Citrus Sinensis ID: 008593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
Protein Sequence
MSQSKMVPKRPFDDDGFGVLVPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQNSLTVGDFPPVPGNGGGGNNWCPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAARKMASRPFYINMNY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEcccccEEccccccccEEEEEEEcccccccccccccHHHHHHccccccccccccEEEEEEEEEcccEEEcccEEEEcccccccccEEEEEEEEEcccccccEEEEEEEccEEEEccccccccccccccccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHccccccccEEEEEEcccEEEEEcEEEEEEEEEEcccEEccccccccHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEEccccEEEcccccccEEEEEEEEEccccccccccccHHHHHHHcEccccccccEEcEEEEEEEEccEEEEcEEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEcccEEEEEccEEEEEEEEEcccEEEcHHHccHHHHHHHHHHHHHHHHHHHHcEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccc
Coil and Loop (DISEMBL)
msqskmvpkrpfdddgfgvlvpeprkrptlkKVVDDVMKGNWQNKMVASLEPCIRSVVREELervllprfhpgarssfnqaetsegrglqllfvnklpcpiytgsrieaedggpvkivlvdpisktrvtsgpyssMKVEILVLngdfgsddhenwTEREFLEKIVREregkrplvtgeLHITLKDGVGILSDIVftdnsswirCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHrgelnkkhyppslddDIWRLEKIAKDGKYHERLAKKGVYNVKDFLrmhttdpgslckiiSASNKTWETIVEHAATcvvndgklfaftGDGIILLLNSIYKLVAVtfdgencvhpndlafpqkiSVENLKRVAYKNVNQFVLIDAranfgplmpspnqqdealssptsilqnhefpfahqevqfgldhaststsysqeavaddhqshpiqnsltvgdfppvpgnggggnnwcpscpqlvpsnhlavempqlqmpgwspynaiweqsngiffapssdsnfgvhisrigkpKAAWCKIRAAVILESVRRDLAARKMasrpfyinmny
Flexible Loop (DISEMBL)
msqskmvpkrpfdddgfgvlvpeprkrptlkkvvddvmkgnwqnkmvaslepciRSVVREELERVLlprfhpgarssfnqaETSEGRGLQLLFVNKLPCPIYTGsrieaedggpvkIVLVdpisktrvtsgpyssmKVEILVLNGdfgsddhenWTEREFLekivreregkrplvtgelhitlkdgvgiLSDIVFtdnsswircRKFRLGARVLQKGCREarikeakseafvvkdhrgelnkkhyppsldddiWRLEKIAKDgkyherlakkgvynvKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQNSLTVGDFPPVPGNGGGGNNWCPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAarkmasrpfyinmny
Low Complexity Region (SEG)
MSQSKMVPKRPFDDDGFGVLVPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQNSLTVGDFPPVPgnggggnnWCPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAARKMASRPFYINMNY
Disordered region (IsUnstruct)
*****************************LKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFH***************RGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHR**L***HYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFG****************************************************************************GGNNWCPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAARKMA**PFY*****
Disordered Region (DISOPRED)
*********************************VDDVMKGNWQ*************VVRE*****************************QLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIV******RPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELN**HYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVH************ENLKRVAYKNVNQFVLIDARA*************************************************************************************************************************************************WCKIRAAVILESVRRDLAARKMASRP**IN***
Disordered Region (DISEMBL)
*********RPFDDDGFGVLVPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFGPLMPSP*********PTSILQNHEFPFAHQEVQFGLD*******************HPIQNSLTVGDFPPVPGNGGGGNNWCPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAARKMASRPFYINMNY
Disordered Region (DISPRO)
************************RKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFH****SSFNQA**SEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFG****************************************TSTSYSQEAVADDHQSHPIQNSLTVGDFPPVPGNGGGGNNWCPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAARKMASRPFYINMNY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQSKMVPKRPFDDDGFGVLVPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQNSLTVGDFPPVPGNGGGGNNWCPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAARKMASRPFYINMNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	560
224123924	582	predicted protein [Populus trichocarpa]	0.967	0.931	0.467	1e-136
147856442	586	hypothetical protein VITISV_019567 [Viti	0.944	0.902	0.472	1e-122
296089750	589	unnamed protein product [Vitis vinifera]	0.946	0.899	0.466	1e-120
255542848	514	conserved hypothetical protein [Ricinus	0.817	0.891	0.428	1e-101
225446126	642	PREDICTED: uncharacterized protein LOC10	0.662	0.577	0.467	2e-92
297735353	628	unnamed protein product [Vitis vinifera]	0.662	0.590	0.467	2e-92
224114057	637	predicted protein [Populus trichocarpa]	0.710	0.624	0.439	6e-91
297836768	621	calmodulin-binding protein [Arabidopsis	0.967	0.872	0.363	6e-91
42569137	622	Calmodulin-binding protein [Arabidopsis	0.967	0.871	0.364	8e-91
168018689	427	predicted protein [Physcomitrella patens	0.667	0.875	0.466	4e-90

>gi|224123924|ref|XP_002330243.1| predicted protein [Populus trichocarpa] gi|222871699|gb|EEF08830.1| predicted protein [Populus trichocarpa]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/578 (46%), Positives = 358/578 (61%), Gaps = 36/578 (6%)

Query: 6   MVPKRPFD----DDGFGVLVPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREE 61
           M  KR F      DG  +  P  ++    K  V DVM     + +V+ +EP +R+V+R+E
Sbjct: 1   MSSKRDFQFVDGGDGIAMGAPAAQESKRFKNAVRDVMGKLSVSDLVSEMEPFLRAVIRDE 60

Query: 62  LERVLLPRFHPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVD 121
           +ER +       + SS NQ +TS  RGL L FVNKLP  I+TG +IEAED  PV IVL+D
Sbjct: 61  VERTVQRVLQSSSSSSLNQPQTSVKRGLMLQFVNKLPPTIFTGGKIEAEDDKPVTIVLMD 120

Query: 122 PISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHI 181
             + T VTSGP +S+K+EI+ L+ DFGSDD E+WTE EF  +++REREG+RPLVTG+L I
Sbjct: 121 ANTNTIVTSGPLASLKIEIVPLDADFGSDDQEDWTESEFAARVIREREGRRPLVTGDLAI 180

Query: 182 TLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELN 241
           TL+DGVG L D+VFTDNSSW R RKFRLGAR +QK   E RI+E +SEAFVVKDHRGE  
Sbjct: 181 TLRDGVGQLGDMVFTDNSSWQRSRKFRLGARPVQKVSGETRIREGRSEAFVVKDHRGESY 240

Query: 242 KKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SN 299
           +KH+PP   D+IWRLE+IAKDG  H+RLA  GV +V+DFLR++  DP  L  ++ +  SN
Sbjct: 241 QKHHPPHFRDEIWRLERIAKDGALHKRLAIDGVKSVQDFLRLYMIDPTKLRNVLGSGISN 300

Query: 300 KTWETIVEHAATCVVNDGKLFAF--TGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQ 357
           +TW+TI+ HA TCVV+D K +++   G  I LL +SIY++V   FDG      ++L  PQ
Sbjct: 301 RTWDTIIRHATTCVVDDSKFYSYFDAGQSIGLLFDSIYQVVGAMFDGHKYEPLHNLTPPQ 360

Query: 358 KISVENLKRVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQEV 417
           K+ VEN+KR AY+NV+ F+ +DA A FGP       Q E  + P    Q  EFP A Q+ 
Sbjct: 361 KVLVENIKRQAYENVDNFIQMDATALFGPSRSFTTLQAEPFNDPNLAQQQLEFPVARQDQ 420

Query: 418 Q-----FGLDHASTSTSYSQEA----VADDHQSHPIQ-------NSLTVGDFPPVPGNGG 461
           Q     F    +STS  Y++      V+    SH ++       NS    DF P+P N  
Sbjct: 421 QQVRMDFYNSPSSTSYGYAESGSPLEVSVSQTSHQVEALPQVFRNSFKFTDFFPLPYN-- 478

Query: 462 GGNNWCPS-CPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGIFFAP---------SSD 511
           G N+W P+  P L  +   A +M  +Q P WSP N+ W   N   F           SS 
Sbjct: 479 GENSWSPNGWPVLTSTQLSAGDMSDVQTPTWSPGNSTWGPGNAFIFTADNEGDVGIFSSR 538

Query: 512 SNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAARKM 549
            NFGVH+S+I  PKA WCK+RAA+ + S  RD+AA++M
Sbjct: 539 PNFGVHVSQIRAPKARWCKLRAALKMGSFMRDVAAKRM 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856442|emb|CAN82842.1| hypothetical protein VITISV_019567 [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/574 (47%), Positives = 347/574 (60%), Gaps = 45/574 (7%)

Query: 14  DDGFGVL-VPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERV--LLPRF 70
           DD FGV    E  KR      V DVM      +M   +EP  R +VREE+ER   L    
Sbjct: 18  DDDFGVAGQGEKMKRFKFASAVRDVMSERLLKEMALRMEPFFRVLVREEVERASRLFLNA 77

Query: 71  HPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTS 130
            PG  S  NQ E+S  R  QL F +KLP  I+TGSR+EAE    VKIV++D  SK  +TS
Sbjct: 78  SPGPSS--NQIESSGVRNWQLHFASKLPSKIFTGSRVEAEGSTSVKIVILDARSKDIITS 135

Query: 131 GPYSSMKVEILVLNGDFGS-DDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGI 189
           GP SS+K+EILVL+GDFG+ DD+E+WTE EF   IVREREGKRPLVTGEL +TL+ GVG 
Sbjct: 136 GPLSSVKIEILVLDGDFGTTDDNEDWTESEFNTNIVREREGKRPLVTGELFVTLRCGVGY 195

Query: 190 LSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSL 249
           + D+ FTDNSSWIR RKFRLGAR +    +E RI+EA+SEAFVVKDHRGEL KKH+PPSL
Sbjct: 196 IDDVSFTDNSSWIRSRKFRLGARAVSGISKEVRIREARSEAFVVKDHRGELYKKHHPPSL 255

Query: 250 DDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKII--SASNKTWETIVE 307
           DD +WRLE+IAKDG  H+RL   G++NVKDFLR++ TD  SL K++    SNK WE I+E
Sbjct: 256 DDKVWRLERIAKDGASHKRLDSHGIHNVKDFLRLYVTDQSSLRKLLGNGISNKIWEIIIE 315

Query: 308 HAATCVVNDGKLFAFT--GDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLK 365
           HA T  V D +L+ ++  G+ + ++L+SIYK+V +TFD  +    + L   +KI +E+LK
Sbjct: 316 HANT-YVGDEELYVYSRAGESLGVVLSSIYKIVGLTFDSHSYQAVDKLTMQEKILMEDLK 374

Query: 366 RVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQ---EVQFGLD 422
           R AYKNVN            P  P P  Q E  + P   L  H FP  HQ   + Q G D
Sbjct: 375 RHAYKNVNDIKPF-------PTRPFPTIQTETFNDPC--LSLHNFPVTHQDQSDSQMGFD 425

Query: 423 HASTSTSY----SQEAVADDHQSHPIQ-------NSLTVGDFPPVPGNGGGGNNWCPSCP 471
            + +S+ Y    + + V      HP++       +S  + D    P NGG G +   S  
Sbjct: 426 QSPSSSYYDWDDNNQEVVSLAACHPLEALSPMLRSSFIMRDTYTGPFNGGIGWSSSGSPG 485

Query: 472 QLVPSNHLAV-EMPQLQMPGWSPYNAIWEQSNGIFFAP---------SSDSNFGVHISRI 521
            ++P+ HLA  +  Q Q     P +A W Q N  F A          SS  NFG+ +SR 
Sbjct: 486 PVMPNGHLAADDTFQFQTSTLFPVSATWGQGNSFFLAANNEAEVGILSSHPNFGIGMSRK 545

Query: 522 GKPKAAWCKIRAAVILE-SVRRDLAARKMASRPF 554
           GKP+A WCKIRAA+    SVRRD+AA++M    F
Sbjct: 546 GKPRARWCKIRAALKWGISVRRDVAAKRMEKLIF 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089750|emb|CBI39569.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/575 (46%), Positives = 346/575 (60%), Gaps = 45/575 (7%)

Query: 14  DDGFGVL-VPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERV--LLPRF 70
           DD FGV    E  KR      V DVM      +M   +EP  R +VREE+ER   L    
Sbjct: 20  DDDFGVAGQGEKMKRFKFASAVRDVMSERLLKEMALRMEPFFRVLVREEVERASRLFLNA 79

Query: 71  HPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTS 130
            PG  S  NQ E+S  R  QL F +KLP  I+TGSR+EAE    VKIV++D  SK  +TS
Sbjct: 80  SPGPSS--NQIESSGVRNWQLHFASKLPSKIFTGSRVEAEGSTSVKIVILDARSKDIITS 137

Query: 131 GPYSSMKVEILVLNGDFGS-DDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGI 189
           GP SS+K+EILVL+GDFG+ DD+E+WTE EF   IVREREGKRPLVTGEL +TL+ GVG 
Sbjct: 138 GPLSSVKIEILVLDGDFGTTDDNEDWTESEFNTNIVREREGKRPLVTGELFVTLRCGVGY 197

Query: 190 LSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSL 249
           + D+ FTDNSSWIR RKFRLGAR +    +E RI+EA+SEAFVVKDHRGEL KKH+PPSL
Sbjct: 198 IDDVSFTDNSSWIRSRKFRLGARAVSGISKEVRIREARSEAFVVKDHRGELYKKHHPPSL 257

Query: 250 DDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKII--SASNKTWETIVE 307
           DD +WRLE+IAKDG  H+RL   G++NVKDFLR++ TD  SL K++    SNK WE I+E
Sbjct: 258 DDKVWRLERIAKDGASHKRLDSHGIHNVKDFLRLYVTDQSSLRKLLGNGISNKIWEIIIE 317

Query: 308 HAATCVVNDGKLFAFT--GDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLK 365
           HA T  V D +L+ ++  G+ + ++L+SIYK+V +TFD  +    + L   +K  +E+LK
Sbjct: 318 HANT-YVGDEELYVYSRAGESLGVVLSSIYKIVGLTFDSHSYQAVDKLTMQEKFLMEDLK 376

Query: 366 RVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQ---EVQFGLD 422
           R AYKNVN            P  P P  Q E  + P   L  H FP  HQ   + Q G D
Sbjct: 377 RHAYKNVNDIKPF-------PTRPLPTIQTETFNDPC--LPLHNFPVRHQDQSDSQMGFD 427

Query: 423 HASTSTSY----SQEAVADDHQSHPIQ-------NSLTVGDFPPVPGNGGGGNNWCPSCP 471
            + +S+ Y    + + V      HP++       +S  + D    P NGG G +   S  
Sbjct: 428 QSPSSSYYDWDDNNQEVVSLAACHPLEALSPMLRSSFILRDTYTGPFNGGIGWSSSGSPG 487

Query: 472 QLVPSNHLAV-EMPQLQMPGWSPYNAIWEQSNGIFFAP---------SSDSNFGVHISRI 521
            ++P+ HLA  +  Q Q     P +A W Q N  F A          SS  NFG+ +SR 
Sbjct: 488 PVMPNGHLAADDTFQFQTSTLFPVSATWGQGNSFFLAANNEAEVGILSSHPNFGIGMSRK 547

Query: 522 GKPKAAWCKIRAAVILE-SVRRDLAARKMASRPFY 555
           GKP+A WCKIRAA+    SVRRD+ A++M  +  +
Sbjct: 548 GKPRARWCKIRAALKWGISVRRDVEAKRMMQKLIF 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542848|ref|XP_002512487.1| conserved hypothetical protein [Ricinus communis] gi|223548448|gb|EEF49939.1| conserved hypothetical protein [Ricinus communis]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/539 (42%), Positives = 300/539 (55%), Gaps = 81/539 (15%)

Query: 30  LKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPGARSSFNQAETSEGRGL 89
            K V+ DV+       M A +EP +R VVR+E+ER +    HP  R  FNQ ET+ GRG 
Sbjct: 26  FKNVIRDVLGMLSVEDMAAKMEPFLRRVVRDEVERTVCRILHPSFRPPFNQNETTGGRGF 85

Query: 90  QLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGS 149
            L FVNK P  I+T SRIEAEDG P++I L D   KT VTSGP S MK+EILVLNGDFG 
Sbjct: 86  LLRFVNKPPSTIFTNSRIEAEDGSPIRIELWDANRKTLVTSGPLSCMKIEILVLNGDFGL 145

Query: 150 DDHENWTEREFLEKIVREREGKRPLVT-GELHITLKDGVGILSDIVFTDNSSWIRCRKFR 208
           DD E+W+E EF   ++REREG+RPLVT G+L++TL+ GV  +SD+ FTDNSSW R RKFR
Sbjct: 146 DDLEDWSETEFNASVIREREGRRPLVTGGDLNVTLRGGVVSISDVAFTDNSSWQRSRKFR 205

Query: 209 LGARVLQK---GCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKY 265
           LGA+ + K      EARI+EA+SEAFVVKDHRGEL KKHYPP LDD++WRLE+IAKDG  
Sbjct: 206 LGAKPVSKISGESGEARIREARSEAFVVKDHRGELYKKHYPPQLDDEVWRLERIAKDGSS 265

Query: 266 HERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGD 325
           H++LA+ G+  V+DFL+ +  +P  L        +T+E +                    
Sbjct: 266 HKKLAELGIRTVRDFLQRYAVNPPEL-------RRTYEPL-------------------- 298

Query: 326 GIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFG 385
                                    + L  P K  VENLKR AY NV +F+LIDA A  G
Sbjct: 299 -------------------------DKLTPPHKALVENLKRQAYNNVKEFILIDAHAISG 333

Query: 386 PLMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQ 445
           P         ++       LQ  + P A +      D       ++    A+     P++
Sbjct: 334 PSRTLTCPGSDSYHDQNLGLQQPDLPVARK------DEPEMLIDFNTAGSANHLFQSPLR 387

Query: 446 NSLTVGD-FPPVPGNGGGGNNWCPSCPQL-VPSNHLA-VEMPQLQMPGWSPYNA---IWE 499
           NS  +GD F P  G     + W  S  Q  +P+N L   E+ Q Q   WS  N+    W 
Sbjct: 388 NSFKLGDLFLPCTGE----STWQTSVSQWHIPTNQLTPEEILQPQTSNWSAGNSPGCSWG 443

Query: 500 QSNGIFFAP--------SSDSNFGVHISRIGKPKAAWCKIRAAVI-LESVRRDLAARKM 549
           Q +   F+         S+   F VH+SRI KPKA WCK+RAA++   SVRRD+AA++M
Sbjct: 444 QGDTFIFSSGNEELGFISAHPRFSVHMSRIRKPKAGWCKLRAAIMKWGSVRRDIAAKRM 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446126|ref|XP_002270522.1| PREDICTED: uncharacterized protein LOC100264980 [Vitis vinifera]

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/383 (46%), Positives = 251/383 (65%), Gaps = 12/383 (3%)

Query: 25  RKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPG---ARSSFNQA 81
           RKRP L  V+ + +K +   K+ +SLEP +R VV EE+ER L  +  P     RSS  + 
Sbjct: 32  RKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERAL-AKLGPARLNGRSSPKRI 90

Query: 82  ETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEIL 141
           E  +GR LQL F ++L  P++TG ++E E G  + IVLVD  S + VTSGP SS+K++++
Sbjct: 91  EGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGAAIHIVLVDANSGSVVTSGPESSVKLDVV 150

Query: 142 VLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSW 201
           VL GDF ++D E WT+ EF   +V+EREGKRPL+TG+L +TLK+GVG L D+ FTDNSSW
Sbjct: 151 VLEGDFNNEDEEGWTQEEFDSHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSW 210

Query: 202 IRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAK 261
           IR RKFRLG +V    C    I+EAK+EAF VKDHRGEL KKHYPP+L DD+WRLEKI K
Sbjct: 211 IRSRKFRLGLKVALGFCEGIHIREAKTEAFTVKDHRGELYKKHYPPALTDDVWRLEKIGK 270

Query: 262 DGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCVVNDGKL 319
           DG +H+RL    +Y V+DFLR+   D   L  I+ +  SNK WE ++EHA TC ++ GK 
Sbjct: 271 DGSFHKRLNNSHIYTVEDFLRLVVRDSQKLRSILGSGMSNKMWEALIEHAKTCTMS-GKF 329

Query: 320 FAFTGD---GIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFV 376
           + +  D    + ++ N+IY+L  +   GE     + L+  QK+ V+NL + AY+N NQ  
Sbjct: 330 YVYYSDDTRNVGVIFNNIYELSGL-IAGEQYFSADSLSESQKVYVDNLVKKAYENWNQVE 388

Query: 377 LIDARA-NFGPLMPSPNQQDEAL 398
             D ++ +F  ++ S   ++E +
Sbjct: 389 EYDGKSLSFKQIIRSSTSRNEHM 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735353|emb|CBI17793.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/383 (46%), Positives = 251/383 (65%), Gaps = 12/383 (3%)

Query: 25  RKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPG---ARSSFNQA 81
           RKRP L  V+ + +K +   K+ +SLEP +R VV EE+ER L  +  P     RSS  + 
Sbjct: 18  RKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERAL-AKLGPARLNGRSSPKRI 76

Query: 82  ETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEIL 141
           E  +GR LQL F ++L  P++TG ++E E G  + IVLVD  S + VTSGP SS+K++++
Sbjct: 77  EGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGAAIHIVLVDANSGSVVTSGPESSVKLDVV 136

Query: 142 VLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSW 201
           VL GDF ++D E WT+ EF   +V+EREGKRPL+TG+L +TLK+GVG L D+ FTDNSSW
Sbjct: 137 VLEGDFNNEDEEGWTQEEFDSHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSW 196

Query: 202 IRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAK 261
           IR RKFRLG +V    C    I+EAK+EAF VKDHRGEL KKHYPP+L DD+WRLEKI K
Sbjct: 197 IRSRKFRLGLKVALGFCEGIHIREAKTEAFTVKDHRGELYKKHYPPALTDDVWRLEKIGK 256

Query: 262 DGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCVVNDGKL 319
           DG +H+RL    +Y V+DFLR+   D   L  I+ +  SNK WE ++EHA TC ++ GK 
Sbjct: 257 DGSFHKRLNNSHIYTVEDFLRLVVRDSQKLRSILGSGMSNKMWEALIEHAKTCTMS-GKF 315

Query: 320 FAFTGD---GIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFV 376
           + +  D    + ++ N+IY+L  +   GE     + L+  QK+ V+NL + AY+N NQ  
Sbjct: 316 YVYYSDDTRNVGVIFNNIYELSGL-IAGEQYFSADSLSESQKVYVDNLVKKAYENWNQVE 374

Query: 377 LIDARA-NFGPLMPSPNQQDEAL 398
             D ++ +F  ++ S   ++E +
Sbjct: 375 EYDGKSLSFKQIIRSSTSRNEHM 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114057|ref|XP_002316655.1| predicted protein [Populus trichocarpa] gi|222859720|gb|EEE97267.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 183/416 (43%), Positives = 262/416 (62%), Gaps = 18/416 (4%)

Query: 1   MSQSKMVPKRPFDDDGFGVLVPEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVRE 60
           M+ +    KR  D    G      RKRP L  V+ + +K +   ++ +SLEP +R VV E
Sbjct: 12  MAAAPAREKRGLDSSTGGDEGQPERKRPALASVIVEALKVDSLQRLCSSLEPILRRVVSE 71

Query: 61  ELERVLLPRFHPG---ARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKI 117
           E+ER L  +  P     RSS    E   GR LQL F ++L  P++TG ++E E G  + I
Sbjct: 72  EVERAL-AKIGPAKLTGRSSPKCIEGPGGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHI 130

Query: 118 VLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTG 177
           VL+D  +   VTSGP SS+K++++VL GDF ++D +NWT+ EF   +V+EREGKRPL+TG
Sbjct: 131 VLIDGNTGHVVTSGPESSVKLDVIVLEGDFNNEDDDNWTQEEFESHVVKEREGKRPLLTG 190

Query: 178 ELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHR 237
           +L +TLK+GVG L +++FTDNSSWIR RKFRLG +V    C + RI+EAK++AF VKDHR
Sbjct: 191 DLQVTLKEGVGTLGELIFTDNSSWIRSRKFRLGLKVASGCCEDIRIREAKTDAFTVKDHR 250

Query: 238 GELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA 297
           GEL KKHYPP+L+DD+WRLEKI KDG +H+RL K G+Y+V+DFLR+   DP  L  I+ +
Sbjct: 251 GELYKKHYPPALNDDVWRLEKIGKDGSFHKRLTKAGIYSVEDFLRLVVRDPQRLRTILGS 310

Query: 298 --SNKTWETIVEHAATCVVNDGKLFAFTGDG--IILLLNSIYKLVAVTFDGENCVHPNDL 353
             SNK W+++VEHA TCV++      +  D   + ++ N+IY+   +  +GE       L
Sbjct: 311 GMSNKMWDSLVEHAKTCVLSGKHYIYYPEDAKNVGIVFNNIYEFSGLIANGE-YYSSGSL 369

Query: 354 AFPQKISVENLKRVAYKNVNQFV------LIDARANFGPLMPS---PNQQDEALSS 400
           +  QK+ V++L + AY N    +      L+D + N G +      P+ Q E L+S
Sbjct: 370 SDNQKVYVDSLVKKAYDNWMHVIEYDGKSLLDFKQNQGIVASQNDVPSSQQEFLNS 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836768|ref|XP_002886266.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata] gi|297332106|gb|EFH62525.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 327/603 (54%), Gaps = 61/603 (10%)

Query: 6   MVPKRPFDDDGFGVLVPEP-RKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELER 64
           M  KR  D+D       +P RKRP L  V+ + +K +   ++ +SLEP +R VV EE+ER
Sbjct: 12  MREKRKLDEDDNQQQQQQPERKRPALASVIVEALKMDSLQRLCSSLEPILRRVVSEEVER 71

Query: 65  VLLPRFHPG---ARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVD 121
            L  +  P     RSS  + E   GR LQL F ++L  P++TG +IE E G  + +VL+D
Sbjct: 72  AL-AKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQGAAIHVVLLD 130

Query: 122 PISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHI 181
             +   +T GP +S K++++VL+GDF ++D E W+  EF   +V+ER+GKRPL+TG++ +
Sbjct: 131 MTTGHVLTVGPEASAKLDVVVLDGDFNTEDDEGWSGEEFEGHLVKERQGKRPLLTGDVQV 190

Query: 182 TLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELN 241
           TLK+GVG L +++FTDNSSWIRCRKFRLG +V    C   R++EAK+EAF VKDHRGEL 
Sbjct: 191 TLKEGVGTLGELIFTDNSSWIRCRKFRLGLKVSSGYCEGMRVREAKTEAFTVKDHRGELY 250

Query: 242 KKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SN 299
           KKHYPP+LDD++WRLEKI KDG +H++L K G+YNVK+FLR+   D   L  I+ +  SN
Sbjct: 251 KKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTILGSGMSN 310

Query: 300 KTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKI 359
           + WET+ EH+ TCV+++     +  D + ++ N+IY+   +   G+     + L+  QK 
Sbjct: 311 RMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNIYEFSGL-ISGKQYYPADSLSDNQKG 369

Query: 360 SVENLKRVAYKNVNQFVLIDARA--NFGPL---------MP--SPNQQDEALSSPTSILQ 406
            V+ L R AY+N +Q +  D+++  NF  +         MP   P+Q   + S  T    
Sbjct: 370 YVDGLVRKAYENWDQVIEYDSKSLMNFNQVSKTDAIDYSMPVSVPSQPSTSYSDVTVEAY 429

Query: 407 NH----EFPFAHQEVQFGLDHASTSTSYSQEAVADD-HQSHPIQNSLTVGDFPPVPGNGG 461
           N      FP   Q       H   S+   Q+ + ++ H+S  + NS +       P  G 
Sbjct: 430 NESPASSFPGQSQLADTTYMHFGNSSFAPQDHLVNNTHESQSMINSNSGVRLALGPATGS 489

Query: 462 GG-------------NNWCPSCPQLVP-----------SNHLAV--EMPQL----QMPG- 490
                          N+W  +C + V            SN +    +M QL     M G 
Sbjct: 490 QNQQLVQPPPEINSYNDWSNTCNRGVDGFLSEEEIRARSNEMLENDDMQQLLRLFSMNGG 549

Query: 491 --WSPYNAIWEQSNGIF-FAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAAR 547
              +P N + E   G   F  ++ +++    S  GK    W KI+AA+      R  AA+
Sbjct: 550 DQQTPMN-MGEDGFGFHSFGQTAIADYEEDRSNSGKAVVGWLKIKAAMRWGFFIRRKAAQ 608

Query: 548 KMA 550
           + A
Sbjct: 609 RRA 611

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569137|ref|NP_565441.2| Calmodulin-binding protein [Arabidopsis thaliana] gi|79322475|ref|NP_001031372.1| Calmodulin-binding protein [Arabidopsis thaliana] gi|334184299|ref|NP_001189550.1| Calmodulin-binding protein [Arabidopsis thaliana] gi|225898120|dbj|BAH30392.1| hypothetical protein [Arabidopsis thaliana] gi|330251708|gb|AEC06802.1| Calmodulin-binding protein [Arabidopsis thaliana] gi|330251709|gb|AEC06803.1| Calmodulin-binding protein [Arabidopsis thaliana] gi|330251710|gb|AEC06804.1| Calmodulin-binding protein [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 220/604 (36%), Positives = 326/604 (53%), Gaps = 62/604 (10%)

Query: 6   MVPKRPFDDDGFGVLVPEP-RKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELER 64
           M  KR  ++D       +P RKRP L  V+ + +K +   ++ +SLEP +R VV EE+ER
Sbjct: 12  MREKRKLEEDDNQQQQQQPERKRPALASVIVEALKMDSLQRLCSSLEPILRRVVSEEVER 71

Query: 65  VLLPRFHPG---ARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVD 121
            L  +  P     RSS  + E   GR LQL F ++L  P++TG +IE E G  + +VL+D
Sbjct: 72  AL-AKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQGAAIHVVLLD 130

Query: 122 PISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHI 181
             +   +T GP +S K++++VL+GDF ++D + W+  EF   +V+ER+GKRPL+TG++ +
Sbjct: 131 MTTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGKRPLLTGDVQV 190

Query: 182 TLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELN 241
           TLK+GVG L +++FTDNSSWIRCRKFRLG RV    C   R++EAK+EAF VKDHRGEL 
Sbjct: 191 TLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAFTVKDHRGELY 250

Query: 242 KKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SN 299
           KKHYPP+LDD++WRLEKI KDG +H++L K G+YNVK+FLR+   D   L  I+ +  SN
Sbjct: 251 KKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTILGSGMSN 310

Query: 300 KTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKI 359
           + WET+ EH+ TCV+++     +  D + ++ N+IY+   +   G+     + L+  QK 
Sbjct: 311 RMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNIYEFSGL-ISGKQYYPADSLSDNQKG 369

Query: 360 SVENLKRVAYKNVNQFVLIDARA--NFGPL---------MP--SPNQQDEALSSPTSILQ 406
            V+ L R AY+N  Q +  D+++  NF  +         MP   P+Q   + S  T    
Sbjct: 370 YVDGLVRKAYENWEQVIEYDSKSLMNFNQVSKTDDIDYSMPVSVPSQPSTSYSDVTVEAY 429

Query: 407 NH----EFPFAHQEVQFGLDHASTSTSYSQEAVADD-HQSHPIQNSLTVGDFPPVPGNGG 461
           N      FP   Q       H   S+   Q+ + ++ H+S  + NS         P  G 
Sbjct: 430 NQSPASSFPGQSQLADTTYMHFGNSSFAPQDQLVNNTHESQSMINSNGGVRLALGPATGS 489

Query: 462 GG--------------NNWCPSCPQLVP-----------SNHLAV--EMPQL----QMPG 490
                           N+W  +C + V            SN +    +M QL     M G
Sbjct: 490 QNQEQLVHPPPEINSYNDWSNTCNRGVDGFLSEEEIRARSNEMLENDDMQQLLRLFSMNG 549

Query: 491 ---WSPYNAIWEQSNGIF-FAPSSDSNFGVHISRIGKPKAAWCKIRAAVILESVRRDLAA 546
               +P N + E S G   F  +S +++    S  GK    W KI+AA+      R  AA
Sbjct: 550 GDQQTPLN-MGEDSFGFHSFGQTSMADYEEDRSNSGKAVVGWLKIKAAMRWGFFIRRKAA 608

Query: 547 RKMA 550
           ++ A
Sbjct: 609 QRRA 612

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168018689|ref|XP_001761878.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686933|gb|EDQ73319.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 182/390 (46%), Positives = 253/390 (64%), Gaps = 16/390 (4%)

Query: 23  EPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHP----GARSSF 78
           E R RP L  V+ + +K +   K+ ++LEP +R +V EE+ER L  +F P    G RSS 
Sbjct: 18  EKRPRPQLASVIVEAVKMDCMQKLCSTLEPLLRKMVGEEVERAL-TKFAPPKVGGIRSSP 76

Query: 79  NQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKV 138
            + +  + + L+L F NKL  P++TGS++E E G  + +VL +  +   VTSGP +S K+
Sbjct: 77  RKIQGPDQQNLRLQFRNKLALPLFTGSKVEGEQGSAIHVVLQNTNTGHVVTSGPEASAKL 136

Query: 139 EILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDN 198
           +I+VL GDF +DD ENWT+ EF   +VRER+GKRPL+TGEL +TLKDGVG L ++ FTDN
Sbjct: 137 DIVVLEGDFTADDEENWTQEEFENYMVRERDGKRPLLTGELSVTLKDGVGTLGELTFTDN 196

Query: 199 SSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEK 258
           SSWIR RKFRLG R+    C   RI+EAK+EAF VKDHRGEL KKHYPP+L+D++WRL+K
Sbjct: 197 SSWIRSRKFRLGVRLASGQCEGMRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLDK 256

Query: 259 IAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIIS--ASNKTWETIVEHAATCVVND 316
           I KDG +H+RL +  V  V+DFLR+   DP  L  I+    SNK WE  VEHA TCV++ 
Sbjct: 257 IGKDGAFHKRLNQANVVTVEDFLRLVVMDPQRLRNILGNGMSNKMWEGTVEHAKTCVLS- 315

Query: 317 GKLFAFTGD---GIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVN 373
           GKL  +  D    I ++ N+I++L+ +  DG + +  + L+  +K+ V+ L +VAY+N  
Sbjct: 316 GKLHVYYADEKQNIGVIFNNIFQLMGLIADG-SYMSVDSLSDSEKVYVDKLVKVAYENWE 374

Query: 374 QFVLIDARANFGPLMPSPNQQDEALSSPTS 403
             V  D  A    L+   N Q +   S TS
Sbjct: 375 NVVEYDGEA----LIGVKNYQAKGFDSHTS 400

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	560
TAIR|locus:2054000	622	AT2G18750 [Arabidopsis thalian	0.773	0.696	0.404	8e-89
TAIR|locus:2174522	647	AT5G57580 [Arabidopsis thalian	0.726	0.629	0.431	2.1e-86
TAIR|locus:2117557	601	AT4G25800 [Arabidopsis thalian	0.707	0.658	0.436	5.7e-86
TAIR|locus:2148548	563	CBP60G "Cam-binding protein 60	0.898	0.893	0.365	1.5e-74
TAIR|locus:2061112	599	AT2G24300 [Arabidopsis thalian	0.637	0.595	0.407	1.1e-72
TAIR|locus:2126679	562	AT4G31000 [Arabidopsis thalian	0.678	0.676	0.388	2.9e-71
TAIR|locus:505006222	451	SARD1 "AT1G73805" [Arabidopsis	0.648	0.804	0.388	5.4e-67

TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
 Identities = 181/447 (40%), Positives = 273/447 (61%)

Query:     4 SKMVPKRPFDDDGFGVLVPEP-RKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREEL 62
             + M  KR  ++D       +P RKRP L  V+ + +K +   ++ +SLEP +R VV EE+
Sbjct:    10 NSMREKRKLEEDDNQQQQQQPERKRPALASVIVEALKMDSLQRLCSSLEPILRRVVSEEV 69

Query:    63 ERVLLPRFHPGA---RSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVL 119
             ER L  +  P     RSS  + E   GR LQL F ++L  P++TG +IE E G  + +VL
Sbjct:    70 ERALA-KLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQGAAIHVVL 128

Query:   120 VDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGEL 179
             +D  +   +T GP +S K++++VL+GDF ++D + W+  EF   +V+ER+GKRPL+TG++
Sbjct:   129 LDMTTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGKRPLLTGDV 188

Query:   180 HITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGE 239
              +TLK+GVG L +++FTDNSSWIRCRKFRLG RV    C   R++EAK+EAF VKDHRGE
Sbjct:   189 QVTLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAFTVKDHRGE 248

Query:   240 LNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA-- 297
             L KKHYPP+LDD++WRLEKI KDG +H++L K G+YNVK+FLR+   D   L  I+ +  
Sbjct:   249 LYKKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTILGSGM 308

Query:   298 SNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQ 357
             SN+ WET+ EH+ TCV+++     +  D + ++ N+IY+   +   G+     + L+  Q
Sbjct:   309 SNRMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNIYEFSGL-ISGKQYYPADSLSDNQ 367

Query:   358 KISVENLKRVAYKNVNQFVLIDARA--NFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQ 415
             K  V+ L R AY+N  Q +  D+++  NF  +  +    D   S P S+       ++  
Sbjct:   368 KGYVDGLVRKAYENWEQVIEYDSKSLMNFNQVSKT---DDIDYSMPVSVPSQPSTSYSDV 424

Query:   416 EVQFGLDHASTSTSYSQEAVADDHQSH 442
              V+   + +  S+   Q  +AD    H
Sbjct:   425 TVE-AYNQSPASSFPGQSQLADTTYMH 450

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
 Identities = 184/426 (43%), Positives = 264/426 (61%)

Query:    22 PEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLL---P-RFHPGARSS 77
             PE RKRP    V+ + +K +   K+ +SLEP +R VV EELER L    P R    + SS
Sbjct:    24 PE-RKRPAFASVIVEALKVDSLQKLCSSLEPILRRVVSEELERALAKLGPARLTGSSGSS 82

Query:    78 FNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMK 137
               + E  +GR LQL F ++L  P++TG ++E E G  + +VL+D  +   V  GP +S K
Sbjct:    83 PKRIEGPDGRKLQLHFKSRLSLPLFTGGKVEGEQGAVIHVVLIDANTGRAVVYGPEASAK 142

Query:   138 VEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTD 197
             + I+VL GDF ++D E+WT+ EF   +V+ER GKRPL+TGE+++TLK+GVG L ++VFTD
Sbjct:   143 LHIVVLEGDFNTEDDEDWTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGTLGELVFTD 202

Query:   198 NSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLE 257
             NSSWIR RKFRLG RV+   C   RI+EAK+EAFVVKDHRGEL KKHYPP+L+DD+WRL+
Sbjct:   203 NSSWIRSRKFRLGLRVVSGCCDGMRIREAKTEAFVVKDHRGELYKKHYPPALNDDVWRLD 262

Query:   258 KIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCVVN 315
             KI KDG +H++L  +G+  V+DFLR+   D   L  I+ +  SNK W+ +VEHA TCV  
Sbjct:   263 KIGKDGAFHKKLTAEGINTVEDFLRVMVKDSPKLRTILGSGMSNKMWDALVEHAKTCV-Q 321

Query:   316 DGKLFAFTGD---GIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNV 372
               KL+ +  +    + ++ N+IY+L  +   G+     + L   QK+ VE L + AY+N 
Sbjct:   322 SSKLYIYYAEDSRNVGVVFNNIYELSGL-ISGDQYFSADSLTDSQKVYVEGLVKKAYENW 380

Query:   373 NQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQ 432
             N  +  D ++    L+    +Q + LS   + L+N+        +Q    H+S S   +Q
Sbjct:   381 NLVIEYDGKS----LLDL--KQPQRLSITHTNLENYSTAAIDHPMQMVAGHSS-SMPPNQ 433

Query:   433 EAVADD 438
               V  D
Sbjct:   434 SPVLSD 439

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 179/410 (43%), Positives = 261/410 (63%)

Query:    22 PEPRKRPTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVL---LP-RFHPGARSS 77
             PE RKRP L  V+ + +K +   K+ +SLEP +R VV EE+ER L   +P R    +  S
Sbjct:    13 PE-RKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLVPTRLTTSSVFS 71

Query:    78 FNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMK 137
               +    +GR LQL F ++L  P++TG R+E E G  + +VL+D  +   VT GP +S+K
Sbjct:    72 PKRIGGPDGRNLQLHFKSRLSLPLFTGGRVEGEQGATIHVVLIDANTGRPVTVGPEASLK 131

Query:   138 VEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTD 197
             +E++VL GDF ++D E+WT+ EF   +V+EREGKRPL+TG+L + LK+GVG L +IVFTD
Sbjct:   132 LEVVVLGGDFNNEDDEDWTQEEFESHVVKEREGKRPLLTGDLFVVLKEGVGTLGEIVFTD 191

Query:   198 NSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLE 257
             NSSWIR RKFRLG RV    C   RI+EAK+EAF VKDHRGEL KKHYPP+L+D++WRLE
Sbjct:   192 NSSWIRSRKFRLGLRVPSGYCDGIRIREAKTEAFSVKDHRGELYKKHYPPALNDEVWRLE 251

Query:   258 KIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCVVN 315
             KI KDG +H+RL   G+  V+ FLR    D   L  I+ +  SNK W+ +VEHA TCV++
Sbjct:   252 KIGKDGAFHKRLTAAGIVTVEGFLRQLVRDSTKLRAILGSGMSNKMWDLLVEHAKTCVLS 311

Query:   316 DGKLFAF-TGDG--IILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNV 372
              GKL+ + T D   + ++ N+IY+L  +  + +  +  + L+  QK+ V+ L + AY+N 
Sbjct:   312 -GKLYIYYTEDSRSVGVVFNNIYELSGLITE-DQYLSADSLSESQKVYVDGLVKKAYENW 369

Query:   373 NQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLD 422
             NQ V  +  +     +  P + D + + P + L ++      Q  +F ++
Sbjct:   370 NQVVEYEGESLLN--LNQPERLDISQTDPVTALASYSTVPLSQFPEFAIE 417

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 201/550 (36%), Positives = 290/550 (52%)

Query:    29 TLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVLLPRFHPGARS-SFNQAETSEGR 87
             T KKVV  VM+    N+ +  +E  IR +VREE++R L P       S   +++ET   R
Sbjct:    24 TFKKVVKKVMRDQSNNQFMIQMENMIRRIVREEIQRSLQPFLSSSCVSMERSRSETPSSR 83

Query:    88 G-LQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGD 146
               L+L F+N  P  I+TGS+IEAEDG P+ I LVD  + T V++GP+SS +VE++ LN D
Sbjct:    84 SRLKLCFINSPPSSIFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSSRVELVPLNAD 143

Query:   147 FGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILS-DIVFTDNSSWIRCR 205
             F     E+WT   F   I+ +REGKRPL+TG+L + LK+GVG+++ DI F+DNSSW R R
Sbjct:   144 F---TEESWTVEGFNRNILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWTRSR 200

Query:   206 KFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKY 265
             KFRLGA++   G  EAR     SEAF  +D RGE  KKH+PP   D++WRLEKIAKDG  
Sbjct:   201 KFRLGAKLTGDGAVEAR-----SEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKDGVS 255

Query:   266 HERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCVVNDGKLFAFT 323
               RLA++ +  VKDF R++T +   L  II A  S KTW TIV HA  CV+++ + + + 
Sbjct:   256 ATRLAERKILTVKDFRRLYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECYIYN 315

Query:   324 GD--GIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVE---NLKRVAYKNVNQFVLI 378
              +  G+ LL NS+Y+L+ V+F+G N +   D     ++  E   NL R+   N   FV  
Sbjct:   316 ANTPGVTLLFNSVYELIRVSFNG-NDIQNLDQPILDQLKAEAYQNLNRITAVNDRTFVGH 374

Query:   379 DARANFGPLMP------SPNQQ-D-----EALSSPTSILQNHEFPFAHQEVQFGLDHAST 426
               R+   P  P      S +Q  D     +  SS  ++         H +V    D++ST
Sbjct:   375 PQRSLQCPQDPGFVVTCSGSQHIDFQGSLDPSSSSMALCHKASSSTVHPDVLMSFDNSST 434

Query:   427 STSYSQEAVADDHQSHP-IQNSLTVGDFPPVPXXXXXXXX-WCPSCPQLVPSNHLAVEMP 484
             +  +       D +  P   NS  V +   V           C    +    N  +    
Sbjct:   435 ARFHI------DKKFLPTFGNSFKVSELDQVHGKSQTVVTKGCIENNE-EDENAFSYHHH 487

Query:   485 QLQMPGWSPYNAIWEQSNGIFFAPSSDSN-FGVHISRI--GKPKAAWCKIRAA----VIL 537
                   WSP      ++  +  + + ++  F VH + +  G P+A WCK++AA       
Sbjct:   488 DDMTSSWSPGTHQAVETMFLTVSETEEAGMFDVHFANVNLGSPRARWCKVKAAFKVRAAF 547

Query:   538 ESVRRDLAAR 547
             + VRR   AR
Sbjct:   548 KEVRRHTTAR 557

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 152/373 (40%), Positives = 227/373 (60%)

Query:    21 VPEPRKR--PTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVL--LPRFHPGARS 76
             +PE +++  P L  V+ + +K +   ++ +SLEP  R +V EE+ER L  L      +RS
Sbjct:    16 LPESKRQKVPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVERALSRLGNAKLTSRS 75

Query:    77 SF-NQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSS 135
                 + +   GR LQL F  ++P  ++TG ++E E G  + +VL+D  +   V +G  S+
Sbjct:    76 PEPKRIQDRNGRNLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTGEESA 135

Query:   136 MKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVF 195
              K+ ++VL GDF  +D E+WT   F    V+EREGKRP++TG+  I LK+GVG L ++ F
Sbjct:   136 SKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQIVLKEGVGTLGELTF 195

Query:   196 TDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWR 255
             TDNSSWIR RKFRLG +          I+EAK+E F VKDHRGEL KKHYPP++ D++WR
Sbjct:   196 TDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAVKDHRGELYKKHYPPAVHDEVWR 255

Query:   256 LEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCV 313
             L++IAKDG  H++L K  +  V+DFLR+   DP  L  ++ +  SN+ WE  VEHA TCV
Sbjct:   256 LDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRMWENTVEHAKTCV 315

Query:   314 VNDGKLFAFTGD-----GIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVA 368
             +  GKL+ F  D     G++   N IY+   +  +G+  +    L   QKIS + L ++A
Sbjct:   316 LG-GKLYVFYTDQTHATGVVF--NHIYEFRGLITNGQ-FLSLESLNHDQKISADILVKLA 371

Query:   369 YKNVNQFVLIDAR 381
             Y+N ++ +  D +
Sbjct:   372 YENWHKAIEYDGK 384

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 155/399 (38%), Positives = 240/399 (60%)

Query:    21 VPEPRKR--PTLKKVVDDVMKGNWQNKMVASLEPCIRSVVREELERVL--LPRFHPGARS 76
             +PE +++  P L  V+ + +K +   ++ +SLEP  R +V EE+ER +  L      +RS
Sbjct:    20 LPESKRQKLPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVERAISRLENSKSTSRS 79

Query:    77 SF-NQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSS 135
             +  N+ +  +GR LQL F  ++P  ++TG ++E E G  + +VL+D  +   + +G  S 
Sbjct:    80 TEPNKIQGLDGRNLQLRFRTRMPPHLFTGGKVEGEQGSAIHVVLIDANTGNVIQTGEESM 139

Query:   136 MKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVF 195
              K+ I+VL+GDF  +D ++WT   F    V+EREGKRP++TG+ H+ +K+GVG L  + F
Sbjct:   140 TKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRPILTGDRHVIIKEGVGTLGKLTF 199

Query:   196 TDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWR 255
             TDNSSWIR RKFRLG     K      I+EAK+E F VKDHRGEL KKHYPP L D++WR
Sbjct:   200 TDNSSWIRSRKFRLGV----KPATGFHIREAKTEPFAVKDHRGELYKKHYPPVLHDEVWR 255

Query:   256 LEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCV 313
             L+KIAKDG  H++L K  +  V+DFL++   DP  L  ++ +  SN+ W+  VEHA TCV
Sbjct:   256 LDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRSLLGSGMSNRMWDNTVEHAKTCV 315

Query:   314 VNDGKLFAFTGDGI---ILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYK 370
             +  GKL+A+  D      ++ N IY+   +  +G + +    L   QKIS + L + AY+
Sbjct:   316 LG-GKLYAYYTDQTHQTAVVFNHIYEFQGLIANG-HFLSSESLNHDQKISADTLVKTAYE 373

Query:   371 NVNQFVLIDARANFGPLMPSPNQQDEALSSPTSILQNHE 409
             N ++  +++        +P   +  ++L  P  + QNH+
Sbjct:   374 NWHK--VVEYGGKLLNCLPVAKKGIKSLPEP-KMAQNHQ 409

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
 Identities = 147/378 (38%), Positives = 226/378 (59%)

Query:    43 QNKMVASLEPCIRSVVREELERVLLPRFHPGARSSFN-QAETSEGRGLQLLFVNKLPCPI 101
             +N + + LEP IR VVR+E+E  +  RF     SSF  +A  +    L+L+F   L  PI
Sbjct:    43 ENTLRSVLEPVIRKVVRQEVEYGISKRFRLSRSSSFRIEAPEATTPTLKLIFRKNLMTPI 102

Query:   102 YTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFL 161
             +TGS+I   D  P++I+LVD  +K    + P   +K++I+ L+GDF S D   WT  EF 
Sbjct:   103 FTGSKISDVDNNPLEIILVDDSNKPVNLNRP---IKLDIVALHGDFPSGD--KWTSDEFE 157

Query:   162 EKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREA 221
               I++ER+GKRPL+ GE+ +T+++GV  + +IVFTDNSSWIR RKFR+GA+V +    + 
Sbjct:   158 SNIIKERDGKRPLLAGEVSVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQG 217

Query:   222 RIK-EAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDF 280
              +  EA +EA VV+DHRGEL KKH+PP L+D++WRLEKI KDG +H++L+ + +  V+DF
Sbjct:   218 VVVCEAMTEAIVVRDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQDF 277

Query:   281 LRMHTTDPGSLCKIISA--SNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLNSIYKLV 338
             L++   D   L +I+    S++ WE  ++HA  C++ + KL+   G    ++LN I +++
Sbjct:   278 LKLSVVDVDELRQILGPGMSDRKWEVTLKHARECILGN-KLYISRGPNFFMILNPICEVM 336

Query:   339 AVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFGPLMPSPNQQDEAL 398
                 DG        L  P    V+NL R AY   N   + +  AN   L+   +  D+  
Sbjct:   337 KALIDGHVLSSQESLNQPY---VKNLVRDAYSKGNFLEVGERTANEAALLTQGDDLDQQY 393

Query:   399 SSPTSILQNHEFPFAHQE 416
             ++  S  QN E   ++Q+
Sbjct:   394 AA--SHYQNIEIDKSYQQ 409

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_133000087 hypothetical protein (582 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	560
pfam07887	301	pfam07887, Calmodulin_bind, Calmodulin binding pro	1e-126

>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like

 Score =  370 bits (953), Expect = e-126
 Identities = 160/299 (53%), Positives = 213/299 (71%), Gaps = 9/299 (3%)

Query: 89  LQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFG 148
           L+L+F+NKL  PI+TGS+IEAEDG P+KI LVD    T VTSGP SS K+E++VL+GDF 
Sbjct: 2   LKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDA--NTGVTSGPLSSAKLEVVVLHGDFN 59

Query: 149 SDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFR 208
           S+D ENWTE EF + IV+EREGKRPL+TG++ +TLK+GV ++ +I FTDNSSW R RKFR
Sbjct: 60  SEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKFR 119

Query: 209 LGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHER 268
           LGARV+       R++EA +E+FVVKDHRGEL KKH+PPSL+D++WRLEKI KDG +H+R
Sbjct: 120 LGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHKR 179

Query: 269 LAKKGVYNVKDFLRMHTTDPGSLCKIISA--SNKTWETIVEHAATCVVNDGKLFAF---T 323
           L   G+  VKDFLR+   DP  L +I+ +  SNK WET + HA TCV+   K + +   +
Sbjct: 180 LTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVL-GDKCYIYRPAS 238

Query: 324 GDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARA 382
              + L  NS+Y+LV V+FDG + V  N+L+  Q+ +V  L + AY+N N     D   
Sbjct: 239 EKNVGLFFNSVYELVGVSFDG-SYVPANNLSELQQAAVNQLVKQAYQNWNNIEEYDHEM 296

The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	560
PF07887	299	Calmodulin_bind: Calmodulin binding protein-like;	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	89.13
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	88.31
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	87.6
PF14520	60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	85.97
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	85.51
PRK04301	317	radA DNA repair and recombination protein RadA; Va	84.65

>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species

Probab=100.00  E-value=1.2e-118  Score=906.46  Aligned_cols=294  Identities=56%  Similarity=0.940  Sum_probs=289.6

Q ss_pred             ceEEEEcCCCCCCcccCCceeeccCCceEEEEEeCCCCceeccCCCCcceEEEEEecCCCCCCCCCCCCHHHHhhccccc
Q 008593           88 GLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTRVTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVRE  167 (560)
Q Consensus        88 ~~~L~F~n~l~~pifT~~kI~a~~g~~I~V~L~D~~t~~~Vt~Gplss~kvEIvVLdGDF~~~~~e~WT~eEF~~~IV~~  167 (560)
                      ++||+|+|+|++|||||++|+|+||+||+|+|+|++|+  |++||+|++|||||||||||+.+++++||+|||++|||++
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~--v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~~   78 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG--VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVKE   78 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC--ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEeec
Confidence            58999999999999999999999999999999999887  9999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccEEEEecCceeeccceEeecCCcccccCccEEEEEEeeCCCCcceeeeeeecceEeecCCCcccccCCCC
Q 008593          168 REGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAFVVKDHRGELNKKHYPP  247 (560)
Q Consensus       168 R~Gk~pLL~Gdl~v~L~~Gva~l~di~FTDnSs~~rSrKFRLgvRv~~~~~~g~RI~EAvsE~FvVkd~Rge~~kKh~pP  247 (560)
                      |+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+|||||||
T Consensus        79 r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~pP  158 (299)
T PF07887_consen   79 REGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYPP  158 (299)
T ss_pred             CCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhc--CCcccHHHHHHhhcccccCCCceEEEe--
Q 008593          248 SLDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIIS--ASNKTWETIVEHAATCVVNDGKLFAFT--  323 (560)
Q Consensus       248 ~L~DeVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLg--ms~k~We~~v~HAktCv~~~~kly~y~--  323 (560)
                      +|+|||||||||||+|+|||+|+.+||+||+|||+|+++||++||++||  ||+|||++||+|||||+ +++++|+|.  
T Consensus       159 ~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCv-l~~~~y~y~~~  237 (299)
T PF07887_consen  159 SLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCV-LGDKLYVYYDE  237 (299)
T ss_pred             CCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcC-CCCcEEEEEec
Confidence            9999999999999999999999999999999999999999999999999  99999999999999999 888999994  


Q ss_pred             cCceEEEEccceeEEeeeeCCeeeecCCCCChhhHHHHHHHHHHHHHhcccceeccccccCC
Q 008593          324 GDGIILLLNSIYKLVAVTFDGENCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFG  385 (560)
Q Consensus       324 ~~~v~l~FN~i~~lVGa~~~g~~y~~~d~L~~~qk~~V~~lk~~AY~n~~~l~~~d~~~~~~  385 (560)
                      ++|++|+|||||+||||+|+|| |++.|+||+.||++|++||++||+||++|++||++++++
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~-y~s~d~L~~~qK~~v~~Lv~~AY~n~~~l~e~d~~~~~n  298 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQ-YVSLDNLSSAQKAYVDKLVKQAYENWDNLEEYDGKMLNN  298 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCE-EEehHHcCHHHHHHHHHHHHHHHHhhhhheecccchhcc
Confidence            8999999999999999999999 999999999999999999999999999999999999876

Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=89.13  E-value=0.38  Score=50.48  Aligned_cols=46  Identities=22%  Similarity=0.217  Sum_probs=42.4

Q ss_pred             hhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593          265 YHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV  313 (560)
Q Consensus       265 ~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv  313 (560)
                      .-++|+++||.||+||+..   ++..|.+++|+|....+.+.+||.+|.
T Consensus        13 ~~~~l~~~g~~t~~~~~~~---~~~~L~~i~~ls~~~~~~~~~~~~~~~   58 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAYA---PKKQLLEIKGISEAKADKILAEAAKLV   58 (316)
T ss_pred             HHHHHHHcCCCcHHHHHhC---CHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            4578999999999999865   899999999999999999999999987

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=88.31  E-value=0.51  Score=50.34  Aligned_cols=59  Identities=22%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593          252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV  313 (560)
Q Consensus       252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv  313 (560)
                      ++-+|+.-|-.-..-++|.++||.||+||+.+   ++..|.++.|+|....+.+++||.+|.
T Consensus        27 ~~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~~is~~~~~~~~~~~~~~~   85 (342)
T PLN03186         27 PIEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIKGISEAKVEKILEAASKLV   85 (342)
T ss_pred             cHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            45666553333345688999999999998865   789999999999999999999998887

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=87.60  E-value=0.53  Score=49.44  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=43.4

Q ss_pred             hhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccccC
Q 008593          264 KYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVN  315 (560)
Q Consensus       264 ~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv~~  315 (560)
                      ..-++|+++||.||+||+..   ++..|.++.|+|....+.+++.|+.+...
T Consensus        12 ~~~~~L~~~g~~t~~~~~~~---~~~~L~~~~gls~~~~~~i~~~~~~~~~~   60 (313)
T TIGR02238        12 ADIKKLKSAGICTVNGVIMT---TRRALCKIKGLSEAKVDKIKEAASKIINP   60 (313)
T ss_pred             HHHHHHHHcCCCcHHHHHhC---CHHHHHHhcCCCHHHHHHHHHHHHhhhcc
Confidence            34589999999999998765   79999999999999999999999988733

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A

Probab=85.97  E-value=0.35  Score=38.56  Aligned_cols=54  Identities=30%  Similarity=0.452  Sum_probs=44.1

Q ss_pred             chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhc
Q 008593          252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAA  310 (560)
Q Consensus       252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAk  310 (560)
                      +.-.+.+||+.-+  ++|.+.||.|++|+..+   +++.|.++=|++.+.=+.+++.|+
T Consensus         6 ~L~~I~Gig~~~a--~~L~~~G~~t~~~l~~a---~~~~L~~i~Gig~~~a~~i~~~~~   59 (60)
T PF14520_consen    6 DLLSIPGIGPKRA--EKLYEAGIKTLEDLANA---DPEELAEIPGIGEKTAEKIIEAAR   59 (60)
T ss_dssp             HHHTSTTCHHHHH--HHHHHTTCSSHHHHHTS---HHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred             hhccCCCCCHHHH--HHHHhcCCCcHHHHHcC---CHHHHhcCCCCCHHHHHHHHHHHh
Confidence            3445667777544  88999999999998664   888999999999999999998886

...

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=85.51  E-value=0.87  Score=48.71  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=49.4

Q ss_pred             chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccccC
Q 008593          252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVN  315 (560)
Q Consensus       252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv~~  315 (560)
                      ++..|+.-|-.=..-++|.++||+||+|++..   ++..|.++.|+|....+.+++.|+..+..
T Consensus        30 ~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~---~~~~L~~~~g~s~~~~~ki~~~a~~~~~~   90 (344)
T PLN03187         30 SIDKLISQGINAGDVKKLQDAGIYTCNGLMMH---TKKNLTGIKGLSEAKVDKICEAAEKLLNQ   90 (344)
T ss_pred             CHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence            46677663433345689999999999998765   78899999999999999999999887634

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=84.65  E-value=0.7  Score=47.93  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593          252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV  313 (560)
Q Consensus       252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv  313 (560)
                      ++-.|..||+.  .-++|.++||.|++|++.   .++..|.+++|++.+.++.+++-|+.++
T Consensus         7 ~l~~l~gIg~~--~a~~L~~~Gi~t~~dl~~---~~~~~L~~~~g~~~~~a~~l~~~a~~~~   63 (317)
T PRK04301          7 DLEDLPGVGPA--TAEKLREAGYDTVEAIAV---ASPKELSEAAGIGESTAAKIIEAAREAA   63 (317)
T ss_pred             cHhhcCCCCHH--HHHHHHHcCCCCHHHHHc---CCHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence            45566677754  458999999999999965   4899999999999999999999888644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	560
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 56/424 (13%), Positives = 104/424 (24%), Gaps = 151/424 (35%)

Query: 20  LVPEPRKRPTLKKVVDDVMKGNWQNKMVASLEP-C-----------IRSVVREELERVLL 67
           L  +P +   L  V+ +V       K   +    C              +       + L
Sbjct: 238 LKSKPYENCLL--VLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 68  PRFHPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIEAEDGGPVKIVLVDPISKTR 127
                         E         L +  L C        E     P ++ ++       
Sbjct: 292 DHHSMT----LTPDEVKS------LLLKYLDCRP-QDLPREVLTTNPRRLSII------- 333

Query: 128 VTSGPYSSMKVEILVLNGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGV 187
                             +   D    W   +  + +  ++          L   ++  +
Sbjct: 334 -----------------AESIRDGLATW---DNWKHVNCDK----------LTTIIESSL 363

Query: 188 GILSDI----------VFTDNSS---------WI------------RCRKFRLGARVLQK 216
            +L             VF  ++          W             +  K+ L    ++K
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL----VEK 419

Query: 217 GCREARIK------EAKSEAFVVKDHRGELNKK---HYPPSLDDDIWRLEKIAKDG---- 263
             +E+ I       E K +     ++   L++    HY      D   L     D     
Sbjct: 420 QPKESTISIPSIYLELKVKL----ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 264 --KYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFA 321
              +H  L            RM   D   L        K            + +D   + 
Sbjct: 476 HIGHH--LKNIEHPERMTLFRMVFLDFRFL------EQK------------IRHDSTAWN 515

Query: 322 FTGDGIILLLN-SIYKLVAVTFDGENCVHP----NDLA-FPQKISVENLKRVAYKNVNQF 375
            +G  +  L     YK     +  +N        N +  F  KI  ENL    Y ++ + 
Sbjct: 516 ASGSILNTLQQLKFYK----PYICDNDPKYERLVNAILDFLPKIE-ENLICSKYTDLLRI 570

Query: 376 VLID 379
            L+ 
Sbjct: 571 ALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	560
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	94.61
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	90.21
1b22_A	114	DNA repair protein RAD51; DNA binding, riken struc	85.46
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	83.46
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	80.01

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=94.61  E-value=0.011  Score=48.18  Aligned_cols=60  Identities=23%  Similarity=0.366  Sum_probs=51.9

Q ss_pred             CCcchhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc-cc
Q 008593          249 LDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT-CV  313 (560)
Q Consensus       249 L~DeVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt-Cv  313 (560)
                      +.|++-.|++|+..-+  ++|.++||+||+|+..+   +++.|..|.|+|...=+.++.-|+. |=
T Consensus         5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~gise~kA~~ii~aAr~~~w   65 (70)
T 1wcn_A            5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIEGLTDEKAGALIMAARNICW   65 (70)
T ss_dssp             CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSSSCCHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHccCCCHHHHHHHHHHHHHccC
Confidence            5678889998887655  89999999999987654   8889999999999999999999987 64

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=90.21  E-value=0.16  Score=42.81  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             hhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHh
Q 008593          266 HERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEH  308 (560)
Q Consensus       266 hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~H  308 (560)
                      -++|.++||.||+||+.   .|+.+|-+++|+|-+.=-.+..|
T Consensus        17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~ls~~~v~~l~r~   56 (83)
T 2kz3_A           17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCGLSYKALVALRRV   56 (83)
T ss_dssp             HHHHHHTTCCCHHHHTT---SCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHh---CCHHHHHHHhCCCHHHHHHHHHH
Confidence            47899999999999975   69999999999886655444444

>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1

Probab=85.46  E-value=0.51  Score=41.87  Aligned_cols=59  Identities=24%  Similarity=0.249  Sum_probs=50.9

Q ss_pred             chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593          252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV  313 (560)
Q Consensus       252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv  313 (560)
                      +|.+|+..|-.-+.-++|.++|++||++.   ...++..|.++-|+|...=+.+++=|+.++
T Consensus        24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~GIse~ka~kIi~aA~kl~   82 (114)
T 1b22_A           24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIKGISEAKADKILAEAAKLV   82 (114)
T ss_dssp             CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTTTCSTTHHHHHHHHHHHHS
T ss_pred             cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHccCCCHHHHHHHHHHHHHHc
Confidence            69999966544466799999999999976   456889999999999999999999999887

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=83.46  E-value=0.34  Score=47.83  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=46.5

Q ss_pred             cchhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593          251 DDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV  313 (560)
Q Consensus       251 DeVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv  313 (560)
                      +++..|++|+..  +-++|.++||+||+||+.+   ++..|-++.|+|.+.=+.+++.|+.+.
T Consensus         3 ~~~~~l~gi~~~--~~~kL~~~gi~t~~~~~~~---~~~~L~~~~gis~~~a~~~i~~a~~~~   60 (322)
T 2i1q_A            3 DNLTDLPGVGPS--TAEKLVEAGYIDFMKIATA---TVGELTDIEGISEKAAAKMIMGARDLC   60 (322)
T ss_dssp             --CTTSTTCCHH--HHHHHHHHTCCSHHHHHTC---CHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred             ccHhhcCCCCHH--HHHHHHHcCCCcHHHHHhC---CHHHHHHhhCcCHHHHHHHHHHHHHhh
Confidence            467788866654  5599999999999999854   678899999999888888888888775

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=80.01  E-value=1.1  Score=46.88  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             cchhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593          251 DDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV  313 (560)
Q Consensus       251 DeVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv  313 (560)
                      .+|-+|+..|-.-..-++|.++||+||++|+.   .++..|.+++|+|...=+.+++.|++++
T Consensus        81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~gis~~~~~~i~~~a~~~~  140 (400)
T 3lda_A           81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIKGISEAKADKLLNEAARLV  140 (400)
T ss_dssp             CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTSTTCCHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            46888988555445569999999999999985   5889999999999988888889988776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	560
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	93.26
d1b22a_	70	DNA repair protein Rad51, N-terminal domain {Human	90.3
d2i1qa1	60	DNA repair protein Rad51, N-terminal domain {Archa	80.32

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.26  E-value=0.025  Score=43.64  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             hhhhh--hhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccccC
Q 008593          253 IWRLE--KIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVN  315 (560)
Q Consensus       253 VwRLe--kIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv~~  315 (560)
                      |..|+  +||...+  ++|.++|++||++..   +..++.|.++-|++.+.=+.+++-|+.++.+
T Consensus         3 i~~L~~~Gig~~~~--~kL~~aG~~Tve~ia---~~t~~~L~~i~Gi~e~~a~KIi~~A~k~~~~   62 (64)
T d1szpa1           3 IEKLQVNGITMADV--KKLRESGLHTAEAVA---YAPRKDLLEIKGISEAKADKLLNEAARLVPM   62 (64)
T ss_dssp             GGGGCCTTCCHHHH--HHHHTTSCCSHHHHH---HSCSHHHHTSTTCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhHCCCCHHHH--HHHHHcCCCcHHHHH---hCCHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence            44554  6666555  899999999999874   5678889999999999999999999998743

>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.058  Score=42.19  Aligned_cols=58  Identities=26%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             hhhhh--hhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccccC
Q 008593          253 IWRLE--KIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVN  315 (560)
Q Consensus       253 VwRLe--kIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv~~  315 (560)
                      +..|+  +||..-+  ++|.++|++||++.   ++..+..|.++-|++.+.=+.+++-|+.|+.+
T Consensus        10 i~~L~~~Gig~~~i--~kL~~aG~~Tv~~i---~~at~~~L~~i~G~~e~~A~KIi~~a~k~~~~   69 (70)
T d1b22a_          10 ISRLEQCGINANDV--KKLEEAGFHTVEAV---AYAPKKELINIKGISEAKADKILAEAAKLVPM   69 (70)
T ss_dssp             HHHHHHTTCSHHHH--HHHHTTCCSSGGGB---TSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCC
T ss_pred             HHHHhhCCCCHHHH--HHHHHcCcchHHHH---HhCCHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence            66676  5665444  89999999999986   45678899999999999999999999999844

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=80.32  E-value=0.27  Score=36.86  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             hhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593          256 LEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV  313 (560)
Q Consensus       256 LekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv  313 (560)
                      +.+||..  .-++|.++|+.||++.   ..-+++.|.++=|++.+.=+.+++.|+.+.
T Consensus         4 IpGIG~~--~a~~L~~~G~~tv~~l---~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~   56 (60)
T d2i1qa1           4 LPGVGPS--TAEKLVEAGYIDFMKI---ATATVGELTDIEGISEKAAAKMIMGARDLC   56 (60)
T ss_dssp             STTCCHH--HHHHHHHHTCCSHHHH---HTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCHH--HHHHHHHccCCCHHHH---HhCCHHHHHHCCCCCHHHHHHHHHHHHHHc
Confidence            4556653  4589999999999875   456999999999999999999999999765