (1207)
T d1u6gc_         313 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKERE-ENVKA  389 (1207)
T ss_dssp             -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSS-SHHHH
T ss_pred             HHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHhcCCc-hHHHH
Confidence                              0001111112344568999999999998543 3334444  367788998887654 34677


Q ss_pred             HHHHHHHHhC
Q 008585          503 YAVACLASLS  512 (560)
Q Consensus       503 ~a~~~L~~L~  512 (560)
                      .++.++..+.
T Consensus       390 ~~~~~l~~l~  399 (1207)
T d1u6gc_         390 DVFHAYLSLL  399 (1207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777665543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.2e-06  Score=88.08  Aligned_cols=270  Identities=19%  Similarity=0.132  Sum_probs=172.1

Q ss_pred             CCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChh-
Q 008585          196 SNIAALVQLLTAT--SPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAE-  269 (560)
Q Consensus       196 g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~-  269 (560)
                      +.++.+++.+.++  +...++.++.++..+..... ....-.....++.++..+.+.  +..++..+..++..+..... 
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            5688888888664  47788889999988876432 111111123567777777654  67899999999998876422 


Q ss_pred             hH-HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585          270 MA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL  347 (560)
Q Consensus       270 ~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L  347 (560)
                      .. .........+.+...+.+++++++..++.+|..++. .++.-.........+.+.....+.++ .++..++..+..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSH-HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHH
Confidence            11 122223345677778888999999999999999874 22221111222334445555666665 8899999998888


Q ss_pred             ccCChhHHHHHHh--------------------CCCHHHHHHhccC---------CccHHHHHHHHHHhhccccHHHHHh
Q 008585          348 TASNENLRRSVVS--------------------EGGIRSLLAYLDG---------PLPQESAVGALRNLVGSVSQEVLIS  398 (560)
Q Consensus       348 a~~~~~~~~~i~~--------------------~g~l~~L~~ll~~---------~~~~~~a~~~L~nla~~~~~~~l~~  398 (560)
                      +...........+                    ....+.+...+.+         ..++..+..++..++.....+ +. 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~-  363 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IV-  363 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HH-
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hh-
Confidence            7421111000000                    0112233333321         236777888888887611111 11 


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhH-HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585          399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEM-KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (560)
Q Consensus       399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~-~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~  470 (560)
                      ..+++.+...+++++..++..|+.+|+.++..  .+. ...+  ...++.++.++.++++.+|..|+++|+.++.
T Consensus       364 ~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         364 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            23466677778888999999999999999854  222 2222  3578999999999999999999999999973

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.5e-06  Score=99.16  Aligned_cols=335  Identities=15%  Similarity=0.141  Sum_probs=202.7

Q ss_pred             hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHH-HHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKN-VLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (560)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~-~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (560)
                      ...++.+...+...+...+..++..|..++...... ..... ...++.+..++++.+..++..++.++..+....+...
T Consensus       646 ~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~-~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~  724 (1207)
T d1u6gc_         646 GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI-DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL  724 (1207)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHH-HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGG
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHH-hhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhh
Confidence            445667777788889999999999998887653211 01111 1223445566777889999999999999987665333


Q ss_pred             HHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhC---ChhhHHHHH----h--------------------------
Q 008585          232 WLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSM---SAEMARAIV----G--------------------------  276 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~---~~~~~~~l~----~--------------------------  276 (560)
                      .-.....++.++..+.+.  ...........+..+..   +......+.    .                          
T Consensus       725 ~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~  804 (1207)
T d1u6gc_         725 SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT  804 (1207)
T ss_dssp             GGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHH
Confidence            334556788888888765  22222222223333221   111111110    0                          


Q ss_pred             ----CCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585          277 ----HGGVRPLIEICQT-----GDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (560)
Q Consensus       277 ----~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~  345 (560)
                          ......+..++..     ..+..+..++.+|..+...  ....     ......++..+.++++ +++..|..+|+
T Consensus       805 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~-----~~l~~~l~~~l~~~~~-~vr~aAa~aLg  878 (1207)
T d1u6gc_         805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ-----LELKSVILEAFSSPSE-EVKSAASYALG  878 (1207)
T ss_dssp             HHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSC-----THHHHHHHHGGGCSCH-HHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence                0000111111110     1234555566666555321  0100     1245667778888876 89999999999


Q ss_pred             HHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHHHhhcc---ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 008585          346 NLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVGS---VSQEVLISLGFFPRLVHVLKAGSLGAQQAAA  421 (560)
Q Consensus       346 ~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~nla~~---~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~  421 (560)
                      +++..+....        ++.+++.+++ +..+...+.++..+...   ...... ...+++.|+..+.+.+..++..++
T Consensus       879 ~l~~~~~~~~--------lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~-~~~i~~~L~~~~~~~~~~vr~~~a  949 (1207)
T d1u6gc_         879 SISVGNLPEY--------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY-VENIWALLLKHCECAEEGTRNVVA  949 (1207)
T ss_dssp             HHHHHTHHHH--------HHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHH-HHHHHHHHTTCCCCSSTTHHHHHH
T ss_pred             HHHHhhHHHH--------hHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHH-HHHHHHHHHHHhCCCcHHHHHHHH
Confidence            9987654322        5667777755 56666666666665431   111111 112334444445566788999999


Q ss_pred             HHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChh-hHHHhhhCCChHHHHhccCCCCchh
Q 008585          422 SALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN-CREVKRDDKSVPNLVQLLDPSPQNT  499 (560)
Q Consensus       422 ~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~-~~~~~~~~~~v~~Lv~lL~~~~~~~  499 (560)
                      .+++.|+.. +        ...+|.|...+.++++.+|..++.++.++..+.+. ...++.  ..++.++..|.+++ ..
T Consensus       950 ~~lg~L~~~~~--------~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~--~li~~ll~~l~d~~-~~ 1018 (1207)
T d1u6gc_         950 ECLGKLTLIDP--------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK--NCIGDFLKTLEDPD-LN 1018 (1207)
T ss_dssp             HHHHHHHHSSG--------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH--HHSTTTHHHHSSSS-TH
T ss_pred             HHHHHHHhcCH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH--HHHHHHHHHhCCCC-HH
Confidence            999999733 3        24688999999999999999999999998865433 344443  34567777887763 46


Q ss_pred             hHHHHHHHHHHhCCC
Q 008585          500 AKKYAVACLASLSPS  514 (560)
Q Consensus       500 ~~~~a~~~L~~L~~~  514 (560)
                      ++..++.+|..++++
T Consensus      1019 vR~~al~~l~~~~~~ 1033 (1207)
T d1u6gc_        1019 VRRVALVTFNSAAHN 1033 (1207)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            899999999988753

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=7.4e-06  Score=81.98  Aligned_cols=270  Identities=14%  Similarity=0.109  Sum_probs=166.4

Q ss_pred             hHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCch-
Q 008585          155 NTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGSC-  229 (560)
Q Consensus       155 ~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~~-  229 (560)
                      .++.++..+.++  +...+..++..+..+................++.++..+.++  +.+++..++.++..+...... 
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  207 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  207 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence            467777777653  455666777888777654332211111123467777777654  478999999999999865431 


Q ss_pred             -HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          230 -ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       230 -~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                       ..........+.+...+.+.++.++..++.+|..+... ++.-.........+.+.....+.++.++..++..+..++.
T Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         208 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence             11222223566777788889999999999999998653 2221111112222344555667788888888888877753


Q ss_pred             CchhH---------------------HHHHhcCcHHHHHHHhhc------CCchhHHHHHHHHHHHHccCCh-hHHHHHH
Q 008585          308 VPEVR---------------------QMLAEEGIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNE-NLRRSVV  359 (560)
Q Consensus       308 ~~~~~---------------------~~i~e~g~v~~L~~lL~~------~~~~~v~~~a~~~L~~La~~~~-~~~~~i~  359 (560)
                      .....                     ........++.+...+.+      .+...++..+..++..++...+ .....  
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--  365 (458)
T d1ibrb_         288 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH--  365 (458)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH--
T ss_pred             HHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH--
Confidence            21000                     001112234444454432      1112578888888888876322 11111  


Q ss_pred             hCCCHHHHHHhccCC--ccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585          360 SEGGIRSLLAYLDGP--LPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (560)
Q Consensus       360 ~~g~l~~L~~ll~~~--~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~  429 (560)
                         .++.+.+.+.++  ..++.++.+|+.++.....+.+  .-..+++.++..+++.++.||..|+++|++++.
T Consensus       366 ---l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         366 ---VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             ---HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence               245566666664  5788899999999862111111  124578999999999999999999999999974

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=3.2e-05  Score=76.47  Aligned_cols=265  Identities=13%  Similarity=0.093  Sum_probs=172.2

Q ss_pred             HHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh--CC
Q 008585          161 ARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS--EG  237 (560)
Q Consensus       161 ~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~--~g  237 (560)
                      ..+..++.-....+...+..++.....+....- .......+-.+.+.++.+.+..++.++..+...+++|..+..  ..
T Consensus       129 ~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~  208 (477)
T d1ho8a_         129 VSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKK  208 (477)
T ss_dssp             HCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHH
T ss_pred             HhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccc
Confidence            334445555555555555555554333222110 001233444444677788999999999999999999988754  34


Q ss_pred             CHHHHHHhhhc-----------------CCHHHHHHHHHHHHHhhCChhhHHHHHhCC--ChHHHHHHhcc-CChHHHHH
Q 008585          238 VLPPLIRLVES-----------------GSTVGKEKATISLQRLSMSAEMARAIVGHG--GVRPLIEICQT-GDSVSQAA  297 (560)
Q Consensus       238 ~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~La~~~~~~~~l~~~g--~i~~Lv~ll~~-~~~~~~~~  297 (560)
                      .+++++++|+.                 .+...+.+++-|++-|+.+++....+.+..  .++.|+.+++. ....+.+.
T Consensus       209 ~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv  288 (477)
T d1ho8a_         209 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRL  288 (477)
T ss_dssp             HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             hHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence            56777777653                 134678899999999999999888888764  48889988864 66788899


Q ss_pred             HHHHHHHhcCCc--h----hHHHHHhcCcHHHHHHHhhcCC--chhHHHHHHHHH--------HHHccCChhHHHH----
Q 008585          298 AACTLKNISAVP--E----VRQMLAEEGIVSVMIKLLDCGI--LLGSKEYAAECL--------QNLTASNENLRRS----  357 (560)
Q Consensus       298 a~~aL~nLa~~~--~----~~~~i~e~g~v~~L~~lL~~~~--~~~v~~~a~~~L--------~~La~~~~~~~~~----  357 (560)
                      ++.+|.|+...+  .    ....++..++++.+ ..|....  +.++.+ -+..|        ..+++- +.....    
T Consensus       289 ~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l-~~L~~r~~~Dedl~e-dl~~L~~~L~~~~k~lTsf-d~Y~~Ev~Sg  365 (477)
T d1ho8a_         289 CISIILQCCSTRVKQHKKVIKQLLLLGNALPTV-QSLSERKYSDEELRQ-DISNLKEILENEYQELTSF-DEYVAELDSK  365 (477)
T ss_dssp             HHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHH-HHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHH-HHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHH-HHHhcCCCCCHHHHH-HHHHHHHHHHHHHHhcCcH-HHHHHHHhcC
Confidence            999999998642  1    23445566776665 4444321  112222 12222        112211 111111    


Q ss_pred             ------------HHhC----------CCHHHHHHhccC------------CccHHHHHHHHHHhhc--cccHHHHHhCCc
Q 008585          358 ------------VVSE----------GGIRSLLAYLDG------------PLPQESAVGALRNLVG--SVSQEVLISLGF  401 (560)
Q Consensus       358 ------------i~~~----------g~l~~L~~ll~~------------~~~~~~a~~~L~nla~--~~~~~~l~~~~~  401 (560)
                                  +-+.          ..+..|+++|++            +.+...|+.=|+.+++  |..+..+-+.|+
T Consensus       366 ~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~  445 (477)
T d1ho8a_         366 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG  445 (477)
T ss_dssp             CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred             CCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCc
Confidence                        1111          137778888851            3356678888999998  777888878899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585          402 FPRLVHVLKAGSLGAQQAAASALCRVC  428 (560)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~La  428 (560)
                      =..++.+|.++|++|+.+|+.++..+-
T Consensus       446 K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         446 KADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999998764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=0.00042  Score=74.59  Aligned_cols=305  Identities=14%  Similarity=0.088  Sum_probs=181.6

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchH-HHH
Q 008585          157 RELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCE-NWL  233 (560)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~-~~l  233 (560)
                      ..++..+.+.++..+..++..+..++..+ +.+.    =...++.|++.+.+++ ..++..|+.+|..++...... ..+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34566777888888888888888887532 1100    0024677777777655 678888999999997653311 111


Q ss_pred             Hh--CCCHHHHHHhhh--cCCHHHHHHHHHHHHHhhCC-hhhH-HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          234 VS--EGVLPPLIRLVE--SGSTVGKEKATISLQRLSMS-AEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       234 ~~--~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~La~~-~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                      ..  ...+..+++.+.  ..+..++..+..++.++... .++. ........++.+...+.++++.++..++.++..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            11  112344444443  34678999999999888553 2211 111122345777888889999999999999998875


Q ss_pred             -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCC----------------CHHHHHHh
Q 008585          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG----------------GIRSLLAY  370 (560)
Q Consensus       308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g----------------~l~~L~~l  370 (560)
                       .++.-......-....+....++.++ .++..++..+..++..............                .++.+...
T Consensus       254 ~~~~~~~~~l~~~l~~l~~~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~  332 (861)
T d2bpta1         254 KYYTFMKPYMEQALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL  332 (861)
T ss_dssp             HHGGGCHHHHHHTHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             22222222222222233344445554 8999999988888753222111111111                13334444


Q ss_pred             ccC---------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHh
Q 008585          371 LDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGE  439 (560)
Q Consensus       371 l~~---------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~  439 (560)
                      +..         ...+..+..++..++...... + -.-..+.+...+.+.+...+..+..+++.++..  ......+. 
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l-  409 (861)
T d2bpta1         333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-I-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-  409 (861)
T ss_dssp             TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-G-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             HHHhhccccchhHHHHHHHHHHHHHHHhhcchh-h-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH-
Confidence            422         124556666666665410000 0 011233444455667889999999999999864  33333322 


Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          440 AGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       440 ~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ...++.++..+.+.++.+|..+++++..++
T Consensus       410 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         410 HQALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcchhhhhHHHHHHHHHH
Confidence            246889999999999999999999999887

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.06  E-value=3.8e-07  Score=73.50  Aligned_cols=109  Identities=18%  Similarity=0.290  Sum_probs=86.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH
Q 008585          205 LTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI  284 (560)
Q Consensus       205 L~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv  284 (560)
                      |+++++.+|..|+.+|+.+.           ...++.|++.|+++++.+|..++++|.++..          .+.++.|+
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~   59 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLI   59 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHH
Confidence            34556677777777776543           2368899999999999999999999987642          12358899


Q ss_pred             HHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585          285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (560)
Q Consensus       285 ~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~  345 (560)
                      .++.++++.+|..++.+|..+..          .+.++.+..+++++++ .++..|+.+|.
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~-~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG-FARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT-HHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence            99999999999999999987743          3468888899998887 89999988763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.00031  Score=75.97  Aligned_cols=310  Identities=16%  Similarity=0.113  Sum_probs=182.4

Q ss_pred             hHHHHHHHHccCC--HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCchH
Q 008585          155 NTRELLARLQIGH--LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGSCE  230 (560)
Q Consensus       155 ~i~~Ll~~L~~~~--~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~~~  230 (560)
                      .++.++..+.+++  ...+..++..|..++.+-......-.....++.+++.+.++  +..++..++.++..........
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  208 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh
Confidence            4777777776544  56677888888888764322111111123567778877654  4789999999998876643211


Q ss_pred             --HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          231 --NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       231 --~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                        ......-.++.+...+.+.++.++..++.+|..+... ++.............+.....+..+.++..+...+..++.
T Consensus       209 ~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence              1111112456677778888999999999999999653 4433333334444556666777778888777776666653


Q ss_pred             Cc-hhH--------------------HHHHhcCcHHHHHHHhhcC------CchhHHHHHHHHHHHHccCChhHHHHHHh
Q 008585          308 VP-EVR--------------------QMLAEEGIVSVMIKLLDCG------ILLGSKEYAAECLQNLTASNENLRRSVVS  360 (560)
Q Consensus       308 ~~-~~~--------------------~~i~e~g~v~~L~~lL~~~------~~~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (560)
                      .. ...                    ........++.+...+...      +...++..+..++..++......   ++ 
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-  364 (876)
T d1qgra_         289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-  364 (876)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred             HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hh-
Confidence            11 100                    0011122344444444321      11147777888887776522210   00 


Q ss_pred             CCCHHHHHHhccCC--ccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hh-HH
Q 008585          361 EGGIRSLLAYLDGP--LPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE-MK  434 (560)
Q Consensus       361 ~g~l~~L~~ll~~~--~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~-~~  434 (560)
                      ...++.+.+.+.++  ..++.++.+++.+........+  ....+++.++..+.+.++.++..++++++.++.. +. ..
T Consensus       365 ~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T d1qgra_         365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhh
Confidence            00123334444443  4567788888888762222222  2245688888999999999999999999999843 11 10


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       435 ~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ....-...++.+...+. .++.++..++.++.++.
T Consensus       445 ~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         445 NDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             STTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             hHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            00000122445555554 46788999999998886

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=4.7e-05  Score=82.42  Aligned_cols=259  Identities=13%  Similarity=0.095  Sum_probs=161.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhh--HHHH
Q 008585          199 AALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEM--ARAI  274 (560)
Q Consensus       199 ~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~--~~~l  274 (560)
                      +.|...+.++|+.+|..|-..|..+..++.       .+.+..+.+++.+.  +..+|..|+..|.+.......  ....
T Consensus         8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1           8 QLLENSILSPDQNIRLTSETQLKKLSNDNF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            345555667889999999999988765432       13567788888654  567888888888887442111  0000


Q ss_pred             ----H-------hCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHH
Q 008585          275 ----V-------GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAA  341 (560)
Q Consensus       275 ----~-------~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~  341 (560)
                          .       ....-..++..+.++++.++..++.++..++..+  ++.    -...++.++..+.++++..++..++
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~~~al  156 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASL  156 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                0       0112255677778889999999999998886421  110    0135677777777766546788899


Q ss_pred             HHHHHHccCChhHHHHHHh--CCCHHHHHHhccC----CccHHHHHHHHHHhhcc--ccH-HHHHhCCcHHHHHHHHhcC
Q 008585          342 ECLQNLTASNENLRRSVVS--EGGIRSLLAYLDG----PLPQESAVGALRNLVGS--VSQ-EVLISLGFFPRLVHVLKAG  412 (560)
Q Consensus       342 ~~L~~La~~~~~~~~~i~~--~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~--~~~-~~l~~~~~i~~Lv~lL~~~  412 (560)
                      .+|..++...+...+.+..  ...+..++..+.+    ..++..++.++.++...  ... .......+++.+...++++
T Consensus       157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (861)
T d2bpta1         157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE  236 (861)
T ss_dssp             HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC
Confidence            9999987532211111110  1123334443332    35788899999888761  111 0111233567777888889


Q ss_pred             CHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585          413 SLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (560)
Q Consensus       413 ~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~  469 (560)
                      ++.++..+..++..++..  ......+.+ -....+....++.++.++..+...+..++
T Consensus       237 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~  294 (861)
T d2bpta1         237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTIC  294 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            999999999999999843  222333321 12233344556778889988888887765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.65  E-value=4.4e-05  Score=60.80  Aligned_cols=88  Identities=23%  Similarity=0.323  Sum_probs=74.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (560)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~  275 (560)
                      ..++.|++.|+++++.+|..|+.+|+.+..          .+.++.|+.+|++.++.+|..++++|..+..         
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~---------   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------
Confidence            468889999999999999999999987642          2357899999999999999999999998843         


Q ss_pred             hCCChHHHHHHhccCChHHHHHHHHHHH
Q 008585          276 GHGGVRPLIEICQTGDSVSQAAAACTLK  303 (560)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  303 (560)
                       ...++.|..+++++++.+|..|+.+|.
T Consensus        83 -~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 -ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             123577888999999999999998874

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.0014  Score=70.56  Aligned_cols=339  Identities=17%  Similarity=0.104  Sum_probs=197.9

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh-h--CCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchHHH
Q 008585          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM-G--RSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCENW  232 (560)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~-~--~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~~  232 (560)
                      .++..+.+.+ ..+..++..+..++..+      +- +  .+.++.|.+.+.+++  ..+++.++.+|..++.+-.....
T Consensus        94 ~ll~~l~~~~-~~~~~~a~~i~~i~~~~------~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~  166 (876)
T d1qgra_          94 YVLHTLGTET-YRPSSASQCVAGIACAE------IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (876)
T ss_dssp             HHHHHTTTCC-SSSCHHHHHHHHHHHHH------GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHhcCCc-HHHHHHHHHHHHHHHHH------CCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence            4555565544 34445666777766421      11 1  256888888887654  77888999999998764321111


Q ss_pred             -HHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCC-hhhH-HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585          233 -LVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMS-AEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (560)
Q Consensus       233 -l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~-~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (560)
                       -....+++.+++.+.+.  +..++..+..++.+.... .... ......-.++.+...+.++++.++..++.+|..+..
T Consensus       167 ~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~  246 (876)
T d1qgra_         167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  246 (876)
T ss_dssp             GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence             11123577788888654  567888888888777442 2111 111112234667777788899999999999998874


Q ss_pred             -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH----HHHHh----------------CCCHHH
Q 008585          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR----RSVVS----------------EGGIRS  366 (560)
Q Consensus       308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~----~~i~~----------------~g~l~~  366 (560)
                       .++.-.........+.+.....+..+ .++..++..+..++.......    ....+                ...++.
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (876)
T d1qgra_         247 LYYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (876)
T ss_dssp             HSGGGCHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence             34333333334455566666666665 788888888777765221111    00000                011223


Q ss_pred             HHHhccC---------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHH
Q 008585          367 LLAYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKK  435 (560)
Q Consensus       367 L~~ll~~---------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~  435 (560)
                      +...+..         ..++..+..++..++...... + -..+++.+...+.+.+...+..+..+++.+...  .+...
T Consensus       326 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~  403 (876)
T d1qgra_         326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-I-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK  403 (876)
T ss_dssp             HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-G-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred             hHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh-h-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            3333321         235677777777776511000 0 011344555566678889999999999998754  22222


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhh---HHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHh
Q 008585          436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL  511 (560)
Q Consensus       436 ~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~---~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L  511 (560)
                      ... ...++.+...+.+.++.+|..+++++..++....+.   ..++.  ..++.+...+++.  ..+...++.++.++
T Consensus       404 ~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~--~~v~~~~~~~l~~l  477 (876)
T d1qgra_         404 PLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA--PLLQCLIEGLSAE--PRVASNVCWAFSSL  477 (876)
T ss_dssp             HHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH--HHHHHHHHHTTSC--HHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhh--hHHHHHHHHhcCC--HHHHHHHHHHHHHH
Confidence            221 345889999999999999999999999997432211   11111  2235555666553  23455555555444

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.072  Score=48.91  Aligned_cols=220  Identities=13%  Similarity=0.119  Sum_probs=163.4

Q ss_pred             HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH----HHHHh-CCCHHHHHHhccCCccHHHHHHHHHHh
Q 008585          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR----RSVVS-EGGIRSLLAYLDGPLPQESAVGALRNL  387 (560)
Q Consensus       313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~----~~i~~-~g~l~~L~~ll~~~~~~~~a~~~L~nl  387 (560)
                      ..+..++.+..++.-|..=+- +.|..+..+..++-....+.+    +++.. ...+..|+...+++++-..+-..|+.+
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~f-E~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDF-EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH-HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCC-chhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            445557888888888887775 788999999998877433322    44553 345666777777899999999999999


Q ss_pred             hc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh-CChhHHHHHHhcC---CHHHHHHHHccCCHHHHHHHH
Q 008585          388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREVAA  462 (560)
Q Consensus       388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g---~i~~Lv~ll~s~~~~v~~~A~  462 (560)
                      .. ......+.....+..+.++++.++-++...|..++..+- +++.....+...+   +...+.+++.+++--+|..+.
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            98 456677778888999999999999999999999999865 6666655555544   667778899999999999999


Q ss_pred             HHHHHhcCCChhhHH---HhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC----hhhHHHHHH--cChhHHHHHh
Q 008585          463 QAISSLVTLPQNCRE---VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS----KKCKKLMIS--YGAIGYLKKL  533 (560)
Q Consensus       463 ~aL~~L~~~~~~~~~---~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~----~~~r~~i~~--~g~i~~L~~L  533 (560)
                      ..|+.+..+..|...   ++.+...+..++.+|.+.. ..++-.|..++--..-+    +...+.+..  ...+.+|.+.
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s-k~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f  300 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  300 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch-hhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhC
Confidence            999999988888654   4555667788889999874 34666777777655432    234444443  3456677766


Q ss_pred             h
Q 008585          534 S  534 (560)
Q Consensus       534 ~  534 (560)
                      .
T Consensus       301 ~  301 (330)
T d1upka_         301 Q  301 (330)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.81  E-value=0.0038  Score=56.07  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHH-----HHHhcCCc--hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHH-----HHHhh
Q 008585          198 IAALVQLLTATSPRIREKTVTVI-----CSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKEKATIS-----LQRLS  265 (560)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L-----~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~-----L~~La  265 (560)
                      +..|..+++++++.||..++..|     ..+..+++  .|......-..+.|..+++++++.++..++..     |..+.
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~  147 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM  147 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence            44445555555555555554332     12222222  22222222224556666777777777766543     22333


Q ss_pred             CC--hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585          266 MS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (560)
Q Consensus       266 ~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (560)
                      .+  ++.+..+...-+.+.|..+++++++.++..++..
T Consensus       148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         148 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            32  2233344444445556666666666666666544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.14  Score=46.90  Aligned_cols=242  Identities=12%  Similarity=0.143  Sum_probs=166.5

Q ss_pred             HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hh----hHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHh
Q 008585          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AE----MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNI  305 (560)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~----~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL  305 (560)
                      .+...+.+..|+..|..-+.+.|..++.+..++-.. .+    ....+..+  -..|..+++. +++++-..+-..|+..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            455677889999999999999999999999998553 22    22344432  2334444443 4667777778889999


Q ss_pred             cCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHH
Q 008585          306 SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALR  385 (560)
Q Consensus       306 a~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~  385 (560)
                      ..++..++.+.....+..+++++..++- ++...|..++..+-..++......+.                         
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~F-diasDAf~TfkelLt~hk~~~aefl~-------------------------  195 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTF-DIASDAFATFKDLLTRHKLLSAEFLE-------------------------  195 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSH-HHHHHHHHHHHHHHHSSHHHHHHHHH-------------------------
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhCHHHHHHHHH-------------------------
Confidence            9999999999999899999999998886 88888999888887765543221111                         


Q ss_pred             HhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHH----HhcCCHHHHHHHHccCCHHHHHHH
Q 008585          386 NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLV----GEAGCTPLLIKLLEAKPNSVREVA  461 (560)
Q Consensus       386 nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i----~~~g~i~~Lv~ll~s~~~~v~~~A  461 (560)
                           .+-     ..+...+-.+|.+++.-+++.+...|+.+-.+..+...|    .+..-+..++.++.+++..+|..|
T Consensus       196 -----~Ny-----d~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EA  265 (330)
T d1upka_         196 -----QHY-----DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEA  265 (330)
T ss_dssp             -----HTH-----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             -----HhH-----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHh
Confidence                 011     125666778899999999999999999998665544433    334568899999999999999999


Q ss_pred             HHHHHHhcCCCh---hhHHHhhhC--CChHHHHhccCCC-Cc---hhhHHHHHHHHHHh
Q 008585          462 AQAISSLVTLPQ---NCREVKRDD--KSVPNLVQLLDPS-PQ---NTAKKYAVACLASL  511 (560)
Q Consensus       462 ~~aL~~L~~~~~---~~~~~~~~~--~~v~~Lv~lL~~~-~~---~~~~~~a~~~L~~L  511 (560)
                      -.+..-...++.   ....++..+  +.+..|-....+. ++   ..-|.+.+.-+..|
T Consensus       266 FhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~~~DeqF~~EK~~lI~~I~~L  324 (330)
T d1upka_         266 FHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             hhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHHHhC
Confidence            999888875543   233333321  2223333333232 21   23466666666555

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.88  E-value=0.0057  Score=54.87  Aligned_cols=63  Identities=19%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHH-----HHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHH
Q 008585          279 GVRPLIEICQTGDSVSQAAAACTL-----KNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAE  342 (560)
Q Consensus       279 ~i~~Lv~ll~~~~~~~~~~a~~aL-----~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~  342 (560)
                      .+..|..+++++++.+|..++..|     ..+..  +.+++....+.-..+.|..++.+++. .|+..++.
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~-~VR~~aa~  136 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDY-LVRAYVVQ  136 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSH-HHHHHHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCH-HHHHHHHh
Confidence            345566667777777776666443     12221  11333333332223445555555554 56555543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.89  E-value=1.6  Score=40.55  Aligned_cols=196  Identities=12%  Similarity=0.111  Sum_probs=109.5

Q ss_pred             CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC------CccHHHHHHHHHHhhc---
Q 008585          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVG---  389 (560)
Q Consensus       319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~~a~~~L~nla~---  389 (560)
                      .++..+.+++.++.- . ...+...|..+........+      .+..+..++++      +.++..+.-+++++..   
T Consensus        88 ~a~~~i~~~I~~~~l-s-~~ea~~~l~~l~~~~~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          88 EALLFLKRTLASEQL-T-SAEATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC-C-HHHHHHHHHHHhccCCCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            366777787876653 2 22344444444431111111      14556666654      3455677777777765   


Q ss_pred             ---cccHHHHHhCCcHHHHHHH----HhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-------CCH
Q 008585          390 ---SVSQEVLISLGFFPRLVHV----LKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-------KPN  455 (560)
Q Consensus       390 ---~~~~~~l~~~~~i~~Lv~l----L~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-------~~~  455 (560)
                         +.+.     ..+++.+...    ...++.+-+..++.+|+|+...          +.++.|...+..       .+.
T Consensus       160 ~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~i~~l~~~l~~~~~~~~~~~~  224 (336)
T d1lsha1         160 ANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYST  224 (336)
T ss_dssp             TTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCH
T ss_pred             cCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCH----------hHHHHHHHHhcccccccccccH
Confidence               1222     2234444444    4456777788899999999742          346666666643       246


Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhcc-CCCCchhhHHHHHHHHHHhCCChhhHHHH-----------HH
Q 008585          456 SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLL-DPSPQNTAKKYAVACLASLSPSKKCKKLM-----------IS  523 (560)
Q Consensus       456 ~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~~~~~~a~~~L~~L~~~~~~r~~i-----------~~  523 (560)
                      .+|..|.++|..++...+....        +.+.++. +...+.+++..|+.++...-.+...-..|           +.
T Consensus       225 ~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~i~~~l~~E~~~QV~  296 (336)
T d1lsha1         225 RVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVA  296 (336)
T ss_dssp             HHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCcHHHHH
Confidence            7999999999999765432111        3333333 33344467777777666543232221222           11


Q ss_pred             cChhHHHHHhhccCchhHHHHH
Q 008585          524 YGAIGYLKKLSEMDIPGARKLL  545 (560)
Q Consensus       524 ~g~i~~L~~L~~~~~~~akkl~  545 (560)
                      .=...+|..+.+.+.|+-+++.
T Consensus       297 sfv~S~l~~la~s~~P~~~~la  318 (336)
T d1lsha1         297 SFVYSQMRSLSRSSNPEFRDVA  318 (336)
T ss_dssp             HHHHHHHHHHTTCCSGGGHHHH
T ss_pred             HHHHHHHHHHHhCCCcchHHHH
Confidence            2234578889998888655444

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.95  E-value=3.5  Score=38.06  Aligned_cols=195  Identities=15%  Similarity=0.092  Sum_probs=110.6

Q ss_pred             CHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhcc----CChHHHHHHHHHHHHhcC----C
Q 008585          238 VLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNISA----V  308 (560)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~----~  308 (560)
                      .+..+.+.+.++..... .+...+..+... .+....+      ..+.+++.+    .++.++..+.-+++++..    .
T Consensus        89 a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~l------~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~  161 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESL------SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN  161 (336)
T ss_dssp             HHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHH------HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHHH------HHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC
Confidence            34555666655533222 233344444332 2333322      555566653    467777777777776642    2


Q ss_pred             chhHHHHHhcCcHHHHHHH----hhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---------Cc
Q 008585          309 PEVRQMLAEEGIVSVMIKL----LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---------PL  375 (560)
Q Consensus       309 ~~~~~~i~e~g~v~~L~~l----L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---------~~  375 (560)
                      ...+.    ...++.+...    ...++. +-+..++.+|+|+..  +..         ++.+..++.+         +.
T Consensus       162 ~~~~~----~~~~~~l~~~l~~~~~~~~~-~~~~~~LkaLGN~g~--p~~---------i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         162 TVSCP----DELLQPLHDLLSQSSDRAKE-EEIVLALKALGNAGQ--PNS---------IKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             CSSCC----GGGTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTC--GGG---------HHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCc----HHHHHHHHHHHHHhhcccch-HHHHHHHHHHhccCC--HhH---------HHHHHHHhcccccccccccHH
Confidence            11111    1223333333    344553 556678999999863  322         6777777743         23


Q ss_pred             cHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-c
Q 008585          376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA--GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-A  452 (560)
Q Consensus       376 ~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-s  452 (560)
                      ++..|++++++++......      +.+.+..+..+  .+++++..|..+|-..--+.         ..+..+...+. .
T Consensus       226 vR~aAi~Alr~~~~~~p~~------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~---------~~l~~i~~~l~~E  290 (336)
T d1lsha1         226 VQAEAIMALRNIAKRDPRK------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPSV---------ALVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHHHHTTTTGGGTCHHH------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH---------HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhcCcHH------HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHhC
Confidence            6889999999987632111      24455555554  46899998888886632221         22445555554 4


Q ss_pred             CCHHHHHHHHHHHHHhcC
Q 008585          453 KPNSVREVAAQAISSLVT  470 (560)
Q Consensus       453 ~~~~v~~~A~~aL~~L~~  470 (560)
                      ++..|+......|.+++.
T Consensus       291 ~~~QV~sfv~S~l~~la~  308 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSR  308 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHh
Confidence            677788888888888884

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.56  E-value=1.8  Score=40.24  Aligned_cols=135  Identities=16%  Similarity=0.132  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHhCChhHHHH-HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC---hhhHHHh---------h
Q 008585          414 LGAQQAAASALCRVCTSAEMKKL-VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP---QNCREVK---------R  480 (560)
Q Consensus       414 ~~v~~~A~~aL~~La~~~~~~~~-i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~---~~~~~~~---------~  480 (560)
                      ...+..+..+|..+..+...... +...+++..++..+.+....++..|.+.|..++..+   .....++         .
T Consensus        70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~  149 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  149 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence            56788899999999887555444 455578999999999999999999999999998432   2222222         2


Q ss_pred             hCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChhHHHHHhhccCchhHHHHHHHH
Q 008585          481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAIGYLKKLSEMDIPGARKLLERL  548 (560)
Q Consensus       481 ~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l  548 (560)
                      +..-...++..+..+.....+..++..+..+..+.       ..|..+...|..+.+.+|-..+.++-..-++..
T Consensus       150 e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~~f  224 (343)
T d2bnxa1         150 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF  224 (343)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHHHHHHH
Confidence            33456888888877644344545555555555433       377888999999999999998887655555444

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.96  E-value=8.5  Score=35.35  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             HHHHHccCCH-HHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC---------C--CHHHHHHHHHHHHHHhc
Q 008585          159 LLARLQIGHL-EAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA---------T--SPRIREKTVTVICSLAE  225 (560)
Q Consensus       159 Ll~~L~~~~~-~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~---------~--~~~v~~~A~~~L~~La~  225 (560)
                      .+..|+++-. +.....+..|.--+..++ .....+ +.+|...|+.+|..         +  +...+..++.+|..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            3444555433 334445666654455444 445555 45677778877631         1  25577789999999988


Q ss_pred             CCchHH-HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC
Q 008585          226 SGSCEN-WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM  266 (560)
Q Consensus       226 ~~~~~~-~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~  266 (560)
                      ...... .+-..+++..++..|.+....++..|..+|..++.
T Consensus        86 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~  127 (343)
T d2bnxa1          86 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI  127 (343)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHh
Confidence            776444 44566789999999999999999999999998875