Citrus Sinensis ID: 008589

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

MKIESARNGKSWDEIESDSNQDVDLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQANLRRVKKRISKNGNRAGSGQFGDDSGNLSLDSSGEGITGGKQNAKSGLCCTCSKSSLCKTNKCQCRAAGGACKASCGCSSTKCSNREAIIIKEDELSKPNMASEQSGQGADETDKDHALVTHGAMLLQNALIERPADTDEDGGARRKPLSDIGNTLVKSNAPKPNQRKKWRKSTIQLVPVAPPSSQPQETTDVQKPENSTSETDIPLKLPRAMRSTTSNGSNLLRERNVDQAEESVNKELSVLPQSSPARPKRATEEKENCSR

cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHcHHHHccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHccc

cccEEccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccEcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHHcccc

mkiesarngkswdeiesdsnqdVDLLKNYVSKIQELEGELLRVKSthnskrsrnadsvdtdddgfrsknglfpslnefsadcdskvediSDEIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKassretsgsdsnIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQANLRRVKKRIskngnragsgqfgddsgnlsldssgegitggkqnaksglcctcsksslcktnkcqcraaggackascgcsstkcsnreaiiikedelskpnmaseqsgqgadetdkdhALVTHGAMLLQNAlierpadtdedggarrkplsdigntlvksnapkpnqrkkwrkstiqlvpvappssqpqettdvqkpenstsetdiplklpramrsttsngsnllrernVDQAEESVNKElsvlpqssparpkrateekencsr

mkiesarngkswdeiesdsnqdvDLLKNYVSKIQELEGELLrvksthnskrsrnadsvdtdddgfrsknglfpslnefsadcdsKVEDISDEIEDEekelehsslqekLDRELKELDKKLEQKEAemkrftgadtsvLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQlkkegrrneYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLesrkassretsgsdsniIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEvarlkeeseqanlrrvkkriskngnragsgqfgddsgnLSLDSSGEGITGGKQNAKSGLCCTCSKSSLCKTNKCQCRAAGgackascgcsstkCSNREAIIikedelskpnMASEQSGQGADETDKDHALVTHGAMLLQNALierpadtdedggarrkplsdigntlvksnapkpnqrkkwRKSTIQLvpvappssqpqettdvqkpenstsetdiplklpramrsttsngsnllrernVDQAEESVnkelsvlpqssparpkrateekencsr

MKIESARNGKSWDEIESDSNQDVDLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCdskvedisdeiedeekelehsslqekldrelkeldkkleqkeAEMKRFTGADTSVLKQHYekkvleleqekkilqvHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQANLRRVKKRISKNGNRAGSGQFgddsgnlsldssgegITGGKQNAksglcctcsksslcktnkcQCRaaggackascgcsstkcsNREAIIIKEDELSKPNMASEQSGQGADETDKDHALVTHGAMLLQNALIERPADTDEDGGARRKPLSDIGNTLVKSNAPKPNQRKKWRKSTIQLVPVAPPSSQPQETTDVQKPENSTSETDIPLKLPRAMRSTTSNGSNLLRERNVDQAEESVNKELSVLPQSSPARPKRATEEKENCSR

*************************LKNYVSKI****************************************************************************************************************VL******KILQVH************************************************************************************NIIFYEKALMQAIEHELEVTVRVHE***************************************************************************GLCCTCSKSSLCKTNKCQCRAAGGACKASCGCSSTKCSNREAIII****************************VTHGAMLLQNA*************************************************************************************************************************************

*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************K**CGCS****************************************************************************************************************************************************************************************

**************IESDSNQDVDLLKNYVSKIQELEGELLRVKS****************DDGFRSKNGLFPSLNEFSADCDSKVEDISD***************EKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKEL*************SDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQANLRRVKKRISKNGNRAGSGQFGDDSGNLSLDSSGEGITGGKQNAKSGLCCTCSKSSLCKTNKCQC*****************CSNREAIIIKEDELSKP**************DKDHALVTHGAMLLQNALIERPA********RRKPLSDIGNTLVKSNA**********KSTIQLVPV**********************TDIPLKLPRAMRSTTSNGSNLLRERNV**********************************

*******NGKSWDEIESDSNQDVDLLKNYVSKIQELEGELLRVKSTHNSKRSRN*DSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKAS**************EKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQA***********************************************LCCTCSKSSLCKTNKCQCRAAGGACKASCGCSSTKC*********************************HALVTHG**LL*NALIER***********RKPLSDIGNTLVKSNA*****RKKWRKSTIQLVPVA**********************************************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKIESARNGKSWDEIESDSNQDVDLxxxxxxxxxxxxxxxxxxxxxHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDTSVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVxxxxxxxxxxxxxxxxxxxxxRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVKKRISKNGNRAGSGQFGDDSGNLSLDSSGEGITGGKQNAKSGLCCTCSKSSLCKTNKCQCRAAGGACKASCGCSSTKCSNREAIIIKEDELSKPNMASEQSGQGADETDKDHALVTHGAMLLQNALIERPADTDEDGGARRKPLSDIGNTLVKSNAPKPNQRKKWRKSTIQLVPVAPPSSQPQETTDVQKPENSTSETDIPLKLPRAMRSTTSNGSNLLRERNVDQAEESVNKELSVLPQSSPARPKRATEEKENCSR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		560	2.2.26 [Sep-21-2011]
P33174		1231	Chromosome-associated kin	yes	no	0.323	0.147	0.358	3e-17
O95239		1232	Chromosome-associated kin	yes	no	0.353	0.160	0.310	1e-16
Q90640		1225	Chromosome-associated kin	yes	no	0.323	0.147	0.348	4e-16
Q91784		1226	Chromosome-associated kin	N/A	no	0.326	0.149	0.323	7e-16
Q2VIQ3		1234	Chromosome-associated kin	no	no	0.325	0.147	0.34	2e-15
Q9QXL2		1672	Kinesin-like protein KIF2	no	no	0.230	0.077	0.314	4e-07
Q7Z4S6		1674	Kinesin-like protein KIF2	no	no	0.246	0.082	0.302	4e-07
O75037		1637	Kinesin-like protein KIF2	no	no	0.221	0.075	0.305	3e-06
Q9QXL1		1668	Kinesin-like protein KIF2	no	no	0.221	0.074	0.298	8e-06

>sp\|P33174\|KIF4_MOUSE Chromosome-associated kinesin KIF4 OS=Mus musculus GN=Kif4 PE=2 SV=3	Back alignment and function desciption

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 118/195 (60%), Gaps = 14/195 (7%)

Query: 105 LQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQ---VHLQ 161
           LQE L+ ++ +L KKL+++   +K         LK+  E  V +L QE ++++   V L 
Sbjct: 603 LQE-LEGQIADLKKKLQEQSKLLK---------LKESTEHTVSKLNQEIRMMKNQRVQLM 652

Query: 162 QKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMAT 221
           +++K+++E+FR WK  ++KEV+QLK+  R+ +YE+ KL    Q+Q  VL+RKTEEA+ A 
Sbjct: 653 RQMKEDAEKFRQWKQQKDKEVIQLKERDRKRQYELLKLERNFQKQSNVLRRKTEEAAAAN 712

Query: 222 KRLKELLESRKASSRETSGSDSNIIFYEKALMQ-AIEHELEVTVRVHEVRSEYERQMEER 280
           KRLK+ L+ +K  + +   + S  +    A M+  + +E+EV V   E +      +EER
Sbjct: 713 KRLKDALQKQKEVAEKRKETQSRGMESTAARMKNWLGNEIEVMVSTEEAKRHLNGLLEER 772

Query: 281 ARMANEVARLKEESE 295
             +A +VA+LKE+ E
Sbjct: 773 KILAQDVAQLKEKRE 787

Required for mitotic chromosomal positioning and bipolar spindle stabilization.
Mus musculus (taxid: 10090)

>sp\|O95239\|KIF4A_HUMAN Chromosome-associated kinesin KIF4A OS=Homo sapiens GN=KIF4A PE=1 SV=3	Back alignment and function description

>sp\|Q90640\|KIF4_CHICK Chromosome-associated kinesin KIF4 OS=Gallus gallus GN=KIF4 PE=2 SV=1	Back alignment and function description

>sp\|Q91784\|KIF4_XENLA Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1	Back alignment and function description

>sp\|Q2VIQ3\|KIF4B_HUMAN Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=2 SV=2	Back alignment and function description

>sp\|Q9QXL2\|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculus GN=Kif21a PE=1 SV=2	Back alignment and function description

>sp\|Q7Z4S6\|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2	Back alignment and function description

>sp\|O75037\|KI21B_HUMAN Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2	Back alignment and function description

>sp\|Q9QXL1\|KI21B_MOUSE Kinesin-like protein KIF21B OS=Mus musculus GN=Kif21b PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		560
356498850		1299	PREDICTED: chromosome-associated kinesin	0.528	0.227	0.566	9e-99
356551769		1317	PREDICTED: chromosome-associated kinesin	0.525	0.223	0.558	3e-97
357490023		1273	Kinesin-like protein [Medicago truncatul	0.525	0.230	0.579	7e-95
224113909		1229	predicted protein [Populus trichocarpa]	0.525	0.239	0.575	9e-91
359492491		1261	PREDICTED: chromosome-associated kinesin	0.526	0.233	0.557	2e-85
357465253		1153	Kinesin-like protein [Medicago truncatul	0.508	0.247	0.534	6e-84
302142065		1279	unnamed protein product [Vitis vinifera]	0.526	0.230	0.559	9e-84
255545966		1290	Chromosome-associated kinesin KIF4A, put	0.530	0.230	0.525	1e-82
10177316		1335	kinesin-like protein [Arabidopsis thalia	0.516	0.216	0.525	1e-81
224063323		1290	predicted protein [Populus trichocarpa]	0.516	0.224	0.513	1e-79

>gi\|356498850\|ref\|XP_003518261.1\| PREDICTED: chromosome-associated kinesin KIF4-like [Glycine max]	Back alignment and taxonomy information

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 213/376 (56%), Positives = 253/376 (67%), Gaps = 80/376 (21%)

Query: 1   MKIESARNGKSWDEIESDSNQDVDLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDT 60
           MKIES RNGKSWDEI+S+SNQD DL+K+YVSKIQ+LEGEL R+K+ +   +SR+ D VD+
Sbjct: 437 MKIESIRNGKSWDEIDSNSNQDYDLVKSYVSKIQDLEGELQRLKNLN--AKSRHVDWVDS 494

Query: 61  DDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEHSSLQEKLDRELKELDKKL 120
           DD GFRSKN LF S NE+S+DCD+K  DI+D++ED  KE+EHSSLQEKLDRELKELDKKL
Sbjct: 495 DDSGFRSKNVLFASGNEYSSDCDAKSVDITDDMEDHAKEIEHSSLQEKLDRELKELDKKL 554

Query: 121 EQ-----------------------------------KEAEMKRFTGADTSV-------- 137
           EQ                                   KE E  ++  A+ S         
Sbjct: 555 EQKEAEMKMFNNADTSVLKHHYEKKVLELEQEKKFLQKEIEELKYNLANISSTSDDGAQK 614

Query: 138 LKQHYEKKVLELEQEKKILQ----------------------------------VHLQQK 163
           LK+ Y +K+  LE +  +L+                                  V LQ K
Sbjct: 615 LKEEYLQKLNALEAQVSVLKKKQESQAQLLRQKHKSDEAAKRLQDEIQRIKSHKVQLQHK 674

Query: 164 IKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKR 223
           IKQESEQFR+WKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEA++ATKR
Sbjct: 675 IKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEATLATKR 734

Query: 224 LKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARM 283
           LKELLESRK +SRE++G+        +ALMQAIEHELEVTVRVHEVRS +ERQMEERA+M
Sbjct: 735 LKELLESRK-TSRESTGAAGGNGPGIQALMQAIEHELEVTVRVHEVRSAHERQMEERAKM 793

Query: 284 ANEVARLKEESEQANL 299
           ANE+ARLKEE++   L
Sbjct: 794 ANEIARLKEEADMMKL 809

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356551769\|ref\|XP_003544246.1\| PREDICTED: chromosome-associated kinesin KIF4-like [Glycine max]	Back alignment and taxonomy information

>gi\|357490023\|ref\|XP_003615299.1\| Kinesin-like protein [Medicago truncatula] gi\|355516634\|gb\|AES98257.1\| Kinesin-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224113909\|ref\|XP_002332472.1\| predicted protein [Populus trichocarpa] gi\|222832555\|gb\|EEE71032.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359492491\|ref\|XP_002283825.2\| PREDICTED: chromosome-associated kinesin KIF4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357465253\|ref\|XP_003602908.1\| Kinesin-like protein [Medicago truncatula] gi\|355491956\|gb\|AES73159.1\| Kinesin-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|302142065\|emb\|CBI19268.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255545966\|ref\|XP_002514043.1\| Chromosome-associated kinesin KIF4A, putative [Ricinus communis] gi\|223547129\|gb\|EEF48626.1\| Chromosome-associated kinesin KIF4A, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|10177316\|dbj\|BAB10642.1\| kinesin-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224063323\|ref\|XP_002301096.1\| predicted protein [Populus trichocarpa] gi\|222842822\|gb\|EEE80369.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		560
TAIR\|locus:2173537		1294	AT5G60930 [Arabidopsis thalian	0.267	0.115	0.746	2.2e-96
TAIR\|locus:2160912		1035	FRA1 "FRAGILE FIBER 1" [Arabid	0.276	0.149	0.608	1.1e-40
TAIR\|locus:2074855		1051	KICP-02 [Arabidopsis thaliana	0.242	0.129	0.592	4.5e-39
TAIR\|locus:2145934		439	AT5G33300 "AT5G33300" [Arabido	0.228	0.291	0.459	6.1e-24
MGI\|MGI:108389		1231	Kif4 "kinesin family member 4"	0.260	0.118	0.374	3e-17
ZFIN\|ZDB-GENE-040426-1545		1248	zgc:66125 "zgc:66125" [Danio r	0.260	0.116	0.348	5.6e-17
UNIPROTKB\|E9PSJ3		1231	Kif4 "Protein Kif4" [Rattus no	0.242	0.110	0.386	7.7e-17
UNIPROTKB\|Q90640		1225	KIF4 "Chromosome-associated ki	0.242	0.111	0.364	1.7e-16
UNIPROTKB\|F1P1M8		1226	KIF4A "Uncharacterized protein	0.242	0.110	0.364	1.7e-16
UNIPROTKB\|F1PDX5		1234	KIF4A "Uncharacterized protein	0.242	0.110	0.364	2.5e-16

TAIR\|locus:2173537 AT5G60930 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 542 (195.9 bits), Expect = 2.2e-96, Sum P(3) = 2.2e-96
 Identities = 118/158 (74%), Positives = 133/158 (84%)

Query:   160 LQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASM 219
             LQQKIKQESEQFR WKASREKEV+QLKKEGRRNEYEMHKL+ALNQ+QK+VLQRKTEEAS 
Sbjct:   682 LQQKIKQESEQFRAWKASREKEVMQLKKEGRRNEYEMHKLMALNQKQKLVLQRKTEEASQ 741

Query:   220 ATKRLKELLESRKASSRET-SGSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQME 278
              TKRLKELL++RKASSRET SG++       +ALMQAIEHE+EVTVRVHEVRSEYERQ E
Sbjct:   742 VTKRLKELLDNRKASSRETLSGANGP---GTQALMQAIEHEIEVTVRVHEVRSEYERQTE 798

Query:   279 ERARMANEVARLKEESEQANLRRVKKRISKNGNRAGSG 316
             ERARMA EVARL+EE+E   L+  K  IS +G+    G
Sbjct:   799 ERARMAKEVARLREENEL--LKNAK--ISVHGDTMSPG 832

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

TAIR\|locus:2160912 FRA1 "FRAGILE FIBER 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074855 KICP-02 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145934 AT5G33300 "AT5G33300" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:108389 Kif4 "kinesin family member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1545 zgc:66125 "zgc:66125" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PSJ3 Kif4 "Protein Kif4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q90640 KIF4 "Chromosome-associated kinesin KIF4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P1M8 KIF4A "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PDX5 KIF4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.231.10.1	hypothetical protein (1229 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		560
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	6e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.002
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.003
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
pfam00769		244	pfam00769, ERM, Ezrin/radixin/moesin family	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 15/218 (6%)

Query: 91  DEIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELE 150
           +E+++E KE E     E+L  EL+EL++KLE+   E+     ++     +  +K++  L 
Sbjct: 242 EELQEELKEAEE--ELEELTAELQELEEKLEELRLEV-----SELEEEIEELQKELYALA 294

Query: 151 QEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVL 210
            E   L+   Q  +++            E ++ +L+   + +E    + LA  + +   L
Sbjct: 295 NEISRLEQQKQI-LRERLANLERQLEELEAQLEELES--KLDELA--EELAELEEKLEEL 349

Query: 211 QRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRVHEVR 270
           + + E      + L+  LE  ++   E    +  +      + Q       +   +  + 
Sbjct: 350 KEELESLEAELEELEAELEELESRLEE---LEEQLETLRSKVAQLELQIASLNNEIERLE 406

Query: 271 SEYERQMEERARMANEVARLKEESEQANLRRVKKRISK 308
           +  ER  + R R+  E+  L ++ E+A L+ ++  + +
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|216108 pfam00769, ERM, Ezrin/radixin/moesin family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		560
KOG0244		913	consensus Kinesin-like protein [Cytoskeleton]	99.9
KOG0964		1200	consensus Structural maintenance of chromosome pro	95.76
PF00038		312	Filament: Intermediate filament protein; InterPro:	95.67
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	95.57
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.55
PRK03918		880	chromosome segregation protein; Provisional	95.54
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	95.34
KOG0244		913	consensus Kinesin-like protein [Cytoskeleton]	95.23
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.22
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	95.02
PF03638		42	TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do	94.78
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	94.69
KOG0996		1293	consensus Structural maintenance of chromosome pro	94.68
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	94.64
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	94.59
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	94.48
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	94.02
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	93.92
PF05033		103	Pre-SET: Pre-SET motif; InterPro: IPR007728 This r	93.75
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	93.73
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.68
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	93.61
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	93.58
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	93.41
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	93.34
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	93.18
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	92.94
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	92.58
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	92.09
PLN03229		762	acetyl-coenzyme A carboxylase carboxyl transferase	91.73
KOG0933		1174	consensus Structural maintenance of chromosome pro	91.72
KOG0979		1072	consensus Structural maintenance of chromosome pro	91.29
KOG4807		593	consensus F-actin binding protein, regulates actin	90.55
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	90.23
PRK02224		880	chromosome segregation protein; Provisional	89.43
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	89.35
KOG0971		1243	consensus Microtubule-associated protein dynactin	89.28
PF04065		233	Not3: Not1 N-terminal domain, CCR4-Not complex com	89.19
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.15
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	88.84
PRK04778		569	septation ring formation regulator EzrA; Provision	88.09
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	87.85
PF00038		312	Filament: Intermediate filament protein; InterPro:	87.61
KOG0996		1293	consensus Structural maintenance of chromosome pro	87.42
PF05266		190	DUF724: Protein of unknown function (DUF724); Inte	84.75
PF14988		206	DUF4515: Domain of unknown function (DUF4515)	84.4
KOG0971		1243	consensus Microtubule-associated protein dynactin	84.24
KOG0964		1200	consensus Structural maintenance of chromosome pro	84.18
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	83.87
KOG0982		502	consensus Centrosomal protein Nuf [Cell cycle cont	83.51
PRK11637		428	AmiB activator; Provisional	82.16
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	82.01
KOG0933		1174	consensus Structural maintenance of chromosome pro	81.58
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	81.46
KOG4657		246	consensus Uncharacterized conserved protein [Funct	81.16

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

Probab=99.90  E-value=3.1e-23  Score=231.56  Aligned_cols=211  Identities=31%  Similarity=0.288  Sum_probs=178.1

Q ss_pred             ccccccccCcchhhhHHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHHHHh-----hhccccchHHHHHHHHHHHHHH
Q 008589           80 ADCDSKVEDISDEIEDEEKELEHSSLQE-----KLDRELKELDKKLEQKEAEM-----KRFTGADTSVLKQHYEKKVLEL  149 (560)
Q Consensus        80 s~~~~~~~~~~~Ei~~~eKE~eh~~lQ~-----k~~KeLeEL~kRLqelE~em-----k~~~q~kl~KlKe~~EkKLs~L  149 (560)
                      .+|+.....++.|+.+++.|.+...-+.     ..-+.-+++.++|+.+|.++     ++.++.++.+.++.++.....+
T Consensus       505 ~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl  584 (913)
T KOG0244|consen  505 EQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKL  584 (913)
T ss_pred             HHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHH
Confidence            4566666666666666666665544333     25567788899999999996     4457788888999999999999


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589          150 EQEK---KILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKE  226 (560)
Q Consensus       150 e~El---K~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe  226 (560)
                      .+||   |.++|+|+++|++++++||+|++.++||++||++++|+++|++.++++++.+|..||+|||+||++|+|||++
T Consensus       585 ~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~  664 (913)
T KOG0244|consen  585 LQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKE  664 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998   5566999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhcc-cCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589          227 LLESRKASSR-ETS--GSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEES  294 (560)
Q Consensus       227 ~LekRKas~R-k~s--gs~~g~~~~a~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~  294 (560)
                      ++..|+.+.- ...  .++    +...+...|+.+|++|++.+++.+++|+.++++|+.+..++..|+.+.
T Consensus       665 a~~~r~~~~s~~~~~~~~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~  731 (913)
T KOG0244|consen  665 ALCIRALTSSGQVTLGDNG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG  731 (913)
T ss_pred             HHHHHhhcCCCccchhhcC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999996621 111  111    334889999999999999999999999999999999999999888866

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana	Back alignment and domain information

>PF14988 DUF4515: Domain of unknown function (DUF4515)	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>KOG4657 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		560
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 37/248 (14%), Positives = 103/248 (41%), Gaps = 42/248 (16%)

Query: 59  DTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIED--EEKELEHSSLQEK--LDRELK 114
           +T +  ++ K+ L    + F  + D K  D+ D  +    ++E++H  +  K  +   L+
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHI-IMSKDAVSGTLR 66

Query: 115 ELDKKLEQKEAEMKRFTGADTSVLKQHY----EKKVLELEQEKKILQVHLQQ--KIKQES 168
                L ++E  +++F      VL+ +Y         E  Q   + +++++Q  ++  ++
Sbjct: 67  LFWTLLSKQEEMVQKFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 169 EQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQ-----RKTEEASMA--T 221
           + F  +  SR +  L+L++           LL L   + +++       KT  A     +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQ----------ALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 222 KRLKELLESR----KASSRETSGSDSNII--FY---EKALMQAIEHELEVTVRVHEVRSE 272
            +++  ++ +       +  +  +   ++       +       +H   + +R+H +++E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 273 YERQMEER 280
             R ++ +
Sbjct: 234 LRRLLKSK 241

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		560
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	94.63
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	90.78
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	90.69
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	89.06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.37
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.17
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	86.49
1x79_B		112	RAB GTPase binding effector protein 1; rabaptin5,	86.38
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	84.02
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	83.42
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	82.04

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

Probab=94.63  E-value=0.9  Score=47.66  Aligned_cols=70  Identities=17%  Similarity=0.092  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589          161 QQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLES  230 (560)
Q Consensus       161 mkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Lek  230 (560)
                      ++++++....+..--+...+++.+++++-+..+.++..|+..-+.+...+++-.+|..+++..++.++++
T Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334333333333344444555555566666667788888888888888888889999988888888863

PyMOL of 3oja

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		560
d1qjla_		28	Metallothionein {Purple sea urchin (Strongylocentr	94.06
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	92.5
d1t2ya_		26	Metallothionein {Neurospora crassa [TaxId: 5141]}	89.35
d1m0ja_		28	Metallothionein {Black rockcod (Notothenia coriice	86.88
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	84.98
d1dmfa_		28	Metallothionein {Crab (Callinectes sapidus), alpha	84.83
d2mrba_		31	Metallothionein {Rabbit (Oryctolagus cuniculus) [T	83.99

>d1qjla_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]}	Back information, alignment and structure

class: Small proteins
fold: Metallothionein
superfamily: Metallothionein
family: Metallothionein
domain: Metallothionein
species: Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]

Probab=94.06  E-value=0.014  Score=38.34  Aligned_cols=26  Identities=35%  Similarity=1.172  Sum_probs=21.4

Q ss_pred             ccccccccccCCCCCCCCCCccCcccc
Q 008589          355 CKTNKCQCRAAGGACKASCGCSSTKCS  381 (560)
Q Consensus       355 CKt~kC~cra~g~~Cg~sCgC~~~KCs  381 (560)
                      |....|+| |.|--||++|+|+...|.
T Consensus         2 ctnaackc-angckcgsgcsctegnca   27 (28)
T d1qjla_           2 CTNAACKC-ANGCKCGSGCSCTEGNCA   27 (28)
T ss_dssp             CCCTTCCC-CTTCCTTSCCCCBTTBCC
T ss_pred             cccccccc-ccCcccCCCccccCCccc
Confidence            55667887 678899999999988875

PyMOL of d1qjla_

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}	Back information, alignment and structure

>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1dmfa_ g.46.1.1 (A:) Metallothionein {Crab (Callinectes sapidus), alpha and beta domains [TaxId: 6763]}	Back information, alignment and structure

>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure