Citrus Sinensis ID: 008595

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
MPPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCRFSQSPMTSIV
ccccccEEcccccccEEEEccccccccccccccEEEccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccEEEEEcccccccEEEEccccEEEEEccccHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccHHHHHcEEEEEcccccccccEEEEEccccHHHHHHHHHccccccEEEEEEEEEEcccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHHccccccccccccccEEEEccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccEEccccccccccccccccccccccccEEcccccccccccc
ccccccEEEcccccEEEEcccccccccccccHHHEcccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccEEEEHHHcccEEEEcHHccEEEEEccccHHHHHHHHHHcccccccccccccEEEEEEEEccccccccccccccHHHHEEEEEEEEcccccccEEEEEEccccHHHHHHHHHHHHHHHHEEEEEEEEccHHEEEEEcccccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEcccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHcHHHHHHHHcccccccEEEccccEEccccHHHHccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHHccccHHcccEEcccEEEEEEcccccEccccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHccccccEcccccEEccEEEEccccccccccccEcccccEEEEEEEEEEcccccEccc
mpppppvqcnqtggcilknaygawgdrkdchvsnvtypttEEELRLAVAHANKNKLKVKTVSkfshtipklacpcsqsqsTLLISTakldsnididvanltvtadagvpLRQLIDRVeeenlsivaapywegvsvggvistgahgsswwgkggavHDHVIGLSLvvpakesegYAKIIRIEANDPLLDAAKVSLGLLGVISEvklslepgfkrsitfnftddahiEDIFMDhakkhefgditwypsrrtavyryddrvtlntrgdgvndfigfqdtsiLISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGfknnaliftgypivgrqgklqtsgaclysrrvdtscawdpringlffyettaifpankfKDFIRDVKKlrdlkpenfcgvdsynGFLIRFIKASsaylgqsedsivvdynyyraddastprlnQDVWEEVEQMAFFkygarphwakNRKLAFLNVQQKYANFSRFLAaknqmdpqnmfssewsdeilfgteaakfdgcalegqcicsedrhcspskgyfckpglvytEARVcrfsqspmtsiv
mpppppvqcnqTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFshtipklacpcsqSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVklslepgfkRSITFNFTDDAHIEDIFMDHAkkhefgditwypsrrtavYRYDDRVTlntrgdgvndfigfQDTSILISKSTRAAEKALEtaknangkctLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLrdlkpenfcgvdsyNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVcrfsqspmtsiv
MPPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCRFSQSPMTSIV
***********TGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRA***ALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQM***NMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCRF*********
*PPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCRFSQ*P***I*
*********NQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCRFS********
MPPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCRFSQSPMT***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCRFSQSPMTSIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query560 2.2.26 [Sep-21-2011]
Q8HXW0440 L-gulonolactone oxidase O yes no 0.742 0.945 0.244 9e-24
Q3ZC33440 L-gulonolactone oxidase O yes no 0.742 0.945 0.242 6e-22
P10867440 L-gulonolactone oxidase O yes no 0.753 0.959 0.227 8e-18
P58710440 L-gulonolactone oxidase O yes no 0.442 0.563 0.271 3e-13
Q90YK3440 L-gulonolactone oxidase O N/A no 0.394 0.502 0.251 4e-12
O47881600 L-galactono-1,4-lactone d N/A no 0.348 0.325 0.278 1e-11
Q9HDX8461 D-arabinono-1,4-lactone o yes no 0.375 0.455 0.282 3e-11
Q9SU56610 L-galactono-1,4-lactone d no no 0.35 0.321 0.260 4e-10
Q2QXY1583 L-galactono-1,4-lactone d no no 0.301 0.289 0.284 6e-10
O06804428 L-gulono-1,4-lactone dehy yes no 0.308 0.404 0.281 8e-10
>sp|Q8HXW0|GGLO_PIG L-gulonolactone oxidase OS=Sus scrofa GN=GULO PE=2 SV=3 Back     alignment and function desciption
 Score =  112 bits (280), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 194/494 (39%), Gaps = 78/494 (15%)

Query: 24  WGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLL 83
           W     C       PT+ EE+R  +A A +   +VK V    H+   +AC         +
Sbjct: 13  WAKTYGCCPEMYYQPTSVEEIREVLALARQQNKRVKVVGG-GHSPSDIAC-----TDGFM 66

Query: 84  ISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGA 143
           I   K++  + +D+    VT +AG+ L  L  ++++  L++        V+ GGVI +G 
Sbjct: 67  IHMGKMNRVLKVDMEKKQVTVEAGILLADLHPQLDKHGLALSNLGAVSDVTAGGVIGSGT 126

Query: 144 HGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEV 203
           H +    K G +   V+ L+L+ P    +G   +    +N  +  AA+V LG LGVI  V
Sbjct: 127 HNTG--IKHGILATQVVELTLLTP----DGTVLVCSESSNAEVFQAARVHLGCLGVILTV 180

Query: 204 KLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTR 263
            L   P F    T   +    + D    H KK E+    W+P        Y D  T    
Sbjct: 181 TLQCVPQFHLQETTFPSTLKEVLDNLDSHLKKSEYFRFLWFPHSENVSVIYQDH-TNKPP 239

Query: 264 GDGVNDF----IGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLG-----FKKLI 314
               N F    IGF     L+  S                  T    ++G     F  L+
Sbjct: 240 SSSANWFWDYAIGFYLLEFLLWIS------------------TFVPGLVGWINRFFFWLL 281

Query: 315 ANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDT-SCAWDPRINGLFFYETTAIFPA 373
            NG K N                     C  S ++ T  C +   +      +  AI P 
Sbjct: 282 FNGKKEN---------------------CNLSHKIFTYECRFKQHV------QDWAI-PR 313

Query: 374 NKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQ--SEDSIVVDYNYYRA 431
            K K+ + ++K + +  P+    V ++    +RF +A    L      DS  ++   YR 
Sbjct: 314 EKTKEALLELKAMLEAHPK----VVAHYPVEVRFTRADDILLSPCFQRDSCYMNIIMYRP 369

Query: 432 DDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDP 491
                PRL  D W   E +   K G RPHWAK       + ++ Y  F +F A + ++DP
Sbjct: 370 YGKDVPRL--DYWLAYETI-MKKVGGRPHWAKAHNCTRKDFEKMYPAFRKFCAIREKLDP 426

Query: 492 QNMFSSEWSDEILF 505
             MF + + +++ +
Sbjct: 427 TGMFLNAYLEKVFY 440
Oxidizes L-gulono-1,4-lactone to hydrogen peroxide and L-xylo-hexulonolactone which spontaneously isomerizes to L-ascorbate.
Sus scrofa (taxid: 9823)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 8
>sp|Q3ZC33|GGLO_BOVIN L-gulonolactone oxidase OS=Bos taurus GN=GULO PE=2 SV=3 Back     alignment and function description
>sp|P10867|GGLO_RAT L-gulonolactone oxidase OS=Rattus norvegicus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|P58710|GGLO_MOUSE L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|Q90YK3|GGLO_SCYTO L-gulonolactone oxidase OS=Scyliorhinus torazame GN=GULO PE=2 SV=1 Back     alignment and function description
>sp|O47881|GLDH_BRAOL L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Brassica oleracea PE=1 SV=1 Back     alignment and function description
>sp|Q9HDX8|ALO_SCHPO D-arabinono-1,4-lactone oxidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alo1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=GLDH PE=1 SV=1 Back     alignment and function description
>sp|Q2QXY1|GLDH2_ORYSJ L-galactono-1,4-lactone dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=GLDH2 PE=2 SV=1 Back     alignment and function description
>sp|O06804|GULDH_MYCTU L-gulono-1,4-lactone dehydrogenase OS=Mycobacterium tuberculosis GN=Rv1771 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
224141771556 predicted protein [Populus trichocarpa] 0.985 0.992 0.785 0.0
359476045590 PREDICTED: L-gulonolactone oxidase-like 0.992 0.942 0.762 0.0
255551012584 gulonolactone oxidase, putative [Ricinus 0.978 0.938 0.775 0.0
147771870592 hypothetical protein VITISV_031548 [Viti 0.992 0.939 0.760 0.0
296081869549 unnamed protein product [Vitis vinifera] 0.962 0.981 0.733 0.0
356565848596 PREDICTED: uncharacterized protein LOC10 0.998 0.937 0.701 0.0
15239081585 D-arabinono-1,4-lactone oxidase family p 0.980 0.938 0.682 0.0
297811269584 FAD-binding domain-containing protein [A 0.980 0.940 0.682 0.0
413936300583 hypothetical protein ZEAMMB73_861944 [Ze 0.987 0.948 0.604 0.0
242064850583 hypothetical protein SORBIDRAFT_04g01113 0.987 0.948 0.598 0.0
>gi|224141771|ref|XP_002324238.1| predicted protein [Populus trichocarpa] gi|222865672|gb|EEF02803.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/555 (78%), Positives = 489/555 (88%), Gaps = 3/555 (0%)

Query: 1   MPPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKT 60
           M PPPPVQCN  G C L N+YG W DRKDCHV ++TYPTTEEELRLAVAHAN+N LKVK 
Sbjct: 1   MLPPPPVQCNDNG-CTLYNSYGVWNDRKDCHVPSITYPTTEEELRLAVAHANQNNLKVKV 59

Query: 61  VSKFSHTIPKLACPC-SQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEE 119
           VS+FSHTIPKLACP  +Q  +++LIST K +S+I+ID ANL VTADAGV LR+LID VE 
Sbjct: 60  VSRFSHTIPKLACPDDAQHGNSMLISTLKYNSSIEIDTANLAVTADAGVGLRELIDEVER 119

Query: 120 ENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIR 179
             LS+V APYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGL+L+VPA+ESEGYAKIIR
Sbjct: 120 SGLSLVPAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLNLIVPARESEGYAKIIR 179

Query: 180 IEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFG 239
           I A DPLL+AAKVSLG+LGVIS+VKLSLEP FKRS+ +NFTDDAHIEDIFMDH KK+EF 
Sbjct: 180 IGAKDPLLNAAKVSLGMLGVISKVKLSLEPAFKRSVAYNFTDDAHIEDIFMDHGKKYEFA 239

Query: 240 DITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANG 299
           D+TWYPSR TAVYRYD RV L+T G+G  DF+GFQ  SI++SK+TR++EK LE+A+N NG
Sbjct: 240 DVTWYPSRHTAVYRYDYRVPLSTSGNGEYDFLGFQPNSIVVSKATRSSEKLLESARNVNG 299

Query: 300 KCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRI 359
           KC LA T +GFKKL+ANG KN  LIFTGYP+VG QGK+QTSG+CLYS ++DTSCAWDPRI
Sbjct: 300 KCALATTFVGFKKLVANGLKN-GLIFTGYPVVGHQGKMQTSGSCLYSTKIDTSCAWDPRI 358

Query: 360 NGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSE 419
            GLFFYETTAIFPA KF DF+RDVKKLRDLKPENFCGVD YNGFLIRFIKAS AYLGQSE
Sbjct: 359 GGLFFYETTAIFPALKFGDFLRDVKKLRDLKPENFCGVDIYNGFLIRFIKASQAYLGQSE 418

Query: 420 DSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANF 479
           DSIV+DYNYYRADD+STPRLNQDVWEEVEQMAFFKYGA+PHWAKNR LAFL++Q KY NF
Sbjct: 419 DSIVLDYNYYRADDSSTPRLNQDVWEEVEQMAFFKYGAKPHWAKNRNLAFLDLQHKYPNF 478

Query: 480 SRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGYFCKP 539
           S+FLAAK Q+DP+NMFS EWSDEIL+G EAAK DGCALEGQCICSED HCSP KGYFC+ 
Sbjct: 479 SKFLAAKKQLDPKNMFSGEWSDEILYGKEAAKADGCALEGQCICSEDIHCSPKKGYFCEQ 538

Query: 540 GLVYTEARVCRFSQS 554
           GLVY EARVCR+S S
Sbjct: 539 GLVYKEARVCRYSSS 553

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476045|ref|XP_002281460.2| PREDICTED: L-gulonolactone oxidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551012|ref|XP_002516554.1| gulonolactone oxidase, putative [Ricinus communis] gi|223544374|gb|EEF45895.1| gulonolactone oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147771870|emb|CAN71327.1| hypothetical protein VITISV_031548 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081869|emb|CBI20874.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356565848|ref|XP_003551148.1| PREDICTED: uncharacterized protein LOC100778616 [Glycine max] Back     alignment and taxonomy information
>gi|15239081|ref|NP_196715.1| D-arabinono-1,4-lactone oxidase family protein [Arabidopsis thaliana] gi|7573411|emb|CAB87714.1| putative protein [Arabidopsis thaliana] gi|332004310|gb|AED91693.1| D-arabinono-1,4-lactone oxidase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811269|ref|XP_002873518.1| FAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319355|gb|EFH49777.1| FAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|413936300|gb|AFW70851.1| hypothetical protein ZEAMMB73_861944 [Zea mays] Back     alignment and taxonomy information
>gi|242064850|ref|XP_002453714.1| hypothetical protein SORBIDRAFT_04g011130 [Sorghum bicolor] gi|241933545|gb|EES06690.1| hypothetical protein SORBIDRAFT_04g011130 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
TAIR|locus:2144251585 GulLO3 "L -gulono-1,4-lactone 0.980 0.938 0.685 1e-217
TAIR|locus:2044330590 GulLO5 "L -gulono-1,4-lactone 0.975 0.925 0.459 2.9e-135
TAIR|locus:2044340591 GulLO2 "L -gulono-1,4-lactone 0.973 0.922 0.462 4.8e-133
TAIR|locus:2044350603 GulLO6 "L -gulono-1,4-lactone 0.975 0.905 0.455 1.2e-131
TAIR|locus:2825463595 GulLO1 "L -gulono-1,4-lactone 0.983 0.926 0.452 2.2e-130
TAIR|locus:2161033577 GulLO4 "L -gulono-1,4-lactone 0.973 0.944 0.454 2e-127
TAIR|locus:2161103252 GulLO7 "L -gulono-1,4-lactone 0.412 0.916 0.495 6.2e-62
UNIPROTKB|Q8HXW0440 GULO "L-gulonolactone oxidase" 0.441 0.561 0.274 1.2e-23
RGD|620701440 Gulo "gulonolactone (L-) oxida 0.444 0.565 0.261 4.9e-22
UNIPROTKB|P10867440 Gulo "L-gulonolactone oxidase" 0.444 0.565 0.261 4.9e-22
TAIR|locus:2144251 GulLO3 "L -gulono-1,4-lactone ( L -GulL) oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2103 (745.4 bits), Expect = 1.0e-217, P = 1.0e-217
 Identities = 382/557 (68%), Positives = 464/557 (83%)

Query:     1 MPPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKT 60
             +PP PP++C+QTG C + NAYG W DRK CH +NVTYPTTEE+LR AVA+A ++ LKVKT
Sbjct:    25 VPPQPPIRCDQTG-CTVSNAYGTWPDRKTCHAANVTYPTTEEDLRKAVAYAAEHNLKVKT 83

Query:    61 VSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEE 120
             V+KFSHTIPKLACP S S + LLIST+K +S I+I+   LTVTAD+GV LR+LI++VE  
Sbjct:    84 VTKFSHTIPKLACP-SGSDA-LLISTSKYNSVIEIEPELLTVTADSGVSLRELIEKVEGA 141

Query:   121 NLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI 180
               SI  +PYWEGVS+GG+ISTG+HGSSW G+GG+VHDHV+G+SLVVPA +SEG+AK++R+
Sbjct:   142 GFSIGTSPYWEGVSIGGLISTGSHGSSWSGRGGSVHDHVVGISLVVPANQSEGFAKVVRL 201

Query:   181 EA--NDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEF 238
             E   +D LL+A KVSLG+LGVIS+VKLS+E  FKRS+T+NFT D  +EDIFM+H KK+EF
Sbjct:   202 EEGRDDTLLNAVKVSLGVLGVISKVKLSIEKAFKRSVTYNFTSDVALEDIFMEHGKKYEF 261

Query:   239 GDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNAN 298
             GDITWYPSR+TAVYRYD R  +N  G+GVNDF+GFQ   ILISK  RA EK  E++KN N
Sbjct:   262 GDITWYPSRKTAVYRYDIRAPVNVSGNGVNDFLGFQSNPILISKGVRALEKGFESSKNEN 321

Query:   299 GKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSR--RVDTSCAWD 356
             GKCT A T L +KKLI NG KN+ LIFTGYP++GRQGK+QTSG+CLYS   R+D +CAWD
Sbjct:   322 GKCTTADTTLAYKKLIGNGLKNSGLIFTGYPVIGRQGKIQTSGSCLYSSSIRIDVACAWD 381

Query:   357 PRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLG 416
             PR NGLFFYETTAIFP ++F+DF+ DVKKLRD+KPE  CG+D YNG  IRFIK S AYLG
Sbjct:   382 PRYNGLFFYETTAIFPVSRFRDFLLDVKKLRDMKPERLCGIDIYNGIFIRFIKGSKAYLG 441

Query:   417 QSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKY 476
             Q+EDS+V+D+NYYRADD  TPRLNQDV EE+EQMAF K+GA+PHW KNRK+ F  V+QK 
Sbjct:   442 QTEDSVVIDFNYYRADDELTPRLNQDVMEEMEQMAFVKHGAKPHWGKNRKVGFFGVKQKI 501

Query:   477 A-NFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAAKFDGCALEGQCICSEDRHCSPSKGY 535
               NF +FL  KN++DP+ MFSSEWSDEIL GTEA+K+DGCALEG C+CSE+RHC+PSKGY
Sbjct:   502 GPNFDKFLEVKNKLDPKKMFSSEWSDEILLGTEASKYDGCALEGNCVCSEERHCNPSKGY 561

Query:   536 FCKPGLVYTEARVCRFS 552
             FCK GLVYT+ARVCRFS
Sbjct:   562 FCKEGLVYTQARVCRFS 578
GO:0005739 "mitochondrion" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP
GO:0050105 "L-gulonolactone oxidase activity" evidence=IMP
GO:0055114 "oxidation-reduction process" evidence=IMP
TAIR|locus:2044330 GulLO5 "L -gulono-1,4-lactone ( L -GulL) oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044340 GulLO2 "L -gulono-1,4-lactone ( L -GulL) oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044350 GulLO6 "L -gulono-1,4-lactone ( L -GulL) oxidase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825463 GulLO1 "L -gulono-1,4-lactone ( L -GulL) oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161033 GulLO4 "L -gulono-1,4-lactone ( L -GulL) oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161103 GulLO7 "L -gulono-1,4-lactone ( L -GulL) oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXW0 GULO "L-gulonolactone oxidase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|620701 Gulo "gulonolactone (L-) oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P10867 Gulo "L-gulonolactone oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XVIII000083
hypothetical protein (556 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
TIGR01677557 TIGR01677, pln_FAD_oxido, plant-specific FAD-depen 0.0
PLN00107257 PLN00107, PLN00107, FAD-dependent oxidoreductase; 2e-89
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 4e-24
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 1e-21
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-17
pfam04030258 pfam04030, ALO, D-arabinono-1,4-lactone oxidase 5e-14
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 5e-13
PLN02465573 PLN02465, PLN02465, L-galactono-1,4-lactone dehydr 9e-13
TIGR01676541 TIGR01676, GLDHase, galactonolactone dehydrogenase 3e-11
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 1e-09
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 9e-06
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 1e-05
>gnl|CDD|233524 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase Back     alignment and domain information 
 Score =  878 bits (2270), Expect = 0.0
 Identities = 303/558 (54%), Positives = 387/558 (69%), Gaps = 10/558 (1%)

Query: 2   PPPPPVQCNQTGG-CILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKT 60
           PP  PV+C   G  C + NAYGA+ DR  C  +NV YP TE EL   VA A     K+K 
Sbjct: 1   PPDDPVRCVSGGANCTVSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKV 60

Query: 61  VSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEE 120
           V+++SH+IPKLACP   S   LLIST +L+  + +D   +TVT ++G+ LR+LI   E+ 
Sbjct: 61  VTRYSHSIPKLACP-DGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKA 119

Query: 121 NLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI 180
            L++  APYW G++VGG++ TGAHGSS WGKG AVHD+V+G+ LVVPA  +EG+AK+  +
Sbjct: 120 GLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179

Query: 181 EANDP--LLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEF 238
              D     +AAKVSLG+LGVIS+V L+L+P FKRS+T+   DD+  ED F+   KKHEF
Sbjct: 180 SEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSVTYTMRDDSDFEDQFVTFGKKHEF 239

Query: 239 GDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNAN 298
            DITWYPS+  AVYR DDRV +N  G+GVNDF+GF+ T I      RA E+  E ++NAN
Sbjct: 240 ADITWYPSQGKAVYRRDDRVPVNASGNGVNDFLGFRSTLIAAIAGIRALEETFERSRNAN 299

Query: 299 GKCTLAATVLGFKKLIANGFKN-NALIFTGYPIVGRQGKLQTSGACLYSR--RVDTSCAW 355
           GKC  A        L   G  N   +IFTGYP+VG QG++QTSG+CL S    + T+CAW
Sbjct: 300 GKCVTATITSAALFLPGYGLTNSGGIIFTGYPVVGSQGRMQTSGSCLDSPQDGLLTACAW 359

Query: 356 DPRINGLFFYETTAIF-PANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAY 414
           DPR  GLFF+  T +  P ++F+DF+ DVK+LRD++P++ CGV+ YNG LIR++KAS AY
Sbjct: 360 DPRYKGLFFFHQTTLSVPVSRFRDFVLDVKRLRDMEPKSLCGVELYNGILIRYVKASPAY 419

Query: 415 LGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQ 474
           LG+ ED++  D+ YYRA D  TPRL +DV EE+EQMAFFKYGA PHW KNR LAF  V +
Sbjct: 420 LGKEEDAVDFDFTYYRAKDPLTPRLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIR 479

Query: 475 KYANFSRFLAAKNQMDPQNMFSSEWSDEILFGTEAA--KFDGCALEGQCICSEDRHCSPS 532
           KY N  +FL  K+  DP+ +FSSEWSDEIL     A  K DGCALEG C+CSED HC+PS
Sbjct: 480 KYPNADKFLKVKDSYDPKGLFSSEWSDEILGIKGNASIKADGCALEGLCVCSEDAHCAPS 539

Query: 533 KGYFCKPGLVYTEARVCR 550
           KGY C+PG VY EARVC 
Sbjct: 540 KGYLCRPGKVYKEARVCT 557

This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown. Length = 557
>gnl|CDD|165679 PLN00107, PLN00107, FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|217852 pfam04030, ALO, D-arabinono-1,4-lactone oxidase Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 560
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 100.0
PLN00107257 FAD-dependent oxidoreductase; Provisional 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
PLN02441525 cytokinin dehydrogenase 100.0
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.98
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.96
KOG1231505 consensus Proteins containing the FAD binding doma 99.95
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.92
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.9
KOG1232511 consensus Proteins containing the FAD binding doma 99.9
PRK11183564 D-lactate dehydrogenase; Provisional 99.9
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.8
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.78
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.77
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.76
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.72
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.72
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.69
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.64
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.63
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.63
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.56
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.43
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.21
PF09129321 Chol_subst-bind: Cholesterol oxidase, substrate-bi 99.08
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.87
PRK09799258 putative oxidoreductase; Provisional 96.61
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.29
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 96.17
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 96.14
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 95.22
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 95.14
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 95.0
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 94.27
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 93.65
PLN00192 1344 aldehyde oxidase 93.24
COG1319284 CoxM Aerobic-type carbon monoxide dehydrogenase, m 92.77
PLN02906 1319 xanthine dehydrogenase 92.55
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 92.18
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 90.56
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=2.8e-117  Score=966.41  Aligned_cols=547  Identities=54%  Similarity=0.974  Sum_probs=489.7

Q ss_pred             CCCCCeeeC-CCCCceeeecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCC-CC
Q 008595            2 PPPPPVQCN-QTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQ-SQ   79 (560)
Q Consensus         2 ~~~~~~~c~-~~~~~~~~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~-~g   79 (560)
                      ||++||+|. +.++||+.|+|+||++++.+.|..|++|+|++||+++|+.|++++++|++++|+|||+++++++++. +|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~gg   80 (557)
T TIGR01677         1 PPDDPVRCVSGGANCTVSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGA   80 (557)
T ss_pred             CCCCCeecccCCCCceeecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCE
Confidence            799999997 7789999999999999999999999999999999999999999999999996689999998877532 35


Q ss_pred             ceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccce
Q 008595           80 STLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHV  159 (560)
Q Consensus        80 ~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V  159 (560)
                        ++|||++||+|+++|.++++|||+||+++.+|.+.|.++|+++++.+++.++||||+|+||+||++..+++|.++|+|
T Consensus        81 --vvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V  158 (557)
T TIGR01677        81 --LLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYV  158 (557)
T ss_pred             --EEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheE
Confidence              999999999999999999999999999999999999999999999999888999999999999998865789999999


Q ss_pred             eEEEEEecCCcccccceEEEcCCC-h-hhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEecChhHHHHHHHHHHhhcC
Q 008595          160 IGLSLVVPAKESEGYAKIIRIEAN-D-PLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHE  237 (560)
Q Consensus       160 ~~~~vV~~~G~~~g~~~v~~~~~~-~-~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e  237 (560)
                      +++++|+++|+.+|++++++++++ + ++|+|++||+|+|||||++|||++|.+.+..++...+++++.+.+.++.+.++
T Consensus       159 ~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~~~~~~~~~~l~~~~~~~~~~~~  238 (557)
T TIGR01677       159 VGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSVTYTMRDDSDFEDQFVTFGKKHE  238 (557)
T ss_pred             EEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccceEEEEcCCHHHHHHHHHHhhcCCe
Confidence            999999999977777779888874 3 57999999999999999999999999998888888888889888999999999


Q ss_pred             eeeEEEecCCCcEEEEecCCcccCCCCCCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhhhhhhhhhhhhhccc
Q 008595          238 FGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANG  317 (560)
Q Consensus       238 ~~~~~w~P~~~~~~~r~~dr~p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~g  317 (560)
                      |.+++|+|++++++++..+|++...+++..+++++++.+.+......+..++.++...+..++|..+...+.......++
T Consensus       239 ~~~f~w~P~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (557)
T TIGR01677       239 FADITWYPSQGKAVYRRDDRVPVNASGNGVNDFLGFRSTLIAAIAGIRALEETFERSRNANGKCVTATITSAALFLPGYG  318 (557)
T ss_pred             EEEEEEECCCCeEEEEecCcCCCCCCcchhhhhccccccchhhhhhhhhhhHHHhhhcccccceeccccccchhhhhccc
Confidence            99999999999999999999876555666667777765544444445666666666666677777655444433344345


Q ss_pred             cc-cCCeeeccCcccccccceeeccccccccccCC--ccccCccccC-cceEEEEEEEecccHHHHHHHHHHHHHcCCCC
Q 008595          318 FK-NNALIFTGYPIVGRQGKLQTSGACLYSRRVDT--SCAWDPRING-LFFYETTAIFPANKFKDFIRDVKKLRDLKPEN  393 (560)
Q Consensus       318 ~~-~~~~~~~g~~vvg~~~~~~~s~~c~~~~~~~~--~~~w~~r~~~-~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~  393 (560)
                      +. +++..+++++++|++++||+++.|..++...+  .|+|+++.++ .+|+||||+||++++.++|++|+++++.++..
T Consensus       319 ~~~~~~~~~~~~~~~g~s~~v~~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~e~EyavP~e~~~~al~~vr~~~~~~~~~  398 (557)
T TIGR01677       319 LTNSGGIIFTGYPVVGSQGRMQTSGSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVPVSRFRDFVLDVKRLRDMEPKS  398 (557)
T ss_pred             ccccccccccCCceecchHhhcccccccccccccccccCccccccccccceeEEEEEeeHHHHHHHHHHHHHHHHhcccc
Confidence            44 34455778899999999999999999866555  7999988777 88999999999999999999999999988877


Q ss_pred             cCCccccCceEEeeccCCCCCCCCCCCeEEEEEEEeccCCCCCCcccHHHHHHHHHHHHhhcCCcccccCCCccchhHHH
Q 008595          394 FCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQ  473 (560)
Q Consensus       394 ~~~~~~~~~i~~Rfv~~s~a~Ls~~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~  473 (560)
                      +|.+++++||++||+++|++||||+||+++|+|++|++.+++.|+.|+++|+++|+|++.+|||||||||+|++++++++
T Consensus       399 ~~~~~~~fpievR~v~aDd~wLSp~rds~~i~~~~~~~~~~~~~~~~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~  478 (557)
T TIGR01677       399 LCGVELYNGILIRYVKASPAYLGKEEDAVDFDFTYYRAKDPLTPRLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVI  478 (557)
T ss_pred             cCceeeecCeEEEEecCCccccCCCCceEEEEEEEecCCCCcccchHHHHHHHHHHHHHhhcCCCCCccccccchHHHHH
Confidence            78888999999999999999999999999999999999999999999999999999878999999999999999999999


Q ss_pred             HhccCHHHHHHHHHhcCCCCCCCChhhhhhcCCC--CccCCCCCCCcceeecCCCCCCCCCCCccccCCcccccccccc
Q 008595          474 QKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGT--EAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCR  550 (560)
Q Consensus       474 ~~YP~~~~F~~~r~~~DP~g~F~n~~~~~~lg~~--~~~~~~~c~~~~~c~c~~d~hc~~~~~~~c~~~~~~~~~~~c~  550 (560)
                      ++||+|++|+++|+++||+|+|+|+|++++||..  +.++.+|||+||+|+|++|+||||++|||||||+||+||||||
T Consensus       479 ~~YP~~~dF~alR~~~DP~g~F~N~yl~~l~~~~~~~~~~~~~c~~~~~c~c~~d~hc~~~~~~~c~~~~~~~e~~~c~  557 (557)
T TIGR01677       479 RKYPNADKFLKVKDSYDPKGLFSSEWSDEILGIKGNASIKADGCALEGLCVCSEDAHCAPSKGYLCRPGKVYKEARVCT  557 (557)
T ss_pred             HhCCCHHHHHHHHHhcCCCCccCCHHHHHHhCcCCCccccCCCccccceEecCCCCCCCCCCCccccCCcccCcccccC
Confidence            9999999999999999999999999999999976  5569999999999999999999999999999999999999997

This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
2vfr_A422 Alditol Oxidase From Streptomyces Coelicolor A3(2): 2e-07
3js8_A540 Solvent-Stable Cholesterol Oxidase Length = 540 4e-07
4bca_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 4e-07
4bby_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 4e-07
4bc7_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 4e-07
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native Enzyme Length = 422 Back     alignment and structure 
Iteration: 1

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 34  NVTY-------PTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLIST 86
           N+TY       P + + LR  VA    +  +V+ +    H+  ++A P       +L+S 
Sbjct: 16  NITYTAKELLRPHSLDALRALVA----DSARVRVLGS-GHSFNEIAEP---GDGGVLLSL 67
Query: 87  AKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGS 146
           A L S +D+D A  TV    GV   +L   V    L++        +SV G ++TG HGS
Sbjct: 68  AGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVATGTHGS 127
Query: 147 SWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLS 206
              G G      V+    +V A  S      + I   D     A  SLG LGV++ + L 
Sbjct: 128 ---GVGNGSLASVVREVELVTADGS-----TVVIARGDERFGGAVTSLGALGVVTSLTLD 179
Query: 207 LEPGFK 212
           LEP ++
Sbjct: 180 LEPAYE 185
>pdb|3JS8|A Chain A, Solvent-Stable Cholesterol Oxidase Length = 540 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 7e-83
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 2e-71
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-67
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 8e-46
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-16
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 3e-12
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 6e-11
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-09
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-09
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-09
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 5e-09
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-05
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-05
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-05
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 2e-05
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 6e-05
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 7e-05
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 7e-05
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
 Score =  268 bits (685), Expect = 7e-83
 Identities = 85/576 (14%), Positives = 168/576 (29%), Gaps = 96/576 (16%)

Query: 2   PPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTV 61
            P PP         + + AY  W        + V  P T +++      A+++  K++  
Sbjct: 8   LPTPPNFP--NDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPR 65

Query: 62  SKFSHTIPKLACP--CSQSQSTLLISTAKLDS-NIDIDVANLTVTADAGVPLRQLIDRVE 118
                    L      +  +  L  +   L+   ++      TVTA AG  +  ++  ++
Sbjct: 66  GA-MAGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQ 124

Query: 119 EENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKG---------GAVHDHVIGLSLVVPAK 169
           + +L     P    +S+GG ++  AHG++    G         G++ + V  L+ VV   
Sbjct: 125 KHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWN- 183

Query: 170 ESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFK-RSITFN-------FTD 221
              G    +     +       ++      ++ V +   P F+ R  ++        F  
Sbjct: 184 ---GTTYALETYQRNDPRITPLLTNLGRCFLTSVTMQAGPNFRQRCQSYTDIPWRELFAP 240

Query: 222 DAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILIS 281
                  F     +    +  WYP       +                 +G   + +   
Sbjct: 241 KGADGRTFEKFVAESGGAEAIWYPFTEKPWMKVWTVSPTKPDSSNEVGSLGSAGSLVGKP 300

Query: 282 KSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSG 341
              R          + N    L   +      I  G    A      P+ G     + + 
Sbjct: 301 PQAREVSGPYNYIFSDN----LPEPITDMIGAINAGNPGIA------PLFG-PAMYEITK 349

Query: 342 ACLYSRRVDTSCAWDPRINGLFFY-ETTAIFPANKF-------------KDFIRDVKKLR 387
             L +   + +  W    +  F+   TT                      DF     +  
Sbjct: 350 LGLAAT--NANDIWGWSKDVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWFHERI 407

Query: 388 DLKPEN------------FCGVD-----SYNGFLIRFIKASSAYLGQSEDSIVVDYNYYR 430
           +                  CG+D              I A+       +  + +  N   
Sbjct: 408 EFYRAKGEFPLNGPVEIRCCGLDQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLG 467

Query: 431 ADDASTPRLNQDVWEEVEQMAFFKYG-----ARPHWAKN-----------------RKLA 468
                TP + +  + E+EQ     Y       RP W+K                   +  
Sbjct: 468 --VPGTPGMFE-FYREMEQWMRSHYNNDDATFRPEWSKGWAFGPDPYTDNDIVTNKMRAT 524

Query: 469 FLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEIL 504
           ++       N+    A  NQ+DP  +F++ + D++L
Sbjct: 525 YIEGVPTTENWDTARARYNQIDPHRVFTNGFMDKLL 560
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 100.0
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 99.98
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.98
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 99.97
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.97
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 99.97
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 99.97
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 99.97
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 99.97
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 99.97
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.94
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.93
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.87
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.87
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.85
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.85
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.77
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.76
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.23
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.48
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.41
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 97.04
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.98
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 95.7
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 93.5
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 92.59
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 87.07
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 80.38
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
Probab=100.00  E-value=3.1e-66  Score=561.90  Aligned_cols=449  Identities=18%  Similarity=0.210  Sum_probs=342.6

Q ss_pred             eeeecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCC---CCceEEEEcC-CCCC
Q 008595           16 ILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQ---SQSTLLISTA-KLDS   91 (560)
Q Consensus        16 ~~~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~---~g~~vvI~l~-~ln~   91 (560)
                      .....|+||++++.+.|..+++|+|++||+++|+.|++++.+|+++ |+|||+++++++++.   +|  ++|||+ +||+
T Consensus        14 ~y~~~~~nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~~~~pv~v~-GgGhs~~~l~~~gG~~~~~G--VvIdls~~Ln~   90 (540)
T 3js8_A           14 LYKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRAR-GMMHNWSPLTLAAGVSCPAV--VLLDTTRYLTA   90 (540)
T ss_dssp             CEEEEEECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEE-CSCCCSSCSSCCTTCSSCSE--EEEETTTTCCC
T ss_pred             hhcceeeccccccCCCccEEEEcCCHHHHHHHHHHHHHcCCeEEEE-eCCCCcccccccCCCCCCCe--EEEECcCcCCC
Confidence            4556789999999999999999999999999999999999999999 999999877776532   45  999995 7999


Q ss_pred             CeeeeCC--CcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCC---------CCCCcccccee
Q 008595           92 NIDIDVA--NLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWW---------GKGGAVHDHVI  160 (560)
Q Consensus        92 i~~id~~--~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~---------~~~G~~~d~V~  160 (560)
                      | ++|++  .++|+||||+++.+|.++|.++|++++++++++.+||||+|+||+||++..         .++|.++|+|+
T Consensus        91 I-~vD~~~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~  169 (540)
T 3js8_A           91 M-SIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVL  169 (540)
T ss_dssp             E-EEECSSSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSCSCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEE
T ss_pred             E-EECCCCCccEEEEccCCCHHHHHHHHHHcCCEEEecCCCCCeEEcccccCCCCcccccccccccccccccccHHHhEE
Confidence            8 99985  689999999999999999999999999999988799999999999998631         36899999999


Q ss_pred             EEEEEecCCcccccceEEEcCCChhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEE-ecChhHHHH-------HHHHH
Q 008595          161 GLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFN-FTDDAHIED-------IFMDH  232 (560)
Q Consensus       161 ~~~vV~~~G~~~g~~~v~~~~~~~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~-~~~~~~~~~-------~~~~~  232 (560)
                      ++++|+++|++..+. ++++++++++|+++++|+|. ||||++||+++|.++...+.. ..+++++.+       .+.++
T Consensus       170 ~levV~adG~~~~~~-i~~~s~~~~DL~a~r~G~G~-gIVTevtlrl~P~~~l~~~~~~~~~~~e~l~~~~~~~~~~~~~  247 (540)
T 3js8_A          170 SLTAVVYDKASGAYA-LRKFARNDPQIAPLLAHVGR-SLIVEATLQAAPNQRLRCQSWFNIPYGEMFAAAGSGGRTFASY  247 (540)
T ss_dssp             EEEEEEEETTTTEEE-EEEEETTSGGGHHHHTCTTS-SCEEEEEEEEEECCEEEEEEECCSCHHHHTCCSSCCSSCHHHH
T ss_pred             EEEEEcCCCCCceee-EEEeCCCChhHHHHHhcCCC-eEEEEEEEEEEECCceEEEEEecCCHHHHHhhcccccccHHHH
Confidence            999999999632221 56666666777788888898 599999999999999876654 478888886       79999


Q ss_pred             HhhcCeeeEEEecCCCcEEEEecCCcccCCCCCCC-Cccc-ccccchhhhhhhhHHHHHHHHHhcccccchhhhhhhhhh
Q 008595          233 AKKHEFGDITWYPSRRTAVYRYDDRVTLNTRGDGV-NDFI-GFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGF  310 (560)
Q Consensus       233 ~~~~e~~~~~w~P~~~~~~~r~~dr~p~~~p~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~  310 (560)
                      +++++|++++|||++++++++.+++.|...++... .+.. .|... .    ....+.+.+..... .+.....+.    
T Consensus       248 ~~~~~~~e~~WfP~t~~~~~k~~~~~~~~p~~~~~~~~p~~~~~~d-~----l~~~~~~~~~~~~~-~~~p~~~p~----  317 (540)
T 3js8_A          248 LDSAGRVEAIWFPFTSNPWLKVWTVTPNKPLFSRQTDKPFNYPFSD-N----LPDEVTDLANKILS-LGDGKLTPA----  317 (540)
T ss_dssp             HHHTSEEEEEECTTCSSCEEEEEEECSSCCTTCEECSSSCCCHHHH-S----CCHHHHHHHHHHHT-SCCGGGHHH----
T ss_pred             HhccCeEEEEEECCCCceEEEEccCCCCCCCccccccCCccccccc-c----cchHHHHHHHHHhh-cCCcccchh----
Confidence            99999999999999999988887665544333211 1000 00000 0    01112222211110 000111111    


Q ss_pred             hhhhccccccCCeeec-cCcccccc--cceeeccccccccccCCccccCccccCcceEEEEEEE--ecccHHHHHHHHHH
Q 008595          311 KKLIANGFKNNALIFT-GYPIVGRQ--GKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIF--PANKFKDFIRDVKK  385 (560)
Q Consensus       311 ~~~~~~g~~~~~~~~~-g~~vvg~~--~~~~~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~i--P~~~~~~~i~~v~~  385 (560)
                      +....++....+...+ ...++|++  +++|.+                  .+..+|.++||+|  |++++.++|+++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~d~~g~s~~~~~~~~------------------~~~~r~~~~eyav~~p~~~~~~~~~~~~~  379 (540)
T 3js8_A          318 FGKAQFAAASAGLVATASWDLWGWSKNLLLYVK------------------PTTLRVTANGYAVLTRRENVQRVLNEFVT  379 (540)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEHHHHHCCCC------------------TTSCCCEEBCEEEEECGGGHHHHHHHHHH
T ss_pred             HHhHHHHhhhccccccccccccccccceEEEec------------------CccceeEeeEEeecCcHHHHHHHHHHHHH
Confidence            1222222211111111 12456677  676642                  3347789999999  99999999999999


Q ss_pred             HHHcC---CCCcCCccccCceEEeeccCCCCC-----------CCC--CCC-------eEEEEEEEeccCCCCCCcccH-
Q 008595          386 LRDLK---PENFCGVDSYNGFLIRFIKASSAY-----------LGQ--SED-------SIVVDYNYYRADDASTPRLNQ-  441 (560)
Q Consensus       386 l~~~~---~~~~~~~~~~~~i~~Rfv~~s~a~-----------Ls~--~~d-------~~~i~i~~y~~~~~~~p~~~~-  441 (560)
                      +++..   .....++++++|||+|++++|+.|           ||+  +|+       +++|+++.|++.+      ++ 
T Consensus       380 ~~~~~~~~~~~~~~~~v~~pvEvR~~~~D~~~~~~~~~~~~p~LS~~~~r~~~p~~d~~~~i~~~~~~~~p------~~~  453 (540)
T 3js8_A          380 FYQARVQAYQQQGRYPMNGPVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGTP------YAN  453 (540)
T ss_dssp             HHHHHHHHHHHTTCCCCCSCEEEEEECCCCGGGSSSTTCCCCTTCTTCCCTTCTTCCEEEEEEEEECTTCT------THH
T ss_pred             HHHhhhhhhhhccCcccccceEEEEecCCchhhccccccCCcccCccCCCCCCCCcceEEEEEeeecCCCc------cHH
Confidence            88720   001124678999999999999999           687  466       9999999999643      56 


Q ss_pred             HHHHHHHHHHHhhcCC-----cccccCC-------CccchhHHHHh----c-------cCHHHHHHHHHhcCCCCCCCCh
Q 008595          442 DVWEEVEQMAFFKYGA-----RPHWAKN-------RKLAFLNVQQK----Y-------ANFSRFLAAKNQMDPQNMFSSE  498 (560)
Q Consensus       442 ~~~~eie~~~~~k~gG-----rPHWgK~-------~~~~~~~~~~~----Y-------P~~~~F~~~r~~~DP~g~F~n~  498 (560)
                      +||+++||++..+|||     ||||||+       |+.+.+.+++.    |       |+|++|+++|+++||+|+|+|+
T Consensus       454 ~~~~~~E~~~~~~~~g~~~~~RPhW~K~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~DP~~~F~n~  533 (540)
T 3js8_A          454 QFYREIEQWIEANFNGSYAAVRPEWSKGWGYTDQAAWADSAMLQTTIPNAFRAGQPAAANWDAAKAALAAYDPYRLFSSP  533 (540)
T ss_dssp             HHHHHHHHHHHHHSCTTTEEEEECTTSBCSCCSSCTTCCHHHHHTHHHHHTTTTCCGGGSHHHHHHHHHHHCTTCCSCCH
T ss_pred             HHHHHHHHHHHHhcCCCccccCcccccccccccccccCCHHHHHhhchhhhccCCCCCCCHHHHHHHHHhcCCCcccCCH
Confidence            5999999995555999     9999999       55577888888    9       9999999999999999999999


Q ss_pred             hhhhhc
Q 008595          499 WSDEIL  504 (560)
Q Consensus       499 ~~~~~l  504 (560)
                      |+|++|
T Consensus       534 ~l~~ll  539 (540)
T 3js8_A          534 LLDSLG  539 (540)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            999987
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 560
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 8e-15
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 6e-09
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 2e-04
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 0.002
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 71.6 bits (174), Expect = 8e-15
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 1   MPPPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKT 60
           +P PP          + + AY  W        + V  P T +++      A+++  K++ 
Sbjct: 3   LPTPPNFP---NDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRP 59

Query: 61  V-SKFSHTIPKLACPCSQSQSTLLISTAKLDSNI-DIDVANLTVTADAGVPLRQLIDRVE 118
             +    T   +    +  +  L  +   L+    +      TVTA AG  +  ++  ++
Sbjct: 60  RGAMAGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQ 119

Query: 119 EENLSIVAAPYWEGVSVGGVISTGAHGSSWWG---------KGGAVHDHVIGLSLVVPAK 169
           + +L     P    +S+GG ++  AHG++              G++ + V  L+ VV   
Sbjct: 120 KHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVW-- 177

Query: 170 ESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEP 209
              G    +     +       ++      ++ V +   P
Sbjct: 178 --NGTTYALETYQRNDPRITPLLTNLGRCFLTSVTMQAGP 215
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.97
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.95
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.81
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.81
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.8
d2i0ka1340 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.07
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 97.11
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.45
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 96.43
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 96.37
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 96.12
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 96.01
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 95.99
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 90.03
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 87.97
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=8.1e-34  Score=272.72  Aligned_cols=182  Identities=18%  Similarity=0.279  Sum_probs=163.6

Q ss_pred             eeecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhC---CCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCC-
Q 008595           17 LKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKN---KLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSN-   92 (560)
Q Consensus        17 ~~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~---~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i-   92 (560)
                      ..+..++|.+.....|.+|++|+|++||+++|++|+++   +.+|+++ ++|||+.+.+..  .++  ++|||++||++ 
T Consensus        15 ~~~~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~r-ggGhs~~g~s~~--~~~--ividl~~l~~i~   89 (206)
T d1w1oa2          15 TAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFR-GRGHSLMGQAFA--PGG--VVVNMASLGDAA   89 (206)
T ss_dssp             HHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEE-SSCCCSSSTTCC--TTS--EEEEGGGGGCSS
T ss_pred             hhhhEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEE-CCCCCcccCccc--CCC--Eeeeccccceee
Confidence            33455789888899999999999999999999999997   5789888 899998887654  246  99999999998 


Q ss_pred             ----eeeeCCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecC
Q 008595           93 ----IDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPA  168 (560)
Q Consensus        93 ----~~id~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~  168 (560)
                          +++|++..+++||||+++.||.++|.++|+.++..++...+||||+++++++|.... +||.++|+|+++++|+++
T Consensus        90 ~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~-~~G~~~d~v~~~evV~~~  168 (206)
T d1w1oa2          90 APPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAF-RHGPQISNVLEMDVITGH  168 (206)
T ss_dssp             SSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHH-HHCCGGGSEEEEEEEETT
T ss_pred             eceeEEEecCCCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceeccc-cccceeeeeeEEEEEcCC
Confidence                789999999999999999999999999999998888888899999999999888775 789999999999999999


Q ss_pred             CcccccceEEEcCCC--hhhHHHHHhCCCCeEEEEEEEEEeeeC
Q 008595          169 KESEGYAKIIRIEAN--DPLLDAAKVSLGLLGVISEVKLSLEPG  210 (560)
Q Consensus       169 G~~~g~~~v~~~~~~--~~~f~a~~gs~G~lGVIt~vtl~l~p~  210 (560)
                      |+      +++++++  .++|++++||+|+|||||++|||++|.
T Consensus       169 G~------~~~~s~~~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         169 GE------MVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SC------EEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             Cc------EEEECCCCCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            99      8888763  456999999999999999999999995
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure