Citrus Sinensis ID: 008608

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
MLMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVPLPH
cccccccccccccccccccEEEEEEcccccEEEEEEEEcccccEEccccccccccccccccccEEEEEEcccccEEEEEEEEEEccccccccccccccccccHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHcccccccEEEEEEEccccccccEEEEEEEEEccccccccccccEEEEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccc
ccHHHccccccccccccHHHHHHHHHccccEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEHHcccccccccccEccccccHHHHHHHHHHHHcccEEEEEEccccccccEEEEHHHHHHHHccccEEEEEEEEEEccccccccccEEEEEEcccccccccccccEEEEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mlmsvfhpwldmsrqpptqelaakdlhgnewrfrhifrgqprrhllqsgWSVFvsskrlvagdafiflrgengelRVGVRRAMrqqgnvpssvisshsMHLGVLATAWHAVSTGTMftvyykprtspsefivpyDQYMESIKNNYSIGMrfkmrfegeeapeqrftgtivgiedadpqrwrdskwrclkvrwdetstiprpervslwkiepalappalnslpmprpkrprsnmlpsspdssvltregssklnvdpssatgfsrvlqgqEFSTLRGnfaeresnesdtaeksvvwppslddekidVVSASrrygsenwvppgrhepvytdllsgfganadpshgfsspfadavpvrksvldqegkfnlvarpwslmpsgpslkmpesnakvpvqggdvnyqvrgnvryggfgdypmlngnrvehshgnwlmpplppsnfensahsrelmpksamvqdqeagkskdcklfgiplfsnhvmpepvvshrntmnepagnldQQFRAfesdqksdhsksskladdnqvfnehekpsqpsqthtkdvrsktqcgstrsctkvplph
mlmsvfhpwldmsrqpPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPeqrftgtivgiedadpqrwrdskwrclkvrwdetstiprpervslwkiepalappalnslpmprpkrprsnmlpsspdssvltregssklnvdpssatgfsrvlqgqeFSTLRGNfaeresnesdtaeksvvwppslddekiDVVSASRrygsenwvppgrHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNehekpsqpsqthtkdvrsktqcgstrsctkvplph
MLMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEpalappalnslpmpRPKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFEsdqksdhsksskLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVPLPH
************************DLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA**********VISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEG****EQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIE*********************************************************************************************************NWV****HEPVYTDLLSGFG**********************VLDQEGKFNLVARPW*********************GGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW************************************CKLFGIPLFSNHV***********************************************************************************
MLMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPALA***************************************************************************************************************************************************************************************************************************************************************************************************************************************************TKVP***
MLMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRP******************************SATGFSRVLQGQEFSTLRGNF**************VVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPK***********SKDCKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAF**************ADDNQVFNE**********************************
MLMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPR********************************************************************W******************GSENWVPP***EPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKM************DVN***RGNVRYGGFGDY**L**********************************************KDCKLFGIPLFSN*************************************************************************************
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MLMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVPLPH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query560 2.2.26 [Sep-21-2011]
Q94JM3 859 Auxin response factor 2 O yes no 0.955 0.622 0.644 0.0
Q5JK20 808 Auxin response factor 4 O yes no 0.946 0.655 0.508 1e-137
Q2QQX6 841 Auxin response factor 24 no no 0.95 0.632 0.513 1e-136
A2ZET6 853 Auxin response factor 23 N/A no 0.960 0.630 0.522 1e-135
Q2R3F5 853 Auxin response factor 23 no no 0.960 0.630 0.521 1e-133
Q8L7G0665 Auxin response factor 1 O no no 0.408 0.344 0.692 2e-89
Q6YVY0678 Auxin response factor 7 O no no 0.460 0.380 0.608 3e-87
Q0JCZ4673 Auxin response factor 9 O no no 0.408 0.340 0.681 4e-86
Q9XED8638 Auxin response factor 9 O no no 0.392 0.344 0.641 1e-79
Q9C5W9602 Auxin response factor 18 no no 0.392 0.365 0.637 1e-78
>sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2 Back     alignment and function desciption
 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/562 (64%), Positives = 423/562 (75%), Gaps = 27/562 (4%)

Query: 8   PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
           P LDMSRQPPTQEL AKDLH NEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF
Sbjct: 191 PPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 250

Query: 68  LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
           LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+STGTMFTVYYKPRTSP
Sbjct: 251 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSP 310

Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
           SEFIVP+DQYMES+KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE++DP RW  SKWR 
Sbjct: 311 SEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRS 370

Query: 188 LKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDSSVLTREG 247
           LKVRWDETS+IPRP+RVS WK+EPALAPPAL+ +PMPRPKRPRSN+ PSSPDSS+LTREG
Sbjct: 371 LKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREG 430

Query: 248 SSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVS 307
           ++K N+DP  A+G SRVLQGQE+STLR      ES E D  E SVVW  S DD+K+DVVS
Sbjct: 431 TTKANMDPLPASGLSRVLQGQEYSTLRTKHT--ESVECDAPENSVVWQSSADDDKVDVVS 488

Query: 308 ASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQE 362
            SRRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D E
Sbjct: 489 GSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSE 548

Query: 363 GKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVE 422
           GKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV+Y    +YP+LNG   E
Sbjct: 549 GKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTE 603

Query: 423 HSHGNWLMPPLPPSNFENSAH------SRELMPKSAMVQDQEAGKSKD--CKLFGIPLFS 474
           ++ GNW + P   + +E   +      +RE + K      +E  KS++  C+LFGIPL +
Sbjct: 604 NAGGNWPIRPRALNYYEEVVNAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTN 663

Query: 475 NHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNEHEKPSQPS 534
           N    +  +S RN +N+ AG    Q  + +    SD SK SK  +D++   E  +P Q +
Sbjct: 664 NMNGTDSTMSQRNNLNDAAGLT--QIASPKVQDLSDQSKGSKSTNDHR---EQGRPFQTN 718

Query: 535 QTHTKDVRSKTQCGSTRSCTKV 556
             H KD ++KT   S+RSCTKV
Sbjct: 719 NPHPKDAQTKT--NSSRSCTKV 738
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5JK20|ARFD_ORYSJ Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1 Back     alignment and function description
>sp|Q2QQX6|ARFX_ORYSJ Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1 Back     alignment and function description
>sp|A2ZET6|ARFW_ORYSI Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1 Back     alignment and function description
>sp|Q2R3F5|ARFW_ORYSJ Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2 Back     alignment and function description
>sp|Q8L7G0|ARFA_ARATH Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 Back     alignment and function description
>sp|Q6YVY0|ARFG_ORYSJ Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1 Back     alignment and function description
>sp|Q0JCZ4|ARFI_ORYSJ Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1 Back     alignment and function description
>sp|Q9XED8|ARFI_ARATH Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5W9|ARFR_ARATH Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
359386136 846 auxin-response factor [Citrus sinensis] 0.980 0.648 0.994 0.0
30027167 840 auxin response factor-like protein [Mang 0.978 0.652 0.768 0.0
225456475 862 PREDICTED: auxin response factor 2 [Viti 0.975 0.633 0.767 0.0
147791931 946 hypothetical protein VITISV_040395 [Viti 0.978 0.579 0.764 0.0
224122162 854 predicted protein [Populus trichocarpa] 0.964 0.632 0.741 0.0
255540071 844 Auxin response factor, putative [Ricinus 0.914 0.606 0.746 0.0
356513463 858 PREDICTED: auxin response factor 2-like 0.967 0.631 0.712 0.0
224136320 852 predicted protein [Populus trichocarpa] 0.957 0.629 0.733 0.0
356516493 843 PREDICTED: auxin response factor 2-like 0.969 0.644 0.703 0.0
356508865 843 PREDICTED: auxin response factor 2-like 0.966 0.641 0.711 0.0
>gi|359386136|gb|AEV43357.1| auxin-response factor [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/549 (99%), Positives = 547/549 (99%)

Query: 8   PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
           P LDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF
Sbjct: 178 PPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 237

Query: 68  LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
           LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP
Sbjct: 238 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 297

Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
           SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC
Sbjct: 298 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 357

Query: 188 LKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDSSVLTREG 247
           LKVRWDETSTIPRPERVS WKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDSSVLTREG
Sbjct: 358 LKVRWDETSTIPRPERVSPWKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDSSVLTREG 417

Query: 248 SSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVS 307
           SSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVS
Sbjct: 418 SSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVS 477

Query: 308 ASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNL 367
           ASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNL
Sbjct: 478 ASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLDQEGKFNL 537

Query: 368 VARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGN 427
           VARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGN
Sbjct: 538 VARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGN 597

Query: 428 WLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRN 487
           WLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRN
Sbjct: 598 WLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRN 657

Query: 488 TMNEPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQC 547
           TMNEPAGNLDQQFRAFESDQKS+HSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQC
Sbjct: 658 TMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQC 717

Query: 548 GSTRSCTKV 556
           GSTRSCTKV
Sbjct: 718 GSTRSCTKV 726

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|30027167|gb|AAP06759.1| auxin response factor-like protein [Mangifera indica] Back     alignment and taxonomy information
>gi|225456475|ref|XP_002284543.1| PREDICTED: auxin response factor 2 [Vitis vinifera] gi|297734502|emb|CBI15749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147791931|emb|CAN67897.1| hypothetical protein VITISV_040395 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122162|ref|XP_002318767.1| predicted protein [Populus trichocarpa] gi|222859440|gb|EEE96987.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540071|ref|XP_002511100.1| Auxin response factor, putative [Ricinus communis] gi|223550215|gb|EEF51702.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356513463|ref|XP_003525433.1| PREDICTED: auxin response factor 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224136320|ref|XP_002322300.1| predicted protein [Populus trichocarpa] gi|222869296|gb|EEF06427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356516493|ref|XP_003526928.1| PREDICTED: auxin response factor 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356508865|ref|XP_003523174.1| PREDICTED: auxin response factor 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
TAIR|locus:2174013 859 ARF2 "auxin response factor 2" 0.955 0.622 0.615 3.7e-174
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.537 0.452 0.559 1.7e-84
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.489 0.429 0.538 7.4e-82
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.487 0.453 0.535 3.7e-74
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.462 0.328 0.492 2e-72
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.439 0.395 0.559 2.3e-72
TAIR|locus:2014731605 ARF14 "auxin response factor 1 0.405 0.375 0.506 1.9e-66
TAIR|locus:2036288598 ARF22 "auxin response factor 2 0.357 0.334 0.556 1.1e-64
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.412 0.247 0.545 5.3e-64
TAIR|locus:2026145593 ARF12 "auxin response factor 1 0.405 0.382 0.502 4.2e-63
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1692 (600.7 bits), Expect = 3.7e-174, P = 3.7e-174
 Identities = 346/562 (61%), Positives = 404/562 (71%)

Query:     8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
             P LDMSRQPPTQEL AKDLH NEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF
Sbjct:   191 PPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 250

Query:    68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
             LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+STGTMFTVYYKPRTSP
Sbjct:   251 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSP 310

Query:   128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
             SEFIVP+DQYMES+KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE++DP RW  SKWR 
Sbjct:   311 SEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRS 370

Query:   188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLTREG 247
             LKVRWDETS+IPRP+RVS WK+E              RPKRPRSN+ PSSPDSS+LTREG
Sbjct:   371 LKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREG 430

Query:   248 SSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVS 307
             ++K N+DP  A+G SRVLQGQE+STLR    E  S E D  E SVVW  S DD+K+DVVS
Sbjct:   431 TTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVS 488

Query:   308 ASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQE 362
              SRRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D E
Sbjct:   489 GSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSE 548

Query:   363 GKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVE 422
             GKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV+Y    +YP+LNG   E
Sbjct:   549 GKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKYS---EYPVLNGLSTE 603

Query:   423 HSHGNWLMPPLPPSNFEN------SAHSRELMPKSAMVQDQEAGKSKD--CKLFGIPLFS 474
             ++ GNW + P   + +E        A +RE + K      +E  KS++  C+LFGIPL +
Sbjct:   604 NAGGNWPIRPRALNYYEEVVNAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTN 663

Query:   475 NHVMPEPVVSHRNTMNEPAGNLDQQFRAFEXXXXXXXXXXXXLADDNQVFNEHEKPSQPS 534
             N    +  +S RN +N+ AG    Q  + +              +D++   E  +P Q +
Sbjct:   664 NMNGTDSTMSQRNNLNDAAGLT--QIASPKVQDLSDQSKGSKSTNDHR---EQGRPFQTN 718

Query:   535 QTHTKDVRSKTQCGSTRSCTKV 556
               H KD ++KT   S+RSCTKV
Sbjct:   719 NPHPKDAQTKTN--SSRSCTKV 738
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;TAS
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0010047 "fruit dehiscence" evidence=IMP
GO:0010150 "leaf senescence" evidence=IMP
GO:0010227 "floral organ abscission" evidence=IMP
GO:0008285 "negative regulation of cell proliferation" evidence=IMP
GO:0048481 "ovule development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014731 ARF14 "auxin response factor 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036288 ARF22 "auxin response factor 22" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026145 ARF12 "auxin response factor 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JM3ARFB_ARATHNo assigned EC number0.64410.95530.6228yesno
Q5JK20ARFD_ORYSJNo assigned EC number0.50800.94640.6559yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018031001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (862 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 7e-44
pfam0236297 pfam02362, B3, B3 DNA binding domain 3e-19
smart0101996 smart01019, B3, B3 DNA binding domain 1e-15
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 1e-12
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  150 bits (380), Expect = 7e-44
 Identities = 48/83 (57%), Positives = 65/83 (78%)

Query: 107 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFT 166
           A HA STG+ F V+Y PR S SEF+VPY +Y++++ N +S+GMRFKMRFE E++ E+RF+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 167 GTIVGIEDADPQRWRDSKWRCLK 189
           GTI G+ D DP RW +SKWR L+
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 560
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
KOG06441113 consensus Uncharacterized conserved protein, conta 99.7
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.11
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=3.8e-36  Score=255.73  Aligned_cols=83  Identities=55%  Similarity=1.044  Sum_probs=81.5

Q ss_pred             HHHHHHcCCeEEEEEecCCCCCceeEehhhHHHHhcCCcccccEEEEEecCCCCCCceeeEEEEEeecCCCCCCCCCCce
Q 008608          107 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWR  186 (560)
Q Consensus       107 A~~aaatgs~F~V~Y~PRas~sEFVVp~~ky~eAl~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d~DP~rWP~S~WR  186 (560)
                      |+|||+++++|+|+||||++++|||||+++|++||+++|++||||||+||+||+++++|+|||+||+++||.|||+|+||
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR   80 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR   80 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeE
Q 008608          187 CLK  189 (560)
Q Consensus       187 ~L~  189 (560)
                      |||
T Consensus        81 ~Lq   83 (83)
T PF06507_consen   81 MLQ   83 (83)
T ss_pred             cCc
Confidence            996

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 6e-05
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 21  LAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR--GENGELRVG 78
           L  +D++G  WRFR+ +    + ++L  GWS FV  K L AGD   F R  G++ +L +G
Sbjct: 54  LNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 1e-26
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  104 bits (259), Expect = 1e-26
 Identities = 25/91 (27%), Positives = 41/91 (45%)

Query: 6   FHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAF 65
             P    +       L  +D++G  WRFR+ +    + ++L  GWS FV  K L AGD  
Sbjct: 39  HFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVV 98

Query: 66  IFLRGENGELRVGVRRAMRQQGNVPSSVISS 96
            F R    + ++ +    R   ++ +S  SS
Sbjct: 99  SFSRSNGQDQQLYIGWKSRSGSDLDASGPSS 129

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.84
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.15
1yel_A104 AT1G16640; CESG, protein structure initiative, str 98.81
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.84  E-value=1.5e-21  Score=175.32  Aligned_cols=85  Identities=27%  Similarity=0.454  Sum_probs=79.1

Q ss_pred             cccccCCCCCCCCCCCCceEEEeeCCCCeeEEeEEecCCCCceeeccccceeeecCCCCCCCEEEEEeCC--CCcEEEEE
Q 008608            2 LMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGE--NGELRVGV   79 (560)
Q Consensus         2 ~Ae~~FPpLD~s~~~Psq~L~~~D~~G~~W~Frhiyrg~prrhlLT~GWs~FV~~KkLvaGDsVvF~R~~--~geL~VGV   79 (560)
                      +||+|||++|.++..+.++|.++|.+|++|+|+|+||+++++|+|++||+.||++|+|++||.|+|++.+  ++.|+|+|
T Consensus        35 ~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~  114 (130)
T 1wid_A           35 HAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGW  114 (130)
T ss_dssp             HHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEE
T ss_pred             HHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEE
Confidence            6899999999988889999999999999999999999999999999999999999999999999999975  46799999


Q ss_pred             Eeecccc
Q 008608           80 RRAMRQQ   86 (560)
Q Consensus        80 RRa~r~~   86 (560)
                      ||+..+.
T Consensus       115 rr~~~~~  121 (130)
T 1wid_A          115 KSRSGSD  121 (130)
T ss_dssp             ECCCSCS
T ss_pred             EECCCCC
Confidence            9987654
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 560
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 1e-19
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 1e-09
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 6e-08
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.7 bits (204), Expect = 1e-19
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 8   PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
           P    +       L  +D++G  WRFR+ +    + ++L  GWS FV  K L AGD   F
Sbjct: 34  PLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSF 93

Query: 68  LR--GENGELRVGVRRA 82
            R  G++ +L +G +  
Sbjct: 94  SRSNGQDQQLYIGWKSR 110
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.75
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.36
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 98.81
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=4.5e-19  Score=153.03  Aligned_cols=82  Identities=28%  Similarity=0.474  Sum_probs=77.7

Q ss_pred             cccccCCCCCCCCCCCCceEEEeeCCCCeeEEeEEecCCCCceeeccccceeeecCCCCCCCEEEEEeC--CCCcEEEEE
Q 008608            2 LMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG--ENGELRVGV   79 (560)
Q Consensus         2 ~Ae~~FPpLD~s~~~Psq~L~~~D~~G~~W~Frhiyrg~prrhlLT~GWs~FV~~KkLvaGDsVvF~R~--~~geL~VGV   79 (560)
                      +|++|||+|+.+...+++.|.+.|.+|++|.|+|+||++.++|+|++||..||++++|++||.|+|+|.  ++++++|++
T Consensus        28 ~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~~~Lk~GD~~~F~~~~~~~~~~~i~~  107 (117)
T d1wida_          28 HAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGW  107 (117)
T ss_dssp             HHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEE
T ss_pred             HHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHHcCCCCCCEEEEEEEeCCCCEEEEEE
Confidence            689999999999999999999999999999999999988889999999999999999999999999996  578899999


Q ss_pred             Eeec
Q 008608           80 RRAM   83 (560)
Q Consensus        80 RRa~   83 (560)
                      ||+.
T Consensus       108 r~~~  111 (117)
T d1wida_         108 KSRS  111 (117)
T ss_dssp             ECCC
T ss_pred             EECC
Confidence            9875
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure