Citrus Sinensis ID: 008635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MNPMGSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDPSSESVASMNENIPRNFF
Secondary Structure (PSIPRED)
cccccccccEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccEEEEEcccHHHHHccccccccccccccEEEEEcccccccHHHHccccccHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHcccccEEEcHHcHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccccHHHHcHHHHHHccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccEEEEEEccHHHHHHcccccccHHHcccEEEEcHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHcccccEEEEEccHHHHHHccccEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHcHccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnpmgsgelkyiedssvpaveEGLVDFADRMTENadklmapvepkttlaieltpenptttfdsldmdnssisniKSSFDDFLAGvnesfsssmikgenavKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSidqtggsagskltnFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYgttkeslppeIRDALNLYEDRAvklwrpvgsALQQQVSVAIEGLerslgfdpndpivPFVVFLGTSATLWIFYWWWtyggysgdlspkstLELLRGKENAVLIDVRhedlrerdgipdlrrgarFRYASvylpevggSVKKLLRGGRELDDTLTAAVIRNLKivqdrskvivmdadgtrskGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILedinsspvqflgFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVAsyndaedfKQDVRLLLAPVRIGARAFSWAagkletnrpglptspssvDVQNRVLQAAAkhesqpadtegiqdpssesvasmneniprnff
Flexible Loop (DISEMBL)
mnpmgsgelkyiedssvpAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSikkstseavdnVVSRVFSsidqtggsagskLTNFSTDLKEASSKATVAAVDVLRNTIVALeesmtngaSFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAvlidvrhedlrerdgipdlrrgarfryasvylpevggsvkkllrggreldDTLTAAVIrnlkivqdrskvivmdadgtrskgiarslrKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLetnrpglptspssVDVQNRVLQAAakhesqpadtegiqdpssesvasmneniprnff
Low Complexity Region (SEG)
MNPMGSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVkssldtitssltsikkstsEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDPSSESVASMNENIPRNFF
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************ATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGK**********************************************************
Disordered Region (DISOPRED)
**********YIEDSSVPAVEEGLVDFAD*****************TL*IELTP************************************************SLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNF*****E***KATVAAVDVLRNTIVA**************************************VKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAIL**INSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAA************************************************************
Disordered Region (DISEMBL)
********LKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQ**********************VASMNENIPRNFF
Disordered Region (DISPRO)
*****SGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPE********************SSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLET*R*****************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPMGSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDPSSESVASMNENIPRNFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	558	2.2.26 [Sep-21-2011]
Q9FN48	387	Calcium sensing receptor,	no	no	0.313	0.452	0.296	4e-15

>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 14/189 (7%)

Query: 223 QQVSVAIEGLE--RSLGFDPNDPIVPFVVFLGTSATLWIFYWW--------WTYGGYSGD 272
           QQ S AIE  +   S   D      P V+ +   A    +           + + GY GD
Sbjct: 161 QQTSKAIEDAKPIASSTMDTISSADPSVIVVAAGAAFLAYLLLPPVFSAISFNFRGYKGD 220

Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
           L+P  TL+LL  K N +++D+R E  +E+ GIP L   A+ R  S+ L E+   VK ++R
Sbjct: 221 LTPAQTLDLLCTK-NYLMVDIRSEKDKEKAGIPRLPSNAKNRVISIPLEELPNKVKGIVR 279

Query: 333 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGF-- 390
             + ++  + A  I  LK +   S +I++D+    +K +A++L+ LG    ++V  GF  
Sbjct: 280 NSKRVEAEIAALKISYLKKINKGSNIIILDSYTDSAKIVAKTLKVLGYKNCYIVTDGFSG 339

Query: 391 -QSWVKEGL 398
            + W++  L
Sbjct: 340 GRGWLQSRL 348

Modulates cytoplasmic Ca(2+) concentration and is crucial for proper stomatal regulation in response to elevated levels of external Ca(2+). May function by regulating concentrations of inositol 1,4,5-trisphosphate (IP3), which in turn triggers release of Ca(2+) from internal stores. May play a role in de-etiolation.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
224121764	554	predicted protein [Populus trichocarpa]	0.978	0.985	0.684	0.0
359478275	649	PREDICTED: uncharacterized protein LOC10	0.973	0.836	0.647	0.0
356569155	650	PREDICTED: uncharacterized protein LOC10	0.987	0.847	0.605	0.0
356540095	643	PREDICTED: uncharacterized protein LOC10	0.987	0.856	0.606	0.0
357462747	620	hypothetical protein MTR_3g084020 [Medic	0.971	0.874	0.610	0.0
334186137	686	rhodanese/Cell cycle control phosphatase	0.935	0.760	0.606	0.0
449450369	619	PREDICTED: uncharacterized protein LOC10	0.953	0.859	0.602	1e-177
449494443	619	PREDICTED: uncharacterized LOC101220363	0.953	0.859	0.600	1e-177
297817278	690	predicted protein [Arabidopsis lyrata su	0.885	0.715	0.554	1e-168
7019672	663	putative protein [Arabidopsis thaliana]	0.905	0.761	0.484	1e-149

>gi|224121764|ref|XP_002330647.1| predicted protein [Populus trichocarpa] gi|222872251|gb|EEF09382.1| predicted protein [Populus trichocarpa]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/548 (68%), Positives = 452/548 (82%), Gaps = 2/548 (0%)

Query: 5   GSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSL 64
           G G+LK  E  ++  VEE L+D  D++TEN D ++  VEP+TT  I++TPE P+   +SL
Sbjct: 3   GGGKLKSFESYNIADVEEELMDSTDQLTENTDSVIGLVEPQTTSTIDITPEKPSLGSESL 62

Query: 65  DMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDN 124
           +MD+ S+S+ K+S DD L G  +S ++S+ +GENAV+SSL+TIT+S+TSIKKS SE  D+
Sbjct: 63  EMDSDSLSSAKTSLDDLLGGFKDSINTSVNQGENAVQSSLNTITTSITSIKKSASETADS 122

Query: 125 VVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFV 184
            +S+VFS+ +QTG  AG +LT+FSTDL+EA  K T A+V+VLR  IVA+EES+  GASFV
Sbjct: 123 ALSKVFSTFNQTGELAGDRLTSFSTDLREAIKKTTGASVEVLRGAIVAVEESIVKGASFV 182

Query: 185 VYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPI 244
           VY YG+ KE LPPEIR ALNL E+RA K+ RP+G+  QQ V +AIEGLE+SLG DPNDP+
Sbjct: 183 VYSYGSAKELLPPEIRGALNLSEERATKILRPIGATFQQ-VYIAIEGLEKSLGLDPNDPV 241

Query: 245 VPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGI 304
           VPFV+FLGTSATLW FYW W YGGYSGDLSP+ TL+LL  K + +LIDVR E LRERDGI
Sbjct: 242 VPFVLFLGTSATLWGFYWVWAYGGYSGDLSPQLTLKLLAEKGDTILIDVRPEVLRERDGI 301

Query: 305 PDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 364
           PDLRR ARFRYASV LP+V GSV+KLL+GG++LDDTL AAVIRNLK VQDR +VIVMDA+
Sbjct: 302 PDLRRAARFRYASVTLPQVDGSVRKLLKGGKDLDDTLIAAVIRNLKAVQDRYQVIVMDAN 361

Query: 365 GTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDIN 424
           G+RSKGIARSLRKLGV   ++VQGGFQSWVK+GLR+KELK ETALTILNE+AEAILE+I 
Sbjct: 362 GSRSKGIARSLRKLGVKRPYVVQGGFQSWVKQGLRVKELKPETALTILNEEAEAILEEIR 421

Query: 425 SSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLL 484
            SPVQ LG GVG  A  Y LLEWEKTLQFIA++GLGQTIYRRVASYN  EDFKQD+RLLL
Sbjct: 422 PSPVQALGCGVGFAAASYALLEWEKTLQFIAIVGLGQTIYRRVASYNGPEDFKQDMRLLL 481

Query: 485 APVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDPSSE 544
           +PVR+GA+AFSWA GKLE NR GLPTSPSS DVQNRVLQAAAKHESQP++T G+Q+PS  
Sbjct: 482 SPVRVGAQAFSWATGKLENNRLGLPTSPSSTDVQNRVLQAAAKHESQPSET-GVQNPSPN 540

Query: 545 SVASMNEN 552
           SVA +NEN
Sbjct: 541 SVAPLNEN 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478275|ref|XP_002274820.2| PREDICTED: uncharacterized protein LOC100249037 [Vitis vinifera] gi|296084312|emb|CBI24700.3| unnamed protein product [Vitis vinifera]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/544 (64%), Positives = 436/544 (80%), Gaps = 1/544 (0%)

Query: 10  KYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNS 69
           K+++ S +   EE LVD+ D++TENA+ L      +T    ++ P NP +  DS  MDN 
Sbjct: 102 KFVDSSGLSGTEEKLVDYMDQLTENANILSGAPNLETISTTDIIPNNPNSVSDSFGMDNG 161

Query: 70  SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRV 129
           S+S++K++  D  +G+NES  SS+ KG++AVK+SLDTITSS+TS   S ++AVD  VS+V
Sbjct: 162 SLSSLKTNAGDLFSGINESIGSSVDKGQSAVKTSLDTITSSITSAINSATDAVDTAVSKV 221

Query: 130 FSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYG 189
           FSS+DQ G  A  ++ +FS DLKEA+SK    A+DVLR+ IV +E+S+ NGASF  Y YG
Sbjct: 222 FSSVDQAGELANDRVVSFSNDLKEATSKVGATAIDVLRHGIVLVEDSLANGASFAAYSYG 281

Query: 190 TTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV 249
           + KE LP EIR+ +NL E++ +++ RP G+ALQQ   VA+EGLER+LG DP+DPIVPFV+
Sbjct: 282 SAKELLPTEIRNVVNLSEEKVLEILRPAGAALQQ-FYVAVEGLERNLGLDPSDPIVPFVL 340

Query: 250 FLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRR 309
           FLGTSATLW+FYW  TYGGYSGD+SP+ TLELL+GKEN VL+DVR EDLRERDGIPDLRR
Sbjct: 341 FLGTSATLWVFYWRLTYGGYSGDISPQLTLELLKGKENVVLVDVRPEDLRERDGIPDLRR 400

Query: 310 GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSK 369
            ARFRYASV LPE   SV+KLL+ GR+LDD+L AAVIRNLKIVQDRSKVIV+DADG+RSK
Sbjct: 401 AARFRYASVTLPEFNSSVRKLLKSGRDLDDSLIAAVIRNLKIVQDRSKVIVLDADGSRSK 460

Query: 370 GIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQ 429
           GIARSLRKLGV   +LVQGGFQSWVK+G R+KELK ET LTILNE+AEAI+EDIN +PV+
Sbjct: 461 GIARSLRKLGVKRPYLVQGGFQSWVKQGFRVKELKPETTLTILNEEAEAIIEDINPTPVK 520

Query: 430 FLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRI 489
            LG+GVG  A +Y  +EWEKTLQFI + GLGQTIYRRVA+Y   EDFKQDVRLLL PVR+
Sbjct: 521 LLGYGVGLIAAVYASIEWEKTLQFIGIFGLGQTIYRRVAAYEGPEDFKQDVRLLLTPVRL 580

Query: 490 GARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDPSSESVASM 549
           GA+A+SWAAGKLE+N  GLPTSPSS+DVQNRVLQAAAKHESQP+DTE  QDP  +S  ++
Sbjct: 581 GAQAYSWAAGKLESNGIGLPTSPSSLDVQNRVLQAAAKHESQPSDTEETQDPFPDSAGAV 640

Query: 550 NENI 553
            E++
Sbjct: 641 TESV 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569155|ref|XP_003552771.1| PREDICTED: uncharacterized protein LOC100786123 [Glycine max]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/552 (60%), Positives = 431/552 (78%), Gaps = 1/552 (0%)

Query: 2   NPMGSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTF 61
           + +  GE++++E   +  V +   DFA+++TE ++ L+ P +P+T    ++ PEN   + 
Sbjct: 100 HSLSDGEVRHMEYYHLSTVPDEFADFAEQVTEGSNTLVTPAQPETLSTADIMPENFAPSP 159

Query: 62  DSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEA 121
            S+++DN S+ + K+S  D +AG+NESFS+S+ KGENA++SSLDT TS + SI K+ +++
Sbjct: 160 SSINVDNESLVSTKASVGDLVAGINESFSASINKGENALRSSLDTATSFVDSIVKTATKS 219

Query: 122 VDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGA 181
           VDN  S+ FSS+DQTG     KLT+FS++L   ++KA   A+DVLR TI+ +E S+T+GA
Sbjct: 220 VDNAFSKAFSSVDQTGELTNKKLTSFSSELTGVTNKAPAVAIDVLRRTIIVVESSLTSGA 279

Query: 182 SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPN 241
           S+VVY YG+ KE LP  IRD +N+YED+A ++ RPVGSA  Q++ +A+  LE+SLG DPN
Sbjct: 280 SYVVYLYGSAKELLPAGIRDTVNVYEDKATEILRPVGSA-TQRLYMAVYSLEKSLGLDPN 338

Query: 242 DPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRER 301
           DPI+PFVV LG+SATLW FYW WTYGGYSGDLSPKS  ELL    NA LIDVR E++RE+
Sbjct: 339 DPIIPFVVLLGSSATLWAFYWLWTYGGYSGDLSPKSAFELLAEDANAALIDVRSEEMREK 398

Query: 302 DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 361
            GIPDLRR ARFRYAS+   EV GS++KLL+ GRELDD+L AA+IRNLK+V+D S+VIV+
Sbjct: 399 YGIPDLRRAARFRYASITPLEVDGSIRKLLKSGRELDDSLIAAIIRNLKMVKDSSRVIVL 458

Query: 362 DADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILE 421
           DADGTRSKGIARSLRK+G+   +LVQGGFQSW+++GLRIKELK ETAL+ILNE+AEAILE
Sbjct: 459 DADGTRSKGIARSLRKIGLKNPYLVQGGFQSWMQQGLRIKELKPETALSILNEEAEAILE 518

Query: 422 DINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVR 481
           D++ SP Q LG+G    A LY LLEWEKTLQ I   GLG TIY RV+SY  +ED KQDVR
Sbjct: 519 DVSPSPGQLLGYGTVLIAGLYALLEWEKTLQLIGAFGLGLTIYLRVSSYEKSEDLKQDVR 578

Query: 482 LLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDP 541
           LLL+PVR+GA+AFSWAAGKLE+N  GLPTSPSS DVQNRVLQAAAKHESQP+D+EG QDP
Sbjct: 579 LLLSPVRLGAQAFSWAAGKLESNGLGLPTSPSSSDVQNRVLQAAAKHESQPSDSEGNQDP 638

Query: 542 SSESVASMNENI 553
             E    +N+N+
Sbjct: 639 VPEPTVPLNQNV 650

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540095|ref|XP_003538526.1| PREDICTED: uncharacterized protein LOC100786142 [Glycine max]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/552 (60%), Positives = 435/552 (78%), Gaps = 1/552 (0%)

Query: 2   NPMGSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTF 61
           + + +GE++++E   +  V + L DFA++ TE ++ L+ P +P+T  A ++ PEN T++ 
Sbjct: 93  HSLSNGEVRHMESYHLSTVPDELADFAEQATEGSNTLVTPAQPETLSAADIMPENFTSSP 152

Query: 62  DSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEA 121
            S+++DN S+++ K+S  D +AG NESF++S+ +G+NA++SSLDT TS + SI K+ +E+
Sbjct: 153 SSINVDNESLASTKASVGDLVAGFNESFNASINEGQNALRSSLDTATSFVDSIVKTATES 212

Query: 122 VDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGA 181
           VDN  S+ FSS+DQTG  A  KLT+FS++L   ++KA   A+DVLR TIV +E S+T+GA
Sbjct: 213 VDNTFSKAFSSVDQTGELANKKLTSFSSELTGVTNKAPAVAIDVLRRTIVVVESSLTSGA 272

Query: 182 SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPN 241
           S+VVY YG+ KE LP  IRD +N+YED+A ++ RPVGSA  Q++ +A+  LE+SLG DPN
Sbjct: 273 SYVVYLYGSAKELLPAGIRDTVNVYEDKATEILRPVGSA-TQRIYMAVYSLEKSLGLDPN 331

Query: 242 DPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRER 301
           DPI+PFVV +G+SATLW FYW WTYGGYSG+LSPKS  ELL    NA LIDVR E++RE+
Sbjct: 332 DPIIPFVVLVGSSATLWAFYWLWTYGGYSGNLSPKSAFELLAEDANAALIDVRSEEMREK 391

Query: 302 DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 361
           DGIPDLRR ARFRYAS+   EV GS++KLL+ GRELDD+L AA+IRNLKIV+D S+VIV+
Sbjct: 392 DGIPDLRRAARFRYASIIPLEVDGSIRKLLKSGRELDDSLIAAIIRNLKIVKDSSRVIVL 451

Query: 362 DADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILE 421
           DADGT SKGIARSLRK+GV   +LV+GGF SW+K+GLRIKELK ETAL+ILNE+AEAILE
Sbjct: 452 DADGTCSKGIARSLRKIGVKNPYLVEGGFYSWMKQGLRIKELKPETALSILNEEAEAILE 511

Query: 422 DINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVR 481
           D++ SP Q LG+G    A LY LLE EKTLQ I   GLG TIY RV+SY ++ED KQDVR
Sbjct: 512 DVSPSPWQLLGYGTVLIAGLYALLELEKTLQLIGAFGLGLTIYLRVSSYENSEDLKQDVR 571

Query: 482 LLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDP 541
           LLL+PVR+GA+AFSWAAGKLE+N  GLPTSPSS DVQNRVLQAAAKHESQP+D+EG QDP
Sbjct: 572 LLLSPVRLGAQAFSWAAGKLESNGLGLPTSPSSSDVQNRVLQAAAKHESQPSDSEGNQDP 631

Query: 542 SSESVASMNENI 553
             E    +N+N+
Sbjct: 632 VPEPTVPLNQNV 643

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462747|ref|XP_003601655.1| hypothetical protein MTR_3g084020 [Medicago truncatula] gi|355490703|gb|AES71906.1| hypothetical protein MTR_3g084020 [Medicago truncatula]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/550 (61%), Positives = 420/550 (76%), Gaps = 8/550 (1%)

Query: 4   MGSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAP-VEPKTTLA-IELTPENPTTTF 61
           + +GE +Y    S+  V E LVDFA + TE ++ L+AP V P+  L+  ++T     +  
Sbjct: 76  LSTGEFRY----SLSTVPEELVDFAKQSTEVSEPLVAPTVHPEAILSSTDITSGKIESVP 131

Query: 62  DSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEA 121
             +   N S++  K+S  +  AG+NE+FS S+ KGENA++SS+DT TS + S+ K+ + +
Sbjct: 132 SLIKGGNESLAATKASATEVFAGINETFSDSINKGENALRSSVDTATSFIDSVVKNATTS 191

Query: 122 VDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGA 181
            DN  S+VFS+ DQTG  A  K+T+FS+++   +SKA    +DVLR T+VA+E S+++GA
Sbjct: 192 ADNAFSKVFSAADQTGDLANKKITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGA 251

Query: 182 SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPN 241
           S+VVY YG+ KE +P EIRD +N+YED+A ++ RPVGSA  QQ+ +A   LE+SLG DPN
Sbjct: 252 SYVVYLYGSAKEFIPAEIRDTVNIYEDKAAQVLRPVGSA-TQQIYMAFYSLEKSLGLDPN 310

Query: 242 DPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRER 301
           DPI+PFVVF+G+SATLW  YW W YGGYSGDLSPKS  ELL G  NAVLIDVR EDLRE+
Sbjct: 311 DPIIPFVVFVGSSATLWTIYWLWKYGGYSGDLSPKSAFELLAGDSNAVLIDVRSEDLREK 370

Query: 302 DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 361
           DGIPD+RR ARFRYASV   EV GS++KLL+GGR+LDD+L AA+I+NLKIV+D SKVIV+
Sbjct: 371 DGIPDIRRAARFRYASVTPIEVDGSIRKLLKGGRDLDDSLIAAIIQNLKIVKDSSKVIVL 430

Query: 362 DADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILE 421
           DADGTRSKGIARSL+K+GV   +LVQGGFQSWVK+ LRIKELK ETALTILNE+AEAILE
Sbjct: 431 DADGTRSKGIARSLKKIGVKNPYLVQGGFQSWVKQSLRIKELKPETALTILNEEAEAILE 490

Query: 422 DINSSPVQFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVR 481
           DI  SP Q LG G    A  Y L+EWEKTLQ I V GL  TIY RV+SY  +ED  QDVR
Sbjct: 491 DIRPSPWQLLGSGTALLAGSYALVEWEKTLQLIGVFGLSLTIYLRVSSYEKSEDLNQDVR 550

Query: 482 -LLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQD 540
            LLLAPV+IG +AFSWAAGKLE+N  GLPTSPSS+DVQNRVLQAAAKHESQP+D+EG QD
Sbjct: 551 FLLLAPVKIGGQAFSWAAGKLESNGIGLPTSPSSLDVQNRVLQAAAKHESQPSDSEGSQD 610

Query: 541 PSSESVASMN 550
           P+ ES  S+N
Sbjct: 611 PTPESTVSLN 620

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186137|ref|NP_191537.4| rhodanese/Cell cycle control phosphatase-like protein [Arabidopsis thaliana] gi|332646447|gb|AEE79968.1| rhodanese/Cell cycle control phosphatase-like protein [Arabidopsis thaliana]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/536 (60%), Positives = 419/536 (78%), Gaps = 14/536 (2%)

Query: 28  ADRMTENADKLMAPVEPKTTLAIELTPENPTT------TFDSLDMD-----NSSISNIKS 76
           A+ +T+    L+  VE  T   ++++P++  +      +FD          +SS+ + K+
Sbjct: 145 AETLTDKTSSLIDSVESGTNATVKISPDSSVSLPDAKASFDDFSSGLKQSFSSSLPDAKA 204

Query: 77  SFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT 136
           S DDF +GV ESFSSS+ +GENAVK++L++ +SS+TSI K+ SE VD+ V+R FS++DQT
Sbjct: 205 SVDDFSSGVKESFSSSLNQGENAVKNTLESFSSSVTSITKNASEVVDSAVNRAFSTLDQT 264

Query: 137 GGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLP 196
           G  AG K ++FST LKEAS++A V A+D+LR ++   E S+TNG SFVVY YG+ KE LP
Sbjct: 265 GDVAGDKFSSFSTGLKEASNRAAVIAIDLLRQSVSLGERSVTNGVSFVVYSYGSAKELLP 324

Query: 197 PEIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT 256
           P+++ ALN  ED A+K+  PVG+ LQQ VSVAI GLER++G DP+DPI+   +F+GT+ T
Sbjct: 325 PDVKSALNSSEDVALKVLSPVGAVLQQ-VSVAIGGLERNIGLDPDDPILHLFLFVGTTGT 383

Query: 257 LWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYA 316
            W+ Y  WTYGGY+GDLSPKSTL+LL+ ++ +VLIDVR E LRE+DGIPDLRR ARFRY+
Sbjct: 384 FWVLYRVWTYGGYAGDLSPKSTLDLLKSRDKSVLIDVRPEALREKDGIPDLRRSARFRYS 443

Query: 317 SVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLR 376
           SV LPEV G VK+LL+GG E+DD LTA +I+NLKIVQDRSKV+VMDADGTRSKGIAR+LR
Sbjct: 444 SVTLPEVDGDVKRLLKGGSEVDDILTAVIIKNLKIVQDRSKVVVMDADGTRSKGIARALR 503

Query: 377 KLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVG 436
           K+G+   +L+QGG++SWV+EGLR+KE K ET LTILNE+AEAI EDIN SP+Q  G GVG
Sbjct: 504 KVGIKRPYLMQGGYRSWVQEGLRVKEPKPETTLTILNEEAEAIFEDINPSPLQLFGVGVG 563

Query: 437 CFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSW 496
            FA LY L EWEKTLQ IAVIGL  TIY R++SY+D+EDFKQDVRLLLAPV++GA+AFSW
Sbjct: 564 FFAALYALSEWEKTLQLIAVIGLSLTIYLRLSSYDDSEDFKQDVRLLLAPVKLGAQAFSW 623

Query: 497 AAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQPAD--TEGIQDPSSESVASMN 550
           AAGKLETN  GLPTSPSS DV++RVLQAAAKHES+P+D  +E +QD SS    ++N
Sbjct: 624 AAGKLETNGVGLPTSPSSSDVRSRVLQAAAKHESKPSDETSESLQDASSSPEEALN 679

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450369|ref|XP_004142935.1| PREDICTED: uncharacterized protein LOC101220363 [Cucumis sativus]

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 321/533 (60%), Positives = 413/533 (77%), Gaps = 1/533 (0%)

Query: 21  EEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDD 80
           E  L+D +   +E     + P++ +T L  ++  E      DSL++DNSS+SN+K+S +D
Sbjct: 83  EGTLLDVSGLRSEITSAQVLPIQHETGLGDKIASEKMLFLSDSLNVDNSSVSNLKASTED 142

Query: 81  FLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSA 140
           FL  V+ESF++S+ +GEN ++ SLDTI S ++S+ K  +++VD+ VS +FSS+DQ G   
Sbjct: 143 FLDRVSESFNASIQQGENTIEKSLDTINSFVSSLIKRGNQSVDDAVSSIFSSVDQIGEQG 202

Query: 141 GSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIR 200
            +K+TNFS+ LKE S KA++AA+D+LR+ +VA+E+S+ N  SFVVY YG+ KE  PPEIR
Sbjct: 203 SNKVTNFSSGLKEGSIKASIAAIDLLRHAVVAIEDSLINATSFVVYSYGSAKELFPPEIR 262

Query: 201 DALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIF 260
            AL+  E +  ++  PV +  QQ +   +E LE+ +G DP+DP+VPF + +G+S TLWIF
Sbjct: 263 IALSSSEQKVAEILSPVKTGFQQ-IYPTVESLEKIVGLDPSDPLVPFFLLVGSSVTLWIF 321

Query: 261 YWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 320
           YW  TYGGYSGDLSP++TLELL+G +NAVLIDVR EDLRE+DGIPDLRRGAR RY SV L
Sbjct: 322 YWTNTYGGYSGDLSPEATLELLKGSDNAVLIDVRPEDLREKDGIPDLRRGARARYTSVTL 381

Query: 321 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGV 380
           PEV GS++KL+  GR+LDDTL A+VIRNLKIVQDRSKVIVMDA+GT SK +ARSLRKLGV
Sbjct: 382 PEVDGSIRKLVTNGRDLDDTLLASVIRNLKIVQDRSKVIVMDANGTGSKNVARSLRKLGV 441

Query: 381 MVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAV 440
              +L+QGG+QSWVK+GLRIKELK ET L+ILNE+AEAILE+IN SPVQ L +G+G  A 
Sbjct: 442 KKPYLIQGGYQSWVKQGLRIKELKPETPLSILNEEAEAILEEINPSPVQVLSYGLGLAAT 501

Query: 441 LYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGK 500
           LY LLEWE +LQ IA++G+GQTIYRRV SY DAED  +DVRLLL PV +GA+A SWAA K
Sbjct: 502 LYALLEWETSLQIIAILGIGQTIYRRVTSYEDAEDLNKDVRLLLTPVSLGAQALSWAAEK 561

Query: 501 LETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDPSSESVASMNENI 553
           LETN  GLPTSPSS+DVQNRVLQAAAKHESQP+  EGIQ+   E+   ++E I
Sbjct: 562 LETNGNGLPTSPSSLDVQNRVLQAAAKHESQPSVDEGIQNRPPEAAIPVSEGI 614

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494443|ref|XP_004159547.1| PREDICTED: uncharacterized LOC101220363 [Cucumis sativus]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/533 (60%), Positives = 413/533 (77%), Gaps = 1/533 (0%)

Query: 21  EEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDD 80
           E  L+D +   +E     + P++ +T L  ++  E      DSL++DNSS+SN+K+S +D
Sbjct: 83  EGTLLDVSGLRSEITSAQVLPIQHETGLGDKIASEKMLFLSDSLNVDNSSVSNLKASTED 142

Query: 81  FLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSA 140
           FL  V+ESF++S+ +GEN ++ SLDTI S ++S+ K  +++VD+ VS +FSS+DQ G   
Sbjct: 143 FLDRVSESFNASIQQGENTIEKSLDTINSFVSSLIKRGNQSVDDAVSSIFSSVDQIGEQG 202

Query: 141 GSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIR 200
            +K+TNFS+ LKE S KA++AA+D+LR+ +VA+E+S+ N  SFVVY YG+ KE  PPEIR
Sbjct: 203 SNKVTNFSSGLKEGSIKASIAAIDLLRHAVVAIEDSLINATSFVVYSYGSAKELFPPEIR 262

Query: 201 DALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIF 260
            AL+  E +  ++  PV +  QQ +   +E LE+ +G DP+DP+VPF + +G+S TLWIF
Sbjct: 263 IALSSSEQKVAEILSPVKTGFQQ-IYPTVESLEKIVGLDPSDPLVPFFLLVGSSVTLWIF 321

Query: 261 YWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 320
           YW  TYGGYSGDLSP++TLELL+G +NAVLIDVR EDLRE+DGIPDLRRGAR RY SV L
Sbjct: 322 YWTNTYGGYSGDLSPEATLELLKGSDNAVLIDVRPEDLREKDGIPDLRRGARARYTSVTL 381

Query: 321 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGV 380
           PEV GS++KL+  GR+LDDTL A+VIRNLKIVQDRSKVIVMDA+GT SK +ARSLRKLGV
Sbjct: 382 PEVDGSIRKLVTNGRDLDDTLLASVIRNLKIVQDRSKVIVMDANGTGSKNVARSLRKLGV 441

Query: 381 MVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAV 440
              +L+QGG+QSWVK+GLRIKELK ET L+ILNE+AEAILE+IN SPVQ L +G+G  A 
Sbjct: 442 KKPYLIQGGYQSWVKQGLRIKELKPETPLSILNEEAEAILEEINPSPVQVLSYGLGLAAT 501

Query: 441 LYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGK 500
           LY LLEWE +LQ IA++G+GQTIYRRV SY DAED  +DVRLLL PV +GA+A SWAA K
Sbjct: 502 LYALLEWETSLQIIAILGIGQTIYRRVTSYEDAEDLNKDVRLLLTPVSLGAQALSWAAEK 561

Query: 501 LETNRPGLPTSPSSVDVQNRVLQAAAKHESQPADTEGIQDPSSESVASMNENI 553
           LETN  GLPTSPSS+DVQNRVLQAAAKHESQP+  +GIQ+   E+   ++E I
Sbjct: 562 LETNGNGLPTSPSSLDVQNRVLQAAAKHESQPSVDDGIQNRPPEAAIPVSEGI 614

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817278|ref|XP_002876522.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322360|gb|EFH52781.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 311/561 (55%), Positives = 396/561 (70%), Gaps = 67/561 (11%)

Query: 28  ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNE 87
           A+ +TE +  L+  VE  T L++E++ +   +  D+LD++  S+ + K+SFDDF +G+ E
Sbjct: 152 AETLTEKSSSLIDSVESGTKLSLEISQDTSVSLPDTLDLNPGSLLDAKASFDDFSSGLKE 211

Query: 88  SFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNF 147
           SFSSS+ +GENAVK+SLD+ +SS+TSI K+ SE VD+  +R FS++DQTG  AG K ++F
Sbjct: 212 SFSSSLNQGENAVKNSLDSFSSSVTSITKNASEVVDDAFNRAFSAVDQTGDIAGDKFSSF 271

Query: 148 STDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYE 207
           ST LKEAS +A V A+D+LR ++   E S+TNG SFVVY YG+ K+  PP+++ ALN  E
Sbjct: 272 STGLKEASHRAAVIAIDLLRQSVSIAESSVTNGVSFVVYSYGSAKDLFPPDVKSALNSSE 331

Query: 208 DRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYG 267
           D A+K+  PVG+ L QQVSVAI GLER+ G DP+DPI+   +F+GT+ T W+ Y  WTYG
Sbjct: 332 DVALKVLSPVGAVL-QQVSVAIGGLERNFGLDPDDPIIHLFLFVGTTGTFWVLYRVWTYG 390

Query: 268 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV 327
           GY+GDLSPKSTL+LLR +E +VLIDVR E LRE+DGIPDLRR ARFRY+SV LPEV G+V
Sbjct: 391 GYAGDLSPKSTLDLLRSREKSVLIDVRPEALREKDGIPDLRRSARFRYSSVTLPEVDGAV 450

Query: 328 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQ 387
           K+LL+GG E+DD LTA +I+NLKIVQ                              +LVQ
Sbjct: 451 KRLLKGGSEVDDILTAVIIKNLKIVQR----------------------------PYLVQ 482

Query: 388 GGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYV---- 443
           GGF+SWVKEGLR+KE K ET LTILNE+AEAILEDIN SP+Q +G GVG FA LY     
Sbjct: 483 GGFRSWVKEGLRVKEPKPETTLTILNEEAEAILEDINPSPLQLVGVGVGFFAALYALSGA 542

Query: 444 --------------------------------LLEWEKTLQFIAVIGLGQTIYRRVASYN 471
                                           L EWEKTLQ IAVIGLG TIY+R++SY+
Sbjct: 543 FNSFSFPLLNSHTRHNTQVPHFHLYTYMIALSLAEWEKTLQLIAVIGLGLTIYQRLSSYD 602

Query: 472 DAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKHESQ 531
           D+EDFKQDVRLLLAPVR+GA+AFSWAAGKLETN  GLPTSPSS DV++RVLQAAAKHES+
Sbjct: 603 DSEDFKQDVRLLLAPVRLGAQAFSWAAGKLETNGVGLPTSPSSSDVRSRVLQAAAKHESK 662

Query: 532 PAD--TEGIQDPSSESVASMN 550
           P+D  +E +QD SS    ++N
Sbjct: 663 PSDETSESLQDASSSPEEALN 683

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7019672|emb|CAB75797.1| putative protein [Arabidopsis thaliana]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 303/626 (48%), Positives = 392/626 (62%), Gaps = 121/626 (19%)

Query: 28  ADRMTENADKLMAPVEPKTTLAIELTPENPTT------TFDSLDMD-----NSSISNIKS 76
           A+ +T+    L+  VE  T   ++++P++  +      +FD          +SS+ + K+
Sbjct: 49  AETLTDKTSSLIDSVESGTNATVKISPDSSVSLPDAKASFDDFSSGLKQSFSSSLPDAKA 108

Query: 77  SFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT 136
           S DDF +GV ESFSSS+ +GENAVK++L++ +SS+TSI K+ SE VD+ V+R FS++DQT
Sbjct: 109 SVDDFSSGVKESFSSSLNQGENAVKNTLESFSSSVTSITKNASEVVDSAVNRAFSTLDQT 168

Query: 137 GGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLP 196
           G  AG K ++FST LKEAS++A V A+D+LR ++   E S+TNG SFVVY YG+ KE LP
Sbjct: 169 GDVAGDKFSSFSTGLKEASNRAAVIAIDLLRQSVSLGERSVTNGVSFVVYSYGSAKELLP 228

Query: 197 PEIRDALNLYEDRAVKLWRPVGSALQQ----QVSVAIEGLERSLGFDPNDPIVPFVVFLG 252
           P+++ ALN  ED A+K+  PVG+ LQQ    QVSVAI GLER++G DP+DPI+   +F+G
Sbjct: 229 PDVKSALNSSEDVALKVLSPVGAVLQQYHDEQVSVAIGGLERNIGLDPDDPILHLFLFVG 288

Query: 253 TSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGAR 312
           T+ T W+ Y  WTYGGY+GDLSPKSTL+LL+ ++ +VLIDVR E LRE+DGIPDLRR AR
Sbjct: 289 TTGTFWVLYRVWTYGGYAGDLSPKSTLDLLKSRDKSVLIDVRPEALREKDGIPDLRRSAR 348

Query: 313 FRYASVYLPEVG----------------------------------GSVKKLLRGGRELD 338
           FRY+SV LPEVG                                  G VK+LL+GG E+D
Sbjct: 349 FRYSSVTLPEVGFSILIVVDHSEYRNSTHVIYEHNEVSAISATEVDGDVKRLLKGGSEVD 408

Query: 339 DTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL 398
           D LTA +I+NLKIVQDRSKV+VMDADGTRSK                  GG++SWV+EGL
Sbjct: 409 DILTAVIIKNLKIVQDRSKVVVMDADGTRSK------------------GGYRSWVQEGL 450

Query: 399 RIKELKSETALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLL------------- 445
           R+KE K ET LTILNE+AEAI EDIN SP+Q  G     F+  + LL             
Sbjct: 451 RVKEPKPETTLTILNEEAEAIFEDINPSPLQLFGVEYLIFSTTHKLLTSTFCTNMIALSL 510

Query: 446 -EWEKTLQFIAVIGLG--QTIYRRVA----------SYNDAEDFK--------------- 477
            EWEKTLQ IAVIGL   QT+ R             + N     K               
Sbjct: 511 AEWEKTLQLIAVIGLSLFQTLCRLYTYDFLHMMTPKTSNKTSGIKAPSLDPFSIAKTQRN 570

Query: 478 -----------QDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAA 526
                         RLLLAPV++GA+AFSWAAGKLETN  GLPTSPSS DV++RVLQAAA
Sbjct: 571 LCSVLTKIVSSSSSRLLLAPVKLGAQAFSWAAGKLETNGVGLPTSPSSSDVRSRVLQAAA 630

Query: 527 KHESQPAD--TEGIQDPSSESVASMN 550
           KHES+P+D  +E +QD SS    ++N
Sbjct: 631 KHESKPSDETSESLQDASSSPEEALN 656

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
TAIR|locus:2178287	387	CaS "calcium sensing receptor"	0.240	0.346	0.326	9.8e-13

TAIR|locus:2178287 CaS "calcium sensing receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
 Identities = 45/138 (32%), Positives = 79/138 (57%)

Query:   264 WTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV 323
             + + GY GDL+P  TL+LL  K N +++D+R E  +E+ GIP L   A+ R  S+ L E+
Sbjct:   212 FNFRGYKGDLTPAQTLDLLCTK-NYLMVDIRSEKDKEKAGIPRLPSNAKNRVISIPLEEL 270

Query:   324 GGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVT 383
                VK ++R  + ++  + A  I  LK +   S +I++D+    +K +A++L+ LG    
Sbjct:   271 PNKVKGIVRNSKRVEAEIAALKISYLKKINKGSNIIILDSYTDSAKIVAKTLKVLGYKNC 330

Query:   384 FLVQGGF---QSWVKEGL 398
             ++V  GF   + W++  L
Sbjct:   331 YIVTDGFSGGRGWLQSRL 348

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0071277 "cellular response to calcium ion" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009704 "de-etiolation" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1420041 hypothetical protein (555 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	558
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	1e-09
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	2e-08
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	3e-04
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	3e-04

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 284 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 343
             E  VL+DVR  +  E   IP           +V +P     + +LL    ELD     
Sbjct: 1   NDEKVVLLDVRSPEEYEGGHIPG----------AVNIP-----LSELLDRRGELDILEFE 45

Query: 344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL 398
            +++ L + +D+  V+V    G RS   A  LR+LG    +L+ GG++ W   G 
Sbjct: 46  ELLKRLGLDKDK-PVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGP 99

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 27/120 (22%)

Query: 279 LELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELD 338
             LL   E+AVL+DVR  +  ER  IP                  G ++   L   +  +
Sbjct: 12  AALLLAGEDAVLLDVREPEEYERGHIP------------------GAAINIPLSELKAAE 53

Query: 339 DTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL 398
                    NL  + D   ++V  A G RS   A +L+  G    + + GG  +W   GL
Sbjct: 54  ---------NLLELPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGL 104

Length = 110

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 28/117 (23%)

Query: 278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGREL 337
            L+ L   E+AVL+DVR  +      IP    GA     ++ L E+      L     EL
Sbjct: 1   ELKELLDDEDAVLLDVREPEEYAAGHIP----GAI----NIPLSELEERAALL-----EL 47

Query: 338 DDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394
           D              +D+  ++V    G RS   A+ LRK G    + ++GG  +W 
Sbjct: 48  D--------------KDK-PIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 32/130 (24%)

Query: 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 331
           ++SP            AVLIDVR    R          GA                  + 
Sbjct: 4   EISPAEARARAAQG--AVLIDVREAHERASGQAE----GALR----------------IP 41

Query: 332 RGGRELDDTLTAAVIRNLKIVQDRSKVIV-MDADGTRSKGIARSLRKLGVMVTFLVQGGF 390
           RG  EL         R    + DR + IV + A GTRS   A +LR+LG      V GGF
Sbjct: 42  RGFLEL---------RIETHLPDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92

Query: 391 QSWVKEGLRI 400
            +W   GL +
Sbjct: 93  SAWKDAGLPL 102

Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	558
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.83
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.81
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.79
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.79
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.79
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.78
PLN02160	136	thiosulfate sulfurtransferase	99.78
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.76
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.75
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.75
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.75
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.73
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.73
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.72
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.72
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.72
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.72
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.72
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.71
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.71
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.71
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.71
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.71
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.7
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.69
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.69
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.68
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.68
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.68
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.68
PRK01415	247	hypothetical protein; Validated	99.63
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.63
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.63
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.62
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.62
PRK05320	257	rhodanese superfamily protein; Provisional	99.62
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.61
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.6
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.59
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.58
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.58
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.57
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.56
PRK07411	390	hypothetical protein; Validated	99.54
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.54
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.52
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.5
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.48
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.47
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.46
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.46
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.46
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.45
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.45
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.11
COG1054	308	Predicted sulfurtransferase [General function pred	98.94
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.79
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	98.54
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.07
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.93
PRK07846	451	mycothione reductase; Reviewed	97.85
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.85
PRK06370	463	mercuric reductase; Validated	97.83
PRK14727	479	putative mercuric reductase; Provisional	97.77
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.71
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.66
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.6
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.57
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.56
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.56
PRK13748	561	putative mercuric reductase; Provisional	97.49
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.47
TIGR02053	463	MerA mercuric reductase. This model represents the	97.47
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.42
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.41
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.4
PRK14694	468	putative mercuric reductase; Provisional	97.35
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.33
PRK06116	450	glutathione reductase; Validated	97.3
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.3
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.23
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	97.22
PLN02507	499	glutathione reductase	97.2
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.2
PTZ00058	561	glutathione reductase; Provisional	97.1
PLN02546	558	glutathione reductase	97.08
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.08
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.05
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.96
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	96.88
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.75
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.69
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.62
PTZ00052	499	thioredoxin reductase; Provisional	95.15
COG2603	334	Predicted ATPase [General function prediction only	95.1
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	94.81
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	94.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	86.26
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	85.24
PRK14989	847	nitrite reductase subunit NirD; Provisional	82.12
KOG1093	725	consensus Predicted protein kinase (contains TBC a	80.42

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.83  E-value=1.8e-20  Score=164.15  Aligned_cols=99  Identities=26%  Similarity=0.210  Sum_probs=87.0

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..++++++.++++.+++.+|||||++.||..+|||||+        |+|+.++...+.++..                  
T Consensus        10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l~~------------------   63 (109)
T cd01533          10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGELAP------------------   63 (109)
T ss_pred             CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhcCC------------------
Confidence            46899999999864445789999999999999999999        9999988776655532                  


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCc-EEEEcccHHHHHHcC
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMV-TFLVQGGFQSWVKEG  397 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~Gfkn-Vy~LdGG~~aWkaAG  397 (558)
                        +++++||+||++|.||..+++.|+.+||++ |++|+||+.+|+.+|
T Consensus        64 --~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          64 --DPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             --CCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence              257899999999999999999999999988 999999999999876

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.81  E-value=6.2e-20  Score=158.51  Aligned_cols=98  Identities=20%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      .|+++++.+++. +++.+|||||++.||+.+|||||+        |+|+.++......+..                +..
T Consensus         3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~~~~----------------~~~   57 (101)
T cd01518           3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFWLDE----------------NLD   57 (101)
T ss_pred             cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHHHHh----------------hhh
Confidence            589999999984 567899999999999999999999        9999887643322210                001


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                      .+++++|||||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus        58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~  100 (101)
T cd01518          58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL  100 (101)
T ss_pred             hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence            2478999999999999999999999999999999999999996

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.79  E-value=3.3e-19  Score=155.93  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=90.2

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..++++++.+++. +.+.++||||++.||..+|||||+        |+|+.++...+.++                    
T Consensus         5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~~~--------------------   55 (108)
T PRK00162          5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMRQA--------------------   55 (108)
T ss_pred             cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHHhc--------------------
Confidence            5789999999984 456899999999999999999999        99988877665443                    


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                        +++++|++||.+|.||..++..|++.||++|++|+||+.+|+.+++|+++
T Consensus        56 --~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~  105 (108)
T PRK00162         56 --DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA  105 (108)
T ss_pred             --CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence              26889999999999999999999999999999999999999999999876

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.79  E-value=4.8e-19  Score=151.54  Aligned_cols=93  Identities=16%  Similarity=0.271  Sum_probs=79.4

Q ss_pred             cCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          273 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       273 ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      |+++++.+++.++ +..+|||||++.||..+|||||+        |+|+.++.....++..                   
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~~-------------------   53 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFAP-------------------   53 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhcc-------------------
Confidence            6889999998643 35789999999999999999999        9998877654433321                   


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                       .++++||+||++|.||..+++.|+.+||+ |++|+||+.+|.
T Consensus        54 -~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          54 -VRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             -cCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence             14789999999999999999999999998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=4.3e-19  Score=152.25  Aligned_cols=97  Identities=28%  Similarity=0.471  Sum_probs=85.0

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      .|+++++.++++.  +.+|||+|+++||..+|||||+        |+|+.++......                      
T Consensus         3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~----------------------   50 (99)
T cd01527           3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGLP----------------------   50 (99)
T ss_pred             ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhcccccC----------------------
Confidence            5899999998853  4899999999999999999999        9998877643211                      


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI  400 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV  400 (558)
                      ++++++||+||++|.|+..+++.|+++||++|++|+||+.+|+..|+|+
T Consensus        51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            2368899999999999999999999999999999999999999999875

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=8.3e-19  Score=150.98  Aligned_cols=99  Identities=22%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhcc
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV  352 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl  352 (558)
                      |+++++.++++++++++|||||++.||+.+|||||+        |+|+.++.....+...              ..+..+
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~~~--------------~~~~~~   58 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEIEE--------------DILDQL   58 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHhhH--------------HHHhhC
Confidence            678999999865567899999999999999999999        9998776543200000              001123


Q ss_pred             CCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          353 QDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       353 ~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                      +++++||+||++|.||..++..|+++||+ +++|.||+.+|+
T Consensus        59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence            47899999999999999999999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>PLN02160 thiosulfate sulfurtransferase

Probab=99.78  E-value=1e-18  Score=160.90  Aligned_cols=115  Identities=16%  Similarity=0.200  Sum_probs=87.5

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcc--cccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR  347 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGA--v~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~  347 (558)
                      ...+++.++.++++  ++.+|||||++.||..||||||  +        |+|+..+... ..+. .     ..+.. .+.
T Consensus        14 ~~~i~~~e~~~~~~--~~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~~-~~l~-~-----~~~~~-~~~   75 (136)
T PLN02160         14 VVSVDVSQAKTLLQ--SGHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTPQ-GRVK-N-----QEFLE-QVS   75 (136)
T ss_pred             eeEeCHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCccee--------cccchhcCcc-cccC-C-----HHHHH-HHH
Confidence            34689999999985  3568999999999999999999  7        7886433210 0010 0     00000 000


Q ss_pred             hhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          348 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       348 ~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                        ..++++++||+||++|.||..++..|.+.||++|++|.|||.+|.++|+|++...
T Consensus        76 --~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  130 (136)
T PLN02160         76 --SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE  130 (136)
T ss_pred             --hccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence              1135788999999999999999999999999999999999999999999998743

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.76  E-value=2.5e-18  Score=154.07  Aligned_cols=111  Identities=22%  Similarity=0.241  Sum_probs=89.9

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++++.+++++.++++|||||+++||..+|||||+        |+|+.++..+..++...            ...-
T Consensus         7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~~------------~~~~   66 (122)
T cd01526           7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKSL------------QELP   66 (122)
T ss_pred             ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhhh------------hhcc
Confidence            457999999999864467899999999999999999999        99998876654433210            0001


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCC-CcEEEEcccHHHHHHcCCce
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MVTFLVQGGFQSWVKEGLRI  400 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~Gf-knVy~LdGG~~aWkaAGLPV  400 (558)
                      ..++++++||+||++|.||..+++.|+..|| ++|++|+||+.+|.....+.
T Consensus        67 ~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~  118 (122)
T cd01526          67 LDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT  118 (122)
T ss_pred             cccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence            1235789999999999999999999999999 79999999999999876544

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.75  E-value=5.1e-18  Score=149.32  Aligned_cols=101  Identities=19%  Similarity=0.228  Sum_probs=85.3

Q ss_pred             CcccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635          270 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       270 ~~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      ...++++++.++++++ ++.+|||||++.||..+|||||+        ++|...+.....                    
T Consensus         7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~--------------------   58 (110)
T cd01521           7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT--------------------   58 (110)
T ss_pred             eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence            3479999999998644 46899999999999999999999        999877652210                    


Q ss_pred             hhccCCCcEEEEEeCCCh--hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635          349 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI  400 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~--RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV  400 (558)
                       ..++++++||+||++|.  ++..+++.|+++||+ +++|+||+.+|+.+|+|+
T Consensus        59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence             12347899999999884  899999999999995 999999999999999975

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.75  E-value=6e-18  Score=146.10  Aligned_cols=97  Identities=27%  Similarity=0.379  Sum_probs=83.1

Q ss_pred             ccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          272 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       272 ~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      .|+++++.+++... .+.++||||+++||..+|||||+        |+|+.++......+..                  
T Consensus         1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~~~------------------   54 (101)
T cd01528           1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKELDS------------------   54 (101)
T ss_pred             CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHhcc------------------
Confidence            47899999998643 35899999999999999999999        9999887765544321                  


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                       .+++++||+||++|.||..+++.|.++||++|++|+||+.+|..
T Consensus        55 -~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~   98 (101)
T cd01528          55 -DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL   98 (101)
T ss_pred             -cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence             12588999999999999999999999999999999999999975

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.75  E-value=4.6e-18  Score=144.17  Aligned_cols=93  Identities=27%  Similarity=0.377  Sum_probs=81.7

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhh--cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~--GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      .|+++++.+++++++++++||||++.||..  +|||||+        |+|+.++...+..                    
T Consensus         1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~~--------------------   52 (96)
T cd01444           1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLGD--------------------   52 (96)
T ss_pred             CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHhh--------------------
Confidence            378899999885435689999999999999  9999999        9999887665433                    


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                        ++++++||+||++|.|+..+++.|+..||++|++|+||+.+|+
T Consensus        53 --~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          53 --LDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             --cCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence              2378899999999999999999999999999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.73  E-value=1.1e-17  Score=144.50  Aligned_cols=100  Identities=17%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             cCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhh---hHHhhhcCCccchhhHHHHHHhh
Q 008635          273 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       273 ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~---~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      |+++++.+++.++ ++.+|||||++.||..||||||+        |+|+.++..   .+..++.          ...+..
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~~~~----------~~~~~~   62 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQLPT----------VPRLEN   62 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhcccccccccccc----------hHHHHh
Confidence            6889999998642 36799999999999999999999        999876532   1111110          000000


Q ss_pred             hhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                          .++++||+||.+|.||..+++.|+.+||++|++|+||+.+|+
T Consensus        63 ----~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          63 ----YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             ----hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence                147899999999999999999999999999999999999996

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.73  E-value=1.5e-17  Score=140.95  Aligned_cols=89  Identities=22%  Similarity=0.271  Sum_probs=78.3

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhcc
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV  352 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl  352 (558)
                      ++|+++.+++.  ++.++||+|++++|..+|||||+        |+|+.++...+..                      +
T Consensus         1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~~----------------------~   48 (90)
T cd01524           1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLNE----------------------L   48 (90)
T ss_pred             CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHHh----------------------c
Confidence            47889999873  57899999999999999999999        9998877655432                      2


Q ss_pred             CCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          353 QDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       353 ~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                      +++++||+||++|.++..+++.|++.|| ++++|+||+.+|+
T Consensus        49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence            3678999999999999999999999999 9999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.72  E-value=1.1e-17  Score=143.25  Aligned_cols=102  Identities=22%  Similarity=0.304  Sum_probs=80.9

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhh-hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef-~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      |+++++.++++ +++.+|||+|++.+| ..||||||+        |+|+..+.........    +          ...+
T Consensus         1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~~~~----~----------~~~~   57 (103)
T cd01447           1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADPDSP----Y----------HKPA   57 (103)
T ss_pred             CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCcccc----c----------cccC
Confidence            57889999884 457899999999998 569999999        9997665432211000    0          0012


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG  397 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG  397 (558)
                      ++++++||+||++|.|+..+++.|+.+||++|++|+||+.+|..+|
T Consensus        58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            4578999999999999999999999999999999999999998765

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.72  E-value=1.7e-17  Score=154.48  Aligned_cols=98  Identities=18%  Similarity=0.293  Sum_probs=84.3

Q ss_pred             HHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcE
Q 008635          278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK  357 (558)
Q Consensus       278 l~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~  357 (558)
                      +.+++..+.+.+|||||++.+|+.+|||||+        ++|..+|...+.++                      +++++
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~~l----------------------~~~~~   51 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALEKL----------------------PAAER   51 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHHhc----------------------CCCCC
Confidence            3455544456899999999999999999999        89988777665543                      25789


Q ss_pred             EEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          358 VIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       358 VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      ||+||.+|.+|..+++.|+..||++|++|+||+.+|+.+|+|++...+
T Consensus        52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~   99 (145)
T cd01535          52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET   99 (145)
T ss_pred             EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence            999999999999999999999999999999999999999999987544

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.72  E-value=2.1e-17  Score=156.58  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=82.0

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChh----hhhhc---------CCCcccccccccccCCCc---hhhhhhHHhhhcCC
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG  334 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~----Ef~~G---------HIPGAv~a~~~~~~nIPL---~eL~~~l~eL~~~~  334 (558)
                      ..|+++++.+++. +++.+|||||+++    ||..|         |||||+        |+|.   .++......     
T Consensus        36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~~~-----  101 (162)
T TIGR03865        36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAWQA-----  101 (162)
T ss_pred             cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCchhH-----
Confidence            4799999999995 4568999999876    45544         999999        7774   222221100     


Q ss_pred             ccchhhHHHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635          335 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI  400 (558)
Q Consensus       335 ~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV  400 (558)
                           .+ ...+..+....++++||+||++|. ||..+++.|+++||++|++|+|||.+|+.+|+|+
T Consensus       102 -----~~-~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       102 -----YF-RRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             -----HH-HHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence                 00 011111112247899999999997 8999999999999999999999999999999985

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.72  E-value=2.4e-17  Score=149.21  Aligned_cols=111  Identities=22%  Similarity=0.345  Sum_probs=79.7

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhH--HhhhcCCc----------cchhh
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--KKLLRGGR----------ELDDT  340 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l--~eL~~~~~----------~L~~~  340 (558)
                      |+++++.+++.  ++.+|||||++.||..||||||+        |+|+..+..+.  ..+.+...          .....
T Consensus         1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (128)
T cd01520           1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK   70 (128)
T ss_pred             CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence            68999999985  56899999999999999999999        99986443211  00000000          00000


Q ss_pred             HHHHHHhhh--hccCCCcEEEEEeC-CChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          341 LTAAVIRNL--KIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       341 l~aa~i~~L--kgl~kdk~VVVyC~-sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      +. .....+  .+++++++||+||+ +|.||..++++|+.+|| +|++|+||+.+|+.
T Consensus        71 ~~-~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          71 LK-RILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HH-HHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            00 011111  25678999999997 68899999999999999 69999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.72  E-value=2.3e-17  Score=142.54  Aligned_cols=104  Identities=22%  Similarity=0.251  Sum_probs=79.8

Q ss_pred             CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccC
Q 008635          274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ  353 (558)
Q Consensus       274 Sp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~  353 (558)
                      +++++.++++.+++.+|||+|++.||..||||||+        |+|+.++.+...   ....    .+.. .+. ..+++
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~---~~~~----~~~~-~~~-~~~~~   64 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDALA---LSEE----EFEK-KYG-FPKPS   64 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhhhC---CCHH----HHHH-Hhc-ccCCC
Confidence            57788888731467999999999999999999999        999877654211   0000    1111 111 11345


Q ss_pred             CCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          354 DRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       354 kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                      ++++||+||.+|.||..+++.|+.+||++|++|+||+.+|.
T Consensus        65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence            78999999999999999999999999999999999999996

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.71  E-value=2.9e-17  Score=148.04  Aligned_cols=99  Identities=21%  Similarity=0.301  Sum_probs=80.8

Q ss_pred             ccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCch-hhhhhHHhhhcCCccchhhHHHHH
Q 008635          272 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV  345 (558)
Q Consensus       272 ~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~-eL~~~l~eL~~~~~~L~~~l~aa~  345 (558)
                      .|+++++.+++.++     ++++|||||++.||..||||||+        |+|+. ++...+......            
T Consensus         3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~~~~------------   62 (121)
T cd01530           3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDKPGV------------   62 (121)
T ss_pred             ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHhhcc------------
Confidence            58999999999643     46899999999999999999999        99986 465543221100            


Q ss_pred             HhhhhccCCCcEEEEEeC-CChhHHHHHHHHHHc------------CCCcEEEEcccHHHHH
Q 008635          346 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMVTFLVQGGFQSWV  394 (558)
Q Consensus       346 i~~Lkgl~kdk~VVVyC~-sG~RS~~AA~~L~~~------------GfknVy~LdGG~~aWk  394 (558)
                          ..++++++|||||. +|.||..+++.|+.+            ||++||+|+|||.+|.
T Consensus        63 ----~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          63 ----ASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             ----cccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence                11347899999997 999999999999985            9999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.71  E-value=3.2e-17  Score=173.67  Aligned_cols=109  Identities=27%  Similarity=0.352  Sum_probs=93.6

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++++.++++  ++.+|||||+++||..+|||||+        |+|+.++...+.++.                   
T Consensus         3 ~~is~~el~~~l~--~~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~~-------------------   53 (376)
T PRK08762          3 REISPAEARARAA--QGAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETHL-------------------   53 (376)
T ss_pred             ceeCHHHHHHHHh--CCCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhhc-------------------
Confidence            4689999999985  45899999999999999999999        999988766544322                   


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCccchh
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETAL  409 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~~al  409 (558)
                       .+++++||+||++|.||..+++.|+++||++|++|+||+.+|++.|+|++......+.
T Consensus        54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~~  111 (376)
T PRK08762         54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTDE  111 (376)
T ss_pred             -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCHH
Confidence             1368999999999999999999999999999999999999999999999886554333

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.71  E-value=1.5e-17  Score=147.79  Aligned_cols=110  Identities=24%  Similarity=0.281  Sum_probs=83.6

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCCh-------hhhhhcCCCcccccccccccCCCchhhhhhHHh---hhcCCccchhhHH
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGSVKK---LLRGGRELDDTLT  342 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp-------~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~e---L~~~~~~L~~~l~  342 (558)
                      ++++++.+++. +++.+|||+|++       .+|+.+|||||+        |+|+.++......   ...+..++...+ 
T Consensus         2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~-   71 (122)
T cd01448           2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELL-   71 (122)
T ss_pred             cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHH-
Confidence            78999999985 457899999999       999999999999        9998776542111   111111111111 


Q ss_pred             HHHHhhhhccCCCcEEEEEeCC-ChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635          343 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG  397 (558)
Q Consensus       343 aa~i~~Lkgl~kdk~VVVyC~s-G~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG  397 (558)
                           ...+++++++|||||++ |.++..+++.|+.+||++|++|+|||.+|..+|
T Consensus        72 -----~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          72 -----GSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             -----HHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence                 11245679999999999 589999999999999999999999999998865

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.71  E-value=5.4e-17  Score=139.68  Aligned_cols=108  Identities=29%  Similarity=0.471  Sum_probs=80.3

Q ss_pred             CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccC
Q 008635          274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ  353 (558)
Q Consensus       274 Sp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~  353 (558)
                      ||+|+.+++ .+++.+|||+|++.+|..+|||||+        |+|...+...      ........+...........+
T Consensus         1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~   65 (113)
T PF00581_consen    1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD------EPSLSEDKLDEFLKELGKKID   65 (113)
T ss_dssp             -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS------SSBCHHHHHHHHHHHHTHGST
T ss_pred             CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc------ccccccccccccccccccccc
Confidence            689999999 6789999999999999999999999        8887554100      000001111112222233456


Q ss_pred             CCcEEEEEeCCChhHHHHHHH-----HHHcCCCcEEEEcccHHHHHHc
Q 008635          354 DRSKVIVMDADGTRSKGIARS-----LRKLGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       354 kdk~VVVyC~sG~RS~~AA~~-----L~~~GfknVy~LdGG~~aWkaA  396 (558)
                      ++++||+||..|.++..++..     |..+||++|++|+|||.+|.++
T Consensus        66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            788999999999988887776     8999999999999999999874

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.71  E-value=2.6e-17  Score=142.06  Aligned_cols=91  Identities=31%  Similarity=0.494  Sum_probs=80.7

Q ss_pred             CCCCcEEEEeCChhhhhhcCCCc-ccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEe
Q 008635          284 GKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMD  362 (558)
Q Consensus       284 ~~e~avLIDVRsp~Ef~~GHIPG-Av~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC  362 (558)
                      ..++.+|||||++.||+.+|||+ ++        |+|+.++......+.                    .+++++|||||
T Consensus        17 ~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~ivv~C   68 (110)
T COG0607          17 AGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPIVVYC   68 (110)
T ss_pred             ccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeEEEEe
Confidence            45689999999999999999999 98        999998877543321                    13789999999


Q ss_pred             CCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          363 ADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       363 ~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                      ++|.||..++..|+.+||++++++.||+.+|...++|+..
T Consensus        69 ~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~  108 (110)
T COG0607          69 ASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR  108 (110)
T ss_pred             CCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence            9999999999999999999999999999999999999875

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.70  E-value=4e-17  Score=136.03  Aligned_cols=99  Identities=27%  Similarity=0.366  Sum_probs=77.0

Q ss_pred             CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCC
Q 008635          285 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD  364 (558)
Q Consensus       285 ~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~s  364 (558)
                      +++.+|||+|++.||..+|||||+        |+|+..+.........       . .........+.+++++||+||.+
T Consensus         2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~iv~~c~~   65 (100)
T smart00450        2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGELDI-------L-EFEELLKRLGLDKDKPVVVYCRS   65 (100)
T ss_pred             CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCcCH-------H-HHHHHHHHcCCCCCCeEEEEeCC
Confidence            357899999999999999999999        9998776543211000       0 00111112335578999999999


Q ss_pred             ChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635          365 GTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR  399 (558)
Q Consensus       365 G~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP  399 (558)
                      |.++..+++.|++.||++|++|+||+.+|+..|.|
T Consensus        66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence            99999999999999999999999999999998865

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.69  E-value=4.3e-17  Score=148.62  Aligned_cols=115  Identities=22%  Similarity=0.261  Sum_probs=87.0

Q ss_pred             CCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635          269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       269 ~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      ....++.++++++++ .++.++||||+|+||..||||.++        |||+........ + ++     .++ ..++..
T Consensus        21 ~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~~~-l-~~-----~eF-~kqvg~   83 (136)
T KOG1530|consen   21 NPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGAGA-L-KN-----PEF-LKQVGS   83 (136)
T ss_pred             CcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccccc-c-CC-----HHH-HHHhcc
Confidence            345789999999984 455999999999999999999999        999633222111 0 00     000 011111


Q ss_pred             hhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCcee
Q 008635          349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIK  401 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~  401 (558)
                      .+ -+.|++|||+|++|.||..|...|..+||+||.++.|||.+|.+.++|..
T Consensus        84 ~k-p~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen   84 SK-PPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             cC-CCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            11 23578999999999999999999999999999999999999999998764

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.69  E-value=6.7e-17  Score=138.34  Aligned_cols=86  Identities=23%  Similarity=0.291  Sum_probs=70.7

Q ss_pred             CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCC
Q 008635          285 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD  364 (558)
Q Consensus       285 ~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~s  364 (558)
                      +++.+|||||++.||+.+|||||+        |+|..++......+.                .+...+++++||+||.+
T Consensus        10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~~~~----------------~~~~~~~~~~ivv~c~~   65 (96)
T cd01529          10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQELQ----------------ALEAPGRATRYVLTCDG   65 (96)
T ss_pred             CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHHHHH----------------HhhcCCCCCCEEEEeCC
Confidence            457899999999999999999999        999776543322210                01113478899999999


Q ss_pred             ChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          365 GTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       365 G~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                      |.++..+++.|+..||++|++|+||+.+|+
T Consensus        66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~   95 (96)
T cd01529          66 SLLARFAAQELLALGGKPVALLDGGTSAWV   95 (96)
T ss_pred             hHHHHHHHHHHHHcCCCCEEEeCCCHHHhc
Confidence            999999999999999999999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.68  E-value=8.8e-17  Score=141.67  Aligned_cols=106  Identities=19%  Similarity=0.239  Sum_probs=79.9

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhhh-----------cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhH
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL  341 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~~-----------GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l  341 (558)
                      ++++++.++++ +++.+|||||++.||..           ||||||+        |+|+.++......+ +...++.   
T Consensus         1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~~~~-~~~~~~~---   67 (118)
T cd01449           1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDEDGTF-KSPEELR---   67 (118)
T ss_pred             CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCCCCc-CCHHHHH---
Confidence            57889988884 45689999999999987           9999999        99987654321000 1101111   


Q ss_pred             HHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       342 ~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                        ..+.. .+++++++||+||++|.||.++++.|+.+||++|++|+||+.+|.
T Consensus        68 --~~~~~-~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          68 --ALFAA-LGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             --HHHHH-cCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence              01111 134578999999999999999999999999999999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.68  E-value=9e-17  Score=137.28  Aligned_cols=84  Identities=25%  Similarity=0.335  Sum_probs=69.6

Q ss_pred             CCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeC
Q 008635          284 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA  363 (558)
Q Consensus       284 ~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~  363 (558)
                      ++++++|||||++.||..+||||++        |+|+.++........                    .+++++||+||+
T Consensus         7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~~~--------------------~~~~~~ivl~c~   58 (92)
T cd01532           7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWVRI--------------------PRRDTPIVVYGE   58 (92)
T ss_pred             cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHhhC--------------------CCCCCeEEEEeC
Confidence            4567899999999999999999999        999877643211111                    025889999999


Q ss_pred             CChh--HHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          364 DGTR--SKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       364 sG~R--S~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      +|.|  |..+++.|+.+||++|++|+||+.+|++
T Consensus        59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~   92 (92)
T cd01532          59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA   92 (92)
T ss_pred             CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence            9987  6899999999999999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.68  E-value=1.4e-16  Score=140.61  Aligned_cols=101  Identities=18%  Similarity=0.256  Sum_probs=81.4

Q ss_pred             cccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       271 ~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ..|+++++.+++..+ ++.++||||++ ||..+|||||+        ++|++++...+.++.+.                
T Consensus         2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~~~~----------------   56 (113)
T cd01531           2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQLVQL----------------   56 (113)
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHHHHH----------------
Confidence            358999999998643 45789999999 99999999999        99998887665554321                


Q ss_pred             hccCCCcEEEEEeC-CChhHHHHHHHHHH--------cCCCcEEEEcccHHHHHHc
Q 008635          350 KIVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       350 kgl~kdk~VVVyC~-sG~RS~~AA~~L~~--------~GfknVy~LdGG~~aWkaA  396 (558)
                      .+..++++||+||. +|.|+..+++.|.+        .||++|++|+||+.+|++.
T Consensus        57 ~~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          57 LSGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             HhcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            11236789999998 66899999988754        4999999999999999864

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.68  E-value=6.3e-17  Score=144.51  Aligned_cols=103  Identities=25%  Similarity=0.335  Sum_probs=80.6

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhh-hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~-~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      |+++++.++++++++.++||||++.||+ .+|||||+        |+|+.++......         ..+.. .+..  .
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~~~---------~~~~~-~l~~--~   60 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDMEIN---------PNFLA-ELEE--K   60 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccccC---------HHHHH-HHHh--h
Confidence            6889999999654678999999999999 99999999        9997765421100         00000 0000  1


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      .+++++||+||++|.||..+++.|+++||++|++|.|||.+|+.
T Consensus        61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~  104 (117)
T cd01522          61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD  104 (117)
T ss_pred             CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence            24789999999999999999999999999999999999999965

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>PRK01415 hypothetical protein; Validated

Probab=99.63  E-value=9.2e-16  Score=154.71  Aligned_cols=102  Identities=15%  Similarity=0.216  Sum_probs=85.0

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+|+++.++++ ++++++||||++.||+.||||||+        |+|+..+++.......                ..
T Consensus       112 ~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~~~~----------------~~  166 (247)
T PRK01415        112 EYIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAWVQQ----------------NQ  166 (247)
T ss_pred             cccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHHHhh----------------hh
Confidence            3599999999995 578999999999999999999999        9998877643211100                01


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG  397 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG  397 (558)
                      ..+++++|++||.+|.||..|+..|+++||++||+|+||+.+|.+..
T Consensus       167 ~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        167 ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             hhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence            12478999999999999999999999999999999999999998754

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.63  E-value=9.2e-16  Score=134.94  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCC
Q 008635          286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG  365 (558)
Q Consensus       286 e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG  365 (558)
                      ....+||+|+++||..+|||||+        |+|+.++...+.++..                    +++++||+||.+|
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~~--------------------~~~~~vvlyC~~G   68 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAVP--------------------DKNDTVKLYCNAG   68 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhCC--------------------CCCCeEEEEeCCC
Confidence            45689999999999999999999        9999988776655432                    2678999999999


Q ss_pred             hhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          366 TRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       366 ~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      .||..++..|+++||++|+++ ||+.+|..
T Consensus        69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~   97 (101)
T TIGR02981        69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM   97 (101)
T ss_pred             HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence            999999999999999999985 99999975

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.63  E-value=8.5e-16  Score=126.81  Aligned_cols=88  Identities=30%  Similarity=0.427  Sum_probs=73.5

Q ss_pred             HHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcE
Q 008635          278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK  357 (558)
Q Consensus       278 l~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~  357 (558)
                      +.+++. +++.++||+|++.||+.+||||++        ++|..++......                    .+.+++++
T Consensus         2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~~~--------------------~~~~~~~~   52 (89)
T cd00158           2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERAAL--------------------LELDKDKP   52 (89)
T ss_pred             hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHHHh--------------------hccCCCCe
Confidence            344553 568899999999999999999999        9998776543211                    11247899


Q ss_pred             EEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          358 VIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       358 VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                      ||+||..|.++..+++.|+..||+++++|+||+.+|+
T Consensus        53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence            9999999999999999999999999999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.62  E-value=1.2e-15  Score=134.76  Aligned_cols=99  Identities=18%  Similarity=0.292  Sum_probs=76.6

Q ss_pred             cccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHH
Q 008635          271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV  345 (558)
Q Consensus       271 ~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~  345 (558)
                      ..|+++++.+++.++     ++.+|||||++ ||..+|||||+        |+|+.++...+.++...            
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~~~------------   60 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVYAL------------   60 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHHHH------------
Confidence            358999999999643     36899999999 99999999999        99998877655443321            


Q ss_pred             HhhhhccCCCcEEEEEeCC-ChhHHHHHHHHH----HcCC--CcEEEEcccHHHHH
Q 008635          346 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MVTFLVQGGFQSWV  394 (558)
Q Consensus       346 i~~Lkgl~kdk~VVVyC~s-G~RS~~AA~~L~----~~Gf--knVy~LdGG~~aWk  394 (558)
                         +. ..+.++||+||.+ |.||..++..|.    +.||  .++++|+||+.+|.
T Consensus        61 ---~~-~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          61 ---FS-LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             ---hh-hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence               00 0245789999997 579888886654    3475  78999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.62  E-value=5.3e-16  Score=158.12  Aligned_cols=119  Identities=16%  Similarity=0.221  Sum_probs=89.5

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCC----------hhhhhhcCCCcccccccccccCCCchhhhhhHH---hhhcCCccch
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGGSVK---KLLRGGRELD  338 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRs----------p~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~---eL~~~~~~L~  338 (558)
                      .++++++.+++ ++++.+|||+|+          +.+|..||||||+        |+|+..+.....   .+.+....++
T Consensus         6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~   76 (281)
T PRK11493          6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA   76 (281)
T ss_pred             ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence            48999999998 456799999996          7899999999999        887665433211   1111111111


Q ss_pred             hhHHHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          339 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       339 ~~l~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      ..     +. -.+++++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|.++|+|++...+
T Consensus        77 ~~-----~~-~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  138 (281)
T PRK11493         77 VA-----MR-ELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV  138 (281)
T ss_pred             HH-----HH-HcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence            11     11 125678999999999877 467889999999999999999999999999999987643

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.62  E-value=1.2e-15  Score=154.65  Aligned_cols=104  Identities=13%  Similarity=0.168  Sum_probs=84.7

Q ss_pred             CCcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635          269 YSGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA  343 (558)
Q Consensus       269 ~~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a  343 (558)
                      ....++++++.+++++.     ++.+|||||++.||+.||||||+        |+|+.++.+....+...          
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l~~~----------  169 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEALAAH----------  169 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHHHhh----------
Confidence            34579999999988542     24799999999999999999999        99998876543322110          


Q ss_pred             HHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHc
Q 008635          344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       344 a~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA  396 (558)
                           +..+ ++++||+||++|.|+..|+..|++.||++|++|+||+.+|.+.
T Consensus       170 -----~~~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        170 -----RADL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             -----hhhc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence                 0011 6899999999999999999999999999999999999999873

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.61  E-value=1.1e-15  Score=159.11  Aligned_cols=119  Identities=16%  Similarity=0.261  Sum_probs=89.8

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeC--------C-hhhhhhcCCCcccccccccccCCCchhhhhhHHhh---hcCCccch
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKL---LRGGRELD  338 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVR--------s-p~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL---~~~~~~L~  338 (558)
                      ..|+++++.+++. +++.+|||+|        + .++|..||||||+        ++|+.++.......   .+....++
T Consensus        22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~   92 (320)
T PLN02723         22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA   92 (320)
T ss_pred             ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence            4699999999984 5678999996        3 3789999999999        88876655432111   11111122


Q ss_pred             hhHHHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          339 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       339 ~~l~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      .     .+.. .++.++++|||||..|. .+.+++|+|+.+||++|++|+||+.+|+++|+|++...
T Consensus        93 ~-----~l~~-~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~  153 (320)
T PLN02723         93 A-----AVSA-LGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA  153 (320)
T ss_pred             H-----HHHH-cCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence            1     1221 24568899999999886 56788999999999999999999999999999998753

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.60  E-value=2.9e-15  Score=132.60  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCC
Q 008635          286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG  365 (558)
Q Consensus       286 e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG  365 (558)
                      ..-+|||+|+++||+.+|||||+        |+|+.++...+..+..                    +++++||+||++|
T Consensus        19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~l~~--------------------~~~~~IVlyC~~G   70 (104)
T PRK10287         19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIATAVP--------------------DKNDTVKLYCNAG   70 (104)
T ss_pred             CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHhcCC--------------------CCCCeEEEEeCCC
Confidence            34589999999999999999999        9999888766554432                    2578999999999


Q ss_pred             hhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          366 TRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       366 ~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      .||..+++.|.++||++|++ .||+.+|.-
T Consensus        71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~   99 (104)
T PRK10287         71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM   99 (104)
T ss_pred             hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence            99999999999999999987 699999964

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.59  E-value=2e-15  Score=139.40  Aligned_cols=108  Identities=21%  Similarity=0.206  Sum_probs=79.8

Q ss_pred             cCHHHHHHHHhC---CCCcEEEEeCCh--------hhhhh------------cCCCcccccccccccCCCchhhhhhHHh
Q 008635          273 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVGGSVKK  329 (558)
Q Consensus       273 ISp~El~elL~~---~e~avLIDVRsp--------~Ef~~------------GHIPGAv~a~~~~~~nIPL~eL~~~l~e  329 (558)
                      ++++++.+.+.+   +++.+|||+|..        ++|..            ||||||+        ++|+.++...-..
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~   72 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF   72 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence            578899888852   457899999987        89988            9999999        8886655321111


Q ss_pred             h---hcCCccchhhHHHHHHhhhhccCCCcEEEEEeCC---ChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635          330 L---LRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMVTFLVQGGFQSWV  394 (558)
Q Consensus       330 L---~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~s---G~RS~~AA~~L~~~GfknVy~LdGG~~aWk  394 (558)
                      .   .++..+++.     .+. -.++.++++||+||..   |.++.+++++|+.+||++|++|+||+.+|+
T Consensus        73 ~~~~~p~~~~~~~-----~~~-~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          73 EESMEPSEAEFAA-----MFE-AKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             CCCCCCCHHHHHH-----HHH-HcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            1   111111111     111 1256789999999986   779999999999999999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.58  E-value=4.6e-15  Score=158.42  Aligned_cols=175  Identities=19%  Similarity=0.267  Sum_probs=121.1

Q ss_pred             CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhh-HHHH---HH---
Q 008635          189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGT-SATL---WI---  259 (558)
Q Consensus       189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~-~~~L---~l---  259 (558)
                      |+|..|++|+...  .+.+|.+.+  ++.|+-.++| .. ++.+.+.-.+++..  |..--.+.+.. ....   .+   
T Consensus       184 ~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~g-~~-~a~e~ik~l~g~~~--~~~~~l~~~d~~~~~~~~~~~~~~  257 (392)
T PRK07878        184 GLNYRDLYPEPPPPGMVPSCAEGG--VLGVLCASIG-SI-MGTEAIKLITGIGE--PLLGRLMVYDALEMTYRTIKIRKD  257 (392)
T ss_pred             CCeeeeecCCCCCccCCCCCccCC--ccchHHHHHH-HH-HHHHHHHHHhCCCC--CCcCcEEEEECCCCceeeEeeccC
Confidence            6788999886433  557899988  8888666666 33 66676666666421  21000000000 0000   00   


Q ss_pred             ----------HHHHH-H-------hcCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCch
Q 008635          260 ----------FYWWW-T-------YGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP  321 (558)
Q Consensus       260 ----------~Yap~-~-------~~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~  321 (558)
                                .|-.+ .       .......|+++++.++++++++.+|||||+++||+.+|||||+        |+|+.
T Consensus       258 ~~C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~  329 (392)
T PRK07878        258 PSTPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKS  329 (392)
T ss_pred             CCCCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChH
Confidence                      01000 0       0011236899999999864456799999999999999999999        99988


Q ss_pred             hhhh--hHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635          322 EVGG--SVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR  399 (558)
Q Consensus       322 eL~~--~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP  399 (558)
                      ++..  .+.+                      ++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus       330 ~l~~~~~~~~----------------------l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        330 EILSGEALAK----------------------LPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             HhcchhHHhh----------------------CCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence            7754  2221                      347899999999999999999999999999999999999999987654

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.58  E-value=5.1e-15  Score=166.08  Aligned_cols=119  Identities=18%  Similarity=0.208  Sum_probs=90.1

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh---HHhhhcCCccchhhHHHHHHh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLTAAVIR  347 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~---l~eL~~~~~~L~~~l~aa~i~  347 (558)
                      ..|+++++.+++. +++++|||+|++++|..||||||+        ++|++.+...   .....+...+++.     .+.
T Consensus         9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~-----~l~   74 (610)
T PRK09629          9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQ-----LFG   74 (610)
T ss_pred             ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHH-----HHH
Confidence            4699999999994 567999999999999999999999        7775432110   0001111111111     222


Q ss_pred             hhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          348 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       348 ~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      . .+++++++||+||+.|. ++.+++|+|+.+||++|++|+||+.+|+.+|+|++...
T Consensus        75 ~-lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~  131 (610)
T PRK09629         75 E-LGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV  131 (610)
T ss_pred             H-cCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence            2 24568999999999875 88899999999999999999999999999999997754

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.57  E-value=7.2e-15  Score=152.95  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=84.5

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..++++++.+++. +++.+|||||++.||+.||||||+        |+|+.++++....+...                .
T Consensus       112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~l~~~----------------~  166 (314)
T PRK00142        112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPWVEEN----------------L  166 (314)
T ss_pred             cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHHHHHh----------------c
Confidence            4699999999984 567899999999999999999999        99998877543322110                1


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      ...++++||+||.+|.|+..++..|+++||++|++|+||+.+|..
T Consensus       167 ~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~  211 (314)
T PRK00142        167 DPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE  211 (314)
T ss_pred             CCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence            123789999999999999999999999999999999999999976

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.56  E-value=3.4e-15  Score=152.20  Aligned_cols=113  Identities=20%  Similarity=0.213  Sum_probs=83.9

Q ss_pred             CHHHHHHHHhCCCCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHH
Q 008635          274 SPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT  342 (558)
Q Consensus       274 Sp~El~elL~~~e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~  342 (558)
                      +.+++...+ +.++.+|||+|+++||.           .||||||+        |+|..++... .. .+...+++..+ 
T Consensus       156 ~~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~-~~-~~~~~~l~~~~-  223 (281)
T PRK11493        156 RLTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE-GE-LKTTDELDAIF-  223 (281)
T ss_pred             cHHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC-CC-cCCHHHHHHHH-
Confidence            334444444 33468999999999995           69999999        9997765431 01 11111111111 


Q ss_pred             HHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecC
Q 008635          343 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKEL  403 (558)
Q Consensus       343 aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~  403 (558)
                           .-.+++++++||+||++|.||..+++.|+.+||++|++|+|||..|.. .++|++.+
T Consensus       224 -----~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~  280 (281)
T PRK11493        224 -----FGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA  280 (281)
T ss_pred             -----HhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence                 123567889999999999999999999999999999999999999998 79998764

>PRK07411 hypothetical protein; Validated

Probab=99.54  E-value=1.9e-14  Score=153.66  Aligned_cols=182  Identities=20%  Similarity=0.196  Sum_probs=119.5

Q ss_pred             CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCC--CCchHHHH--------HH-----
Q 008635          189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPN--DPIVPFVV--------FL-----  251 (558)
Q Consensus       189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~--~PVLa~ai--------~~-----  251 (558)
                      ++|..|++|+...  .+.+|.+.+  |+.|+-.+.| .+ ++.+.+.-.+|+...  ..++.+-.        .+     
T Consensus       176 ~~c~~c~~~~~~~~~~~~~c~~~g--vlg~~~~~~g-~~-~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~  251 (390)
T PRK07411        176 GPNYRDLYPEPPPPGMVPSCAEGG--VLGILPGIIG-VI-QATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPE  251 (390)
T ss_pred             CCChHHhcCCCCCcccCCCCccCC--cCcchHHHHH-HH-HHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCC
Confidence            5799999987533  566899999  8888777777 33 556666655553210  11110000        00     


Q ss_pred             ----hhHHHHHHH-HHHH------HhcCCCcccCHHHHHHHHhCCC-CcEEEEeCChhhhhhcCCCcccccccccccCCC
Q 008635          252 ----GTSATLWIF-YWWW------TYGGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVY  319 (558)
Q Consensus       252 ----g~~~~L~l~-Yap~------~~~G~~~~ISp~El~elL~~~e-~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIP  319 (558)
                          ........+ ..++      ........|+++++.++++.++ +.+|||||+++||+.+|||||+        |+|
T Consensus       252 c~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP  323 (390)
T PRK07411        252 RPVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVP  323 (390)
T ss_pred             CCccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------Ecc
Confidence                000000000 0000      0012234699999999986433 5799999999999999999999        999


Q ss_pred             chhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635          320 LPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR  399 (558)
Q Consensus       320 L~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP  399 (558)
                      +.++..... ..                .+..+.++++||+||++|.||..+++.|+++||+ ++.|.||+.+|++...|
T Consensus       324 ~~~l~~~~~-~~----------------~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~-~~~l~GG~~~W~~~~~p  385 (390)
T PRK07411        324 LPDIENGPG-VE----------------KVKELLNGHRLIAHCKMGGRSAKALGILKEAGIE-GTNVKGGITAWSREVDP  385 (390)
T ss_pred             HHHhhcccc-hH----------------HHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCC-eEEecchHHHHHHhcCC
Confidence            887754210 00                0011236889999999999999999999999997 46899999999987665


Q ss_pred             e
Q 008635          400 I  400 (558)
Q Consensus       400 V  400 (558)
                      .
T Consensus       386 ~  386 (390)
T PRK07411        386 S  386 (390)
T ss_pred             C
Confidence            4

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.54  E-value=7.6e-15  Score=152.73  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=85.9

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhh-----------hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhH
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL  341 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef-----------~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l  341 (558)
                      ++.+++.+.+. +++.+|||+|++.||           ..||||||+        |+|+.++...-. ..+...+++..+
T Consensus       192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~~~~~~~~-~~~~~~el~~~~  261 (320)
T PLN02723        192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFPQMLDSSQ-TLLPAEELKKRF  261 (320)
T ss_pred             ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHHHhcCCCC-CCCCHHHHHHHH
Confidence            57778887773 456889999999998           469999999        999866543211 112212222111


Q ss_pred             HHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHc-CCceec
Q 008635          342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE-GLRIKE  402 (558)
Q Consensus       342 ~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA-GLPV~~  402 (558)
                      ..      .+++++++||+||++|.||..+++.|+.+||++|++|+|||..|... .+|++.
T Consensus       262 ~~------~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~  317 (320)
T PLN02723        262 EQ------EGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT  317 (320)
T ss_pred             Hh------cCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence            11      24668999999999999999999999999999999999999999874 678765

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.52  E-value=1.1e-14  Score=154.61  Aligned_cols=166  Identities=18%  Similarity=0.222  Sum_probs=111.4

Q ss_pred             CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCC--CCchHHHHHHhh-HHHHHHHHHH
Q 008635          189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPN--DPIVPFVVFLGT-SATLWIFYWW  263 (558)
Q Consensus       189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~--~PVLa~ai~~g~-~~~L~l~Yap  263 (558)
                      ++|..|++|+...  .+.+|.+.+  ++.|+-.+.| .. ++.+.+.-..|+.+.  ..++.    +.. ...+...-+.
T Consensus       182 ~~~~~~l~~~~~~~~~~~~c~~~g--vlg~~~~~ig-~~-~a~eaik~l~g~g~~l~g~ll~----~d~~~~~~~~~~~~  253 (370)
T PRK05600        182 GVGLRDLFPEQPSGDSIPDCATAG--VLGATTAVIG-AL-MATEAIKFLTGIGDVQPGTVLS----YDALTATTRSFRVG  253 (370)
T ss_pred             CCCcHhhCCCCCccccCCCCccCC--cchhHHHHHH-HH-HHHHHHHHHhCCCCCCcCcEEE----EECCCCEEEEEEec
Confidence            5688999987543  456788888  7888777777 34 667777666664211  11211    000 0000000000


Q ss_pred             --------HHh-cCC-CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCC---cccccccccccCCCchhhhhhH---
Q 008635          264 --------WTY-GGY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSV---  327 (558)
Q Consensus       264 --------~~~-~G~-~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIP---GAv~a~~~~~~nIPL~eL~~~l---  327 (558)
                              ..+ ..| ...++++++.+++. +++++|||||+++||+.+|||   ||+        |+|+.++++..   
T Consensus       254 ~~~~c~~~~~~~~~~~~~~~~~~el~~~l~-~~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~~  324 (370)
T PRK05600        254 ADPARPLVTRLRPSYEAARTDTTSLIDATL-NGSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADIL  324 (370)
T ss_pred             CCCCCCccccccCcchhcccCHHHHHHHHh-cCCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhhh
Confidence                    000 011 12589999999985 456799999999999999998   588        99999886532   


Q ss_pred             HhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCc-EEEEcccHH
Q 008635          328 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMV-TFLVQGGFQ  391 (558)
Q Consensus       328 ~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~Gfkn-Vy~LdGG~~  391 (558)
                      .++.                   .++++ +|||||++|.||+.|++.|+++||++ |++|+||+.
T Consensus       325 ~~l~-------------------~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        325 HALS-------------------PIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             hhcc-------------------ccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence            1111                   12244 99999999999999999999999986 999999985

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.50  E-value=1.2e-13  Score=141.89  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=88.0

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhhh----------cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHH
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT  342 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~~----------GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~  342 (558)
                      .+..+....+ +....+|||+|++++|..          ||||||+        |+|..++.+.- .+.+.      .-.
T Consensus       158 ~~~~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~~~-~~~~~------~~~  221 (285)
T COG2897         158 VDATLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVDDG-GLFKS------PEE  221 (285)
T ss_pred             CCHHHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhcCC-CccCc------HHH
Confidence            4556666666 356778999999999987          9999999        99988776521 12211      111


Q ss_pred             HHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecC
Q 008635          343 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKEL  403 (558)
Q Consensus       343 aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~  403 (558)
                      ...+....+++++++||+||.+|.||...+..|+.+|++++.+++|+|..|.+ .+.|++.+
T Consensus       222 ~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g  283 (285)
T COG2897         222 IARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG  283 (285)
T ss_pred             HHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence            12233345678999999999999999999999999999888999999999977 45577664

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.48  E-value=8.6e-14  Score=146.97  Aligned_cols=171  Identities=22%  Similarity=0.288  Sum_probs=114.0

Q ss_pred             CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhh-HHH---HHH---
Q 008635          189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGT-SAT---LWI---  259 (558)
Q Consensus       189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~-~~~---L~l---  259 (558)
                      ++|..|++|+...  ...+|.+.+  ++.|+-.+.| .. ++.|.+.-.+|+.  +|..--.+.+.. ...   +.+   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~c~~~g--v~g~~~~~~g-~~-~a~e~ik~l~g~~--~~l~~~l~~~d~~~~~~~~~~~~~~  239 (355)
T PRK05597        166 GPIYEDLFPTPPPPGSVPSCSQAG--VLGPVVGVVG-SA-MAMEALKLITGVG--TPLIGKLGYYDSLDGTWEYIPVVGN  239 (355)
T ss_pred             CCCHHHhCCCCCCccCCCCccccC--cchhHHHHHH-HH-HHHHHHHHHhCCC--CcCcCeEEEEECCCCeEEEEeccCC
Confidence            3688999987643  456788888  8888667767 33 5666666666532  111000000000 000   000   


Q ss_pred             --H-----H-HHHH-h-cCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHh
Q 008635          260 --F-----Y-WWWT-Y-GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKK  329 (558)
Q Consensus       260 --~-----Y-ap~~-~-~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~e  329 (558)
                        +     | .+.. . .+....++++++.++.   ++.+|||||+++||+.+|||||+        |+|+.++......
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~~~  308 (355)
T PRK05597        240 PAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGANP  308 (355)
T ss_pred             CCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcccc
Confidence              0     0 0000 0 0222357778877543   46799999999999999999999        9998877553211


Q ss_pred             hhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHc
Q 008635          330 LLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       330 L~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA  396 (558)
                      .                    .++++++||+||+.|.||..+++.|+++||++|++|+||+.+|.++
T Consensus       309 ~--------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~  355 (355)
T PRK05597        309 P--------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLDS  355 (355)
T ss_pred             c--------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence            1                    1236889999999999999999999999999999999999999763

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1.1e-13  Score=142.30  Aligned_cols=120  Identities=20%  Similarity=0.209  Sum_probs=88.9

Q ss_pred             ccCHHHHHHHHhCCC-----CcEEEEeCCh--hhhhhcCCCcccccccccccCCCchhhhhhH---HhhhcCCccchhhH
Q 008635          272 DLSPKSTLELLRGKE-----NAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVGGSV---KKLLRGGRELDDTL  341 (558)
Q Consensus       272 ~ISp~El~elL~~~e-----~avLIDVRsp--~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l---~eL~~~~~~L~~~l  341 (558)
                      .|+++++.+.+. ++     ++.+++++..  .+|..+|||||+        .++++.....-   ....+++..+...+
T Consensus        12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~   82 (285)
T COG2897          12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLL   82 (285)
T ss_pred             EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence            589999988874 33     5666666655  899999999999        66655543322   12222323333333


Q ss_pred             HHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCcc
Q 008635          342 TAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSE  406 (558)
Q Consensus       342 ~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~  406 (558)
                      .+      .|+.+|.+||+|+..+. .+.+++|+|+.+|++||++|+||+.+|+++|+|++...+.
T Consensus        83 ~~------~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~  142 (285)
T COG2897          83 GE------LGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPE  142 (285)
T ss_pred             HH------cCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCC
Confidence            33      35568999999997665 8999999999999999999999999999999999976553

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.46  E-value=8.8e-14  Score=144.35  Aligned_cols=181  Identities=22%  Similarity=0.273  Sum_probs=129.3

Q ss_pred             ecCCCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCC-CCCCchHHHHHHhhHHHHH----
Q 008635          186 YYYGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFD-PNDPIVPFVVFLGTSATLW----  258 (558)
Q Consensus       186 y~pGa~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~-~~~PVLa~ai~~g~~~~L~----  258 (558)
                      |--|+|++||||++++  ++.+|.|.+  |++|+-.++| . ++|+|.+.-..++. +-+|-+.  ++-|..+.+.    
T Consensus       201 y~~GPCYRClFP~Ppp~~~vt~C~dgG--VlGpv~GviG-~-mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r~irl  274 (427)
T KOG2017|consen  201 YNNGPCYRCLFPNPPPPEAVTNCADGG--VLGPVTGVIG-C-MQALETIKLIAGIGESLSGRLL--LFDGLSGHFRTIRL  274 (427)
T ss_pred             cCCCceeeecCCCCcChHHhcccccCc--eeecchhhhh-H-HHHHHHHHHHHccCccCCcceE--EEecccceeEEEEe
Confidence            4468999999999999  999999999  9999777788 3 47888777666643 1122221  1112221100    


Q ss_pred             -------------------HHHHHH-----------HhcCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCccc
Q 008635          259 -------------------IFYWWW-----------TYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR  308 (558)
Q Consensus       259 -------------------l~Yap~-----------~~~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv  308 (558)
                                         ..|-++           +.-....+|+..|+++++++.+..+|||||++.||+..|+|+|+
T Consensus       275 R~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~av  354 (427)
T KOG2017|consen  275 RSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAV  354 (427)
T ss_pred             ccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEeccccc
Confidence                               011110           11112336899999999976678999999999999999999999


Q ss_pred             ccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCC-CcEEEEc
Q 008635          309 RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MVTFLVQ  387 (558)
Q Consensus       309 ~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~Gf-knVy~Ld  387 (558)
                              |||+.+++.+..+-...  .+.              ...++|+|+|+.|..|.+|+|+|+...+ .+|+-+-
T Consensus       355 --------NIPL~~l~~~~~~~~~~--~~~--------------~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvi  410 (427)
T KOG2017|consen  355 --------NIPLKELRSRSGKKLQG--DLN--------------TESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVI  410 (427)
T ss_pred             --------ccchhhhhhhhhhhhcc--ccc--------------ccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhh
Confidence                    99999988765421110  110              1456799999999999999999997665 3688889


Q ss_pred             ccHHHHHHc
Q 008635          388 GGFQSWVKE  396 (558)
Q Consensus       388 GG~~aWkaA  396 (558)
                      ||+.+|...
T Consensus       411 gGl~~w~~~  419 (427)
T KOG2017|consen  411 GGLKAWAAK  419 (427)
T ss_pred             hHHHHHHHh
Confidence            999999764

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.46  E-value=1.4e-13  Score=143.28  Aligned_cols=108  Identities=19%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             CcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh--HHhhhcCC-----ccchhhHHHH----HHhhh-hccCC
Q 008635          287 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG-----RELDDTLTAA----VIRNL-KIVQD  354 (558)
Q Consensus       287 ~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~--l~eL~~~~-----~~L~~~l~aa----~i~~L-kgl~k  354 (558)
                      ..+|||||+|.||..||||||+        |+|+.+..++  ++.+.+..     ..++..+...    .+..+ +..++
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~   73 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADG   73 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCC
Confidence            4589999999999999999999        9998543222  11111100     0000001100    11111 12234


Q ss_pred             CcEEEEEeC-CChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecC
Q 008635          355 RSKVIVMDA-DGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       355 dk~VVVyC~-sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                      +++||+||. +|.||..+++.|+.+|| +|++|+||+.+|+..+.+....
T Consensus        74 ~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~  122 (311)
T TIGR03167        74 PPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE  122 (311)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence            556999995 78999999999999999 6999999999999998877653

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.46  E-value=4.1e-13  Score=121.65  Aligned_cols=113  Identities=20%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             ccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhH-HHHHHhhh
Q 008635          272 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL-TAAVIRNL  349 (558)
Q Consensus       272 ~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l-~aa~i~~L  349 (558)
                      .|+++++.++++.+ ++.+|||||++.+|..+|||||+        ++|++.+..+-  ...+...+...+ .......+
T Consensus         1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l   70 (132)
T cd01446           1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRR--LQGGKILLQQLLSCPEDRDRL   70 (132)
T ss_pred             CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHh--hcccchhhhhhcCCHHHHHHH
Confidence            37899999999643 57899999999999999999999        99987643211  100000000000 00011112


Q ss_pred             hccCCCcEEEEEeCCChh---------HHHHHHHHHH--cCCCcEEEEcccHHHHHH
Q 008635          350 KIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~R---------S~~AA~~L~~--~GfknVy~LdGG~~aWka  395 (558)
                      ... ++++|||||..+.+         ++.+++.|..  .|+.+|++|+|||.+|++
T Consensus        71 ~~~-~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~  126 (132)
T cd01446          71 RRG-ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS  126 (132)
T ss_pred             hcC-CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence            222 57899999998875         6677777777  477899999999999976

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.45  E-value=2.3e-13  Score=143.41  Aligned_cols=118  Identities=16%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh--HHhhhcCC----------ccchhhH
Q 008635          274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG----------RELDDTL  341 (558)
Q Consensus       274 Sp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~--l~eL~~~~----------~~L~~~l  341 (558)
                      ...++.+++.  ++.+|||||+|.||..||||||+        |+|+.+..++  ++.+.+..          ......+
T Consensus         4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l   73 (345)
T PRK11784          4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI   73 (345)
T ss_pred             cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence            4566776653  57899999999999999999999        9998543321  11111000          0000011


Q ss_pred             HHHHHhhhhcc-CCCcEEEEEe-CCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          342 TAAVIRNLKIV-QDRSKVIVMD-ADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       342 ~aa~i~~Lkgl-~kdk~VVVyC-~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                      .......+... +++++||+|| ++|.||..+++.|+.+|| +|++|+||+.+|+..+++...
T Consensus        74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~  135 (345)
T PRK11784         74 AAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE  135 (345)
T ss_pred             HHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence            11111111122 2688999999 578999999999999999 699999999999988775544

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.45  E-value=7.9e-14  Score=156.56  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=87.1

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhh--------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA  343 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~--------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a  343 (558)
                      .++.+++.+.+ ++++.+|||+|+++||.        .||||||+        |+|..++...-..+ +...++...+  
T Consensus       148 ~v~~e~v~~~l-~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~~~l-k~~~el~~~~--  215 (610)
T PRK09629        148 TATREYLQSRL-GAADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKARNL-RIRQDMPEIL--  215 (610)
T ss_pred             cccHHHHHHhh-CCCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCCCCC-CCHHHHHHHH--
Confidence            36778888887 35678899999999994        69999999        89875542211111 1111111111  


Q ss_pred             HHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecC
Q 008635          344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKEL  403 (558)
Q Consensus       344 a~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~  403 (558)
                          .-.+++++++||+||++|.||..+++.|+.+||++|++|+|||.+|.+ .++|+++.
T Consensus       216 ----~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~  272 (610)
T PRK09629        216 ----RDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP  272 (610)
T ss_pred             ----HHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence                113567899999999999999999999999999999999999999987 47898874

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.11  E-value=1.2e-10  Score=127.77  Aligned_cols=81  Identities=20%  Similarity=0.219  Sum_probs=67.6

Q ss_pred             HHHHHHHhCCCCcEEEEeCChhhhhhcCCCc----ccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          276 KSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       276 ~El~elL~~~e~avLIDVRsp~Ef~~GHIPG----Av~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      .+..+.+  .++++|||||+++||+.+||||    |+        |+|+.++...+..+                     
T Consensus       398 ~~~~~~~--~~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~~l---------------------  446 (482)
T PRK01269        398 VETVSEL--PPDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFGDL---------------------  446 (482)
T ss_pred             hHHHHhc--CCCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHhhc---------------------
Confidence            3344443  3678999999999999999999    88        99998887654332                     


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcc
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQG  388 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdG  388 (558)
                       +++++||+||++|.||..++..|+++||+||+++.+
T Consensus       447 -~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~  482 (482)
T PRK01269        447 -DQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYRP  482 (482)
T ss_pred             -CCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence             367899999999999999999999999999998753

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=98.94  E-value=9.5e-10  Score=113.00  Aligned_cols=99  Identities=19%  Similarity=0.248  Sum_probs=82.9

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      -|+|+++.+++ .+++.++||+|..-||+-||..||+        +.+...|++........               +. 
T Consensus       114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v~~~---------------~~-  168 (308)
T COG1054         114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWVEEN---------------LD-  168 (308)
T ss_pred             ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHHHHH---------------HH-
Confidence            48999999999 4788999999999999999999999        88877777655433211               00 


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      .-++++|+.||..|.|-..+...|...||++||.|+||+-.|-+
T Consensus       169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e  212 (308)
T COG1054         169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE  212 (308)
T ss_pred             hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence            11578999999999999999999999999999999999988855

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.79  E-value=9.2e-09  Score=105.25  Aligned_cols=119  Identities=19%  Similarity=0.252  Sum_probs=85.1

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeC---------ChhhhhhcCCCcccccccccccCCCchhhhhh---HHhhhcCCccchh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDD  339 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVR---------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~---l~eL~~~~~~L~~  339 (558)
                      .++++.+.+.+. +++.+|||.-         ...||..-|||||.        ++.++....+   .+...+..+.   
T Consensus         6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~--------~fdld~~~~~s~~~~~~lp~~e~---   73 (286)
T KOG1529|consen    6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIPGAS--------HFDLDIISYPSSPYRHMLPTAEH---   73 (286)
T ss_pred             ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCCCce--------eeeccccccCCCcccccCccHHH---
Confidence            478888888884 4679999983         35678888999998        4444433211   1111111011   


Q ss_pred             hHHHHHHhhhhccCCCcEEEEEeC--CCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          340 TLTAAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       340 ~l~aa~i~~Lkgl~kdk~VVVyC~--sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                       ++ .. -...+++++..+|||++  .|+ .|.+++|+++..||++|+.|+||+..|+++|+|+...+.
T Consensus        74 -Fa-~y-~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~  139 (286)
T KOG1529|consen   74 -FA-EY-ASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV  139 (286)
T ss_pred             -HH-HH-HHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence             11 11 11235678899999999  787 789999999999999999999999999999999988664

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=1.5e-07  Score=98.07  Aligned_cols=104  Identities=25%  Similarity=0.341  Sum_probs=75.3

Q ss_pred             CcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHH
Q 008635          270 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA  344 (558)
Q Consensus       270 ~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa  344 (558)
                      ...|+++.+..++++.     ...+|||+|-|-||..|||+||+        |++..+..+... +.++..         
T Consensus       155 ~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f-~~~~~~---------  216 (325)
T KOG3772|consen  155 LKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF-LLKDGV---------  216 (325)
T ss_pred             ccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh-cccccc---------
Confidence            3579999999999641     23679999999999999999999        998665443321 111100         


Q ss_pred             HHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHH------------cCCCcEEEEcccHHHHHHc
Q 008635          345 VIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRK------------LGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       345 ~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~------------~GfknVy~LdGG~~aWkaA  396 (558)
                           +.-.+...+||||-... |+..+|+.|+.            +-|..+|+|+|||..|-..
T Consensus       217 -----~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  217 -----PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             -----ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence                 00013457899998654 99999999983            3456899999999999764

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.07  E-value=4e-06  Score=86.16  Aligned_cols=94  Identities=21%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCC
Q 008635          286 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD  354 (558)
Q Consensus       286 e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~k  354 (558)
                      .+...+|.|...+|.           .|||||++        |+|++++-..-..+.+ ..++...+      .-+++..
T Consensus       171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~k~-~edl~~~f------~~~~l~~  235 (286)
T KOG1529|consen  171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFIKP-AEDLKHLF------AQKGLKL  235 (286)
T ss_pred             ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccccCC-HHHHHHHH------HhcCccc
Confidence            468899999988884           47999999        9998877543222211 12222222      1245556


Q ss_pred             CcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          355 RSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       355 dk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      ++|+|+-|..|..+...+-.|.+.| .+|.+++|+|..|..
T Consensus       236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~  275 (286)
T KOG1529|consen  236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL  275 (286)
T ss_pred             CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence            8999999999999999999999999 789999999999975

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.93  E-value=3.4e-06  Score=90.53  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=86.3

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ....|.+|||++|+|++| ....+++.....+..   ...+++|++|+.+++.|+++          ........++..|
T Consensus       299 ~~~~A~~qg~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~----------~~~~~~~~~~~~~  367 (444)
T PRK09564        299 LATTANKLGRMVGENLAG-RHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDY----------KTVFIKDKNHTNY  367 (444)
T ss_pred             chHHHHHHHHHHHHHhcC-CCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCe----------EEEEEecCCCCCc
Confidence            566899999999999995 666788887776554   67999999999999999876          3333334567778


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~  255 (558)
                      ++|.....+               |+|++ .+|++||+|+ +|......+++      .++.++..+.+.
T Consensus       368 ~~~~~~~~~---------------klv~~~~~~~ilG~~~-~g~~~~~~~i~------~~~~~i~~~~~~  415 (444)
T PRK09564        368 YPGQEDLYV---------------KLIYEADTKVILGGQI-IGKKGAVLRID------ALAVAIYAKLTT  415 (444)
T ss_pred             CCCCceEEE---------------EEEEECCCCeEEeEEE-EcCccHHHHHH------HHHHHHHCCCCH
Confidence            899999999               99996 4999999999 77654555666      555555555443

>PRK07846 mycothione reductase; Reviewed

Probab=97.85  E-value=4.2e-06  Score=91.10  Aligned_cols=127  Identities=10%  Similarity=-0.001  Sum_probs=93.6

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc--ccccCcccccccc-ccccccchhhHHhhhcccchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      .|+-++|+..-     .....-|++|||++++|++++..  ....+.+.+.+.. ...+++|++|+.+++.|++|     
T Consensus       294 ~IyA~GD~~~~-----~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~-----  363 (451)
T PRK07846        294 GVFALGDVSSP-----YQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDI-----  363 (451)
T ss_pred             CEEEEeecCCC-----ccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCE-----
Confidence            45666666531     12356799999999999996422  2244567777665 78999999999999999876     


Q ss_pred             ccccceeeeecCCCceeec-CCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          169 TIVALEESMTNGASFVVYY-YGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~~~y~-pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                           .+....-.++..|+ ++.....+               |+|++. +|++||+|+ +|.+ ...+|+      .++
T Consensus       364 -----~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~  415 (451)
T PRK07846        364 -----TVKVQNYGDVAYGWAMEDTTGFV---------------KLIADRDTGRLLGAHI-IGPQ-ASTLIQ------PLI  415 (451)
T ss_pred             -----EEEEEecCcchhhhhCCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence                 55555555655554 78888888               999964 999999999 8854 478888      777


Q ss_pred             HHHHHhhHHH
Q 008635          247 FVVFLGTSAT  256 (558)
Q Consensus       247 ~ai~~g~~~~  256 (558)
                      .++..+.+..
T Consensus       416 ~ai~~~~t~~  425 (451)
T PRK07846        416 QAMSFGLDAR  425 (451)
T ss_pred             HHHHcCCCHH
Confidence            7777776654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.85  E-value=3.7e-06  Score=91.08  Aligned_cols=127  Identities=8%  Similarity=0.003  Sum_probs=90.8

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Ccccccccc-ccccccchhhHHhhhcc-cchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATV-AAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~-~~~~~l~~  168 (558)
                      .|+-++|+...     ...+..|++|||++++|++|+....++ +++.+.+.. ...+++|++|+.+++.+ +++.+.  
T Consensus       295 ~IyA~GD~~~~-----~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~--  367 (446)
T TIGR01424       295 SIYAVGDVTDR-----INLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVY--  367 (446)
T ss_pred             CEEEeeccCCC-----ccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEE--
Confidence            45666676521     235668999999999999965444455 678888877 47999999999999984 665111  


Q ss_pred             ccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                           ...+  ...+..|++|.....+               |+|+++ +|++||+|+ +|.+ ...+|+      .+++
T Consensus       368 -----~~~~--~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~  417 (446)
T TIGR01424       368 -----RAGF--RPMKNTFSGRQEKTLM---------------KLVVDEKDDKVLGAHM-VGPD-AAEIIQ------GIAI  417 (446)
T ss_pred             -----EEec--CchHhHhhcCCCceEE---------------EEEEeCCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence                 1111  2345567888888888               999965 999999999 8854 677777      6666


Q ss_pred             HHHHhhHH
Q 008635          248 VVFLGTSA  255 (558)
Q Consensus       248 ai~~g~~~  255 (558)
                      ++..+.+.
T Consensus       418 ai~~~~t~  425 (446)
T TIGR01424       418 ALKMGATK  425 (446)
T ss_pred             HHHcCCCH
Confidence            66655554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06370 mercuric reductase; Validated

Probab=97.83  E-value=4.6e-06  Score=90.58  Aligned_cols=126  Identities=6%  Similarity=-0.017  Sum_probs=87.8

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++|+.. .    .....-|.+|||++|+|++++....++...-..+.-  ...+++|++|+.+++.|++|      
T Consensus       303 ~IyAiGD~~~-~----~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~------  371 (463)
T PRK06370        303 GIYAAGDCNG-R----GAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRV------  371 (463)
T ss_pred             CEEEeeecCC-C----cccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCe------
Confidence            3555666542 1    123568999999999999965455566544333333  56899999999999999876      


Q ss_pred             cccceeeeecCCCcee-ecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          170 IVALEESMTNGASFVV-YYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       170 ~~~~~~~~~~~~~~~~-y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                          ++....-.++.. |++|.....+               |+|++ .+|++||+|+ +|.+ ...+|+      .++.
T Consensus       372 ----~~~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~  424 (463)
T PRK06370        372 ----LVGTRPMTRVGRAVEKGETQGFM---------------KVVVDADTDRILGATI-LGVH-GDEMIH------EILD  424 (463)
T ss_pred             ----EEEEEecCcchhHHhcCCCCEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence                444443334333 4488888888               99996 4999999999 8865 466777      6666


Q ss_pred             HHHHhhHH
Q 008635          248 VVFLGTSA  255 (558)
Q Consensus       248 ai~~g~~~  255 (558)
                      ++..+.+.
T Consensus       425 ai~~~~t~  432 (463)
T PRK06370        425 AMYAGAPY  432 (463)
T ss_pred             HHHCCCCH
Confidence            66665554

>PRK14727 putative mercuric reductase; Provisional

Probab=97.77  E-value=7.1e-06  Score=89.80  Aligned_cols=126  Identities=10%  Similarity=-0.030  Sum_probs=94.3

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++|+...     ...+.-|..|||.+|+|++| ....+++.....+.-  ...+++|++|+.+++.|++|      
T Consensus       315 ~IyA~GD~~~~-----~~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~------  382 (479)
T PRK14727        315 DIYAAGDCSDL-----PQFVYVAAAAGSRAGINMTG-GNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIET------  382 (479)
T ss_pred             CEEEeeecCCc-----chhhhHHHHHHHHHHHHHcC-CCcccccccCCcEEEecCceeeeeCCHHHHHHcCCce------
Confidence            46666776531     23456788899999999994 667788777766554  67999999999999999876      


Q ss_pred             cccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          170 IVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       170 ~~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                          .+......++..|+++ .....+               |+|++ .+|++||+|+ +|.+ ...+|+      .++.
T Consensus       383 ----~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~  435 (479)
T PRK14727        383 ----ISRVLTMENVPRALANFETDGFI---------------KLVAEEGTRKLIGAQI-LAHE-GGELIQ------SAAL  435 (479)
T ss_pred             ----EEEEEEcccCchhhhcCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence                5555666777777877 456777               99996 5999999999 8865 477788      7666


Q ss_pred             HHHHhhHHH
Q 008635          248 VVFLGTSAT  256 (558)
Q Consensus       248 ai~~g~~~~  256 (558)
                      ++..+.+..
T Consensus       436 ai~~~~t~~  444 (479)
T PRK14727        436 AIHNRMTVE  444 (479)
T ss_pred             HHHcCCCHH
Confidence            666665543

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.71  E-value=1.3e-05  Score=85.91  Aligned_cols=112  Identities=19%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ....|.+|||++|+|+.| ....+++........   ...++.|++|+.+++.|++|          +.......++..+
T Consensus       286 ~~~~A~~~g~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~----------~~~~~~~~~~~~~  354 (427)
T TIGR03385       286 LAWGANKMGRIAGENIAG-NDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDY----------KTVFVKAKTHANY  354 (427)
T ss_pred             chHHHHHHHHHHHHHhcC-CCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCe----------EEEEEecCCCCCc
Confidence            567899999999999995 567787766554444   77999999999999999876          4444555567777


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTS  254 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~  254 (558)
                      ++|.....+               |+|+++ +|++||+|+ +|.++....+.      .++.++..+.+
T Consensus       355 ~~~~~~g~~---------------kli~~~~~~~ilG~~~-~g~~~a~e~i~------~~~~ai~~~~t  401 (427)
T TIGR03385       355 YPGNSPLHL---------------KLIYEKDTRRILGAQA-VGKEGADKRID------VLAAAIMAGLT  401 (427)
T ss_pred             CCCCceEEE---------------EEEEECCCCeEEEEEE-EccccHHHHHH------HHHHHHHCCCC
Confidence            889888899               999965 899999999 77765555566      55544444443

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.66  E-value=1.7e-05  Score=85.87  Aligned_cols=113  Identities=13%  Similarity=0.114  Sum_probs=83.2

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ....|.+||+.+++|++|.....+.+........   ...+++|++|+.+++.++            +.......++..|
T Consensus       294 la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~------------~~~~~~~~~~~~~  361 (438)
T PRK13512        294 LAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDY------------KMVEVTQGAHANY  361 (438)
T ss_pred             cchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCc------------EEEEEecCCcCCC
Confidence            3456899999999999953334455666655544   679999999999987643            2333344556677


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT  256 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~  256 (558)
                      ++|.....+               |+++++ +|++||+|+ +|.++....|.      .++.++..+.+..
T Consensus       362 ~~~~~~g~~---------------klv~d~~~~~ilGa~~-~g~~~a~e~i~------~~~~ai~~~~t~~  410 (438)
T PRK13512        362 YPGNSPLHL---------------RVYYDTSNRKILRAAA-VGKEGADKRID------VLSMAMMNQLTVD  410 (438)
T ss_pred             cCCCceEEE---------------EEEEECCCCeEEEEEE-EccccHHHHHH------HHHHHHHcCCcHH
Confidence            789888888               999965 899999999 88776677777      7666666666553

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.60  E-value=1.8e-05  Score=86.52  Aligned_cols=126  Identities=11%  Similarity=-0.015  Sum_probs=90.7

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++|+...     ...+..|.+|||.+++|++| ....++......+.-  ...+++|++|+.+++.|++|      
T Consensus       306 ~VyAiGDv~~~-----~~la~~A~~eG~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~------  373 (471)
T PRK06467        306 HIFAIGDIVGQ-----PMLAHKGVHEGHVAAEVIAG-KKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEY------  373 (471)
T ss_pred             CEEEehhhcCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCe------
Confidence            36667776531     12467899999999999995 666777766666554  66899999999999999876      


Q ss_pred             cccceeeeecCCC-ceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          170 IVALEESMTNGAS-FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       170 ~~~~~~~~~~~~~-~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                          ......-.+ .-.+++|.....+               |+|+++ +|++||+|+ +|-+. ..+|+      .++.
T Consensus       374 ----~~~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~t~~ilG~~~-vg~~a-~e~i~------~~a~  426 (471)
T PRK06467        374 ----ETATFPWAASGRAIASDCADGMT---------------KLIFDKETHRVLGGAI-VGTNA-GELLG------EIGL  426 (471)
T ss_pred             ----EEEEEecCcchhhhhCCCCceEE---------------EEEEECCCCeEEEEEE-ECCCH-HHHHH------HHHH
Confidence                333333222 1223588888888               999965 899999999 88654 55777      7776


Q ss_pred             HHHHhhHHH
Q 008635          248 VVFLGTSAT  256 (558)
Q Consensus       248 ai~~g~~~~  256 (558)
                      ++..+.+..
T Consensus       427 ai~~~~t~~  435 (471)
T PRK06467        427 AIEMGCDAE  435 (471)
T ss_pred             HHHCCCCHH
Confidence            766666543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.57  E-value=2.1e-05  Score=85.55  Aligned_cols=126  Identities=8%  Similarity=-0.024  Sum_probs=84.5

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      .|+-++|+...     ...+..|.+|||.+|+|++|+....+..........   ...+++|++|+.+++.|++|     
T Consensus       305 ~IyAiGD~~~~-----~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~-----  374 (466)
T PRK07818        305 HIYAIGDVTAK-----LQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDV-----  374 (466)
T ss_pred             CEEEEeecCCC-----cccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcE-----
Confidence            34556665421     235778999999999999953222221222222222   67999999999999999876     


Q ss_pred             ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                           .....  ...+++.|+ |.....+               |+++++ +|++||+|+ +|. ....+|+      .+
T Consensus       375 -----~~~~~~~~~~~~~~~~-~~~~g~~---------------Klv~~~~~~~ilG~~~-vg~-~a~e~i~------~~  425 (466)
T PRK07818        375 -----KVAKFPFTANGKAHGL-GDPTGFV---------------KLVADAKYGELLGGHL-IGP-DVSELLP------EL  425 (466)
T ss_pred             -----EEEEEECCccchhhhc-CCCCeEE---------------EEEEECCCCeEEEEEE-ECC-CHHHHHH------HH
Confidence                 22222  134444444 6777888               999965 999999999 884 6788888      77


Q ss_pred             HHHHHHhhHHH
Q 008635          246 PFVVFLGTSAT  256 (558)
Q Consensus       246 a~ai~~g~~~~  256 (558)
                      +.++..+.++.
T Consensus       426 ~~ai~~~~t~~  436 (466)
T PRK07818        426 TLAQKWDLTAE  436 (466)
T ss_pred             HHHHHcCCCHH
Confidence            77766666543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.56  E-value=2.2e-05  Score=85.13  Aligned_cols=124  Identities=14%  Similarity=0.065  Sum_probs=89.8

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      .|+-.+++..     ....+..|.+|||.+|+|++| ....++ .......+   ...+++|++|+.+++.|++|     
T Consensus       303 ~VyAiGD~~~-----~~~~~~~A~~~g~~aa~ni~~-~~~~~~-~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~-----  370 (462)
T PRK06416        303 NIYAIGDIVG-----GPMLAHKASAEGIIAAEAIAG-NPHPID-YRGIPAVTYTHPEVASVGLTEAKAKEEGFDV-----  370 (462)
T ss_pred             CEEEeeecCC-----CcchHHHHHHHHHHHHHHHcC-CCCCCC-CCCCCeEEECCCceEEEeCCHHHHHhcCCCe-----
Confidence            4556666652     123577899999999999995 555565 44554444   67899999999999999876     


Q ss_pred             ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                           ++...  ...+++.| ++.....+               |+|++ .+|++||+|+ +|. +...+++      .+
T Consensus       371 -----~~~~~~~~~~~~~~~-~~~~~g~~---------------kli~~~~~~~ilG~~~-~g~-~a~e~i~------~~  421 (462)
T PRK06416        371 -----KVVKFPFAGNGKALA-LGETDGFV---------------KLIFDKKDGEVLGAHM-VGA-RASELIQ------EA  421 (462)
T ss_pred             -----EEEEEecCcChHhHh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HH
Confidence                 33322  23445454 57778888               99996 5999999999 885 5888888      77


Q ss_pred             HHHHHHhhHHH
Q 008635          246 PFVVFLGTSAT  256 (558)
Q Consensus       246 a~ai~~g~~~~  256 (558)
                      +.++..+.++.
T Consensus       422 ~~ai~~~~t~~  432 (462)
T PRK06416        422 QLAINWEATPE  432 (462)
T ss_pred             HHHHHCCCCHH
Confidence            77777666653

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.56  E-value=2.9e-05  Score=84.00  Aligned_cols=126  Identities=10%  Similarity=-0.032  Sum_probs=87.7

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      .|+-++|+..     ....+..|.+||+.+|.|++|+......+.+.+.+.. ...+++|++|+.+++.|++|       
T Consensus       304 ~IyAiGD~~~-----~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~-------  371 (461)
T PRK05249        304 HIYAVGDVIG-----FPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPY-------  371 (461)
T ss_pred             CEEEeeecCC-----CcccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCe-------
Confidence            4566666542     1124678999999999999953232344566666655 56899999999999999876       


Q ss_pred             ccceeee--ecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          171 VALEESM--TNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       171 ~~~~~~~--~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                         +...  .....++. ++|.....+               |+|+++ +|++||+|+ +| .....+|+      .+++
T Consensus       372 ---~~~~~~~~~~~~~~-~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g-~~a~e~i~------~~~~  424 (461)
T PRK05249        372 ---EVGRARFKELARAQ-IAGDNVGML---------------KILFHRETLEILGVHC-FG-ERATEIIH------IGQA  424 (461)
T ss_pred             ---EEEEEcccccccee-ecCCCCcEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------HHHH
Confidence               3322  22233444 458778888               999964 899999999 88 45666788      7776


Q ss_pred             HHHHhhHHH
Q 008635          248 VVFLGTSAT  256 (558)
Q Consensus       248 ai~~g~~~~  256 (558)
                      ++..+.++.
T Consensus       425 ai~~~~t~~  433 (461)
T PRK05249        425 IMEQKGTIE  433 (461)
T ss_pred             HHHCCCCHH
Confidence            766666544

>PRK13748 putative mercuric reductase; Provisional

Probab=97.49  E-value=3.4e-05  Score=85.69  Aligned_cols=124  Identities=10%  Similarity=0.002  Sum_probs=89.8

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++|+...     ...+.-|..|||++++|++| ....+++.....+.-  ...+++|++|+.+++.|++|       
T Consensus       398 IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~-------  464 (561)
T PRK13748        398 IYAAGDCTDQ-----PQFVYVAAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIET-------  464 (561)
T ss_pred             EEEeeecCCC-----ccchhHHHHHHHHHHHHHcC-CCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCe-------
Confidence            5556666421     23456789999999999995 566788777665554  67999999999999999876       


Q ss_pred             ccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHH
Q 008635          171 VALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFV  248 (558)
Q Consensus       171 ~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~a  248 (558)
                         ......-.++..|+++ .....+               |+||++ +|++||+|+ +|.+ ...+|+      .++.+
T Consensus       465 ---~~~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~a  518 (561)
T PRK13748        465 ---DSRTLTLDNVPRALANFDTRGFI---------------KLVIEEGSGRLIGVQA-VAPE-AGELIQ------TAALA  518 (561)
T ss_pred             ---EEEEEecccCchhhhcCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHH
Confidence               4444555677777776 456777               899964 999999999 7754 366677      66656


Q ss_pred             HHHhhHH
Q 008635          249 VFLGTSA  255 (558)
Q Consensus       249 i~~g~~~  255 (558)
                      +..+.++
T Consensus       519 i~~~~t~  525 (561)
T PRK13748        519 IRNRMTV  525 (561)
T ss_pred             HHcCCCH
Confidence            5555554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.47  E-value=3.5e-05  Score=84.06  Aligned_cols=125  Identities=12%  Similarity=0.041  Sum_probs=88.1

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-.+++...     ...+..|.+||+.++++++|+....+++..-..+.-  ...+++|++|+.+++.|++|       
T Consensus       313 IyAiGD~~~~-----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~-------  380 (472)
T PRK05976        313 IYAIGDVIGE-----PQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDV-------  380 (472)
T ss_pred             EEEeeecCCC-----cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCE-------
Confidence            5555555421     124678999999999999954336676654222222  66899999999999999876       


Q ss_pred             ccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          171 VALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       171 ~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                         .....  ...+++.| ++.....+               |+|+++ +|++||+|+ +|. +...+|+      ++++
T Consensus       381 ---~~~~~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~-~a~e~i~------~~~~  433 (472)
T PRK05976        381 ---KVGKFPFAANGKALT-YGESDGFV---------------KVVADRDTHDILGVQA-VGP-HVTELIS------EFAL  433 (472)
T ss_pred             ---EEEEEECCcchhhhh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HHHH
Confidence               33222  23455555 47778888               999965 899999999 884 5778888      7777


Q ss_pred             HHHHhhHHH
Q 008635          248 VVFLGTSAT  256 (558)
Q Consensus       248 ai~~g~~~~  256 (558)
                      ++..+.++.
T Consensus       434 ai~~~~t~~  442 (472)
T PRK05976        434 ALELGARLW  442 (472)
T ss_pred             HHHCCCCHH
Confidence            777776654

>TIGR02053 MerA mercuric reductase

Probab=97.47  E-value=3.4e-05  Score=83.75  Aligned_cols=125  Identities=14%  Similarity=0.031  Sum_probs=87.5

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++|+..-     ......|.+||+.+|+|++++....++...-..+..  ...+++|++|+.+++.|++|      
T Consensus       298 ~VyAiGD~~~~-----~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~------  366 (463)
T TIGR02053       298 GIYAAGDVTGG-----LQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIEC------  366 (463)
T ss_pred             CEEEeeecCCC-----cccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCe------
Confidence            46666666542     235678999999999999953355666655444433  77999999999999999876      


Q ss_pred             cccceeeeec--CCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          170 IVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       170 ~~~~~~~~~~--~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                          ......  ..+++.| +|..+..+               |+|++ .+|++||+|+ +|.+ ...+|+      .++
T Consensus       367 ----~~~~~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~  418 (463)
T TIGR02053       367 ----DCRTLPLTNVPRARI-NRDTRGFI---------------KLVAEPGTGKVLGVQV-VAPE-AAEVIN------EAA  418 (463)
T ss_pred             ----EEEEEecccchHHHh-cCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence                333222  2223333 47778888               99996 5999999999 7866 567777      666


Q ss_pred             HHHHHhhHH
Q 008635          247 FVVFLGTSA  255 (558)
Q Consensus       247 ~ai~~g~~~  255 (558)
                      .++..+.+.
T Consensus       419 ~ai~~~~t~  427 (463)
T TIGR02053       419 LAIRAGMTV  427 (463)
T ss_pred             HHHHCCCCH
Confidence            666655553

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.42  E-value=4.4e-05  Score=87.37  Aligned_cols=133  Identities=13%  Similarity=-0.014  Sum_probs=82.8

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC---------cccccccc-----ccccccchhhHHhh
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ---------TGGSAGSK-----LTNFSTDLKEASSK  157 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~---------~~~~a~~~-----~t~~stgl~e~~~~  157 (558)
                      .|+-++|+.-    . .-.+..|++||+.+++||+|+....+.+         .....+-.     ...|++||+|+.++
T Consensus       464 ~IYAiGDv~g----~-~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~  538 (659)
T PTZ00153        464 NIFCIGDANG----K-QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAK  538 (659)
T ss_pred             CEEEEEecCC----C-ccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHH
Confidence            3666667641    1 2356789999999999999532221211         11122222     45889999999999


Q ss_pred             hcccc--hhhhhcccccce----------eeeecCCCceeecCCC------cccccChhhhhhhhhhhhccceeecc-ch
Q 008635          158 ATVAA--VDVLRNTIVALE----------ESMTNGASFVVYYYGT------TKESLPPEIRDALNLYEDRAVKLWRP-VG  218 (558)
Q Consensus       158 ~~~~~--~~~l~~~~~~~~----------~~~~~~~~~~~y~pGa------~~~~l~p~~k~~~~~~ee~~k~i~~~-~G  218 (558)
                      +.|+.  +.+-+   ..|+          .++-+..-|..||||.      ....+               |+|+++ +|
T Consensus       539 ~~g~~~~v~v~~---~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~v---------------Kli~d~~t~  600 (659)
T PTZ00153        539 ELYPPDNVGVEI---SFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMV---------------KIVYLKDTK  600 (659)
T ss_pred             hcCCCcceEEEE---EEecccchhhhccccccccccccccccccccccccCCceEE---------------EEEEECCCC
Confidence            98853  21111   1111          1111222366899998      55667               999965 99


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635          219 SALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       219 ~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~  255 (558)
                      ++||+|+ +|.+..+ .|.      .++.++..+.++
T Consensus       601 rILGa~i-vG~~A~e-lI~------~~a~aI~~~~tv  629 (659)
T PTZ00153        601 EILGMFI-VGSYASI-LIH------EGVLAINLKLSV  629 (659)
T ss_pred             eEEEEEE-ECCCHHH-HHH------HHHHHHHCCCCH
Confidence            9999999 7877654 677      666666655554

>TIGR03452 mycothione_red mycothione reductase

Probab=97.41  E-value=4.5e-05  Score=83.07  Aligned_cols=125  Identities=10%  Similarity=-0.008  Sum_probs=86.6

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc-cccc-Ccccccccc-ccccccchhhHHhhhcccchhhhhcc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      |+-++|+...     ......|++|||++|+|++|+.. ..++ +.+.+++.- ...+++|++|+.+++.|++|      
T Consensus       298 IyA~GD~~~~-----~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~------  366 (452)
T TIGR03452       298 VWALGDVSSP-----YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDI------  366 (452)
T ss_pred             EEEeecccCc-----ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCe------
Confidence            5666666531     12345799999999999995322 1233 566666653 78999999999999999876      


Q ss_pred             cccceeeeecCCCceee--cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          170 IVALEESMTNGASFVVY--YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       170 ~~~~~~~~~~~~~~~~y--~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                          +.. ..+.++..|  +.+.....+               |+|+++ +|++||+|+ +|.+. ..+|+      .++
T Consensus       367 ----~~~-~~~~~~~~~~~~~~~~~g~~---------------Klv~d~~t~~ilG~~~-vg~~a-~e~i~------~~~  418 (452)
T TIGR03452       367 ----TVK-IQNYGDVAYGWAMEDTTGFC---------------KLIADRDTGKLLGAHI-IGPQA-SSLIQ------PLI  418 (452)
T ss_pred             ----EEE-EecCCchhhHhhcCCCCeEE---------------EEEEECCCCEEEEEEE-ECCCH-HHHHH------HHH
Confidence                332 223333333  347777778               999964 999999999 88654 67788      766


Q ss_pred             HHHHHhhHHH
Q 008635          247 FVVFLGTSAT  256 (558)
Q Consensus       247 ~ai~~g~~~~  256 (558)
                      .++..+.+..
T Consensus       419 ~ai~~~~t~~  428 (452)
T TIGR03452       419 TAMAFGLDAR  428 (452)
T ss_pred             HHHHcCCCHH
Confidence            6766666653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.40  E-value=4.9e-05  Score=82.01  Aligned_cols=126  Identities=11%  Similarity=0.040  Sum_probs=85.8

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      .|+-++|+... +    .....|..|||.+++|++|+......+........   ...+++|++|+.+++.|++|     
T Consensus       286 ~IyA~GD~~~~-~----~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~-----  355 (441)
T PRK08010        286 NIWAMGDVTGG-L----QFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADI-----  355 (441)
T ss_pred             CEEEeeecCCC-c----cchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCe-----
Confidence            35666666431 1    45567889999999999953233333443333333   67999999999999999876     


Q ss_pred             ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                           .....  ....++.|+++. ...+               |+|++ .+|++||+|+ +|.+ ...+|+      .+
T Consensus       356 -----~~~~~~~~~~~~~~~~~~~-~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~  406 (441)
T PRK08010        356 -----QVVTLPVAAIPRARVMNDT-RGVL---------------KAIVDNKTQRILGASL-LCVD-SHEMIN------IV  406 (441)
T ss_pred             -----EEEEEecCcChhhhhcCCC-ceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HH
Confidence                 33332  234445555554 4467               99996 4999999999 8854 588888      77


Q ss_pred             HHHHHHhhHHH
Q 008635          246 PFVVFLGTSAT  256 (558)
Q Consensus       246 a~ai~~g~~~~  256 (558)
                      +.++..+.+..
T Consensus       407 ~~ai~~~~t~~  417 (441)
T PRK08010        407 KMVMDAGLPYS  417 (441)
T ss_pred             HHHHHCCCCHH
Confidence            77776666643

>PRK14694 putative mercuric reductase; Provisional

Probab=97.35  E-value=5.6e-05  Score=82.43  Aligned_cols=125  Identities=14%  Similarity=0.007  Sum_probs=86.9

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC--ccccccccccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ--TGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~--~~~~a~~~~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++|+..     ....+..|..|||.+|.|++| ....++.  .-+.-......+++|++|+.+++.|++|       
T Consensus       305 IyA~GD~~~-----~~~~~~~A~~~G~~aa~~i~~-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~-------  371 (468)
T PRK14694        305 IYAAGDCTD-----QPQFVYVAAAGGSRAAINMTG-GDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDT-------  371 (468)
T ss_pred             EEEEeecCC-----CcccHHHHHHHHHHHHHHhcC-CCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCce-------
Confidence            555566642     123566789999999999995 4433322  2222233378999999999999999876       


Q ss_pred             ccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHH
Q 008635          171 VALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFV  248 (558)
Q Consensus       171 ~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~a  248 (558)
                         ......-.++..|+++ .....+               |+|+++ +|++||+|+ +|.+ ...+|+      .++.+
T Consensus       372 ---~~~~~~~~~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g~~-a~e~i~------~~~~a  425 (468)
T PRK14694        372 ---DSRTLDLENVPRALVNFDTGGFI---------------KMVAERGSGRLLGVQV-VAGE-AGELIQ------TAVMA  425 (468)
T ss_pred             ---EEEEEecccchhhhhcCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHH
Confidence               4555555667778876 445677               999964 999999999 7875 466677      66666


Q ss_pred             HHHhhHHH
Q 008635          249 VFLGTSAT  256 (558)
Q Consensus       249 i~~g~~~~  256 (558)
                      +..+.++.
T Consensus       426 i~~~~t~~  433 (468)
T PRK14694        426 LRARMTVN  433 (468)
T ss_pred             HHCCCCHH
Confidence            66666543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.33  E-value=7.1e-05  Score=81.76  Aligned_cols=125  Identities=11%  Similarity=0.012  Sum_probs=85.6

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-ccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++|+..     ....+..|.+||+.+++|++|..... ..+.+.+.+.. ...+++|++|+.+++.|++|       
T Consensus       307 IyA~GD~~~-----~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~-------  374 (466)
T PRK07845        307 IYAAGDCTG-----VLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPA-------  374 (466)
T ss_pred             EEEEeeccC-----CccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCce-------
Confidence            555566642     12357889999999999999532121 22445555553 77999999999999999876       


Q ss_pred             ccceeeeecC--CCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          171 VALEESMTNG--ASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       171 ~~~~~~~~~~--~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                         +.....-  ..++ +++|.....+               |+|+++ +|++||+|+ +|.+ ...+|+      .++.
T Consensus       375 ---~~~~~~~~~~~~~-~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~  427 (466)
T PRK07845        375 ---RTVMLPLATNPRA-KMSGLRDGFV---------------KLFCRPGTGVVIGGVV-VAPR-ASELIL------PIAL  427 (466)
T ss_pred             ---EEEEEecccCchh-hhcCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence               3333222  2233 3588888888               999965 999999999 7854 456777      7666


Q ss_pred             HHHHhhHHH
Q 008635          248 VVFLGTSAT  256 (558)
Q Consensus       248 ai~~g~~~~  256 (558)
                      ++..+.++.
T Consensus       428 ai~~~~t~~  436 (466)
T PRK07845        428 AVQNRLTVD  436 (466)
T ss_pred             HHHcCCCHH
Confidence            666665543

>PRK06116 glutathione reductase; Validated

Probab=97.30  E-value=6e-05  Score=81.54  Aligned_cols=126  Identities=4%  Similarity=-0.081  Sum_probs=85.2

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc-cc-ccCcccccccc-ccccccchhhHHhhhcccc--hhhh
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAA--VDVL  166 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~-~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~--~~~l  166 (558)
                      .|+-++++...     -..+..|.+|||.+|+|++|+.. .. .-..+.+.+.. ...+++||+|+.+++.|++  +   
T Consensus       297 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~---  368 (450)
T PRK06116        297 GIYAVGDVTGR-----VELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNV---  368 (450)
T ss_pred             CEEEEeecCCC-----cCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcE---
Confidence            45666665421     12467899999999999996332 11 12567777776 4899999999999999875  3   


Q ss_pred             hcccccceeeee-cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 008635          167 RNTIVALEESMT-NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPI  244 (558)
Q Consensus       167 ~~~~~~~~~~~~-~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PV  244 (558)
                             ..... ....+..++.+..+..+               |+|+++ +|++||+|+ +| .+...+|+      .
T Consensus       369 -------~~~~~~~~~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g-~~a~e~i~------~  418 (450)
T PRK06116        369 -------KVYRSSFTPMYTALTGHRQPCLM---------------KLVVVGKEEKVVGLHG-IG-FGADEMIQ------G  418 (450)
T ss_pred             -------EEEEEecchhHHHHhcCCCceEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------H
Confidence                   11111 11222334456777888               999965 999999999 88 55777788      6


Q ss_pred             hHHHHHHhhHH
Q 008635          245 VPFVVFLGTSA  255 (558)
Q Consensus       245 La~ai~~g~~~  255 (558)
                      ++.++..+.+.
T Consensus       419 ~~~ai~~~~t~  429 (450)
T PRK06116        419 FAVAIKMGATK  429 (450)
T ss_pred             HHHHHHCCCCH
Confidence            66666555554

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.30  E-value=6.8e-05  Score=81.17  Aligned_cols=126  Identities=12%  Similarity=0.067  Sum_probs=86.4

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Cccccccc-cccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++|+..-     .-.+..|.+|||.+|+|+++.....++ ..+.+.+. ....+++|++|+.+++.|++|      
T Consensus       300 ~IyA~GD~~~~-----~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~------  368 (460)
T PRK06292        300 GIYAAGDVNGK-----PPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDY------  368 (460)
T ss_pred             CEEEEEecCCC-----ccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCe------
Confidence            35556666421     123578999999999999953233333 22333333 378999999999999999876      


Q ss_pred             cccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          170 IVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       170 ~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                          +....  ...+++.| ++.....+               |+||++ +|++||+|+ +|.+ ...+|+      .++
T Consensus       369 ----~~~~~~~~~~~~~~~-~~~~~g~~---------------klv~d~~~~~ilG~~~-vg~~-a~e~i~------~~~  420 (460)
T PRK06292        369 ----VVGEVPFEAQGRARV-MGKNDGFV---------------KVYADKKTGRLLGAHI-IGPD-AEHLIH------LLA  420 (460)
T ss_pred             ----EEEEEecccchHHHh-cCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence                33322  23344444 57788888               999965 899999999 8864 777888      777


Q ss_pred             HHHHHhhHHH
Q 008635          247 FVVFLGTSAT  256 (558)
Q Consensus       247 ~ai~~g~~~~  256 (558)
                      .++..+.+..
T Consensus       421 ~ai~~~~t~~  430 (460)
T PRK06292        421 WAMQQGLTVE  430 (460)
T ss_pred             HHHHCCCCHH
Confidence            7777666543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.23  E-value=9.7e-05  Score=81.61  Aligned_cols=127  Identities=14%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             hhhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Ccccccccc-ccccccchhhHHhhhcccchhhhhc
Q 008635           91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      ..|+-++|+...     ...+..|++||+.+++|++|+....++ ..+.+.+.. ...|++||+|+.+++.+..+.+   
T Consensus       319 ~~IyA~GDv~~~-----~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~---  390 (486)
T TIGR01423       319 PNIYAIGDVTDR-----VMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAV---  390 (486)
T ss_pred             CCEEEeeecCCC-----cccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEE---
Confidence            456667777531     124456999999999999964333333 446666666 5799999999999987654411   


Q ss_pred             ccccceeeeecCCCceeecCCCc--ccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          169 TIVALEESMTNGASFVVYYYGTT--KESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~~~y~pGa~--~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                          +...+   .++..++++..  ...+               |+|++ .+|++||+|+ +|. ....+|+      .+
T Consensus       391 ----~~~~~---~~~~~~~~~~~~~~g~~---------------Klv~d~~~~~iLGa~i-vg~-~a~elI~------~~  440 (486)
T TIGR01423       391 ----YESSF---TPLMHNISGSKYKKFVA---------------KIVTNHADGTVLGVHL-LGD-SSPEIIQ------AV  440 (486)
T ss_pred             ----EEEee---CchhhhhccCccCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HH
Confidence                11111   12333456543  3456               88996 4999999999 784 4777787      66


Q ss_pred             HHHHHHhhHH
Q 008635          246 PFVVFLGTSA  255 (558)
Q Consensus       246 a~ai~~g~~~  255 (558)
                      +.++..+.+.
T Consensus       441 ~~ai~~~~t~  450 (486)
T TIGR01423       441 GICLKLNAKI  450 (486)
T ss_pred             HHHHHcCCCH
Confidence            6665555553

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=97.22  E-value=0.00068  Score=70.98  Aligned_cols=100  Identities=18%  Similarity=0.276  Sum_probs=70.6

Q ss_pred             CCcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635          269 YSGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA  343 (558)
Q Consensus       269 ~~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a  343 (558)
                      ...+|+++.++.+++..     -+.+|||+|=+-||..|||-.|+        ||.-.+   .+.-+...          
T Consensus       240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~~~F~h----------  298 (427)
T COG5105         240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLGLLFRH----------  298 (427)
T ss_pred             chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHHHHHHh----------
Confidence            34589999999998531     24679999999999999999999        876321   11111110          


Q ss_pred             HHHhhhhccCCCcEEEEEeCCC-hhHHHHHHHHHHcC------------CCcEEEEcccHHHHHH
Q 008635          344 AVIRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKLG------------VMVTFLVQGGFQSWVK  395 (558)
Q Consensus       344 a~i~~Lkgl~kdk~VVVyC~sG-~RS~~AA~~L~~~G------------fknVy~LdGG~~aWka  395 (558)
                            |-+..-.-+|++|... .|+...|..|+.+-            |+.||+|+|||+.+-.
T Consensus       299 ------kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~  357 (427)
T COG5105         299 ------KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS  357 (427)
T ss_pred             ------ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence                  0012345789999865 49999998886532            4689999999987755

>PLN02507 glutathione reductase

Probab=97.20  E-value=0.00012  Score=80.86  Aligned_cols=124  Identities=6%  Similarity=-0.046  Sum_probs=80.9

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCc--cccccccc-cccccchhhHHhhhc-ccchhhhhc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT--GGSAGSKL-TNFSTDLKEASSKAT-VAAVDVLRN  168 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~--~~~a~~~~-t~~stgl~e~~~~~~-~~~~~~l~~  168 (558)
                      |+-++|+...     ......|++|||.+++|++|+. ..+.+.  +...+... ..+++|++|+.+++. ++++     
T Consensus       333 IyAiGDv~~~-----~~l~~~A~~qg~~aa~ni~g~~-~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~-----  401 (499)
T PLN02507        333 IWAIGDVTNR-----INLTPVALMEGTCFAKTVFGGQ-PTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDI-----  401 (499)
T ss_pred             EEEeeEcCCC-----CccHHHHHHHHHHHHHHHcCCC-CCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCE-----
Confidence            6666776521     1245789999999999999643 322222  23444443 689999999999987 5544     


Q ss_pred             ccccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          169 TIVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                           ......-.....|+++ ..+..+               |+||++ +|++||+|+ +|.+. ..+|+      .++
T Consensus       402 -----~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~t~~ilG~~~-vg~~a-~e~i~------~~~  453 (499)
T PLN02507        402 -----LVFTSSFNPMKNTISGRQEKTVM---------------KLIVDAETDKVLGASM-CGPDA-PEIMQ------GIA  453 (499)
T ss_pred             -----EEEEeecCccccccccCCCCEEE---------------EEEEECCCCEEEEEEE-ECCCH-HHHHH------HHH
Confidence                 2222222222346666 455677               999965 999999999 88554 56777      666


Q ss_pred             HHHHHhhHH
Q 008635          247 FVVFLGTSA  255 (558)
Q Consensus       247 ~ai~~g~~~  255 (558)
                      .++..+.++
T Consensus       454 ~ai~~~~t~  462 (499)
T PLN02507        454 VALKCGATK  462 (499)
T ss_pred             HHHHCCCCH
Confidence            666666554

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.20  E-value=0.00011  Score=80.38  Aligned_cols=121  Identities=11%  Similarity=-0.008  Sum_probs=84.1

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-----ccCccccccccccccccchhhHHhhhcccchhhhh
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-----IDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLR  167 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-----~~~~~~~a~~~~t~~stgl~e~~~~~~~~~~~~l~  167 (558)
                      |+-++|+...     .....-|++|||.+++|++| ....     +..++.|   ....+++|++|+.+++.|++|    
T Consensus       308 IyA~GD~~~~-----~~la~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~t---~p~ia~vGlte~~a~~~g~~~----  374 (466)
T PRK06115        308 VWVIGDVTSG-----PMLAHKAEDEAVACIERIAG-KAGEVNYGLIPGVIYT---RPEVATVGKTEEQLKAEGRAY----  374 (466)
T ss_pred             EEEeeecCCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEC---CcccEEeeCCHHHHHHCCCCE----
Confidence            5556666431     23578899999999999995 4322     2233333   267999999999999999876    


Q ss_pred             cccccceeee--ecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 008635          168 NTIVALEESM--TNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPI  244 (558)
Q Consensus       168 ~~~~~~~~~~--~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PV  244 (558)
                            ....  ....+++.|+ +.....+               |+||++ +|++||+|+ +|. ....+|+      .
T Consensus       375 ------~~~~~~~~~~~~~~~~-~~~~g~~---------------klv~~~~~~~ilG~~~-~g~-~a~e~i~------~  424 (466)
T PRK06115        375 ------KVGKFPFTANSRAKIN-HETEGFA---------------KILADARTDEVLGVHM-VGP-SVSEMIG------E  424 (466)
T ss_pred             ------EEEEEecccChhhHhc-CCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------H
Confidence                  3322  2345555554 5566788               999965 999999999 884 5777788      7


Q ss_pred             hHHHHHHhhHHH
Q 008635          245 VPFVVFLGTSAT  256 (558)
Q Consensus       245 La~ai~~g~~~~  256 (558)
                      ++.++..+.+..
T Consensus       425 ~~~ai~~~~t~~  436 (466)
T PRK06115        425 FCVAMEFSASAE  436 (466)
T ss_pred             HHHHHHcCCCHH
Confidence            776666666543

>PTZ00058 glutathione reductase; Provisional

Probab=97.10  E-value=0.00014  Score=81.88  Aligned_cols=112  Identities=8%  Similarity=-0.085  Sum_probs=75.2

Q ss_pred             hhhhHhhhHhHHHHHhhcCcc-ccccCcccccccc-ccccccchhhHHhhhc-ccc-hhhhhcccccceeeeecCCCcee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVF-SSIDQTGGSAGSK-LTNFSTDLKEASSKAT-VAA-VDVLRNTIVALEESMTNGASFVV  185 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~-~~~~~~~~~a~~~-~t~~stgl~e~~~~~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~  185 (558)
                      ....|++|||++|+|++|+.. .....++.+.+.- ...|++||+|+.++.. |+. +           ++...+..+..
T Consensus       414 la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~-----------~~~~~~~~~~~  482 (561)
T PTZ00058        414 LTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENV-----------KIYESRFTNLF  482 (561)
T ss_pred             chHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcE-----------EEEEeecchhh
Confidence            467899999999999996422 1222456666665 5799999999999977 542 2           22222332221


Q ss_pred             e-----cCCC-cccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635          186 Y-----YYGT-TKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       186 y-----~pGa-~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~  255 (558)
                      |     .|+. ....+               |+|++ .+|++||+|+ +| .....+|+      .++.++..+.++
T Consensus       483 ~~~~~~~~~~~~~g~~---------------Kli~~~~t~~ILG~~i-vG-~~a~elI~------~~a~ai~~~~t~  536 (561)
T PTZ00058        483 FSVYDMDPAQKEKTYL---------------KLVCVGKEELIKGLHI-VG-LNADEILQ------GFAVALKMNATK  536 (561)
T ss_pred             hhhhcccccCCCCeEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------HHHHHHHcCCCH
Confidence            1     1443 34566               88996 5999999999 88 55777888      766666666554

>PLN02546 glutathione reductase

Probab=97.08  E-value=0.00014  Score=81.71  Aligned_cols=127  Identities=8%  Similarity=-0.063  Sum_probs=86.4

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccc-cccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~-~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++|+...     ...+..|++|||.+|+|++|+... ...+.+.+.+.. ...+++||+|+.+++.|++|++.    
T Consensus       383 IYAaGDv~~~-----~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~----  453 (558)
T PLN02546        383 IWAVGDVTDR-----INLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVF----  453 (558)
T ss_pred             EEEeeccCCC-----cccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEE----
Confidence            5556666421     124568999999999999964322 223567776666 47999999999999998876321    


Q ss_pred             ccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHH
Q 008635          171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV  249 (558)
Q Consensus       171 ~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai  249 (558)
                         ...+  ..++..|+++.....+               |+|+++ +|++||+|+ +|.+ ...+|+      .++.++
T Consensus       454 ---~~~~--~~~~~~~~~~~~~g~~---------------Klv~d~~t~~ILGa~i-vG~~-a~elI~------~~a~ai  505 (558)
T PLN02546        454 ---TANF--RPLKATLSGLPDRVFM---------------KLIVCAKTNKVLGVHM-CGED-APEIIQ------GFAVAV  505 (558)
T ss_pred             ---EEec--ccchhhhhCCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHHH
Confidence               1111  1233344455666777               999964 999999999 8865 577788      777777


Q ss_pred             HHhhHHH
Q 008635          250 FLGTSAT  256 (558)
Q Consensus       250 ~~g~~~~  256 (558)
                      ..+.+..
T Consensus       506 ~~~~t~~  512 (558)
T PLN02546        506 KAGLTKA  512 (558)
T ss_pred             HCCCCHH
Confidence            7666643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.08  E-value=0.00015  Score=78.89  Aligned_cols=126  Identities=6%  Similarity=0.006  Sum_probs=83.8

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Cccccccc-cccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++|+.. .    -..+..|++|||+++++++| ....++ ..+...+. ....+++|++|+.+++.|++|.+-+   
T Consensus       300 VyA~GD~~~-~----~~la~~A~~~g~~aa~~~~g-~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~---  370 (458)
T PRK06912        300 IYACGDVIG-G----IQLAHVAFHEGTTAALHASG-EDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGE---  370 (458)
T ss_pred             EEEEeecCC-C----cccHHHHHHHHHHHHHHHcC-CCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEE---
Confidence            555666552 1    23466899999999999995 554443 44555554 2668999999999999998762211   


Q ss_pred             ccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHH
Q 008635          171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV  249 (558)
Q Consensus       171 ~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai  249 (558)
                           .......++.| .+.....+               |+||++ +|++||+|+ +|. ....+|+      .++.++
T Consensus       371 -----~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~-~a~e~i~------~~~~ai  421 (458)
T PRK06912        371 -----FPFTANGKALI-IGEQTGKV---------------KVIVEPKYQEIVGISI-IGP-RATELIG------QGTVMI  421 (458)
T ss_pred             -----EecCcchhHhh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HHHHHH
Confidence                 01223333333 34466677               999965 999999999 786 4556788      766666


Q ss_pred             HHhhHHH
Q 008635          250 FLGTSAT  256 (558)
Q Consensus       250 ~~g~~~~  256 (558)
                      ..+.+..
T Consensus       422 ~~~~t~~  428 (458)
T PRK06912        422 HTEVTAD  428 (458)
T ss_pred             HCCCCHH
Confidence            6666543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.05  E-value=0.00019  Score=78.54  Aligned_cols=126  Identities=8%  Similarity=-0.048  Sum_probs=85.9

Q ss_pred             hhhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccc-cCccccccc-cccccccchhhHHhhhcccchhhhhc
Q 008635           91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~-~~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      ..|+-++++...     ...+..|.+||+.+|+++.| ....+ ...+.+.+. ....+++|++|+.+++.|++|     
T Consensus       315 ~~VyA~GD~~~~-----~~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~-----  383 (475)
T PRK06327        315 PNVYAIGDVVRG-----PMLAHKAEEEGVAVAERIAG-QKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEY-----  383 (475)
T ss_pred             CCEEEEEeccCC-----cchHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCE-----
Confidence            345566666431     13577899999999999995 33222 123344443 267899999999999999876     


Q ss_pred             ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                           .....  ....++.| .+.....+               |+|+++ +|++||+|+ +|.+ ...+|+      .+
T Consensus       384 -----~~~~~~~~~~~~~~~-~~~~~g~~---------------klv~d~~~~~ilG~~~-~g~~-a~e~i~------~~  434 (475)
T PRK06327        384 -----KAGKFPFMANGRALA-MGEPDGFV---------------KIIADAKTDEILGVHV-IGPN-ASELIA------EA  434 (475)
T ss_pred             -----EEEEEcccccchhhh-cCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HH
Confidence                 33322  22344554 46667888               999965 999999999 8854 677787      77


Q ss_pred             HHHHHHhhHHH
Q 008635          246 PFVVFLGTSAT  256 (558)
Q Consensus       246 a~ai~~g~~~~  256 (558)
                      +.++..+.++.
T Consensus       435 ~~ai~~~~t~~  445 (475)
T PRK06327        435 VVAMEFKASSE  445 (475)
T ss_pred             HHHHHCCCCHH
Confidence            77777666643

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.96  E-value=0.00021  Score=77.85  Aligned_cols=125  Identities=8%  Similarity=0.067  Sum_probs=80.6

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccc-ccc-Ccccccccc-ccccccchhhHHhhhc-ccc-hhhh
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SID-QTGGSAGSK-LTNFSTDLKEASSKAT-VAA-VDVL  166 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~-~~~-~~~~~a~~~-~t~~stgl~e~~~~~~-~~~-~~~l  166 (558)
                      .|+-++|+...     ...+..|.+|||.+|+|++||... .++ ..+...+.- ...+++||+|+.+++. |+. +   
T Consensus       297 ~IyAiGD~~~~-----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~---  368 (450)
T TIGR01421       297 GIYALGDVVGK-----VELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENI---  368 (450)
T ss_pred             CEEEEEecCCC-----cccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCE---
Confidence            35666665421     123567899999999999964322 111 233333332 5689999999999876 653 2   


Q ss_pred             hcccccceeeeecCCCceeec---CCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCC
Q 008635          167 RNTIVALEESMTNGASFVVYY---YGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPND  242 (558)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~y~---pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~  242 (558)
                              ++...+.+ ..|+   +|.....+               |+|++ .+|++||+|+ +| .....+|+     
T Consensus       369 --------~~~~~~~~-~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g-~~a~e~i~-----  417 (450)
T TIGR01421       369 --------KVYNSSFT-PMYYAMTSEKQKCRM---------------KLVCAGKEEKVVGLHG-IG-DGVDEMLQ-----  417 (450)
T ss_pred             --------EEEEEEcC-hhHHHHhcCCCceEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH-----
Confidence                    12222222 3333   47777788               99996 5999999999 78 67777788     


Q ss_pred             CchHHHHHHhhHHH
Q 008635          243 PIVPFVVFLGTSAT  256 (558)
Q Consensus       243 PVLa~ai~~g~~~~  256 (558)
                       .++.++..+.+..
T Consensus       418 -~~~~ai~~~~t~~  430 (450)
T TIGR01421       418 -GFAVAIKMGATKA  430 (450)
T ss_pred             -HHHHHHHCCCCHH
Confidence             7766666665543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=96.88  E-value=4.6e-05  Score=67.25  Aligned_cols=81  Identities=14%  Similarity=0.122  Sum_probs=58.9

Q ss_pred             ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhH
Q 008635          144 LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQ  222 (558)
Q Consensus       144 ~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLg  222 (558)
                      ...+++|++|+.+++.|++|        .+.+......+++.|+++ ....+               |+|+++ +|++||
T Consensus         9 p~ia~vGlte~~a~~~g~~~--------~~~~~~~~~~~~~~~~~~-~~g~~---------------Kli~d~~t~~IlG   64 (110)
T PF02852_consen    9 PEIASVGLTEEEARKQGIDY--------EVVTVPFKSNDRARYYPE-TEGFV---------------KLIFDKKTGRILG   64 (110)
T ss_dssp             SEEEEEES-HHHHHHHTSGE--------EEEEEEEGGEHHHHHTTT-TEEEE---------------EEEEETTTTBEEE
T ss_pred             CceEEEccCHHHHHhccCce--------eeeeecccccchhcccCC-cceee---------------EEEEEeeccceee
Confidence            45889999999999999876        223344445666777777 77888               999965 999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635          223 QQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT  256 (558)
Q Consensus       223 aQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~  256 (558)
                      +|+ +|.+ ...+|+      .++.++..+.+..
T Consensus        65 a~~-vg~~-a~e~I~------~~~~ai~~~~t~~   90 (110)
T PF02852_consen   65 AQI-VGPN-ASELIN------ELALAIQNGLTVE   90 (110)
T ss_dssp             EEE-EETT-HHHHHH------HHHHHHHTTSBHH
T ss_pred             eee-ecCc-hHHHHH------HHHHHHHcCCCHH
Confidence            999 7844 444777      6666666666544

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.75  E-value=0.00044  Score=74.87  Aligned_cols=126  Identities=11%  Similarity=0.043  Sum_probs=84.8

Q ss_pred             hhhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhh
Q 008635           91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLR  167 (558)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~  167 (558)
                      ..|+-.+++..     ....+..|.+||+++|+++.++....++. .......   ...+++|++|+.+++.|++|    
T Consensus       300 ~~IyaiGD~~~-----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~-~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~----  369 (461)
T TIGR01350       300 PGIYAIGDVIG-----GPMLAHVASHEGIVAAENIAGKEPAPIDY-DAVPSCIYTDPEVASVGLTEEQAKEAGYDV----  369 (461)
T ss_pred             CCEEEeeecCC-----CcccHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCeEEecCCceEEEeCCHHHHHhCCCCe----
Confidence            34555566542     12346789999999999999533323331 2222222   56889999999999999876    


Q ss_pred             cccccceeeeec--CCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 008635          168 NTIVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPI  244 (558)
Q Consensus       168 ~~~~~~~~~~~~--~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PV  244 (558)
                            +.....  ..+++.| ++.....+               |++++ .+|++||+|+ +|.+ ...+++      +
T Consensus       370 ------~~~~~~~~~~~~~~~-~~~~~g~~---------------kl~~~~~~~~ilG~~~-~g~~-a~e~i~------~  419 (461)
T TIGR01350       370 ------KIGKFPFAANGKALA-LGETDGFV---------------KIIADKKTGEILGAHI-IGPH-ATELIS------E  419 (461)
T ss_pred             ------EEEEEeCccchHHHh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------H
Confidence                  333232  2334444 47778888               99996 4899999999 8854 567788      7


Q ss_pred             hHHHHHHhhHHH
Q 008635          245 VPFVVFLGTSAT  256 (558)
Q Consensus       245 La~ai~~g~~~~  256 (558)
                      ++.++..+.++.
T Consensus       420 ~~~ai~~~~t~~  431 (461)
T TIGR01350       420 AVLAMELELTVE  431 (461)
T ss_pred             HHHHHHCCCCHH
Confidence            777777776654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.69  E-value=0.00056  Score=73.79  Aligned_cols=115  Identities=7%  Similarity=-0.081  Sum_probs=79.1

Q ss_pred             hhhhHhhhHhHHHHHhhcCcc--ccccCcccccccc-ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ..+-|..++|.++.+++++..  ....+.+.+.+.- ...+++|++|+.+++.|++|.+-+        .......++. 
T Consensus       298 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~--------~~~~~~~~~~-  368 (438)
T PRK07251        298 FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKE--------LLVAAMPRAH-  368 (438)
T ss_pred             cHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEE--------EECCcchhhh-
Confidence            456788899999999996432  1244566666433 779999999999999998772211        1122222332 


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT  256 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~  256 (558)
                      +++.....+               |+||++ +|++||+|+ +| .+...+|+      +++.++..+.+..
T Consensus       369 ~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g-~~a~e~i~------~~~~ai~~~~t~~  416 (438)
T PRK07251        369 VNNDLRGAF---------------KVVVNTETKEILGATL-FG-EGSQEIIN------LITMAMDNKIPYT  416 (438)
T ss_pred             hcCCCcEEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------HHHHHHHCCCCHH
Confidence            345556677               999965 899999999 88 46888888      7777766666543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.62  E-value=0.00058  Score=75.33  Aligned_cols=126  Identities=8%  Similarity=-0.049  Sum_probs=79.2

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc--ccccCcccccccc-ccccccchhhHHhhhc-cc-chhhh
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKAT-VA-AVDVL  166 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~a~~~-~t~~stgl~e~~~~~~-~~-~~~~l  166 (558)
                      .|+-++|+....    ......|++|||.+++|++++..  ..+.++ .+.+.. ...+++||||+.+++. |+ .+   
T Consensus       312 ~IyA~GDv~~~~----~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~-p~~i~~~p~ia~vGlte~~a~~~~g~~~~---  383 (484)
T TIGR01438       312 YIYAVGDILEDK----QELTPVAIQAGRLLAQRLFSGSTVICDYENV-PTTVFTPLEYGACGLSEEKAVEKFGEENI---  383 (484)
T ss_pred             CEEEEEEecCCC----ccchHHHHHHHHHHHHHHhcCCCcccccccC-CeEEeCCCceeeecCCHHHHHHhcCCCcE---
Confidence            466666665311    12356799999999999996442  235553 333333 7799999999999986 54 23   


Q ss_pred             hcccccceeeeecCCCceee-cCCC---cccccChhhhhhhhhhhhccceee-cc-chhhhHHHHHHHHHHHHHhcCCCC
Q 008635          167 RNTIVALEESMTNGASFVVY-YYGT---TKESLPPEIRDALNLYEDRAVKLW-RP-VGSALQQQVSVAIEGLERSLGFDP  240 (558)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~y-~pGa---~~~~l~p~~k~~~~~~ee~~k~i~-~~-~G~iLgaQ~~vg~~gvdkridf~~  240 (558)
                              ++...+.....| ++..   ....+               |+|| ++ +|++||+|+ +|- .....|+   
T Consensus       384 --------~~~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~~~~~t~~ILG~~i-vg~-~a~e~I~---  435 (484)
T TIGR01438       384 --------EVFHSYFWPLEWTIPSRDNSNKCYA---------------KAVCNRKENERVVGFHV-VGP-NAGEVTQ---  435 (484)
T ss_pred             --------EEEEeecchhhhHhhCCCccCCcEE---------------EEEEecCCCCeEEEEEE-ECC-CHHHHHH---
Confidence                    122222222222 2322   34556               8898 54 899999999 785 4666777   


Q ss_pred             CCCchHHHHHHhhHHH
Q 008635          241 NDPIVPFVVFLGTSAT  256 (558)
Q Consensus       241 ~~PVLa~ai~~g~~~~  256 (558)
                         .+++++..+.+..
T Consensus       436 ---~~a~ai~~~~t~~  448 (484)
T TIGR01438       436 ---GFAAALRCGLTKK  448 (484)
T ss_pred             ---HHHHHHHcCCCHH
Confidence               7777776666643

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=95.15  E-value=0.0054  Score=67.97  Aligned_cols=63  Identities=5%  Similarity=-0.084  Sum_probs=42.6

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccc--cCcccccccc-ccccccchhhHHhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI--DQTGGSAGSK-LTNFSTDLKEASSKAT  159 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~--~~~~~~a~~~-~t~~stgl~e~~~~~~  159 (558)
                      .|+-++|+...    ....+..|.+|||++|+|++|+. ..+  ...+.+.+.- ...|++|+||+.+++.
T Consensus       309 ~IyAiGDv~~~----~~~l~~~A~~~g~~aa~ni~g~~-~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~  374 (499)
T PTZ00052        309 NIFAVGDVVEG----RPELTPVAIKAGILLARRLFKQS-NEFIDYTFIPTTIFTPIEYGACGYSSEAAIAK  374 (499)
T ss_pred             CEEEEEEecCC----CcccHHHHHHHHHHHHHHHhCCC-CCcCccccCCeEEecCCcceeecCCHHHHHHh
Confidence            45555664421    11245789999999999999533 222  2334555553 7799999999999987

>COG2603 Predicted ATPase [General function prediction only]

Probab=95.10  E-value=0.036  Score=57.91  Aligned_cols=101  Identities=23%  Similarity=0.234  Sum_probs=59.7

Q ss_pred             CCcEEEEeCChhhhhhcCCCcccccccccccCCCc--hhhhhhHHhhhcC-CccchhhH---------HHHHHhhhhccC
Q 008635          286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL--PEVGGSVKKLLRG-GRELDDTL---------TAAVIRNLKIVQ  353 (558)
Q Consensus       286 e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL--~eL~~~l~eL~~~-~~~L~~~l---------~aa~i~~Lkgl~  353 (558)
                      .+..|||||.|-||..|+.|++.        |.|+  ++-+..+....+. .......+         ........+...
T Consensus        14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~   85 (334)
T COG2603          14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ   85 (334)
T ss_pred             cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            46789999999999999999998        7773  1111111111100 01111111         111111112223


Q ss_pred             CCcEEEEEeCCCh-hHHHHHHHH-HHcCCCcEEEEcccHHHHHH
Q 008635          354 DRSKVIVMDADGT-RSKGIARSL-RKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       354 kdk~VVVyC~sG~-RS~~AA~~L-~~~GfknVy~LdGG~~aWka  395 (558)
                      .+.|+-++|..|. ||...+..| ...|++ +--+.||+.+.+.
T Consensus        86 e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt  128 (334)
T COG2603          86 EENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRT  128 (334)
T ss_pred             HhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHH
Confidence            4567767787665 999999999 778874 4456799976643

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=94.81  E-value=0.04  Score=49.72  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=38.9

Q ss_pred             cccCHHHHHHHHhCCCC-cEEEEeCChhhhhhcCCCcc------cccccccccCCCchh--hhhhHHhhhcCCccchhhH
Q 008635          271 GDLSPKSTLELLRGKEN-AVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPE--VGGSVKKLLRGGRELDDTL  341 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~-avLIDVRsp~Ef~~GHIPGA------v~a~~~~~~nIPL~e--L~~~l~eL~~~~~~L~~~l  341 (558)
                      +.++++++.++.+  .+ -.||+.|+..|-.  +-|..      .......|.++|+..  +...              .
T Consensus        13 ~Q~~~~d~~~la~--~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~--------------~   74 (110)
T PF04273_consen   13 GQPSPEDLAQLAA--QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEE--------------D   74 (110)
T ss_dssp             CS--HHHHHHHHH--CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HH--------------H
T ss_pred             CCCCHHHHHHHHH--CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHH--------------H
Confidence            5799999998874  44 4899999875532  22221      112334556777532  1110              0


Q ss_pred             HHHHHhhhhccCCCcEEEEEeCCChhHHHHHHH
Q 008635          342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS  374 (558)
Q Consensus       342 ~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~  374 (558)
                      .......+..  ..+||.+||++|.|+...|.+
T Consensus        75 v~~f~~~l~~--~~~Pvl~hC~sG~Ra~~l~~l  105 (110)
T PF04273_consen   75 VEAFADALES--LPKPVLAHCRSGTRASALWAL  105 (110)
T ss_dssp             HHHHHHHHHT--TTTSEEEE-SCSHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCEEEECCCChhHHHHHHH
Confidence            1111111222  356999999999999655543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=94.00  E-value=0.17  Score=46.79  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcc------cccccccccCCCchhhhhhHHhhhcCCccchhhHHHH
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA  344 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGA------v~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa  344 (558)
                      +.++++++..+.+ ..=-.+||.|+..|....  |..      .......+.++|+..-  .+          .......
T Consensus        13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~~--p~~~~~~~~a~~~gl~y~~iPv~~~--~~----------~~~~v~~   77 (135)
T TIGR01244        13 PQLTKADAAQAAQ-LGFKTVINNRPDREEESQ--PDFAQIKAAAEAAGVTYHHQPVTAG--DI----------TPDDVET   77 (135)
T ss_pred             CCCCHHHHHHHHH-CCCcEEEECCCCCCCCCC--CCHHHHHHHHHHCCCeEEEeecCCC--CC----------CHHHHHH
Confidence            5789999887653 233589999998775432  211      0011234456664310  00          0001111


Q ss_pred             HHhhhhccCCCcEEEEEeCCChhHHHHHHHH-HHcCC
Q 008635          345 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGV  380 (558)
Q Consensus       345 ~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L-~~~Gf  380 (558)
                      ..+.+.  ..++||++||++|.|+..+|.++ ...|.
T Consensus        78 f~~~~~--~~~~pvL~HC~sG~Rt~~l~al~~~~~g~  112 (135)
T TIGR01244        78 FRAAIG--AAEGPVLAYCRSGTRSSLLWGFRQAAEGV  112 (135)
T ss_pred             HHHHHH--hCCCCEEEEcCCChHHHHHHHHHHHHcCC
Confidence            111121  13589999999999987776543 33454

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=86.26  E-value=0.28  Score=54.37  Aligned_cols=66  Identities=12%  Similarity=-0.021  Sum_probs=44.2

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccc-cCcccccccc-ccccccchhhHHhhhcccch
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGSK-LTNFSTDLKEASSKATVAAV  163 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~-~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~  163 (558)
                      |.-.+|++..-+     -..-|..|||++++|++|+..... ...+-.++-- =..++.||+|+++++.|++|
T Consensus       305 IyA~GDV~~~~~-----Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~  372 (454)
T COG1249         305 IYAIGDVIGGPM-----LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDY  372 (454)
T ss_pred             EEEeeccCCCcc-----cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCce
Confidence            555566544433     345789999999999995222222 2333333333 44889999999999999876

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=85.24  E-value=0.17  Score=53.43  Aligned_cols=53  Identities=13%  Similarity=0.060  Sum_probs=42.8

Q ss_pred             CCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhh
Q 008635          269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL  331 (558)
Q Consensus       269 ~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~  331 (558)
                      |...-+++++.+.+.  .....+|+|.+..|..+||||++        ++|...+...+..+.
T Consensus        12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~   64 (314)
T PRK00142         12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK   64 (314)
T ss_pred             cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence            444567888888775  45779999999999999999999        999877777766554

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=82.12  E-value=0.5  Score=56.26  Aligned_cols=93  Identities=12%  Similarity=-0.034  Sum_probs=61.5

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      |+-++++.. ..+.+...+..|.+||+++|+|++| ....|++...+...|   +.++|.|.      ..+.+       
T Consensus       276 IYAiGD~a~-~~~~~~gl~~~a~~~a~vaa~~i~g-~~~~~~g~~~~~~lk~~G~~v~s~G~------~~~~~-------  340 (847)
T PRK14989        276 IYAIGECAS-WNNRVFGLVAPGYKMAQVAVDHLLG-SENAFEGADLSAKLKLLGVDVGGIGD------AHGRT-------  340 (847)
T ss_pred             EEEeeccee-EcCcccccHHHHHHHHHHHHHHhcC-CCcCCCCcccceEEEECCcceEeccc------ccCCC-------
Confidence            444455432 1234455678899999999999995 677899988887777   56777772      12211       


Q ss_pred             cccceeeeecCCCc-eeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHH
Q 008635          170 IVALEESMTNGASF-VVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQV  225 (558)
Q Consensus       170 ~~~~~~~~~~~~~~-~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~  225 (558)
                                ..++ ..|+++......               |+||+ .+++++|+|+
T Consensus       341 ----------~~~~~~~~~~~~~~~y~---------------Klv~~~~~~~LlGa~l  373 (847)
T PRK14989        341 ----------PGARSYVYLDESKEIYK---------------RLIVSEDNKTLLGAVL  373 (847)
T ss_pred             ----------CCceeEEEEcCCCCEEE---------------EEEEECCCCEEEEEEE
Confidence                      1122 346677667777               88885 4778888866

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=80.42  E-value=0.52  Score=53.37  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      +|+++++..+    +...++|.|...||.++|+++++        |+|...-+..++.+....          ++..   
T Consensus       623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~l~----------~~~~---  677 (725)
T KOG1093|consen  623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRFLP----------GIVC---  677 (725)
T ss_pred             cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhcch----------HhHH---
Confidence            4666655443    35679999999999999999999        999773333443332110          1111   


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHH
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSW  393 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aW  393 (558)
                       ...+.++++.....-+.+-...+..+-+.+..++.+|+..+
T Consensus       678 -~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~  718 (725)
T KOG1093|consen  678 -SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI  718 (725)
T ss_pred             -hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence             13455555555444444545555555577777888888744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	558
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	1e-15
1vee_A	134	Proline-rich protein family; hypothetical protein,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	2e-07
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	6e-07
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-06
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	7e-06
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	9e-05
1tq1_A	129	AT5G66040, senescence-associated family protein; C	3e-04
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	3e-04
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	4e-04
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	5e-04
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	6e-04

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 73.2 bits (179), Expect = 1e-15
 Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 268 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV 327
            Y+GD++P    E+L     AVL+DVR E      G+PDL            L      V
Sbjct: 2   SYAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSS----------LGREVVYV 51

Query: 328 KKLLRGGRELDDTLTAAVIRNLKIVQDRSK-VIVMDADGTRSKGIARSLRKLGVMVTFLV 386
           +     G   D+ L     R         + VI +   G RS G A    + G+   + V
Sbjct: 52  EWATSDGTHNDNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNV 111

Query: 387 QGGFQSWVKEG 397
             GF+  +   
Sbjct: 112 LDGFEGHLDAE 122

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 267 GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS 326
           G      S K+    L   +NA L+D+R      + G P+++   +   ++VY       
Sbjct: 1   GSSGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVY------- 53

Query: 327 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLV 386
                    E        +    K  ++   + ++D     S+ +A  +   G    + +
Sbjct: 54  -------NGEDKPGFLKKLSLKFKDPENT-TLYILDKFDGNSELVAELVALNGFKSAYAI 105

Query: 387 QGGFQS---WVKEGLRIKELKSETA 408
           + G +    W+   L   E K  + 
Sbjct: 106 KDGAEGPRGWLNSSLPWIEPKKTSG 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 72/474 (15%), Positives = 143/474 (30%), Gaps = 150/474 (31%)

Query: 45  KTTLAIE-----------------LTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNE 87
           KT +A++                 L  +N  +    L+M    +  I  ++         
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-----RS 217

Query: 88  SFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEA---VDNVVS-RVFSSIDQTGGSAGSK 143
             SS++    +++++ L  +  S     K        + NV + + +++ +        K
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKS-----KPYENCLLVLLNVQNAKAWNAFN-----LSCK 267

Query: 144 --LTNFSTDLKEASSKATVAAVDVLRNTIVALEE---SMT--NGASFVVYYYGTTKESLP 196
             LT  +        K     +     T ++L+    ++T     S ++ Y     + LP
Sbjct: 268 ILLT--TRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 197 PE---------------IRDALNLYEDRAVKLWRPVG-SALQQQVSVAIEGLE------- 233
            E               IRD L  +++     W+ V    L   +  ++  LE       
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 234 -RSLG-FDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGD------LSPKSTLELLRGK 285
              L  F P+  I         +  L +    W     S        L   S +E  + K
Sbjct: 375 FDRLSVFPPSAHI--------PTILLSLI---WFDVIKSDVMVVVNKLHKYSLVE-KQPK 422

Query: 286 ENAVLIDVRHEDLR-ERDGIPDLRRG--ARFRYASVYLPE--------------VGGSVK 328
           E+ + I   + +L+ + +    L R     +     +  +              +G  +K
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 329 KLLRGGRE-------LDDTLTAAVIRN-----------LKIVQD--RSKVIVMDADGTRS 368
            +    R        LD       IR+           L  +Q     K  + D D    
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 369 KGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILED 422
                  R +  ++ FL +        +   +  +        L  + EAI E+
Sbjct: 543 -------RLVNAILDFLPKIEENLICSKYTDLLRI-------ALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 58/410 (14%), Positives = 119/410 (29%), Gaps = 123/410 (30%)

Query: 191 TKESLPPEIRDALNLYEDRAVKLWRPVGSALQQQ---VSVAIEG-LERSLGF-------D 239
           +KE    EI   +   +D      R   + L +Q   V   +E  L  +  F       +
Sbjct: 47  SKE----EIDHIIMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 240 PNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLR 299
              P +   +++     L+             D    +   + R +         +  LR
Sbjct: 102 QRQPSMMTRMYIEQRDRLY------------NDNQVFAKYNVSRLQP--------YLKLR 141

Query: 300 ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRS-KV 358
           +   + +LR     +   +    V GS K            +   V  + K+      K+
Sbjct: 142 Q--ALLELRPA---KNVLID--GVLGSGKT----------WVALDVCLSYKVQCKMDFKI 184

Query: 359 IVMD-ADGTRSKGIARSLRKLGV-MVTFLVQGGFQS--------WVKEGLR--IKELKSE 406
             ++  +    + +   L+KL   +          S         ++  LR  +K    E
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 407 TALTILNEDAEAILEDINSSPVQFLGFGVGCFAVLYVLLEWEKTL---QFIAVI-GLGQT 462
             L  L      +L ++ ++   +  F + C           K L   +F  V   L   
Sbjct: 245 NCL--L------VLLNVQNAKA-WNAFNLSC-----------KILLTTRFKQVTDFLSAA 284

Query: 463 IYRRVASYNDAEDFKQDVRL-LLAPVRIGARAFSWAAGKLETNRPGLP-----TSPSSVD 516
               ++  + +     D    LL           +    L+     LP     T+P  + 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLL---------KY----LDCRPQDLPREVLTTNPRRLS 331

Query: 517 VQNRVLQAAAKHESQPADTEGIQDPSSE--------SVASMNENIPRNFF 558
                + A +  +   A  +  +  + +        S+  +     R  F
Sbjct: 332 -----IIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 28/139 (20%)

Query: 273 LSPKSTLELL-RGKENAVLIDVRHEDLRERDG-IPDLRRGARFRYASVYLPEVGGSVKKL 330
           L+    + L   G  + V++D+R     ERDG IP           S             
Sbjct: 24  LTTADAIALHKSGASDVVIVDIRDPREIERDGKIPG----------SFSCT--------- 64

Query: 331 LRGGRE--LDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQG 388
            RG  E  +D              +D+ K +   A G RS   A++ + +G+     ++G
Sbjct: 65  -RGMLEFWIDPQSPY---AKPIFQEDK-KFVFYCAGGLRSALAAKTAQDMGLKPVAHIEG 119

Query: 389 GFQSWVKEGLRIKELKSET 407
           GF +W   G  I+    + 
Sbjct: 120 GFGAWRDAGGPIEAWAPKK 138

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 30/151 (19%)

Query: 258 WIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYAS 317
              +          D    +TL    G+    ++D        +  IP    GA +    
Sbjct: 363 RGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIP----GAAW---- 414

Query: 318 VYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRK 377
           V   ++  ++++L    R                       ++       ++     ++ 
Sbjct: 415 VLRSQLKQALERLGTAER----------------------YVLTCGSSLLARFAVAEVQA 452

Query: 378 LGVMVTFLVQGGFQSWVKEGLRIKELKSETA 408
           L     FL+ GG  +WV  GL  ++ +S  A
Sbjct: 453 LSGKPVFLLDGGTSAWVAAGLPTEDGESLLA 483

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 24/127 (18%), Positives = 33/127 (25%), Gaps = 30/127 (23%)

Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
            +       L  +    L+DVR ED   +               +  LP           
Sbjct: 9   RTFHDIRAALLARRELALLDVREEDPFAQAHPLF----------AANLP----------L 48

Query: 333 GGRELDDTLTAAVIRNLKIVQDRSK-VIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQ 391
              EL              V  R   + V D     +   A+ L  LG     L+ GG  
Sbjct: 49  SRLEL---------EIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLS 99

Query: 392 SWVKEGL 398
            W   G 
Sbjct: 100 GWRNAGG 106

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 25/127 (19%)

Query: 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 331
            LSPK   +LL+   +  LIDVR  D  +  G PD++          ++           
Sbjct: 24  MLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKN-------YKHMS---------- 66

Query: 332 RGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQ 391
           RG  E         +    +  ++  V+V      R+    ++LR+ G    +  +GG  
Sbjct: 67  RGKLEPL-------LAKSGLDPEK-PVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118

Query: 392 SWVKEGL 398
            W++EGL
Sbjct: 119 KWLEEGL 125

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 36/123 (29%)

Query: 280 ELLRGKENAVLIDVRHEDLRERDG-IPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELD 338
           ++       V++DVR+   + +   I     GA     ++   ++   + +L        
Sbjct: 25  DMQNATGKYVVLDVRNAPAQVKKDQIK----GAI----AMPAKDLATRIGEL-------- 68

Query: 339 DTLTAAVIRNLKIVQDRSK-VIVMDADGTRSKGI--ARSLRKLGVMVTFLVQGGFQSWVK 395
                          D +K  +V D  G  + G      L   G     L  G  + W  
Sbjct: 69  ---------------DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYEL-AGALEGWKG 112

Query: 396 EGL 398
             L
Sbjct: 113 MQL 115

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 27/129 (20%), Positives = 37/129 (28%), Gaps = 24/129 (18%)

Query: 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDG--IPDLRRGARFRYASVYLPEVGGSVKK 329
            +S     +LL        +DVR  +  E           GA     +V     G S   
Sbjct: 19  SVSVTVAHDLL--LAGHRYLDVRTPE--EFSQGHAC----GAI----NVPYMNRGASGMS 66

Query: 330 LLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGG 389
                 E           +    Q    +IV    G RS      L   G      + GG
Sbjct: 67  KNTDFLEQ---------VSSHFGQSD-NIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGG 116

Query: 390 FQSWVKEGL 398
           + +W K GL
Sbjct: 117 YSAWAKNGL 125

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 28/119 (23%)

Query: 280 ELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDD 339
           ++ +G E  +++DVR  +  +   IP     A      + +P              ++++
Sbjct: 26  DIKKGYEGIIVVDVRDAEAYKECHIP----TA------ISIPG------------NKINE 63

Query: 340 TLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL 398
             T  + +   I+               +   A    +LG  V   + GG + W KE  
Sbjct: 64  DTTKRLSKEKVII-----TYCWGPACNGATKAAAKFAQLGFRVK-ELIGGIEYWRKENG 116

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 23/120 (19%)

Query: 281 LLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV---KKLLRGGREL 337
           + +   N VL+DVR                    Y+ V++P    S+    +       L
Sbjct: 34  VGKHDPNVVLVDVREPS----------------EYSIVHIP---ASINVPYRSHPDAFAL 74

Query: 338 DDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG 397
           D       I   K    + ++I   A G R     +     G   T L  G    WV  G
Sbjct: 75  DPLEFEKQIGIPKPDSAK-ELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHG 133

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 35/148 (23%)

Query: 280 ELLRGKENAVLIDVRHEDLRERDG--IPDLRRGARFRYASVYLPEVGGSVKKLLRGGREL 337
            L  G+    ++DVR       +   I     GA     ++ + ++       L   R+ 
Sbjct: 10  RLEWGEPAFTILDVRDRS--TYNDGHIM----GAM----AMPIEDLVDRASSSLEKSRD- 58

Query: 338 DDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG 397
                               + V  A   ++      LR  G      ++GG  +W   G
Sbjct: 59  --------------------IYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIG 98

Query: 398 LRIKELKSETALTILNEDAEAILEDINS 425
              + +           D   ++  + +
Sbjct: 99  GPTEGIIESRTPA--GADDYNVVSRMQN 124

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 33/121 (27%)

Query: 280 ELLRGKENAVLIDVRHEDLRERDG--IPDLRRGARFRYASVYLPEVGGSVKKLLRGGREL 337
            L  G+    ++DVR       +   I     GA     ++ + ++       L   R+ 
Sbjct: 6   RLEWGEPAFTILDVRDRS--TYNDGHIM----GAM----AMPIEDLVDRASSSLEKSRD- 54

Query: 338 DDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG 397
                               + V  A   ++      LR  G      ++GG  +W   G
Sbjct: 55  --------------------IYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIG 94

Query: 398 L 398
            
Sbjct: 95  G 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	558
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.95
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.94
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.9
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.89
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.88
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.87
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.86
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.85
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.85
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.84
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.84
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.83
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.83
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.82
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.82
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.81
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.8
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.79
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.79
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.79
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.77
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.77
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.77
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.75
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.74
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.73
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.72
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.72
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.71
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.71
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.71
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.7
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.7
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.7
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.69
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.69
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.69
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.68
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.68
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.68
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.68
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.67
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.66
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.66
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.66
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.66
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.66
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.65
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.65
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.64
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.63
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.63
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.61
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.6
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.58
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.51
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.5
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.5
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.48
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.48
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.39
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.39
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.35
3r2u_A	466	Metallo-beta-lactamase family protein; structural	98.89
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.29
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.23
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.09
4dna_A	463	Probable glutathione reductase; structural genomic	97.67
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.55
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.52
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.48
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.4
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.33
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.31
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.24
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.04
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.96
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.87
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.8
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.77
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.74
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.64
2f46_A	156	Hypothetical protein; structural genomics, joint c	96.54
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.46
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.17
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.97
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.95
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.92
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.79
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.77
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.72
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.65
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.64
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.58
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.48
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.42
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.32
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.04
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.91
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.47
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.43
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.4
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	92.88

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.95  E-value=4.7e-29  Score=269.57  Aligned_cols=221  Identities=20%  Similarity=0.248  Sum_probs=182.6

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      .+..|.+|||.+|+|++| ....+.+...+...+   ...+++|++|+.+++.|++|          +.......+++.|
T Consensus       320 ~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~----------~~~~~~~~~~~~~  388 (565)
T 3ntd_A          320 LAGPANRQGRMAADNMFG-REERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAF----------EKVYVHTASHASY  388 (565)
T ss_dssp             CHHHHHHHHHHHHHHHTT-CCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCC----------EEEEEEEESSCTT
T ss_pred             cHHHHHHHHHHHHHHhcC-CCccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCe----------EEEEEecCcccCc
Confidence            567899999999999995 666788877766544   67899999999999999876          4555566778899


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH-HH---HHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT-LW---IFY  261 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~-L~---l~Y  261 (558)
                      |||..+..+               |+|++ .+|++||+|+ +|-+++..+|+      .++.++..+.+.. +.   +.|
T Consensus       389 ~~~~~~~~~---------------k~v~~~~~~~ilG~~~-~g~~a~~e~i~------~~~~ai~~~~~~~~l~~~~~~~  446 (565)
T 3ntd_A          389 YPGAEVVSF---------------KLLFDPVKGTIFGAQA-VGKDGIDKRID------VMAVAQRAGMTVEQLQHLELSY  446 (565)
T ss_dssp             STTCCEEEE---------------EEEECTTTCBEEEEEE-EESSSHHHHHH------HHHHHHHTTCBHHHHTTCCCCC
T ss_pred             CCCCceEEE---------------EEEEECCCCEEEEEEE-ECCccHHHHHH------HHHHHHHcCCCHHHHhhhhhcc
Confidence            999999989               99996 5999999999 88888788888      7777777777765 11   123


Q ss_pred             HH-----------------HHhcCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhh
Q 008635          262 WW-----------------WTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG  324 (558)
Q Consensus       262 ap-----------------~~~~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~  324 (558)
                      .|                 +...+....|+++++.++   +++.+|||||++.||+.+|||||+        |+|++++.
T Consensus       447 ~P~~~~~~~~i~~aa~~~~~~~~~~~~~i~~~~~~~~---~~~~~~iDvR~~~e~~~~~i~ga~--------~ip~~~l~  515 (565)
T 3ntd_A          447 APPYGSAKDVINQAAFVASNIIKGDATPIHFDQIDNL---SEDQLLLDVRNPGELQNGGLEGAV--------NIPVDELR  515 (565)
T ss_dssp             CTTTCCSSCHHHHHHHHHHHHHHTSCCEECTTTTTSC---CTTEEEEECSCGGGGGGCCCTTCE--------ECCGGGTT
T ss_pred             CcccCchhhhhhhhhhhhhhccccccceeeHHHHHhC---CCCcEEEEeCCHHHHhcCCCCCcE--------ECCHHHHH
Confidence            22                 233455667899987765   367899999999999999999999        99999887


Q ss_pred             hhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635          325 GSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG  397 (558)
Q Consensus       325 ~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG  397 (558)
                      +.+.++                      +++++||+||++|.||..+++.|+++|| +|++|+|||.+|+++|
T Consensus       516 ~~~~~~----------------------~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          516 DRMHEL----------------------PKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             TSGGGS----------------------CTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             HHHhhc----------------------CCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHHHHHhCc
Confidence            765543                      3789999999999999999999999999 9999999999999876

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.94  E-value=6.2e-29  Score=271.26  Aligned_cols=224  Identities=18%  Similarity=0.163  Sum_probs=184.3

Q ss_pred             hhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCcee
Q 008635          109 SSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVV  185 (558)
Q Consensus       109 ~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  185 (558)
                      .....|.+|||.+|+|++|.....+.+...+.+.+   ...+++|++|+.+++.|++|          ++......+++.
T Consensus       334 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~----------~~~~~~~~~~~~  403 (588)
T 3ics_A          334 PLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPY----------EVVHVQANSHAG  403 (588)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCC----------EEEEEEEESSCT
T ss_pred             ccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEEecCCHHHHHHcCCCe----------EEEEEecCCccc
Confidence            35668999999999999942667788888888765   66899999999999999877          444455567788


Q ss_pred             ecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH-H---HHH
Q 008635          186 YYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT-L---WIF  260 (558)
Q Consensus       186 y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~-L---~l~  260 (558)
                      ||+|.....+               |+|++ .+|++||+|+ +|-++...+|+      .++.++..+.+.. +   ..+
T Consensus       404 ~~~~~~~~~~---------------k~i~~~~~~~ilG~~~-~g~~~~~e~i~------~~~~ai~~~~t~~~l~~~~~~  461 (588)
T 3ics_A          404 YYPNATPVLI---------------KLIFNKDSGKIYGAQT-LGRDGVDKRMD------VIATAIKANLTVLDLPDLELS  461 (588)
T ss_dssp             TSTTCCEEEE---------------EEEECTTTCBEEEEEE-EESSSHHHHHH------HHHHHHHTTCBTTTGGGCCCC
T ss_pred             cCCCCceEEE---------------EEEEECCCCeEEEEEE-EcCCcHHHHHH------HHHHHHHcCCCHHHhhhhhhc
Confidence            9999999999               99996 5999999999 88766777777      7777777666543 1   112


Q ss_pred             HHH-----------------HHhcCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhh
Q 008635          261 YWW-----------------WTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV  323 (558)
Q Consensus       261 Yap-----------------~~~~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL  323 (558)
                      |.|                 +...+....|+++++.++++  ++.+|||||++.||+.+|||||+        |+|++++
T Consensus       462 ~~P~~~~~~d~i~~aa~~a~n~~~~~~~~i~~~~~~~~~~--~~~~~iDvR~~~e~~~ghi~ga~--------~ip~~~l  531 (588)
T 3ics_A          462 YAPPYSSAKDPVNMVGYAASNIVDGFVDTVQWHEIDRIVE--NGGYLIDVREPNELKQGMIKGSI--------NIPLDEL  531 (588)
T ss_dssp             CSTTTCCSSCHHHHHHHHHHHHHTTSCCEECTTTHHHHHH--TTCEEEECSCGGGGGGCBCTTEE--------ECCHHHH
T ss_pred             cCCCcccccchhhhcccccccccccccceecHHHHHHHhc--CCCEEEEcCCHHHHhcCCCCCCE--------ECCHHHH
Confidence            322                 34566677899999999985  56899999999999999999999        9999988


Q ss_pred             hhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635          324 GGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG  397 (558)
Q Consensus       324 ~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG  397 (558)
                      .+.+.++                      +++++||+||++|.||..+++.|+++||+ |++|+|||.+|+++.
T Consensus       532 ~~~~~~l----------------------~~~~~iv~~C~~g~rs~~a~~~l~~~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          532 RDRLEEV----------------------PVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             TTCGGGS----------------------CSSSCEEEECSSSHHHHHHHHHHHHTTCC-EEEETTHHHHHHHHC
T ss_pred             HHHHhhC----------------------CCCCeEEEECCCCcHHHHHHHHHHHcCCc-EEEEcchHHHHHhhh
Confidence            7766543                      36889999999999999999999999998 999999999998753

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.90  E-value=6.4e-24  Score=185.02  Aligned_cols=101  Identities=21%  Similarity=0.378  Sum_probs=91.1

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      +.||++|+.+++.++++++|||||++.||+.||||||+        |||+++|..++.++                    
T Consensus         2 k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~~l--------------------   53 (103)
T 3iwh_A            2 KSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAK--------LIPMDTIPDNLNSF--------------------   53 (103)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCE--------ECCGGGGGGCGGGC--------------------
T ss_pred             CCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcc--------cCcccchhhhhhhh--------------------
Confidence            46999999998876678999999999999999999999        99999988776543                    


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                        +++++||+||++|.||..+++.|+++||+ +++|.|||.+|+++|+|++.
T Consensus        54 --~~~~~ivv~C~~G~rS~~aa~~L~~~G~~-~~~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           54 --NKNEIYYIVCAGGVRSAKVVEYLEANGID-AVNVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             --CTTSEEEEECSSSSHHHHHHHHHHTTTCE-EEEETTHHHHHCSSSCBCCC
T ss_pred             --cCCCeEEEECCCCHHHHHHHHHHHHcCCC-EEEecChHHHHHHCCCccee
Confidence              37899999999999999999999999995 55799999999999999975

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.89  E-value=1.8e-23  Score=179.00  Aligned_cols=99  Identities=19%  Similarity=0.316  Sum_probs=90.0

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++++.++++++++.+|||||++.||..||||||+        |+|++++.+.+.++                    
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~~l--------------------   53 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAE--------TIPMNSIPDNLNYF--------------------   53 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCE--------ECCGGGGGGCGGGS--------------------
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCE--------ECCHHHHHHHHHhC--------------------
Confidence            46899999999865678999999999999999999999        99999887765443                    


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI  400 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV  400 (558)
                        +++++||+||++|.||..+++.|+++|| +|++|+|||.+|+++|+|+
T Consensus        54 --~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           54 --NDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             --CTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             --CCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence              3789999999999999999999999999 9999999999999999986

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.87  E-value=2.4e-22  Score=174.95  Aligned_cols=102  Identities=25%  Similarity=0.319  Sum_probs=90.8

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++++.+++.  . .+|||||++.||+.||||||+        |+|+.++...+.++                   
T Consensus         3 ~~~is~~el~~~l~--~-~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~~l-------------------   52 (108)
T 3gk5_A            3 YRSINAADLYENIK--A-YTVLDVREPFELIFGSIANSI--------NIPISELREKWKIL-------------------   52 (108)
T ss_dssp             CCEECHHHHHHTTT--T-CEEEECSCHHHHTTCBCTTCE--------ECCHHHHHHHGGGS-------------------
T ss_pred             ccEeCHHHHHHHHc--C-CEEEECCCHHHHhcCcCCCCE--------EcCHHHHHHHHHhC-------------------
Confidence            46799999999884  2 899999999999999999999        99999887765443                   


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                         +++++||+||++|.||..+++.|+++|| +|++|+|||.+|+++|+|++...+
T Consensus        53 ---~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~~~~  104 (108)
T 3gk5_A           53 ---ERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLEHH  104 (108)
T ss_dssp             ---CTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBCC--
T ss_pred             ---CCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCCCCC
Confidence               3788999999999999999999999999 999999999999999999988544

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.86  E-value=5.6e-22  Score=171.69  Aligned_cols=101  Identities=22%  Similarity=0.330  Sum_probs=90.8

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++++.++++ +++.+|||||++.||..||||||+        |+|+.++...+.++                    
T Consensus         5 ~~i~~~~l~~~~~-~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~~l--------------------   55 (108)
T 1gmx_A            5 ECINVADAHQKLQ-EKEAVLVDIRDPQSFAMGHAVQAF--------HLTNDTLGAFMRDN--------------------   55 (108)
T ss_dssp             EEECHHHHHHHHH-TTCCEEEECSCHHHHHHCEETTCE--------ECCHHHHHHHHHHS--------------------
T ss_pred             cccCHHHHHHHHh-CCCCEEEEcCCHHHHHhCCCccCE--------eCCHHHHHHHHHhc--------------------
Confidence            4699999999985 346899999999999999999999        99998887766543                    


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecC
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                        +++++||+||++|.||..+++.|+++||++|++|+||+.+|+++ +|++.+
T Consensus        56 --~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~~  105 (108)
T 1gmx_A           56 --DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVA  105 (108)
T ss_dssp             --CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGEE
T ss_pred             --CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHHHHh-CCcccc
Confidence              36889999999999999999999999999999999999999999 998764

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.85  E-value=2.4e-21  Score=174.13  Aligned_cols=114  Identities=22%  Similarity=0.289  Sum_probs=92.6

Q ss_pred             CcccCHHHHHHHHhC-CCCcEEEEeCChhhhhh-cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHh
Q 008635          270 SGDLSPKSTLELLRG-KENAVLIDVRHEDLRER-DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR  347 (558)
Q Consensus       270 ~~~ISp~El~elL~~-~e~avLIDVRsp~Ef~~-GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~  347 (558)
                      ...|+++++.+++.+ +++.+|||||++.||.. ||||||+        |+|+.++...+......              
T Consensus        21 ~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~--------~ip~~~l~~~~~~~~~~--------------   78 (139)
T 2hhg_A           21 IETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSF--------SCTRGMLEFWIDPQSPY--------------   78 (139)
T ss_dssp             SEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCE--------ECCGGGHHHHHCTTSTT--------------
T ss_pred             cCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeE--------ECChHHHHHhcCccchh--------------
Confidence            457999999999853 35789999999999999 9999999        99998886543221100              


Q ss_pred             hhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          348 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       348 ~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      ....++++++|||||++|.||..+++.|+++||++|++|+|||.+|.++|+|++.+.+
T Consensus        79 ~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  136 (139)
T 2hhg_A           79 AKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAWAP  136 (139)
T ss_dssp             CCGGGGSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC----
T ss_pred             hhccCCCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecCCC
Confidence            0112357899999999999999999999999999999999999999999999987543

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.85  E-value=1.2e-21  Score=177.67  Aligned_cols=108  Identities=22%  Similarity=0.355  Sum_probs=93.5

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhh-cC--CCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHH
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRER-DG--IPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI  346 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~-GH--IPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i  346 (558)
                      ...|+++++.+++.++++.+|||||++.||+. ||  ||||+        |+|+.++.... .+                
T Consensus        22 ~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAi--------nip~~~l~~~~-~~----------------   76 (137)
T 1qxn_A           22 MVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYK--------HMSRGKLEPLL-AK----------------   76 (137)
T ss_dssp             SEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEE--------ECCTTTSHHHH-HH----------------
T ss_pred             CcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCE--------EcchHHhhhHH-hh----------------
Confidence            45799999999985346789999999999999 99  99999        99998876421 11                


Q ss_pred             hhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          347 RNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       347 ~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                         ..++++++|||||++|.||..+++.|+++||++|++|+|||.+|.++|+|++.+.+
T Consensus        77 ---~~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  132 (137)
T 1qxn_A           77 ---SGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRSH  132 (137)
T ss_dssp             ---HCCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECCCC
T ss_pred             ---ccCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccccc
Confidence               12347899999999999999999999999999999999999999999999988654

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.84  E-value=1.3e-21  Score=169.49  Aligned_cols=100  Identities=14%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             HHHHHHhC-CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCC
Q 008635          277 STLELLRG-KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDR  355 (558)
Q Consensus       277 El~elL~~-~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kd  355 (558)
                      |+.+++.. +++.+|||||++.||..||||||+        |+|+.++...+...                     ++++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~---------------------l~~~   52 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAM--------AMPIEDLVDRASSS---------------------LEKS   52 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCE--------ECCGGGHHHHHHHH---------------------SCTT
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHHHHHHHhc---------------------CCCC
Confidence            55666642 346899999999999999999999        99999887654221                     2368


Q ss_pred             cEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          356 SKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       356 k~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      ++||+||++|.||..+++.|+.+||++|++|+|||.+|+++|+|+....+
T Consensus        53 ~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~~~  102 (106)
T 3hix_A           53 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTELEHH  102 (106)
T ss_dssp             SCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHHHHTTCCEEECCE
T ss_pred             CeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHHHHCCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999988654

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.84  E-value=4.1e-21  Score=175.41  Aligned_cols=104  Identities=13%  Similarity=0.171  Sum_probs=91.5

Q ss_pred             cCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          273 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       273 ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      |+++++.++++.+ ++++|||||++.||..||||||+        |+|+.++...+..                     .
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~---------------------~   52 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAM--------AMPIEDLVDRASS---------------------S   52 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCE--------ECCGGGHHHHHHT---------------------T
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCE--------EcCHHHHHHHHHh---------------------c
Confidence            7899999998643 36899999999999999999999        9999888765421                     1


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      ++++++|||||++|.||..+++.|+.+||++|++|+|||.+|+++|+|++...+
T Consensus        53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  106 (141)
T 3ilm_A           53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGIIE  106 (141)
T ss_dssp             SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEEC-
T ss_pred             CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccCCC
Confidence            347899999999999999999999999999999999999999999999988653

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.83  E-value=8.9e-21  Score=170.88  Aligned_cols=116  Identities=20%  Similarity=0.194  Sum_probs=92.5

Q ss_pred             CcccCHHHHHHHHhC-CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635          270 SGDLSPKSTLELLRG-KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       270 ~~~ISp~El~elL~~-~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      ...|+++++.+++++ +++.+|||||++.||..||||||+        |+|+.++.....   .+..++    .. .+ .
T Consensus        22 ~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi--------nip~~~l~~~~~---~~~~~~----~~-~~-~   84 (139)
T 3d1p_A           22 IQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASI--------NVPYRSHPDAFA---LDPLEF----EK-QI-G   84 (139)
T ss_dssp             CEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCE--------ECCTTTCTTGGG---SCHHHH----HH-HH-S
T ss_pred             cceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcE--------EcCHHHhhhhcc---CCHHHH----HH-HH-h
Confidence            357999999999853 357899999999999999999999        999888754321   110000    00 00 1


Q ss_pred             hhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                      ..+++++++||+||++|.||..+++.|+++||++|++|+|||.+|.++|+|+..
T Consensus        85 ~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           85 IPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             ccCCCCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            123567899999999999999999999999999999999999999999999864

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.83  E-value=1.1e-20  Score=173.09  Aligned_cols=105  Identities=16%  Similarity=0.182  Sum_probs=91.5

Q ss_pred             cccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhh-hHHhhhcCCccchhhHHHHHHhh
Q 008635          271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG-SVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       271 ~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~-~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      ..|+++++.+++.++ ++++|||||++.||..||||||+        |+|+.++.. .+.                    
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAi--------nip~~~l~~~~~~--------------------   67 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAI--------SIPGNKINEDTTK--------------------   67 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCE--------ECCGGGCSTTTTT--------------------
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCE--------ECCHHHHhHHHHh--------------------
Confidence            368999999998643 37899999999999999999999        999988763 222                    


Q ss_pred             hhccCCCcEEEEEeCCC--hhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCcc
Q 008635          349 LKIVQDRSKVIVMDADG--TRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSE  406 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG--~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~  406 (558)
                        .++++++||+||++|  .||..+++.|+.+|| +|++|+||+.+|+++|+|++...+.
T Consensus        68 --~l~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~~~~~  124 (144)
T 3nhv_A           68 --RLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEGTLGA  124 (144)
T ss_dssp             --TCCTTSEEEEECSCTTCCHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBSSSGG
T ss_pred             --hCCCCCeEEEEECCCCccHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccCCCCC
Confidence              234789999999999  699999999999999 6999999999999999999986553

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.82  E-value=7.6e-21  Score=170.19  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=87.8

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++++.++++  ++.+|||||++.||..||||||+        |||+..+...  ....+.     .+..   ..+
T Consensus        17 ~~~is~~e~~~~l~--~~~~lIDvR~~~e~~~ghIpgAi--------nip~~~~~~~--~~~~~~-----~~~~---~~~   76 (129)
T 1tq1_A           17 PSSVSVTVAHDLLL--AGHRYLDVRTPEEFSQGHACGAI--------NVPYMNRGAS--GMSKNT-----DFLE---QVS   76 (129)
T ss_dssp             CEEEEHHHHHHHHH--HTCCEEEESCHHHHHHCCBTTBE--------ECCSCCCSTT--TCCCTT-----THHH---HHT
T ss_pred             CcccCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCcE--------ECcHhhcccc--cccCCH-----HHHH---HHH
Confidence            34799999999985  57899999999999999999999        9998443211  000000     0000   011


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCcee
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIK  401 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~  401 (558)
                      ..++++++||+||++|.||..+++.|+++||++|++|+|||.+|..+|+|++
T Consensus        77 ~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  128 (129)
T 1tq1_A           77 SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  128 (129)
T ss_dssp             TTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             hhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCC
Confidence            2245789999999999999999999999999999999999999999999986

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.82  E-value=1.2e-20  Score=167.91  Aligned_cols=102  Identities=17%  Similarity=0.266  Sum_probs=89.9

Q ss_pred             cccCHHHHHHHHhCC-CCcEEEEeCChhhh-hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635          271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       271 ~~ISp~El~elL~~~-e~avLIDVRsp~Ef-~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      ..|+++++.+++.++ ++.+|||||++.|| ..||||||+        |||+.++...+.++                  
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~--------nip~~~l~~~~~~l------------------   68 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAI--------AMPAKDLATRIGEL------------------   68 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCE--------ECCHHHHHHHGGGS------------------
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCE--------ECCHHHHHHHHhcC------------------
Confidence            369999999998643 35899999999998 999999999        99999887665443                  


Q ss_pred             hhccCCCcEEEEEeCCChh--HHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecC
Q 008635          349 LKIVQDRSKVIVMDADGTR--SKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~R--S~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                          +++++||+||++|.|  |..+++.|+++||+ |++|+||+.+|+.+|+|+.+.
T Consensus        69 ----~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~~  120 (124)
T 3flh_A           69 ----DPAKTYVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEHH  120 (124)
T ss_dssp             ----CTTSEEEEECSSSSCSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC-
T ss_pred             ----CCCCeEEEEeCCCCchHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCcc
Confidence                378999999999998  89999999999996 999999999999999999774

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.81  E-value=5.1e-21  Score=162.01  Aligned_cols=93  Identities=20%  Similarity=0.237  Sum_probs=77.3

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++++.++++  ++.+|||||++.||+.+|||||+        |+|+.++...+.+                     
T Consensus         2 ~~is~~~l~~~~~--~~~~liDvR~~~e~~~ghi~gAi--------~ip~~~l~~~~~~---------------------   50 (94)
T 1wv9_A            2 RKVRPEELPALLE--EGVLVVDVRPADRRSTPLPFAAE--------WVPLEKIQKGEHG---------------------   50 (94)
T ss_dssp             CEECGGGHHHHHH--TTCEEEECCCC--CCSCCSSCCE--------ECCHHHHTTTCCC---------------------
T ss_pred             CcCCHHHHHHHHH--CCCEEEECCCHHHHhcccCCCCE--------ECCHHHHHHHHHh---------------------
Confidence            3589999999985  37899999999999999999999        9999887664322                     


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG  397 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG  397 (558)
                       +++ ++||+||++|.||..+++.|+++||+ |++|+||+.+|+++|
T Consensus        51 -l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           51 -LPR-RPLLLVCEKGLLSQVAALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             -CCS-SCEEEECSSSHHHHHHHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             -CCC-CCEEEEcCCCChHHHHHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence             247 89999999999999999999999998 999999999998875

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.80  E-value=4e-20  Score=168.96  Aligned_cols=118  Identities=27%  Similarity=0.405  Sum_probs=87.5

Q ss_pred             CCcccCHHHHHHHHhCCCCcEEEEeCChhhhhh-cCC------CcccccccccccCCCchhhhhhHHhhhcCCccchhhH
Q 008635          269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRER-DGI------PDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL  341 (558)
Q Consensus       269 ~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~-GHI------PGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l  341 (558)
                      |...|+++++.+++.++++.+|||||++.||.. |||      |||+        |+|+.++...   .  .     ..+
T Consensus         3 ~~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv--------~ip~~~~~~~---~--~-----~~~   64 (148)
T 2fsx_A            3 YAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVV--------YVEWATSDGT---H--N-----DNF   64 (148)
T ss_dssp             CSEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCE--------ECCSBCTTSC---B--C-----TTH
T ss_pred             ccccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcE--------Eeeeeccccc---c--C-----HHH
Confidence            556799999999986446789999999999997 999      9999        9998761100   0  0     000


Q ss_pred             HHHHHhhh--hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccH------------HHHHHcCCceecCC
Q 008635          342 TAAVIRNL--KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGF------------QSWVKEGLRIKELK  404 (558)
Q Consensus       342 ~aa~i~~L--kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~------------~aWkaAGLPV~~~~  404 (558)
                      .......+  .+++++++|||||++|.||..+++.|+.+||++|++|+|||            .+|+++|+|++...
T Consensus        65 ~~~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~~~  141 (148)
T 2fsx_A           65 LAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQGR  141 (148)
T ss_dssp             HHHHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEECC-
T ss_pred             HHHHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCCccc
Confidence            00000001  12357899999999999999999999999999999999999            79999999998754

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.79  E-value=3.2e-20  Score=161.84  Aligned_cols=99  Identities=20%  Similarity=0.288  Sum_probs=85.2

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      .|+++++     ++++.+|||||++.||+.||||||+        |+|+.++...+.+..                    
T Consensus         6 ~is~~el-----~~~~~~liDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~~--------------------   52 (110)
T 2k0z_A            6 AISLEEV-----NFNDFIVVDVRELDEYEELHLPNAT--------LISVNDQEKLADFLS--------------------   52 (110)
T ss_dssp             EEETTTC-----CGGGSEEEEEECHHHHHHSBCTTEE--------EEETTCHHHHHHHHH--------------------
T ss_pred             eeCHHHh-----ccCCeEEEECCCHHHHhcCcCCCCE--------EcCHHHHHHHHHhcc--------------------
Confidence            4666664     2357899999999999999999999        999998877654321                    


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      ++++++||+||++|.||..+++.|+.+||++ ++|+||+.+|.++|+|++.+.
T Consensus        53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~p~~~~~  104 (110)
T 2k0z_A           53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVYDFEKYGFRMVYDD  104 (110)
T ss_dssp             SCSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGGGTTTTTCCCBCCC
T ss_pred             cCCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHHHHHHCCCcEecCC
Confidence            2478999999999999999999999999999 999999999999999998754

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.79  E-value=1.4e-19  Score=159.07  Aligned_cols=116  Identities=17%  Similarity=0.156  Sum_probs=87.1

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      .|+++++.+++.++++.+|||||++.||+.||||||+        |+|+.++.....++...   +...+..  ...-.+
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~~---~~~~l~~--~~~~~~   68 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHAL--------HIPLKHLERRDAESLKL---LKEAIWE--EKQGTQ   68 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSE--------ECCHHHHHTTCHHHHHH---HHHHHHH--HHTTC-
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCce--------eCChHHHhhhhhhhHHH---HHHHHhh--hccccc
Confidence            5899999999865456899999999999999999999        99998887654432110   0000000  000012


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHc------CCCcEEEEcccHHHHHHcCCce
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKL------GVMVTFLVQGGFQSWVKEGLRI  400 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~------GfknVy~LdGG~~aWkaAGLPV  400 (558)
                      .+++++||+||++|.||..+++.|+++      ||.+|++|+|||.+|.++..|.
T Consensus        69 ~~~~~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~  123 (127)
T 3i2v_A           69 EGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGT  123 (127)
T ss_dssp             --CCEEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTT
T ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCC
Confidence            235679999999999999999999998      6889999999999999877653

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.79  E-value=7.1e-20  Score=164.88  Aligned_cols=114  Identities=19%  Similarity=0.186  Sum_probs=90.0

Q ss_pred             CCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCC-------CcccccccccccCCCchhhhh--hHHhhhcCCccch
Q 008635          268 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGI-------PDLRRGARFRYASVYLPEVGG--SVKKLLRGGRELD  338 (558)
Q Consensus       268 G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHI-------PGAv~a~~~~~~nIPL~eL~~--~l~eL~~~~~~L~  338 (558)
                      +....|+++++.+++.++++++|||||++.||+.+|+       |||+        |||+.++..  .+.++..      
T Consensus         2 ~~~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~--------~ip~~~~~~~~~~~~l~~------   67 (134)
T 1vee_A            2 SSGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAV--------STVYNGEDKPGFLKKLSL------   67 (134)
T ss_dssp             CCSCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCE--------ECCCCGGGHHHHHHHHHT------
T ss_pred             CCCCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceE--------EeecccccChhHHHHHHH------
Confidence            3456799999999985346789999999999986444       6899        999876521  1111110      


Q ss_pred             hhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccH---HHHHHcCCceecCCc
Q 008635          339 DTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGF---QSWVKEGLRIKELKS  405 (558)
Q Consensus       339 ~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~---~aWkaAGLPV~~~~~  405 (558)
                                ....+++++|||||++|.||..|++.|+++||++|++|.|||   .+|+++|+|++....
T Consensus        68 ----------~~~~~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~~~~  127 (134)
T 1vee_A           68 ----------KFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKK  127 (134)
T ss_dssp             ----------TCSCGGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEECCCC
T ss_pred             ----------HhCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCCCCC
Confidence                      000147899999999999999999999999999999999999   789999999988654

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.77  E-value=9.5e-20  Score=168.15  Aligned_cols=109  Identities=20%  Similarity=0.315  Sum_probs=92.3

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++++.+++ ++++.+|||||+++||+.||||||+        |||+.++...+.++..                 
T Consensus        27 ~~~Is~~el~~~l-~~~~~~lIDvR~~~ey~~ghIpgAi--------nip~~~l~~~~~~l~~-----------------   80 (152)
T 1t3k_A           27 ISYITSTQLLPLH-RRPNIAIIDVRDEERNYDGHIAGSL--------HYASGSFDDKISHLVQ-----------------   80 (152)
T ss_dssp             SEEECTTTTTTCC-CCTTEEEEEESCSHHHHSSCCCSSE--------EECCSSSSTTHHHHHH-----------------
T ss_pred             CceECHHHHHHHh-cCCCEEEEECCChhhccCccCCCCE--------ECCHHHHHHHHHHHHH-----------------
Confidence            3579999998877 3467899999999999999999999        9999888776655432                 


Q ss_pred             hccCCCcEEEEEeC-CChhHHHHHHHHH--------HcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          350 KIVQDRSKVIVMDA-DGTRSKGIARSLR--------KLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       350 kgl~kdk~VVVyC~-sG~RS~~AA~~L~--------~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                       .++++++||+||+ +|.|+..+++.|.        .+||++|++|+|||.+|+++|+|++...+
T Consensus        81 -~~~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~  144 (152)
T 1t3k_A           81 -NVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE  144 (152)
T ss_dssp             -TCCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSC
T ss_pred             -hcCCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccCCC
Confidence             1247889999999 9999999998875        38999999999999999999999987544

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.77  E-value=6.1e-19  Score=155.82  Aligned_cols=113  Identities=18%  Similarity=0.267  Sum_probs=79.7

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHH--hhhcCCcc----------ch
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK--KLLRGGRE----------LD  338 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~--eL~~~~~~----------L~  338 (558)
                      ..|+++++.+    +++.+|||||++.||..||||||+        |+|+.++.....  .+......          ..
T Consensus         5 ~~i~~~el~~----~~~~~iiDvR~~~e~~~ghIpgA~--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (134)
T 3g5j_A            5 SVIKIEKALK----LDKVIFVDVRTEGEYEEDHILNAI--------NMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVS   72 (134)
T ss_dssp             CEECHHHHTT----CTTEEEEECSCHHHHHHCCCTTCE--------ECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHG
T ss_pred             cccCHHHHHh----cCCcEEEEcCCHHHHhcCCCCCCE--------EcCccchhhhhcccceeeecChhHHHhccccccc
Confidence            4688888654    468999999999999999999999        999866542210  00000000          00


Q ss_pred             hhHHHHHHhhhhccCCC-cEEEEEe-CCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635          339 DTLTAAVIRNLKIVQDR-SKVIVMD-ADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG  397 (558)
Q Consensus       339 ~~l~aa~i~~Lkgl~kd-k~VVVyC-~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG  397 (558)
                      ..+ ......+..++++ ++||+|| ++|.||..+++.|+.+|| +|++|+|||.+|++..
T Consensus        73 ~~~-~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~~  131 (134)
T 3g5j_A           73 YKL-KDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNFV  131 (134)
T ss_dssp             GGH-HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHHH
T ss_pred             ccH-HHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHHh
Confidence            000 0111122234567 9999999 589999999999999999 9999999999998753

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.77  E-value=3.9e-19  Score=147.53  Aligned_cols=84  Identities=18%  Similarity=0.211  Sum_probs=73.5

Q ss_pred             CcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCCh
Q 008635          287 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT  366 (558)
Q Consensus       287 ~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~  366 (558)
                      +++|||||++.||+.+|||||+        |+|+.++...+.++.                    .+++++||+||++|.
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~~l~--------------------~~~~~~ivv~C~~g~   52 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIATAV--------------------PDKNDTVKVYCNAGR   52 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCE--------ECCHHHHHHHHHHHC--------------------CCTTSEEEEEESSSH
T ss_pred             CCEEEECCCHHHHHhCCCCCCE--------EcCHHHHHHHHHHhC--------------------CCCCCcEEEEcCCCc
Confidence            4689999999999999999999        999999887766552                    137899999999999


Q ss_pred             hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          367 RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       367 RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                      ||..+++.|+++||++|+++ |||.+|   +.|+++
T Consensus        53 rs~~aa~~L~~~G~~~v~~l-GG~~~w---~~~~~~   84 (85)
T 2jtq_A           53 QSGQAKEILSEMGYTHVENA-GGLKDI---AMPKVK   84 (85)
T ss_dssp             HHHHHHHHHHHTTCSSEEEE-EETTTC---CSCEEE
T ss_pred             hHHHHHHHHHHcCCCCEEec-cCHHHH---hccccc
Confidence            99999999999999999999 999999   445543

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.75  E-value=2.1e-18  Score=170.85  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=94.3

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++++.+++. +++.+|||||++.||..+|||||+        |+|+.++.........  ........+..+..+
T Consensus         8 ~~~is~~~l~~~l~-~~~~~iiDvR~~~ey~~ghIpgA~--------~ip~~~l~~~~~~~~~--~~~~~~~~~~~~~~~   76 (271)
T 1e0c_A            8 PLVIEPADLQARLS-APELILVDLTSAARYAEGHIPGAR--------FVDPKRTQLGQPPAPG--LQPPREQLESLFGEL   76 (271)
T ss_dssp             CSEECHHHHHTTTT-CTTEEEEECSCHHHHHHCBSTTCE--------ECCGGGGSCCCTTCTT--SCCCHHHHHHHHHHH
T ss_pred             CceeeHHHHHHhcc-CCCeEEEEcCCcchhhhCcCCCCE--------ECCHHHhccCCCCCCC--CCCCHHHHHHHHHHc
Confidence            34799999999884 467899999999999999999999        9998876543110000  000000111111111


Q ss_pred             hccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          350 KIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                       +++++++|||||++|. ||.++++.|+.+||++|++|+||+.+|+.+|+|++...+
T Consensus        77 -gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~~~  132 (271)
T 1e0c_A           77 -GHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELP  132 (271)
T ss_dssp             -TCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             -CCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCCCC
Confidence             3568999999999998 999999999999999999999999999999999987544

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.74  E-value=2.8e-18  Score=169.94  Aligned_cols=115  Identities=13%  Similarity=0.075  Sum_probs=91.4

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhh--------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA  343 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~--------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a  343 (558)
                      .|+++++.+++. +++.+|||||++.||.        .||||||+        |+|+.++......+... .++...+. 
T Consensus       148 ~i~~~~l~~~l~-~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~--------~ip~~~~~~~~~~~~~~-~~l~~~~~-  216 (271)
T 1e0c_A          148 TASRDYLLGRLG-AADLAIWDARSPQEYRGEKVLAAKGGHIPGAV--------NFEWTAAMDPSRALRIR-TDIAGRLE-  216 (271)
T ss_dssp             BCCHHHHHHHTT-CTTEEEEECSCHHHHTTSSCCSSSCSBCTTCE--------ECCGGGGEEGGGTTEEC-TTHHHHHH-
T ss_pred             cccHHHHHHHhc-CCCcEEEEcCChhhcCCccCCCCcCCcCCCce--------eccHHHhCCCCCCCCCH-HHHHHHHH-
Confidence            479999999884 4678999999999999        99999999        99998876432222111 12211111 


Q ss_pred             HHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHc-CCceec
Q 008635          344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE-GLRIKE  402 (558)
Q Consensus       344 a~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA-GLPV~~  402 (558)
                           -.+++++++||+||++|.||..+++.|+.+||++|++|+|||.+|.+. |+|+++
T Consensus       217 -----~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          217 -----ELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             -----HTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             -----HcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCcC
Confidence                 114568999999999999999999999999999999999999999998 999863

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.73  E-value=5.9e-18  Score=173.35  Aligned_cols=118  Identities=10%  Similarity=0.124  Sum_probs=89.3

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhh-hhhcCCCcccccccccccCCCchh-hhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDL-RERDGIPDLRRGARFRYASVYLPE-VGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~E-f~~GHIPGAv~a~~~~~~nIPL~e-L~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      .|+++++.+++. +++.+|||||++.| |..||||||+        |+|+.. +........++...+.     ..+.. 
T Consensus        41 ~is~~~l~~~l~-~~~~~iiDvR~~~e~y~~gHIpGAi--------~ip~~~~~~~~~~~~~~~~~~~~-----~~l~~-  105 (318)
T 3hzu_A           41 LVTADWLSAHMG-APGLAIVESDEDVLLYDVGHIPGAV--------KIDWHTDLNDPRVRDYINGEQFA-----ELMDR-  105 (318)
T ss_dssp             EECHHHHHHHTT-CTTEEEEECCSSTTSGGGCBCTTEE--------ECCHHHHHBCSSSSSBCCHHHHH-----HHHHH-
T ss_pred             eecHHHHHHhcc-CCCEEEEECCCChhHHhcCcCCCCe--------EeCchhhhccCcccCCCCHHHHH-----HHHHH-
Confidence            599999999984 56799999999876 9999999999        999742 2110000000000111     11111 


Q ss_pred             hccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          350 KIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      .+++++++|||||++|. ||.+++++|+.+||++|++|+||+.+|+++|+|++...
T Consensus       106 lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~  161 (318)
T 3hzu_A          106 KGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLDV  161 (318)
T ss_dssp             TTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCCC
T ss_pred             cCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccCC
Confidence            13568999999999988 99999999999999999999999999999999998753

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.72  E-value=9.1e-18  Score=167.29  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=92.5

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeC----------ChhhhhhcCCCcccccccccccCCCchhhhhhHHh---hhcCCccc
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVR----------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKK---LLRGGREL  337 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVR----------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~e---L~~~~~~L  337 (558)
                      ..|+++++.+++. +++.+|||||          ++.||..||||||+        |+|+.++......   ..++... 
T Consensus         4 ~~is~~~l~~~l~-~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~~~~~~~~~~-   73 (280)
T 1urh_A            4 WFVGADWLAEHID-DPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAV--------FFDIEALSDHTSPLPHMLPRPET-   73 (280)
T ss_dssp             CEECHHHHHTTTT-CTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCE--------ECCGGGGSCSSSSSSSCCCCHHH-
T ss_pred             ceeeHHHHHHhcC-CCCeEEEEeeccCCcccccchhhhhhhCcCCCCE--------ECCHHHhcCCCCCCCCCCCCHHH-
Confidence            3689999999884 4689999999          78999999999999        9998766432110   0000001 


Q ss_pred             hhhHHHHHHhhhhccCCCcEEEEEeCCChh-HHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          338 DDTLTAAVIRNLKIVQDRSKVIVMDADGTR-SKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       338 ~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~R-S~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                         + ...+.. .+++++++|||||++|.| |.+++++|+.+||++|++|+||+.+|+.+|+|++...+
T Consensus        74 ---~-~~~~~~-~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  137 (280)
T 1urh_A           74 ---F-AVAMRE-LGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAV  137 (280)
T ss_dssp             ---H-HHHHHH-TTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCC
T ss_pred             ---H-HHHHHH-cCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCCCC
Confidence               1 111111 135689999999999998 99999999999999999999999999999999988544

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.72  E-value=8.2e-18  Score=155.03  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=88.0

Q ss_pred             cccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhH-HhhhcCCccchhhHHHH
Q 008635          271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-KKLLRGGRELDDTLTAA  344 (558)
Q Consensus       271 ~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l-~eL~~~~~~L~~~l~aa  344 (558)
                      ..|+++++.++++++     ++.+|||||++.||..||||||+        |+|+.++.... .+..    .+       
T Consensus        23 ~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~----~~-------   83 (161)
T 1c25_A           23 KYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAV--------NLHMEEEVEDFLLKKP----IV-------   83 (161)
T ss_dssp             CEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCE--------ECCSHHHHHHHTTTSC----CC-------
T ss_pred             ceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcE--------eCChhHHHHHHHhhhh----hc-------
Confidence            469999999999532     36899999999999999999999        99998775432 1100    00       


Q ss_pred             HHhhhhccCCCcEE--EEEeC-CChhHHHHHHHHHHc----------CCCcEEEEcccHHHHHHcCCceecCC
Q 008635          345 VIRNLKIVQDRSKV--IVMDA-DGTRSKGIARSLRKL----------GVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       345 ~i~~Lkgl~kdk~V--VVyC~-sG~RS~~AA~~L~~~----------GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                             .+++++|  |+||+ +|.||..+++.|++.          ||++|++|+|||.+|.+++.|+..+.
T Consensus        84 -------~~~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~~~  149 (161)
T 1c25_A           84 -------PTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPP  149 (161)
T ss_dssp             -------CCTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEESS
T ss_pred             -------cCCCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccCCC
Confidence                   1357775  67899 999999999999864          99999999999999999999998754

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.71  E-value=8.3e-18  Score=153.54  Aligned_cols=123  Identities=18%  Similarity=0.189  Sum_probs=86.7

Q ss_pred             cccCHHHHHHHHhC-CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhh-hhhHHhhhcCCccchhhHHHHHHhh
Q 008635          271 GDLSPKSTLELLRG-KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV-GGSVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       271 ~~ISp~El~elL~~-~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL-~~~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      ..|+++++.+++++ +++.+|||||++.||..||||||+        |||+.++ ..++..   ....+.. +.......
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAi--------nip~~~l~~~~~~~---~~~~~~~-ll~~~~~~   71 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAI--------NINCSKLMKRRLQQ---DKVLITE-LIQHSAKH   71 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCE--------ECCCCHHHHHHHHT---TSSCHHH-HHHHSCSS
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCe--------eeChHHHHHhhhhc---CCcCHHH-hcCchhhh
Confidence            46899999999953 357899999999999999999999        9999887 332220   0000000 00000000


Q ss_pred             hhccCCCcEEEEEeCCChhHHHH------HHHHHH--cCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          349 LKIVQDRSKVIVMDADGTRSKGI------ARSLRK--LGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~RS~~A------A~~L~~--~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      ..+++++++|||||++|.|+..+      ++.|+.  .||++|++|+|||.+|.+.+.++....+
T Consensus        72 ~~~~~~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~~~~~~  136 (153)
T 2vsw_A           72 KVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEGKS  136 (153)
T ss_dssp             CCCCCTTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGGEEC--
T ss_pred             hhccCCCCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhhhcCCC
Confidence            01245789999999999988766      577774  4999999999999999998777766544

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.71  E-value=1.4e-17  Score=165.49  Aligned_cols=119  Identities=14%  Similarity=0.179  Sum_probs=88.7

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCC-hhhhhhcCCCcccccccccccCCCchhhhhh-HHhhhcCCccchhhHHHHHHhhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRH-EDLRERDGIPDLRRGARFRYASVYLPEVGGS-VKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRs-p~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~-l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      .|+++++.+++. +++.+|||||+ +.||..||||||+        |+|+..+... ..........+.     ..+.. 
T Consensus         7 ~is~~~l~~~l~-~~~~~liDvR~~~~ey~~ghIpgA~--------~ip~~~~~~~~~~~~~~~~~~~~-----~~~~~-   71 (277)
T 3aay_A            7 LVSADWAESNLH-APKVVFVEVDEDTSAYDRDHIAGAI--------KLDWRTDLQDPVKRDFVDAQQFS-----KLLSE-   71 (277)
T ss_dssp             EECHHHHHTTTT-CTTEEEEEEESSSHHHHHCBSTTCE--------EEETTTTTBCSSSSSBCCHHHHH-----HHHHH-
T ss_pred             eEcHHHHHHHhC-CCCEEEEEcCCChhhHhhCCCCCcE--------EecccccccCCCCCCCCCHHHHH-----HHHHH-
Confidence            589999998884 45789999998 8999999999999        8887643210 000000000011     01111 


Q ss_pred             hccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          350 KIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      .+++++++|||||++|. +|.+++++|+.+||++|++|+||+.+|+++|+|++...+
T Consensus        72 ~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  128 (277)
T 3aay_A           72 RGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPV  128 (277)
T ss_dssp             HTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             cCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccCCC
Confidence            13568899999999986 799999999999999999999999999999999987543

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.71  E-value=1.1e-17  Score=166.92  Aligned_cols=118  Identities=15%  Similarity=0.157  Sum_probs=89.1

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeC-ChhhhhhcCCCcccccccccccCCCchhhhh-hHHhhhcCCccchhhHHHHHHhhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVR-HEDLRERDGIPDLRRGARFRYASVYLPEVGG-SVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVR-sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~-~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      .|+++++.+++. +++.+||||| ++.||..||||||+        |+|+..... .......+.    ..+. ..+.. 
T Consensus         9 ~is~~~l~~~l~-~~~~~liDvR~~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~~~~----~~~~-~~~~~-   73 (285)
T 1uar_A            9 LVSTDWVQEHLE-DPKVRVLEVDEDILLYDTGHIPGAQ--------KIDWQRDFWDPVVRDFISE----EEFA-KLMER-   73 (285)
T ss_dssp             EECHHHHHTTTT-CTTEEEEEECSSTTHHHHCBCTTCE--------EECHHHHHBCSSSSSBCCH----HHHH-HHHHH-
T ss_pred             eEcHHHHHHhcC-CCCEEEEEcCCCcchhhcCcCCCCE--------ECCchhhccCCcccCCCCH----HHHH-HHHHH-
Confidence            689999999884 4578999999 78999999999999        999764211 100000000    0011 11111 


Q ss_pred             hccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          350 KIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      .+++++++|||||++|. +|.++++.|+.+||++|++|+||+.+|+.+|+|++...
T Consensus        74 ~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  129 (285)
T 1uar_A           74 LGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEV  129 (285)
T ss_dssp             TTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCC
T ss_pred             cCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCCC
Confidence            13568999999999998 79999999999999999999999999999999998743

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.70  E-value=3.3e-17  Score=178.74  Aligned_cols=107  Identities=18%  Similarity=0.186  Sum_probs=95.5

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++++.+++.++++.+|||||++.||..+|||||+        |+|+++|...+..+..                  
T Consensus         7 ~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv--------~ip~~~~~~~~~~l~~------------------   60 (539)
T 1yt8_A            7 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAA--------NLPLSRLELEIHARVP------------------   60 (539)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCE--------ECCGGGHHHHHHHHSC------------------
T ss_pred             cccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCE--------ECCHHHHHHHHHhhCC------------------
Confidence            46999999999864457999999999999999999999        9999988877665532                  


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                        +++++|||||++|.||.+++++|+.+||++|++|+||+.+|+++|+|++.+.+
T Consensus        61 --~~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~  113 (539)
T 1yt8_A           61 --RRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRDVN  113 (539)
T ss_dssp             --CTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCSSS
T ss_pred             --CCCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccCCc
Confidence              26899999999999999999999999999999999999999999999987543

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.70  E-value=8.9e-18  Score=167.37  Aligned_cols=114  Identities=22%  Similarity=0.222  Sum_probs=80.9

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhh-----------hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDT  340 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef-----------~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~  340 (558)
                      .|+++++.+++. +++.+|||||++.||           ..||||||+        |||+.++...  ...++...+   
T Consensus       153 ~i~~~e~~~~~~-~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~--------nip~~~~~~~--~~~~~~~~l---  218 (280)
T 1urh_A          153 VVKVTDVLLASH-ENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDEL---  218 (280)
T ss_dssp             BCCHHHHHHHHH-HTCSEEEECSCHHHHSSCCCC----CCSSSCTTCE--------ECCGGGGBSS--SSBCCHHHH---
T ss_pred             EEcHHHHHHHhc-CCCcEEEeCCchhhcccccCCCCCCCcCccCCCce--------EeeHHHhhcC--CccCCHHHH---
Confidence            389999999885 357899999999999           689999999        9999887651  000000000   


Q ss_pred             HHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceec
Q 008635          341 LTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKE  402 (558)
Q Consensus       341 l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~  402 (558)
                       .+ .+. -.+++++++||+||++|.||..++..|+.+||++|++|+|||.+|.+ .++|+++
T Consensus       219 -~~-~~~-~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~  278 (280)
T 1urh_A          219 -DA-IFF-GRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEP  278 (280)
T ss_dssp             -HH-HHH-TTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-----------
T ss_pred             -HH-HHH-HcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCcee
Confidence             00 000 11356889999999999999999999999999999999999999987 5999875

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.70  E-value=1.2e-17  Score=168.28  Aligned_cols=122  Identities=20%  Similarity=0.301  Sum_probs=92.8

Q ss_pred             CCcccCHHHHHHHHhCC---CCcEEEEeC--------ChhhhhhcCCCcccccccccccCCCchhhhhhHH---hhhcCC
Q 008635          269 YSGDLSPKSTLELLRGK---ENAVLIDVR--------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK---KLLRGG  334 (558)
Q Consensus       269 ~~~~ISp~El~elL~~~---e~avLIDVR--------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~---eL~~~~  334 (558)
                      |...|+++++.+++.+.   ++.+|||||        ++.||..||||||+        |+|+.++.....   ...+..
T Consensus         6 ~~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi--------~ip~~~l~~~~~~~~~~lp~~   77 (296)
T 1rhs_A            6 YRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGAS--------FFDIEECRDKASPYEVMLPSE   77 (296)
T ss_dssp             CCSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCE--------ECCTTTSSCTTSSSSSCCCCH
T ss_pred             cCceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCE--------EeCHHHhcCCCCCCCCCCCCH
Confidence            34579999999998642   578999999        68999999999999        899877654311   011110


Q ss_pred             ccchhhHHHHHHhhhhccCCCcEEEEEeCC--Chh-HHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          335 RELDDTLTAAVIRNLKIVQDRSKVIVMDAD--GTR-SKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       335 ~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~s--G~R-S~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      ..    + +..+.. .+++++++|||||++  |.+ +.+++++|+.+||++|++|+||+.+|+++|+|++...
T Consensus        78 ~~----~-~~~l~~-lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~  144 (296)
T 1rhs_A           78 AG----F-ADYVGS-LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEP  144 (296)
T ss_dssp             HH----H-HHHHHH-TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSC
T ss_pred             HH----H-HHHHHH-cCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccccCC
Confidence            01    1 111111 145688999999999  876 8899999999999999999999999999999998763

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.69  E-value=1.5e-17  Score=148.04  Aligned_cols=121  Identities=17%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             ccCHHHHHH--------HHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635          272 DLSPKSTLE--------LLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA  343 (558)
Q Consensus       272 ~ISp~El~e--------lL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a  343 (558)
                      .|+++++.+        ++ ++++.+|||||++.||..||||||+        |+|++++..... +......+...+..
T Consensus         2 ~Is~~~l~~~l~~~~~~~l-~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~-~~~~~~~~~~~~~~   71 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHL-PSQGPVIIDCRPFMEYNKSHIQGAV--------HINCADKISRRR-LQQGKITVLDLISC   71 (142)
T ss_dssp             EECHHHHHHHHHC-----------CEEEECSCHHHHHHEEETTCE--------ECCCSSHHHHHH-HHTTSSCHHHHHHT
T ss_pred             ccCHHHHHHHHHhcccccC-CCCCCEEEEeCCHHHhhhhhccCcc--------ccCccHHHHHHH-hhcCCcchhhhCCC
Confidence            488999988        44 2457899999999999999999999        999887543211 10010011100000


Q ss_pred             H-HHhhhhccCCCcEEEEEeCCChhH---------HHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          344 A-VIRNLKIVQDRSKVIVMDADGTRS---------KGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       344 a-~i~~Lkgl~kdk~VVVyC~sG~RS---------~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      . ....+++. ++++||+||++|.|+         ..++..|...|| +|++|+|||.+|.++|.|+..+.
T Consensus        72 ~~~~~~~~~~-~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~~~~  140 (142)
T 2ouc_A           72 REGKDSFKRI-FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLCDNS  140 (142)
T ss_dssp             TSCTTHHHHH-HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGEEEC
T ss_pred             hhhhHHHhcc-CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhhccc
Confidence            0 00001111 268999999999874         567888999999 99999999999999999987643

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.69  E-value=2.6e-17  Score=151.53  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             cccCHHHHHHHHhCC---CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhh-hHHhhhcCCccchhhHHHHHH
Q 008635          271 GDLSPKSTLELLRGK---ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG-SVKKLLRGGRELDDTLTAAVI  346 (558)
Q Consensus       271 ~~ISp~El~elL~~~---e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~-~l~eL~~~~~~L~~~l~aa~i  346 (558)
                      ..|+++++.+++.++   ++.+|||||++ ||..||||||+        |+|+.++.. .+.++..           .  
T Consensus         5 ~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAi--------nip~~~l~~~~~~~l~~-----------~--   62 (152)
T 2j6p_A            5 TYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSI--------NMPTISCTEEMYEKLAK-----------T--   62 (152)
T ss_dssp             EEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCE--------ECCTTTCCHHHHHHHHH-----------H--
T ss_pred             CccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcE--------ECChhHhhHHHHHHHHH-----------H--
Confidence            468999999998532   37899999999 99999999999        999887654 3322210           0  


Q ss_pred             hhhhccCCCcEEEEEe-CCChhHHHHH----HHHHHcCC--CcEEEEcccHHHHHHcCCceecC
Q 008635          347 RNLKIVQDRSKVIVMD-ADGTRSKGIA----RSLRKLGV--MVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       347 ~~Lkgl~kdk~VVVyC-~sG~RS~~AA----~~L~~~Gf--knVy~LdGG~~aWkaAGLPV~~~  403 (558)
                        +.. +..+.||+|| ++|.|+..++    +.|+++||  ++|++|+|||.+|.++|.++..+
T Consensus        63 --l~~-~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~~~  123 (152)
T 2j6p_A           63 --LFE-EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVRPD  123 (152)
T ss_dssp             --HHH-TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTCGG
T ss_pred             --hcc-cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCCCC
Confidence              000 1234678889 7999999888    78888997  59999999999999999987653

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.69  E-value=3.1e-17  Score=153.36  Aligned_cols=109  Identities=21%  Similarity=0.277  Sum_probs=85.2

Q ss_pred             cccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh-HHhhhcCCccchhhHHHH
Q 008635          271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-VKKLLRGGRELDDTLTAA  344 (558)
Q Consensus       271 ~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~-l~eL~~~~~~L~~~l~aa  344 (558)
                      ..|+++++.+++.++     ++.+|||||++.||+.||||||+        |+|+.++... +...    ..+       
T Consensus        24 ~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAi--------nip~~~l~~~~~~~~----~~~-------   84 (175)
T 2a2k_A           24 KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAV--------NLPLERDAESFLLKS----PIA-------   84 (175)
T ss_dssp             CEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCE--------ECCSHHHHHHHHHSS----CCC-------
T ss_pred             ceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcE--------ECChhHHHHHhhhhh----hhc-------
Confidence            479999999998532     36899999999999999999999        9999887543 2110    000       


Q ss_pred             HHhhhhccCCCcEEEE--EeC-CChhHHHHHHHHHH----------cCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          345 VIRNLKIVQDRSKVIV--MDA-DGTRSKGIARSLRK----------LGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       345 ~i~~Lkgl~kdk~VVV--yC~-sG~RS~~AA~~L~~----------~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                            ..+++++|||  ||+ +|.||..+++.|++          +||++|++|+||+.+|.++|.|+..+.
T Consensus        85 ------~~~~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~~~  151 (175)
T 2a2k_A           85 ------PCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQ  151 (175)
T ss_dssp             ------C----CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEESS
T ss_pred             ------cccCCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccCCC
Confidence                  0125778744  699 99999999999986          499999999999999999999987643

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.68  E-value=2.5e-17  Score=165.98  Aligned_cols=117  Identities=16%  Similarity=0.087  Sum_probs=91.1

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhh------------hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLR------------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDD  339 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef------------~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~  339 (558)
                      .|+++++.+++. +++.+|||||++.||            ..||||||+        |||+.++...-.. .++..+   
T Consensus       161 ~i~~~e~~~~~~-~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~--------nip~~~l~~~~~~-~~~~~~---  227 (296)
T 1rhs_A          161 LKTYEQVLENLE-SKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSV--------NMPFMNFLTEDGF-EKSPEE---  227 (296)
T ss_dssp             EECHHHHHHHHH-HCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCE--------ECCGGGGBCTTSC-BCCHHH---
T ss_pred             EEcHHHHHHHhc-CCCceEEeCCchhhcccccCCcccCCCcCccCCCCE--------eecHHHhcCCCCc-CCCHHH---
Confidence            588999999885 457899999999999            789999999        9999877542110 001000   


Q ss_pred             hHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecCC
Q 008635          340 TLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKELK  404 (558)
Q Consensus       340 ~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~~  404 (558)
                       +.. .+.. .+++++++||+||++|.||..++..|+.+||++|++|+|||.+|.. .++|++.+.
T Consensus       228 -l~~-~~~~-~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~~  290 (296)
T 1rhs_A          228 -LRA-MFEA-KKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQ  290 (296)
T ss_dssp             -HHH-HHHH-TTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEEBT
T ss_pred             -HHH-HHHH-cCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCcccCC
Confidence             100 0110 1356899999999999999999999999999999999999999988 899998754

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.68  E-value=3.8e-17  Score=158.30  Aligned_cols=109  Identities=21%  Similarity=0.245  Sum_probs=88.4

Q ss_pred             CcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh-HHhhhcCCccchhhHHH
Q 008635          270 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-VKKLLRGGRELDDTLTA  343 (558)
Q Consensus       270 ~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~-l~eL~~~~~~L~~~l~a  343 (558)
                      ...|+++++.+++.++     ++.+|||||++.||..||||||+        |||+.++... +....    .+      
T Consensus        43 ~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAi--------nip~~~l~~~~~~~~~----~l------  104 (211)
T 1qb0_A           43 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAV--------NLPLERDAESFLLKSP----IA------  104 (211)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCE--------ECCSHHHHHHHHHTTT----CC------
T ss_pred             CCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCE--------ECCchHHHHHhhhhhh----hc------
Confidence            3579999999998532     36899999999999999999999        9999877543 22110    00      


Q ss_pred             HHHhhhhccCCCcEE--EEEeC-CChhHHHHHHHHHH----------cCCCcEEEEcccHHHHHHcCCceecC
Q 008635          344 AVIRNLKIVQDRSKV--IVMDA-DGTRSKGIARSLRK----------LGVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       344 a~i~~Lkgl~kdk~V--VVyC~-sG~RS~~AA~~L~~----------~GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                             ...++++|  |+||+ +|.||..+++.|+.          +||++|++|+|||.+|.++|.|+..+
T Consensus       105 -------~~~~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~~~  170 (211)
T 1qb0_A          105 -------PCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEP  170 (211)
T ss_dssp             -------CSSTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             -------cccCCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccccCC
Confidence                   01267887  88999 99999999999986          69999999999999999999998764

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.68  E-value=4.3e-17  Score=174.20  Aligned_cols=101  Identities=24%  Similarity=0.375  Sum_probs=90.7

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..++++++.+++. +++.+|||||++.||+.||||||+        |+|+.++.+.+.++                    
T Consensus       374 ~~i~~~~l~~~~~-~~~~~lvDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~~l--------------------  424 (474)
T 3tp9_A          374 ANVSPDEVRGALA-QQGLWLLDVRNVDEWAGGHLPQAH--------HIPLSKLAAHIHDV--------------------  424 (474)
T ss_dssp             EEECHHHHHHTTT-TTCCEEEECSCHHHHHHCBCTTCE--------ECCHHHHTTTGGGS--------------------
T ss_pred             cccCHHHHHHHhc-CCCcEEEECCCHHHHhcCcCCCCE--------ECCHHHHHHHHhcC--------------------
Confidence            3589999999884 468899999999999999999999        99999887765432                    


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                        +++++||+||++|.||..+++.|+.+||++|++|+|||.+|.++|+|++.
T Consensus       425 --~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          425 --PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             --CSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             --CCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence              37899999999999999999999999999999999999999999999863

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.68  E-value=1.2e-16  Score=162.41  Aligned_cols=124  Identities=18%  Similarity=0.184  Sum_probs=89.2

Q ss_pred             CcccCHHHHHHHHhCC---CCcEEEEeC---------ChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccc
Q 008635          270 SGDLSPKSTLELLRGK---ENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGREL  337 (558)
Q Consensus       270 ~~~ISp~El~elL~~~---e~avLIDVR---------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L  337 (558)
                      ...|+++++.+++.+.   ++.+|||||         ++.||..||||||+        |+|++++......+...  ..
T Consensus        21 ~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi--------~i~~~~~~~~~~~~~~~--lp   90 (302)
T 3olh_A           21 QSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAA--------FFDIDQCSDRTSPYDHM--LP   90 (302)
T ss_dssp             CCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCE--------ECCTTTSSCSSCSSSSC--CC
T ss_pred             CCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCe--------EeCHHHhcCcCCCCCCC--CC
Confidence            3469999999998642   379999999         78999999999999        88876643211110000  00


Q ss_pred             hhhHHHHHHhhhhccCCCcEEEEEeCC---ChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          338 DDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       338 ~~~l~aa~i~~Lkgl~kdk~VVVyC~s---G~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                      .....+..+.. .+++++++|||||++   +.++.+++++|+.+||++|++|+||+.+|+++|+|++...
T Consensus        91 ~~~~~~~~~~~-lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~  159 (302)
T 3olh_A           91 GAEHFAEYAGR-LGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGK  159 (302)
T ss_dssp             CHHHHHHHHHH-TTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CCSC
T ss_pred             CHHHHHHHHHH-cCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcccCC
Confidence            00001111111 135689999999964   3479999999999999999999999999999999998863

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.67  E-value=1e-16  Score=174.87  Aligned_cols=104  Identities=16%  Similarity=0.298  Sum_probs=94.3

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++++.+++. +++.+|||||++.||+.||||||+        ++|+++|...+.++                    
T Consensus       377 ~~i~~~~l~~~l~-~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~l~~~l~~l--------------------  427 (539)
T 1yt8_A          377 DTIDPTTLADWLG-EPGTRVLDFTASANYAKRHIPGAA--------WVLRSQLKQALERL--------------------  427 (539)
T ss_dssp             CEECHHHHHHHTT-STTEEEEECSCHHHHHHCBCTTCE--------ECCGGGHHHHHHHH--------------------
T ss_pred             CccCHHHHHHHhc-CCCeEEEEeCCHHHhhcCcCCCch--------hCCHHHHHHHHHhC--------------------
Confidence            4689999999984 467899999999999999999999        99999888776554                    


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                        +++++||+||++|.||..+++.|+.+||++|++|+|||.+|.++|+|++.+.+
T Consensus       428 --~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~  480 (539)
T 1yt8_A          428 --GTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGES  480 (539)
T ss_dssp             --CCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSSC
T ss_pred             --CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCcccCCC
Confidence              26889999999999999999999999999999999999999999999998644

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.66  E-value=1.5e-16  Score=158.57  Aligned_cols=116  Identities=18%  Similarity=0.191  Sum_probs=88.3

Q ss_pred             cCHHHHHHHHhC--CCCcEEEEeCChhhhh----------------hcCCCcccccccccccCCCchhhhhhHHhhhcCC
Q 008635          273 LSPKSTLELLRG--KENAVLIDVRHEDLRE----------------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGG  334 (558)
Q Consensus       273 ISp~El~elL~~--~e~avLIDVRsp~Ef~----------------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~  334 (558)
                      |+++++.++++.  ..+..|||||++.||.                .||||||+        |+|+.++...-.. .++.
T Consensus       148 i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~--------~ip~~~~~~~~~~-~~~~  218 (285)
T 1uar_A          148 AYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAK--------NIPWAKAVNPDGT-FKSA  218 (285)
T ss_dssp             ECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCE--------ECCGGGGBCTTSC-BCCH
T ss_pred             EcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCcc--------ccCHHHhcCCCCc-CCCH
Confidence            899999998830  1235799999999997                79999999        9998877532111 1110


Q ss_pred             ccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHH-HcCCCcEEEEcccHHHHH-HcCCceecC
Q 008635          335 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLR-KLGVMVTFLVQGGFQSWV-KEGLRIKEL  403 (558)
Q Consensus       335 ~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~-~~GfknVy~LdGG~~aWk-aAGLPV~~~  403 (558)
                      .+    +. ..+. -.+++++++||+||++|.||..+++.|+ .+||++|++|+|||.+|. .+|+|++.+
T Consensus       219 ~~----l~-~~~~-~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  283 (285)
T 1uar_A          219 EE----LR-ALYE-PLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKG  283 (285)
T ss_dssp             HH----HH-HHHG-GGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCS
T ss_pred             HH----HH-HHHH-HcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHhcCCCCCcccC
Confidence            00    10 1111 1135689999999999999999999999 999999999999999998 799999874

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.66  E-value=1.5e-16  Score=154.67  Aligned_cols=97  Identities=26%  Similarity=0.299  Sum_probs=80.4

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhhh----------cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHH
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT  342 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~~----------GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~  342 (558)
                      ++++++.+      +.+|||||++.||..          ||||||+        |+|+.++.... ++.          .
T Consensus       123 i~~~e~~~------~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~--------~ip~~~~~~~~-e~~----------~  177 (230)
T 2eg4_A          123 LTADEAAR------HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSK--------NAPLELFLSPE-GLL----------E  177 (230)
T ss_dssp             CCHHHHHT------CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCE--------ECCGGGGGCCT-THH----------H
T ss_pred             eCHHHHhh------CCeEEeCCCHHHcCcccCCCCCccCCCCCCcE--------EcCHHHhCChH-HHH----------H
Confidence            66666543      578999999999999          9999999        99998876431 000          0


Q ss_pred             HHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCcee
Q 008635          343 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIK  401 (558)
Q Consensus       343 aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~  401 (558)
                            -.+++++++||+||++|.||..++..|+.+| ++|++|+|||.+|.+.|+|++
T Consensus       178 ------~~~~~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~  229 (230)
T 2eg4_A          178 ------RLGLQPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTE  229 (230)
T ss_dssp             ------HHTCCTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCB
T ss_pred             ------hcCCCCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCC
Confidence                  0124578999999999999999999999999 899999999999999999986

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.66  E-value=1.6e-16  Score=160.23  Aligned_cols=103  Identities=16%  Similarity=0.237  Sum_probs=86.6

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++++.+++. +++++|||||++.||+.||||||+        |+|+.++.+....+...                .
T Consensus       122 ~~Is~~el~~ll~-~~~~vlIDVR~~~Ey~~GHIpGAi--------niP~~~~~~~~~~l~~~----------------l  176 (265)
T 4f67_A          122 TYLSPEEWHQFIQ-DPNVILLDTRNDYEYELGTFKNAI--------NPDIENFREFPDYVQRN----------------L  176 (265)
T ss_dssp             CEECHHHHHHHTT-CTTSEEEECSCHHHHHHEEETTCB--------CCCCSSGGGHHHHHHHH----------------T
T ss_pred             ceECHHHHHHHhc-CCCeEEEEeCCchHhhcCcCCCCE--------eCCHHHHHhhHHHHHHh----------------h
Confidence            4699999999984 568999999999999999999999        99998876543322100                0


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCC
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL  398 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGL  398 (558)
                      ..+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+..-
T Consensus       177 ~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~  224 (265)
T 4f67_A          177 IDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYLESIP  224 (265)
T ss_dssp             GGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHHSC
T ss_pred             hhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHHHHhcC
Confidence            113789999999999999999999999999999999999999988643

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.66  E-value=1.1e-16  Score=159.13  Aligned_cols=113  Identities=20%  Similarity=0.175  Sum_probs=84.9

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhhhh----------------cCCCcccccccccccCCCchhhhhhHHhhhcCCcc
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLRER----------------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRE  336 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef~~----------------GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~  336 (558)
                      ++++++.+++. + +. |||||++.||..                ||||||+        |+|+.++......+ ++..+
T Consensus       146 ~~~~el~~~~~-~-~~-liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~--------~ip~~~~~~~~~~~-~~~~~  213 (277)
T 3aay_A          146 AFRDEVLAAIN-V-KN-LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAI--------NVPWSRAANEDGTF-KSDEE  213 (277)
T ss_dssp             ECHHHHHHTTT-T-SE-EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCE--------ECCGGGGBCTTSCB-CCHHH
T ss_pred             cCHHHHHHhcC-C-CC-EEEeCChHHeeeeecccccccccccccCCcCCCce--------ecCHHHhcCCCCcC-CCHHH
Confidence            67899988874 2 33 999999999985                9999999        99987653211110 11011


Q ss_pred             chhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHH-cCCCcEEEEcccHHHHHH-cCCceecC
Q 008635          337 LDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRK-LGVMVTFLVQGGFQSWVK-EGLRIKEL  403 (558)
Q Consensus       337 L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~-~GfknVy~LdGG~~aWka-AGLPV~~~  403 (558)
                      +...+..      .+++++++||+||++|.||..+++.|++ +||++|++|+|||.+|.+ +|+|++.+
T Consensus       214 l~~~~~~------~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  276 (277)
T 3aay_A          214 LAKLYAD------AGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELG  276 (277)
T ss_dssp             HHHHHHH------HTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCC
T ss_pred             HHHHHHH------cCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhcCCCCCCccC
Confidence            1111100      1356899999999999999999999995 999999999999999998 99999763

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.66  E-value=2.1e-17  Score=167.98  Aligned_cols=113  Identities=13%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhh-----------hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDT  340 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef-----------~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~  340 (558)
                      .++++++.+++. +++.+|||||+++||           +.||||||+        |||+.++......+ ++..++...
T Consensus       176 ~i~~~e~~~~~~-~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAi--------niP~~~l~~~~~~~-~~~~~l~~~  245 (302)
T 3olh_A          176 IKTYEDIKENLE-SRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTV--------NIPFTDFLSQEGLE-KSPEEIRHL  245 (302)
T ss_dssp             EECHHHHHHHHH-HCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCE--------ECCGGGGBCSSSCB-CCHHHHHHH
T ss_pred             eecHHHHHHhhc-CCCcEEEecCCHHHccccccCCCcCCcCccCCCce--------ecCHHHhcCCCCcc-CCHHHHHHH
Confidence            378899988885 467899999999999           789999999        99998875432111 111111111


Q ss_pred             HHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635          341 LTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI  400 (558)
Q Consensus       341 l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV  400 (558)
                      +     . -.+++++++||+||++|.||..++..|+.+||++|++|+|||.+|.++|+|.
T Consensus       246 ~-----~-~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~  299 (302)
T 3olh_A          246 F-----Q-EKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPE  299 (302)
T ss_dssp             H-----H-HTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCC
T ss_pred             H-----H-hcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCC
Confidence            1     1 1145688999999999999999999999999999999999999999999875

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.65  E-value=1.8e-16  Score=167.74  Aligned_cols=118  Identities=19%  Similarity=0.232  Sum_probs=91.5

Q ss_pred             ccCHHHHHHHHhC-------CCCcEEEEeC--ChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHH
Q 008635          272 DLSPKSTLELLRG-------KENAVLIDVR--HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT  342 (558)
Q Consensus       272 ~ISp~El~elL~~-------~e~avLIDVR--sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~  342 (558)
                      .++++++.+++..       +++.+|||+|  ++.||..||||||+        |+|+.++........+...++...  
T Consensus       125 ~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~--------nip~~~~~~~~~~~~~~~~~l~~~--  194 (423)
T 2wlr_A          125 LVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGAD--------YIDTNEVESEPLWNKVSDEQLKAM--  194 (423)
T ss_dssp             EECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCE--------EEEGGGTEETTTTEECCHHHHHHH--
T ss_pred             ccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcE--------EcCHHHhccCCCCCCCCHHHHHHH--
Confidence            4788999888742       2468999999  99999999999999        999887744111111111111111  


Q ss_pred             HHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecC
Q 008635          343 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       343 aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                         +. -.+++++++||+||++|.||..+++.|+.+||++|++|+|||.+|..+|+|++.+
T Consensus       195 ---~~-~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g  251 (423)
T 2wlr_A          195 ---LA-KHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERG  251 (423)
T ss_dssp             ---HH-HTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCS
T ss_pred             ---HH-HcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccC
Confidence               11 1245689999999999999999999999999999999999999999999999874

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.65  E-value=8e-17  Score=151.60  Aligned_cols=113  Identities=16%  Similarity=0.115  Sum_probs=84.8

Q ss_pred             CcccCHHHHHHHHhCCC------CcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh---HHhhhcCCccchhh
Q 008635          270 SGDLSPKSTLELLRGKE------NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDT  340 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e------~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~---l~eL~~~~~~L~~~  340 (558)
                      ...|+++++.+++.+++      +.+|||||+ .||..||||||+        |||+.++...   +.++...       
T Consensus        30 ~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAi--------niP~~~l~~~~~~l~~l~~~-------   93 (169)
T 3f4a_A           30 VKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGW--------HYAYSRLKQDPEYLRELKHR-------   93 (169)
T ss_dssp             EEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCE--------ECCHHHHHHCHHHHHHHHHH-------
T ss_pred             CcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCE--------ECCHHHhhcccccHHHHHHH-------
Confidence            34799999999996432      489999999 999999999999        9999988765   4333210       


Q ss_pred             HHHHHHhhhhccCCCcEEEEEeCCC-hhHHHHHHHHHH----cC--CCcEEEEcccHHHHHHcCCceec
Q 008635          341 LTAAVIRNLKIVQDRSKVIVMDADG-TRSKGIARSLRK----LG--VMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       341 l~aa~i~~Lkgl~kdk~VVVyC~sG-~RS~~AA~~L~~----~G--fknVy~LdGG~~aWkaAGLPV~~  402 (558)
                      +....+.    ..++++|||||++| .|+..+++.|.+    .|  |.+|++|+|||.+|++++.|...
T Consensus        94 ~~~~~~~----~~~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~~  158 (169)
T 3f4a_A           94 LLEKQAD----GRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDES  158 (169)
T ss_dssp             HHHHHHT----SSSCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCTT
T ss_pred             HHhhccc----ccCCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCccc
Confidence            0000000    01247999999997 799998877654    36  67999999999999999887655

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.64  E-value=1.4e-16  Score=156.08  Aligned_cols=109  Identities=19%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             CcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchh-hhhhHHhhhcCCccchhhHHH
Q 008635          270 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPE-VGGSVKKLLRGGRELDDTLTA  343 (558)
Q Consensus       270 ~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~e-L~~~l~eL~~~~~~L~~~l~a  343 (558)
                      ...|+++++.+++..+     ++++|||||++.||+.||||||+        |||+.+ +.+.+.....    +      
T Consensus        56 ~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAi--------nIP~~~~l~~~l~~~~~----~------  117 (216)
T 3op3_A           56 LKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGAL--------NLYSQEELFNFFLKKPI----V------  117 (216)
T ss_dssp             SEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCE--------ECCSHHHHHHHHTSSCC----C------
T ss_pred             CCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCE--------ECChHHHHHHHHhhccc----c------
Confidence            3579999999999533     26899999999999999999999        999876 4333211000    0      


Q ss_pred             HHHhhhhccCCCc--EEEEEeC-CChhHHHHHHHHHHc----------CCCcEEEEcccHHHHHHcCCceecC
Q 008635          344 AVIRNLKIVQDRS--KVIVMDA-DGTRSKGIARSLRKL----------GVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       344 a~i~~Lkgl~kdk--~VVVyC~-sG~RS~~AA~~L~~~----------GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                             ..++++  +|||||+ +|.||..+++.|+..          ||++||+|+|||.+|.++.-.+-.+
T Consensus       118 -------~~~~~k~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~~lcep  183 (216)
T 3op3_A          118 -------PLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYMELCEP  183 (216)
T ss_dssp             -------CSSTTSEEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             -------ccccCCCCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhCcccccC
Confidence                   011344  5999999 999999999999886          8999999999999999876555443

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.63  E-value=2.1e-16  Score=161.81  Aligned_cols=114  Identities=20%  Similarity=0.218  Sum_probs=88.7

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhh----------------cCCCcccccccccccCCCchhhhhhHHhhhcCCc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRER----------------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGR  335 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~----------------GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~  335 (558)
                      .++++++.+++.  .+ +|||||+++||..                ||||||+        |+|+.++...-..+ ++..
T Consensus       180 ~i~~~el~~~l~--~~-~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~--------niP~~~~~~~~g~~-~~~~  247 (318)
T 3hzu_A          180 RAFRDDVLAILG--AQ-PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAV--------HIPWGKAADESGRF-RSRE  247 (318)
T ss_dssp             BCCHHHHHHHTT--TS-CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCE--------ECCGGGGBCTTSCB-CCHH
T ss_pred             cccHHHHHHhhc--CC-eEEecCCHHHhcccccCccccccccCCcCcCCCCee--------ecCHHHhcCCCCcC-CCHH
Confidence            368999999884  23 9999999999998                9999999        99987664311100 0000


Q ss_pred             cchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHH-cCCCcEEEEcccHHHHHH-cCCceecCCc
Q 008635          336 ELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRK-LGVMVTFLVQGGFQSWVK-EGLRIKELKS  405 (558)
Q Consensus       336 ~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~-~GfknVy~LdGG~~aWka-AGLPV~~~~~  405 (558)
                      +    +    ...+.+++++++||+||++|.||..++..|++ +||++|++|+|||.+|.+ .|+|++.+..
T Consensus       248 ~----l----~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~Pv~~g~~  311 (318)
T 3hzu_A          248 E----L----ERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIVAGEE  311 (318)
T ss_dssp             H----H----HHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCCCBCSSS
T ss_pred             H----H----HHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCCC
Confidence            0    1    11124567899999999999999999999997 999999999999999995 7999998643

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.63  E-value=3.6e-16  Score=165.50  Aligned_cols=118  Identities=16%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             cCHHHHHHHHhCCCCcEEEEeCChhhh-----------hhcCCCcccccccccccCCCch-------hhhhhHHhhhcCC
Q 008635          273 LSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLP-------EVGGSVKKLLRGG  334 (558)
Q Consensus       273 ISp~El~elL~~~e~avLIDVRsp~Ef-----------~~GHIPGAv~a~~~~~~nIPL~-------eL~~~l~eL~~~~  334 (558)
                      |+++++.+++. +++.+|||||++.||           ..||||||+        |+|+.       ++...-. ..++.
T Consensus       274 i~~~e~~~~l~-~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi--------~ip~~~~~~~~~~~~~~~~-~~~~~  343 (423)
T 2wlr_A          274 LDMEQARGLLH-RQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGAR--------WGHAGSDSTHMEDFHNPDG-TMRSA  343 (423)
T ss_dssp             ECHHHHHTTTT-CSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCE--------ECCCCSSTTCCGGGBCTTS-SBCCH
T ss_pred             ecHHHHHHHhc-CCCceEEecCchhheeeeccCCCCCCcCCCCCCcc--------ccccccccccHHHHcCCCC-cCCCH
Confidence            78889888874 467899999999999           889999999        77764       2211000 00000


Q ss_pred             ccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecCCcc
Q 008635          335 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKELKSE  406 (558)
Q Consensus       335 ~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~~~~  406 (558)
                      .    .+... +. -.+++++++||+||++|.||..++..|+.+||++|++|+|||.+|.+ .|+|++.+.++
T Consensus       344 ~----~l~~~-~~-~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~~~~  410 (423)
T 2wlr_A          344 D----DITAM-WK-AWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERG  410 (423)
T ss_dssp             H----HHHHH-HH-TTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEECSSCC
T ss_pred             H----HHHHH-HH-HcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCcccCCCC
Confidence            0    01110 00 02456899999999999999999999999999999999999999998 99999986554

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.61  E-value=3.4e-16  Score=164.20  Aligned_cols=116  Identities=17%  Similarity=0.211  Sum_probs=88.1

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCC--------hhhhhhcCCCcccccccccccCCCchh-hhhhH-----HhhhcCCcc
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRH--------EDLRERDGIPDLRRGARFRYASVYLPE-VGGSV-----KKLLRGGRE  336 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRs--------p~Ef~~GHIPGAv~a~~~~~~nIPL~e-L~~~l-----~eL~~~~~~  336 (558)
                      ..|+++++.+++.  + .+|||||+        +.||..||||||+        |+|+.+ +....     ....+..  
T Consensus        14 ~~Is~~el~~~l~--~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi--------~ip~~~~l~~~~~~~~~~~~lp~~--   80 (373)
T 1okg_A           14 VFLDPSEVADHLA--E-YRIVDCRYSLKIKDHGSIQYAKEHVKSAI--------RADVDTNLSKLVPTSTARHPLPPX--   80 (373)
T ss_dssp             CEECHHHHTTCGG--G-SEEEECCCCSSSTTTTTTHHHHCEETTCE--------ECCTTTTSCCCCTTCCCSSCCCCH--
T ss_pred             cEEcHHHHHHHcC--C-cEEEEecCCccccccchhHHhhCcCCCCE--------EeCchhhhhcccccCCccccCCCH--
Confidence            4699999988874  2 89999998        6999999999999        899875 64320     0000010  


Q ss_pred             chhhHHHHHHhhhhccCCCcEEEEEe-CCChhHH-HHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          337 LDDTLTAAVIRNLKIVQDRSKVIVMD-ADGTRSK-GIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       337 L~~~l~aa~i~~Lkgl~kdk~VVVyC-~sG~RS~-~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                        ..+. ..+.. .+++++++||+|| ++|.|+. +++++|+.+|| +|++|+||+.+|+++|+|++...
T Consensus        81 --~~f~-~~l~~-~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~~  145 (373)
T 1okg_A           81 --AEFI-DWCMA-NGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGE  145 (373)
T ss_dssp             --HHHH-HHHHH-TTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSC
T ss_pred             --HHHH-HHHHH-cCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccCC
Confidence              0111 11111 2456899999999 7888886 99999999999 99999999999999999998753

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.60  E-value=2e-16  Score=144.00  Aligned_cols=108  Identities=23%  Similarity=0.284  Sum_probs=78.5

Q ss_pred             cccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh--------HHhhhcCCccchhhH
Q 008635          271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--------VKKLLRGGRELDDTL  341 (558)
Q Consensus       271 ~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~--------l~eL~~~~~~L~~~l  341 (558)
                      ..|+++++.+++.+. ++.+|||||++.||+.||||||+        |+|++++..+        +..+.+..       
T Consensus        16 ~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAi--------nip~~~~~~~~~~~~~~~~~~~l~~~-------   80 (154)
T 1hzm_A           16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAI--------NVAIPGIMLRRLQKGNLPVRALFTRG-------   80 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCC--------CCCCSSHHHHTBCCSCCCTTTTSTTS-------
T ss_pred             cccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCce--------EeCccHHHHhhhhcCcccHHHhCCCH-------
Confidence            468999999888532 27899999999999999999999        9998765310        00111000       


Q ss_pred             HHHHHhhhhccCCCcEEEEEeCCChhH-------HHHHHHHHHc---CCCcEEEEcccHHHHHHc
Q 008635          342 TAAVIRNLKIVQDRSKVIVMDADGTRS-------KGIARSLRKL---GVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       342 ~aa~i~~Lkgl~kdk~VVVyC~sG~RS-------~~AA~~L~~~---GfknVy~LdGG~~aWkaA  396 (558)
                        .....+.+++++++||+||+.|.++       ..+++.|+.+   ||+ |++|+|||.+|.++
T Consensus        81 --~~~~~~~~~~~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           81 --EDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             --HHHHHHHHSTTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             --HHHHHHhccCCCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence              0011122345788999999999865       4557777765   998 99999999999875

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.58  E-value=2e-15  Score=139.36  Aligned_cols=107  Identities=18%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             cccCHHHHHHHHhC-------CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhh--hhHHh-------hhcCC
Q 008635          271 GDLSPKSTLELLRG-------KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG--GSVKK-------LLRGG  334 (558)
Q Consensus       271 ~~ISp~El~elL~~-------~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~--~~l~e-------L~~~~  334 (558)
                      ..|+++++.+++..       +++.+|||||++.||..||||||+        |+|+.++.  .++..       +... 
T Consensus        11 ~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~--------~i~~~~l~~~~~~~~~~~~~~~~~~~-   81 (158)
T 3tg1_B           11 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAV--------HINCADKISRRRLQQGKITVLDLISC-   81 (158)
T ss_dssp             CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCE--------ECCCSSHHHHHHHTTSSCCHHHHTCC-
T ss_pred             cEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCce--------eechhHHHHHhhhhcCcccHHhhcCC-
Confidence            57999999999952       356899999999999999999999        99998763  22110       1100 


Q ss_pred             ccchhhHHHHHHhhhhccCCCcEEEEEeCCC---------hhHHHHHHHHHHcCCCcEEEEcccHHHHHHc
Q 008635          335 RELDDTLTAAVIRNLKIVQDRSKVIVMDADG---------TRSKGIARSLRKLGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       335 ~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG---------~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA  396 (558)
                      ....        ..++ ..++++||+||.+|         .++..+++.|++.|| +|++|+|||.+|.+.
T Consensus        82 ~~~~--------~~~~-~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~  142 (158)
T 3tg1_B           82 REGK--------DSFK-RIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQN  142 (158)
T ss_dssp             CCSS--------CSST-TTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSS
T ss_pred             HHHH--------HHHh-ccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHH
Confidence            0000        0000 12478999999999         469999999999999 799999999999764

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.51  E-value=1.2e-14  Score=141.11  Aligned_cols=98  Identities=26%  Similarity=0.244  Sum_probs=70.8

Q ss_pred             CCCCcEEEEeCChhhhhhcCCCcccccccccccCCCch--hhhhh-HHhhhcCCccchhhHHHHHHhhhhccCCCcEEEE
Q 008635          284 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP--EVGGS-VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIV  360 (558)
Q Consensus       284 ~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~--eL~~~-l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVV  360 (558)
                      ++++.+|||||++.||..||||||+        |+|+.  ++... .....+....    + ...+.   .++.+++||+
T Consensus         3 ~~~~~~iiDvR~~~ey~~ghIpgAi--------~ip~~~~~~~~~~~~~~~~~~~~----~-~~~~~---~l~~~~~ivv   66 (230)
T 2eg4_A            3 LPEDAVLVDTRPRPAYEAGHLPGAR--------HLDLSAPKLRLREEAELKALEGG----L-TELFQ---TLGLRSPVVL   66 (230)
T ss_dssp             CCTTCEEEECSCHHHHHHCBCTTCE--------ECCCCSCCCCCCSHHHHHHHHHH----H-HHHHH---HTTCCSSEEE
T ss_pred             CCCCEEEEECCChhhHhhCcCCCCE--------ECCccchhcccCCCCCcCCCHHH----H-HHHHH---hcCCCCEEEE
Confidence            3467899999999999999999999        88887  44210 0000000000    0 11111   1234789999


Q ss_pred             EeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecC
Q 008635          361 MDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       361 yC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                      ||++|. +|.++++.|+ +||++|++|+||   |++  +|++..
T Consensus        67 yc~~g~~~s~~a~~~L~-~G~~~v~~l~GG---W~~--~p~~~~  104 (230)
T 2eg4_A           67 YDEGLTSRLCRTAFFLG-LGGLEVQLWTEG---WEP--YATEKE  104 (230)
T ss_dssp             ECSSSCHHHHHHHHHHH-HTTCCEEEECSS---CGG--GCCBCS
T ss_pred             EcCCCCccHHHHHHHHH-cCCceEEEeCCC---Ccc--CcccCC
Confidence            999999 9999999999 999999999999   977  888654

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.50  E-value=2.2e-14  Score=132.39  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             CcccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh--HHhhhcCCccchhhHHHHHH
Q 008635          270 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGGRELDDTLTAAVI  346 (558)
Q Consensus       270 ~~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~--l~eL~~~~~~L~~~l~aa~i  346 (558)
                      ...|+++++.+++.+. ++.+|||||+++||+.||||||+        |||+..+...  ...+........    ...+
T Consensus        14 ~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gai--------nip~~~~~~~~~~~~l~~~lp~~~----~~~~   81 (157)
T 1whb_A           14 KGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSL--------SVPEEAISPGVTASWIEAHLPDDS----KDTW   81 (157)
T ss_dssp             CSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCE--------EECSSSCCTTCCHHHHHHSCCTTH----HHHH
T ss_pred             CCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCc--------ccCHHHccCCCcHHHHHHHCChHH----HHHH
Confidence            3479999999998532 27899999999999999999999        9998766432  111111100000    0001


Q ss_pred             hhhhccCCCcEEEEEeCCChh----HHHHHHHHHH----c----CCC-cEEEEcccHHHHHHcCCceecCCc
Q 008635          347 RNLKIVQDRSKVIVMDADGTR----SKGIARSLRK----L----GVM-VTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       347 ~~Lkgl~kdk~VVVyC~sG~R----S~~AA~~L~~----~----Gfk-nVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      .   ...+...||+||..|.+    +..+++.|..    .    ||. +|++|+|||.+|++. +|.....+
T Consensus        82 ~---~~~~~~~VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~~~  149 (157)
T 1whb_A           82 K---KRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTTNA  149 (157)
T ss_dssp             H---GGGTSSEEEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGBSCC
T ss_pred             H---hcCCCCEEEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-ChhhhCCC
Confidence            1   11234569999998764    3455666662    2    454 499999999999985 88876544

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.50  E-value=6.9e-15  Score=154.27  Aligned_cols=105  Identities=18%  Similarity=0.157  Sum_probs=76.0

Q ss_pred             CCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhh--hhHHhhhcCCccchhhHHHHHHhhh-hc
Q 008635          286 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVG--GSVKKLLRGGRELDDTLTAAVIRNL-KI  351 (558)
Q Consensus       286 e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~--~~l~eL~~~~~~L~~~l~aa~i~~L-kg  351 (558)
                      ++.+|||||++.||.           .||||||+        |||+.++.  ..-....++..++..     .+..+ .+
T Consensus       173 ~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAi--------niP~~~l~~~~~~~~~~~~~~~l~~-----~~~~~~~g  239 (373)
T 1okg_A          173 PQAIITDARSADRFASTVRPYAADKMPGHIEGAR--------NLPYTSHLVTRGDGKVLRSEEEIRH-----NIMTVVQG  239 (373)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCE--------ECCGGGGEECCSSSCEECCHHHHHH-----HHHTTCC-
T ss_pred             cCceEEeCCCHHHccccccccccCCcCccCCCcE--------EecHHHhhccCCCCCccCCHHHHHH-----HHHhhhcC
Confidence            567899999999999           99999999        99998874  210000000000100     00000 02


Q ss_pred             cCC---CcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecC
Q 008635          352 VQD---RSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKEL  403 (558)
Q Consensus       352 l~k---dk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~  403 (558)
                      +++   +++||+||++|.||..++..|+.+||++|++|+|||.+|.. .++|++.+
T Consensus       240 i~~~~~d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~  295 (373)
T 1okg_A          240 AGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  295 (373)
T ss_dssp             ----CCCTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             CCcccCCCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcccC
Confidence            356   89999999999999999999999999999999999999987 68888653

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.48  E-value=6.9e-14  Score=129.55  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             CcccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh--HHhhhcCCccchhhHHHHHH
Q 008635          270 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGGRELDDTLTAAVI  346 (558)
Q Consensus       270 ~~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~--l~eL~~~~~~L~~~l~aa~i  346 (558)
                      ...|+++++.+++++. ++.+|||||+++||+.||||||+        |||+..+...  ...+...   +.. ..... 
T Consensus        19 ~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAi--------nip~~~l~~~~~~~~l~~~---lp~-~~~~l-   85 (157)
T 2gwf_A           19 SGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSL--------SVPEEAISPGVTASWIEAH---LPD-DSKDT-   85 (157)
T ss_dssp             CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCE--------ECCGGGCCTTCCHHHHHHT---SCH-HHHHH-
T ss_pred             CCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCc--------ccCHHHcCCCCcHHHHHHH---cCH-HHHHH-
Confidence            3579999999998633 27899999999999999999999        9998776432  1111111   000 00001 


Q ss_pred             hhhhccCCCcEEEEEeCCChh----HHHHHHHHH----Hc----CCC-cEEEEcccHHHHHHcCCceecC
Q 008635          347 RNLKIVQDRSKVIVMDADGTR----SKGIARSLR----KL----GVM-VTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       347 ~~Lkgl~kdk~VVVyC~sG~R----S~~AA~~L~----~~----Gfk-nVy~LdGG~~aWkaAGLPV~~~  403 (558)
                        +....+...||+||..|.+    +..+++.|.    +.    ||. +|++|+|||.+|++. +|..-.
T Consensus        86 --~~~~~~~~~VVvy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~  152 (157)
T 2gwf_A           86 --WKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTT  152 (157)
T ss_dssp             --HHTTTTSSEEEEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGGBS
T ss_pred             --HHhcCCCCEEEEEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-ChhhcC
Confidence              1111234569999988764    244556655    22    454 499999999999984 877553

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.48  E-value=3.1e-15  Score=160.50  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=0.0

Q ss_pred             HHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcE
Q 008635          278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK  357 (558)
Q Consensus       278 l~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~  357 (558)
                      +.+++ ++++.+|||||+++||+.||||||+        |+|+.++.+.+.++                      +++++
T Consensus       379 ~~~~~-~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~~l----------------------~~~~~  427 (466)
T 3r2u_A          379 HSEDI-TGNESHILDVRNDNEWNNGHLSQAV--------HVPHGKLLETDLPF----------------------NKNDV  427 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH-hCCCcEEEEeCCHHHHhcCcCCCCE--------ECCHHHHHHHHhhC----------------------CCCCe
Confidence            44444 3457899999999999999999999        99999887765543                      36889


Q ss_pred             EEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635          358 VIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK  395 (558)
Q Consensus       358 VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka  395 (558)
                      ||+||++|.||..+++.|+++||++|++|+|||.+|++
T Consensus       428 iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          428 IYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             --------------------------------------
T ss_pred             EEEECCCChHHHHHHHHHHHcCCCCEEEecChHHHHhh
Confidence            99999999999999999999999999999999999975

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.39  E-value=2.1e-13  Score=141.28  Aligned_cols=118  Identities=17%  Similarity=0.216  Sum_probs=84.5

Q ss_pred             cccCHHHHHHHHhCC--CCcEEEEeC--------C-hhhh-hhcCCCcccccccccccCCCchhhhhh---HHhhhcCCc
Q 008635          271 GDLSPKSTLELLRGK--ENAVLIDVR--------H-EDLR-ERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGR  335 (558)
Q Consensus       271 ~~ISp~El~elL~~~--e~avLIDVR--------s-p~Ef-~~GHIPGAv~a~~~~~~nIPL~eL~~~---l~eL~~~~~  335 (558)
                      ..|||+++.+++...  ...++||++        . ..|| +++|||||+        .+.++++.+.   +...+++..
T Consensus        28 ~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv--------~~Dld~~~d~~~~~ph~LP~~~   99 (327)
T 3utn_X           28 DLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSI--------FFDIDAISDKKSPYPHMFPTKK   99 (327)
T ss_dssp             EEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCE--------ECCTTTSSCTTSSSTTCCCCHH
T ss_pred             cccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCe--------eeChHHhcCCCCCCCCCCcCHH
Confidence            369999999999632  347899985        2 4577 679999999        4444443221   111122222


Q ss_pred             cchhhHHHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecC
Q 008635          336 ELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL  403 (558)
Q Consensus       336 ~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~  403 (558)
                      .++..+.+      .|+.++++||||++.|. .+.++||+|+.+||++|++|+|| .+|+++|+|++.+
T Consensus       100 ~f~~~l~~------lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~~~  161 (327)
T 3utn_X          100 VFDDAMSN------LGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLDSS  161 (327)
T ss_dssp             HHHHHHHH------TTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCBCC
T ss_pred             HHHHHHHH------cCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcccC
Confidence            22222222      35678999999998876 78999999999999999999977 8999999999764

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.39  E-value=4.9e-13  Score=138.42  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=86.1

Q ss_pred             cCHHHHHHHHhCC---CCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhhhhHHhhhcC-Cccc
Q 008635          273 LSPKSTLELLRGK---ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRG-GREL  337 (558)
Q Consensus       273 ISp~El~elL~~~---e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~-~~~L  337 (558)
                      ++.+++.+.+.+.   ++.+|||+|++++|.           .||||||+        |+|..++...-....+. ...+
T Consensus       186 ~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~--------nlP~~~~ld~~~~~~~~~~e~l  257 (327)
T 3utn_X          186 VDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQ--------PLPYGSLLDPETKTYPEAGEAI  257 (327)
T ss_dssp             ECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEE--------ECCGGGGSCTTTCCCCCTTHHH
T ss_pred             ecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCc--------ccChhhccCCCCCCCCCcHHHH
Confidence            5566777777533   246899999999995           48999999        99987765332222111 1112


Q ss_pred             hhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635          338 DDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR  399 (558)
Q Consensus       338 ~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP  399 (558)
                      ...+..+......+++++++||+||.+|.+++..+..|+.+||++|.+|+|+|..|.....|
T Consensus       258 ~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~p  319 (327)
T 3utn_X          258 HATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGP  319 (327)
T ss_dssp             HHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccCC
Confidence            22222232233346788999999999999999999999999999999999999999875443

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=4.3e-13  Score=143.34  Aligned_cols=102  Identities=17%  Similarity=0.153  Sum_probs=86.0

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchh-hhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPE-VGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~e-L~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ..|+++++.+++.+  + +|||+|+++||..||||||+        |+|++. +...+..+.                  
T Consensus       273 ~~is~~~l~~~l~~--~-~iiD~R~~~~y~~ghIpGA~--------~i~~~~~~~~~~~~l~------------------  323 (474)
T 3tp9_A          273 VDLPPERVRAWREG--G-VVLDVRPADAFAKRHLAGSL--------NIPWNKSFVTWAGWLL------------------  323 (474)
T ss_dssp             CCCCGGGHHHHHHT--S-EEEECSCHHHHHHSEETTCE--------ECCSSTTHHHHHHHHC------------------
T ss_pred             ceeCHHHHHHHhCC--C-EEEECCChHHHhccCCCCeE--------EECcchHHHHHHHhcC------------------
Confidence            46999999999863  4 99999999999999999999        999864 555555443                  


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                         +++++||+||..|. +.++++.|+.+||++|+.+.+|+.+|+.+|+|+...+.
T Consensus       324 ---~~~~~vvvy~~~~~-~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~~~~  375 (474)
T 3tp9_A          324 ---PADRPIHLLAADAI-APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVASYAN  375 (474)
T ss_dssp             ---CSSSCEEEECCTTT-HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEECCEE
T ss_pred             ---CCCCeEEEEECCCc-HHHHHHHHHHcCCcceEEecCcHHHHHhcccccccccc
Confidence               36889999999887 55699999999999999977799999999998877543

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=98.89  E-value=1.4e-09  Score=116.67  Aligned_cols=80  Identities=8%  Similarity=-0.010  Sum_probs=62.4

Q ss_pred             CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchh-hhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeC
Q 008635          285 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPE-VGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA  363 (558)
Q Consensus       285 ~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~e-L~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~  363 (558)
                      +++++|||+|++++|..||||||+        |+|++. +...+..+                     ++++++||+||.
T Consensus       294 ~~~~~ilD~R~~~~y~~gHIpGAv--------~ip~~~~~~~~~~~~---------------------~~~~~~vvly~~  344 (466)
T 3r2u_A          294 NTNRLTFDLRSKEAYHGGHIEGTI--------NIPYDKNFINQIGWY---------------------LNYDQEINLIGD  344 (466)
T ss_dssp             CCCSEEEECSCHHHHHHSCCTTCE--------ECCSSTTHHHHHTTT---------------------CCTTSCEEEESC
T ss_pred             CCCeEEEECCCHHHHhhCCCCCcE--------ECCccHHHHHHHHhc---------------------cCCCCeEEEEEC
Confidence            357899999999999999999999        999863 54444322                     237899999999


Q ss_pred             CChhHHHHHHHHHHcCCCcEEE-EcccHHHHH
Q 008635          364 DGTRSKGIARSLRKLGVMVTFL-VQGGFQSWV  394 (558)
Q Consensus       364 sG~RS~~AA~~L~~~GfknVy~-LdGG~~aWk  394 (558)
                       +.++.+++|.|+.+||++|+. ++|+...|.
T Consensus       345 -~~~a~~a~~~L~~~G~~~v~~~l~g~~~~~~  375 (466)
T 3r2u_A          345 -YHLVSKATHTLQLIGYDDIAGYQLPQSKIQT  375 (466)
T ss_dssp             -HHHHHHHHHHHHTTTCCCEEEEECCC-----
T ss_pred             -CchHHHHHHHhhhhhcccccccccCcccccH
Confidence             668999999999999999997 677655544

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.29  E-value=4.8e-08  Score=103.34  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=90.0

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ....|.+|||.+|+|++|+....+.+........   ...+++|++|+.++..|+.            .......+++.|
T Consensus       293 ~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~------------~~~~~~~~~~~~  360 (437)
T 4eqs_A          293 LAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYK------------MVEVTQGAHANY  360 (437)
T ss_dssp             SHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEE------------EEEEEEESSCTT
T ss_pred             hHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCce------------EEEEecCCchhh
Confidence            4678999999999999975566788888888776   6699999999999887753            333445678889


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~  255 (558)
                      ++|..+..+               |+|+++ +|++||+|+ +|-++.+.+|+      .+++++..++++
T Consensus       361 ~~~~~~g~~---------------Kli~d~~~~~ilGa~~-~g~~~a~e~i~------~~~~ai~~~~t~  408 (437)
T 4eqs_A          361 YPGNSPLHL---------------RVYYDTSNRQILRAAA-VGKEGADKRID------VLSMAMMNQLTV  408 (437)
T ss_dssp             SSSCCEEEE---------------EEEEETTTCBEEEEEE-EESSSHHHHHH------HHHHHHHTTCBG
T ss_pred             cCCCCcEEE---------------EEEEECCCCEEEEEEE-ECcCCHHHHHH------HHHHHHHcCCcH
Confidence            999999999               999964 899999999 88777777787      766666666554

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.23  E-value=1.3e-07  Score=100.12  Aligned_cols=114  Identities=11%  Similarity=0.003  Sum_probs=85.0

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ....|.+|||.+|+|++| ....+.+...+.+.+   ...+++|++|+.+++.|++|          ++......+++.|
T Consensus       311 ~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~----------~~~~~~~~~~~~~  379 (472)
T 3iwa_A          311 LGSMANRQGRVIGTNLAD-GDATFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDA----------VNVHVEQFDRAHF  379 (472)
T ss_dssp             CTTHHHHHHHHHHHHHTT-CCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCE----------EEEEEEC------
T ss_pred             hHHHHHHHHHHHHHHhcC-CCccCCCCCcceEEEECCceeEEEECCHHHHHHcCCce----------EEEEEecCCccCc
Confidence            466899999999999994 667788888877655   66899999999999999876          4455567788999


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHH--HHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAI--EGLERSLGFDPNDPIVPFVVFLGTSAT  256 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~--~gvdkridf~~~~PVLa~ai~~g~~~~  256 (558)
                      |||.....+               |+|++ .+|++||+|+ +|-  +++..+|+      .++.++..+.+..
T Consensus       380 ~~~~~~~~~---------------kli~~~~~~~ilG~~~-~g~~~~~~~~~i~------~~~~ai~~~~t~~  430 (472)
T 3iwa_A          380 YPEKTIMTL---------------QLVVDRPTRRVLGIQG-FSTLGDALTARIN------AVATMLASKPTVE  430 (472)
T ss_dssp             -----CEEE---------------EEEEETTTCBEEEEEE-EESCHHHHHHHHH------HHHHHHTTCCBHH
T ss_pred             cCCCceEEE---------------EEEEECCCCEEEEEEE-ECCCcccHHHHHH------HHHHHHHcCCCHH
Confidence            999998999               99996 5999999999 888  77888888      7777777777654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.09  E-value=2.6e-07  Score=97.32  Aligned_cols=114  Identities=17%  Similarity=0.086  Sum_probs=90.5

Q ss_pred             hhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCcee
Q 008635          109 SSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVV  185 (558)
Q Consensus       109 ~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  185 (558)
                      .....|++|||.+|+|++ |....+++.......+   ...+++|++|+.+++.|++|          .+......+++.
T Consensus       296 ~l~~~A~~~g~~aa~~i~-g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~----------~~~~~~~~~~~~  364 (449)
T 3kd9_A          296 PLAPAGNKMGYVAGSNIA-GKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDV----------RTAFIKASTRPH  364 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHT-TCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCE----------EEEEEEEESSCT
T ss_pred             ccHHHHHHHHHHHHHHhc-CCCccCCCcccceEEEEcCcEEEEecCCHHHHHHCCCce----------EEEEEecCCccc
Confidence            356789999999999999 4677788877776655   66899999999999999876          444445677888


Q ss_pred             ecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635          186 YYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT  256 (558)
Q Consensus       186 y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~  256 (558)
                      ||||.....+               |+|++ .+|++||+|+ +|-+ ...+|+      .++.++..+.+..
T Consensus       365 ~~~~~~~~~~---------------kli~~~~~~~ilG~~~-~g~~-a~e~i~------~~~~ai~~~~t~~  413 (449)
T 3kd9_A          365 YYPGGREIWL---------------KGVVDNETNRLLGVQV-VGSD-ILPRID------TAAAMLMAGFTTK  413 (449)
T ss_dssp             TSTTCCEEEE---------------EEEEETTTCBEEEEEE-EESS-CHHHHH------HHHHHHHTTCBHH
T ss_pred             cCCCCceEEE---------------EEEEECCCCEEEEEEE-EChH-HHHHHH------HHHHHHHcCCcHH
Confidence            9999988888               99996 5899999999 7766 667777      6666666666643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.67  E-value=5.9e-06  Score=87.42  Aligned_cols=126  Identities=5%  Similarity=-0.065  Sum_probs=87.0

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-ccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++++..     .......|++|||.+|+|++|+.... ....+.+.+.. ...+++|++|+.+++.|++|.+.    
T Consensus       301 iya~GD~~~-----~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~~~~~~~----  371 (463)
T 4dna_A          301 IYALGDVTD-----RVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVY----  371 (463)
T ss_dssp             EEECSGGGS-----SCCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHSSEEEEE----
T ss_pred             EEEEEecCC-----CCCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcCCCeEEE----
Confidence            555666543     22345679999999999999643321 22334454444 66899999999999999766221    


Q ss_pred             ccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHH
Q 008635          171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV  249 (558)
Q Consensus       171 ~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai  249 (558)
                         ... .....+ .|++|.....+               |+|++ .+|++||+|+ +|- +...+|+      .+++++
T Consensus       372 ---~~~-~~~~~~-~~~~~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~-~a~~~i~------~~~~ai  423 (463)
T 4dna_A          372 ---RAE-FRPMKA-TLSGRKEKTIM---------------KLVVNAADRKVVGAHI-LGH-DAGEMAQ------LLGISL  423 (463)
T ss_dssp             ---EEE-ECCTTH-HHHCCCCCEEE---------------EEEEETTTCBEEEEEE-EST-THHHHHH------HHHHHH
T ss_pred             ---EEe-ccccch-hhcCCCceEEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HHHHHH
Confidence               122 223334 47899999999               99996 5999999999 885 5788888      776666


Q ss_pred             HHhhHH
Q 008635          250 FLGTSA  255 (558)
Q Consensus       250 ~~g~~~  255 (558)
                      ..+.+.
T Consensus       424 ~~~~t~  429 (463)
T 4dna_A          424 RAGCTK  429 (463)
T ss_dssp             HTTCBH
T ss_pred             HCCCCH
Confidence            655553

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.55  E-value=9e-06  Score=86.64  Aligned_cols=124  Identities=9%  Similarity=-0.013  Sum_probs=86.8

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Ccccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++++...     ...+..|++|||.+|++++| ....++ ..+.+.+.- ...+++||+|+.+++.|++|       
T Consensus       333 IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~-------  399 (491)
T 3urh_A          333 VYAIGDVVRG-----PMLAHKAEDEGVAVAEIIAG-QAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAY-------  399 (491)
T ss_dssp             EEECGGGSSS-----CCCHHHHHHHHHHHHHHHTT-SCCCCCTTCCCEEECSSSCEEEEECCHHHHHHTTCCE-------
T ss_pred             EEEEEecCCC-----ccchhHHHHHHHHHHHHHcC-CCcccCCCCCCEEEEccCCeEEEeCCHHHHHhCCCCE-------
Confidence            5555665421     24577899999999999995 555443 233333322 67899999999999999877       


Q ss_pred             ccceeee--ecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          171 VALEESM--TNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       171 ~~~~~~~--~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                         +...  ....+++.|+ |.....+               |+|++ .+|++||+|+ +|.+ ...+|+      .+++
T Consensus       400 ---~~~~~~~~~~~~~~~~-~~~~g~~---------------k~i~~~~~~~ilG~~~-~g~~-a~e~i~------~~~~  452 (491)
T 3urh_A          400 ---KIGKFPFTANGRARAM-LQTDGFV---------------KILADKETDRVLGGHI-IGFG-AGEMIH------EIAV  452 (491)
T ss_dssp             ---EEEEEEGGGCHHHHHT-TCCCCEE---------------EEEEETTTCBEEEEEE-ESTT-HHHHHH------HHHH
T ss_pred             ---EEEEEecCcchhhhcC-CCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence               2222  2234555554 6677888               99996 5999999999 8875 567888      7777


Q ss_pred             HHHHhhHHH
Q 008635          248 VVFLGTSAT  256 (558)
Q Consensus       248 ai~~g~~~~  256 (558)
                      ++..+.+..
T Consensus       453 ai~~~~t~~  461 (491)
T 3urh_A          453 LMEFGGSSE  461 (491)
T ss_dssp             HHHTTCBHH
T ss_pred             HHHCCCcHH
Confidence            777766643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.52  E-value=3.9e-06  Score=88.56  Aligned_cols=112  Identities=9%  Similarity=-0.012  Sum_probs=80.6

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCccccc---cccccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSA---GSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a---~~~~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      .+..|.+|||.+|+|++| ....+.+.....   +.....+++|++|+.+++.|++|          +.......+++  
T Consensus       296 ~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~----------~~~~~~~~~~~--  362 (452)
T 3oc4_A          296 LVNNAVRTGLVVANNLEE-KTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTL----------ASIIVRQPAPP--  362 (452)
T ss_dssp             CHHHHHHHHHHHTTSSSS-CCCCCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCE----------EEEEEEEECTT--
T ss_pred             hHHHHHHHHHHHHHHhcC-CCccCCCccccEEEEEcCeeEEEecCCHHHHHHCCCce----------EEEEEecCCcc--
Confidence            567899999999999995 555665544443   33367899999999999999876          33333223333  


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT  256 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~  256 (558)
                      ++|.....+               |+|++ .+|++||+|+ +|-.+...+|+      .++.++..+.+..
T Consensus       363 ~~~~~~~~~---------------kli~~~~~~~ilG~~~-~g~~~a~e~i~------~~~~ai~~~~t~~  411 (452)
T 3oc4_A          363 LQHGTEILG---------------KLIYDKVTQRVLGAQL-CSKNNCLEKIN------TLALSIQTGQTLT  411 (452)
T ss_dssp             TTCSCEEEE---------------EEEEETTTCBEEEEEE-EESSCCTHHHH------HHHHHHHTTCBHH
T ss_pred             CCCCCeEEE---------------EEEEECCCCEEEEEEE-EeCCCHHHHHH------HHHHHHHcCCCHH
Confidence            678777888               99996 5899999999 77544556666      6666666666543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.48  E-value=1e-05  Score=85.70  Aligned_cols=124  Identities=10%  Similarity=-0.022  Sum_probs=85.4

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC-cccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ-TGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~-~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++++..     -...+..|++|||.+|+|++| ....++. .+.+.+.- ...+++||+|+.+++.|++|       
T Consensus       313 Iya~GD~~~-----~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~~~-------  379 (476)
T 3lad_A          313 VYAIGDVVR-----GAMLAHKASEEGVVVAERIAG-HKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAI-------  379 (476)
T ss_dssp             EEECGGGSS-----SCCCHHHHHHHHHHHHHHHHH-CCCCCCTTCCCEEECSSSEEEEEECCHHHHHHTTCCE-------
T ss_pred             EEEEEccCC-----CcccHHHHHHHHHHHHHHhcC-CCcccCCCCCCEEEECcCCEEEeeCCHHHHHhcCCCE-------
Confidence            555666552     122467899999999999995 5544443 23333222 66899999999999999877       


Q ss_pred             ccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          171 VALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       171 ~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                         +....  ...+++.|+ |.....+               |+|++ .+|++||+|+ +|.+ ...+|+      .+++
T Consensus       380 ---~~~~~~~~~~~~~~~~-~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~~-a~~~i~------~~~~  432 (476)
T 3lad_A          380 ---NVGVFPFAASGRAMAA-NDTAGFV---------------KVIADAKTDRVLGVHV-IGPS-AAELVQ------QGAI  432 (476)
T ss_dssp             ---EEEEEEGGGCHHHHHH-TCCCCEE---------------EEEEETTTCBEEEEEE-EETT-HHHHHH------HHHH
T ss_pred             ---EEEEEeccccchheec-CCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence               22221  234455554 5667788               99996 5999999999 8865 567888      7777


Q ss_pred             HHHHhhHHH
Q 008635          248 VVFLGTSAT  256 (558)
Q Consensus       248 ai~~g~~~~  256 (558)
                      ++..+++..
T Consensus       433 ai~~~~t~~  441 (476)
T 3lad_A          433 AMEFGTSAE  441 (476)
T ss_dssp             HHHHTCBHH
T ss_pred             HHHCCCcHH
Confidence            777776643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.40  E-value=1.5e-05  Score=84.91  Aligned_cols=125  Identities=7%  Similarity=-0.094  Sum_probs=84.1

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-ccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++++..     ....+..|++|||.+|+|++|+.... ....+.+.+.. ...+++||+|+.+++.|.+|.+.    
T Consensus       321 Iya~GD~~~-----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~----  391 (484)
T 3o0h_A          321 IWAVGDVTG-----HIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIY----  391 (484)
T ss_dssp             EEECGGGGT-----SCCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHCSEEEEE----
T ss_pred             EEEEEecCC-----CCcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcCCCEEEE----
Confidence            555666543     12445679999999999999643322 22344555544 67999999999999999766221    


Q ss_pred             ccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHH
Q 008635          171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV  249 (558)
Q Consensus       171 ~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai  249 (558)
                         ...+ ....+ .|++|.....+               |+|++ .+|++||+|+ +|- ....+|+      .+++++
T Consensus       392 ---~~~~-~~~~~-~~~~~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~-~a~~~i~------~~~~ai  443 (484)
T 3o0h_A          392 ---RTVF-RPMRN-VLSGSPEKMFM---------------KLVVDGESRIVVGAHV-LGE-NAGEIAQ------LIGISL  443 (484)
T ss_dssp             ---EEEE-CCHHH-HHHTCCCCEEE---------------EEEEETTTCBEEEEEE-EST-THHHHHH------HHHHHH
T ss_pred             ---EecC-Ccchh-hccCCCCcEEE---------------EEEEECCCCEEEEEEE-ECc-CHHHHHH------HHHHHH
Confidence               1121 22233 46889888999               99996 5999999999 775 4677777      666665


Q ss_pred             HHhhH
Q 008635          250 FLGTS  254 (558)
Q Consensus       250 ~~g~~  254 (558)
                      ..+++
T Consensus       444 ~~~~t  448 (484)
T 3o0h_A          444 KGKLT  448 (484)
T ss_dssp             HTTCB
T ss_pred             HCCCC
Confidence            55554

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.33  E-value=3.4e-05  Score=81.74  Aligned_cols=127  Identities=8%  Similarity=-0.039  Sum_probs=82.3

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc---ccccCcccccccc-ccccccchhhHHhhhcccchhhhhc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF---SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~---~~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      |+-++++..     ....+..|.+|||.+|+|++|+..   ..+..+ -..+.- ...+++||+|+.+++.+..+++-  
T Consensus       326 IyA~GD~~~-----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~-p~~~~~~p~~a~vGlte~~a~~~~~~~~~~--  397 (478)
T 3dk9_A          326 IYAVGDVCG-----KALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNI-PTVVFSHPPIGTVGLTEDEAIHKYGIENVK--  397 (478)
T ss_dssp             EEECGGGGC-----SSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTC-CEEECCSSCEEEEECCHHHHHHHHCGGGEE--
T ss_pred             EEEEEecCC-----CCccHhHHHHHHHHHHHHHcCCCCcccCCCCCC-CeEEECCCceEEeeCCHHHHHhhCCCccEE--
Confidence            566666651     223466789999999999996411   223332 222222 66899999999999987533110  


Q ss_pred             ccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635          169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPF  247 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~  247 (558)
                         . -+.-..+..++.+ +|.....+               |+|++ .+|++||+|+ +|. +...+|+      .+++
T Consensus       398 ---~-~~~~~~~~~~~~~-~~~~~g~~---------------k~i~~~~~~~ilG~~~-~g~-~a~e~i~------~~~~  449 (478)
T 3dk9_A          398 ---T-YSTSFTPMYHAVT-KRKTKCVM---------------KMVCANKEEKVVGIHM-QGL-GCDEMLQ------GFAV  449 (478)
T ss_dssp             ---E-EEEEECCGGGGGC-SSCCCEEE---------------EEEEETTTTEEEEEEE-EST-THHHHHH------HHHH
T ss_pred             ---E-EEeecCcchhhhh-cCCCcEEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HHHH
Confidence               1 1112223334433 78888888               99995 5999999999 885 5778888      7766


Q ss_pred             HHHHhhHH
Q 008635          248 VVFLGTSA  255 (558)
Q Consensus       248 ai~~g~~~  255 (558)
                      ++..+++.
T Consensus       450 ai~~~~t~  457 (478)
T 3dk9_A          450 AVKMGATK  457 (478)
T ss_dssp             HHHTTCBH
T ss_pred             HHHCCCCH
Confidence            66655553

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.31  E-value=2.3e-05  Score=83.00  Aligned_cols=126  Identities=10%  Similarity=0.059  Sum_probs=84.9

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcC--cccccc-Cccccccc-cccccccchhhHHhhhcccchhhhhc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSR--VFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g--~~~~~~-~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      |+-++++...     ...+..|++|||.+|+|++|+  ....++ ..+...+. ....+++|++|+.+++.|++|     
T Consensus       303 Iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~-----  372 (466)
T 3l8k_A          303 VFATGDANGL-----APYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIEI-----  372 (466)
T ss_dssp             EEECGGGTCS-----CCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTCCE-----
T ss_pred             EEEEEecCCC-----CccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhCCCCE-----
Confidence            5556665532     345678999999999999964  222221 12223332 267899999999999999876     


Q ss_pred             ccccceeeeecCCCc-eeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          169 TIVALEESMTNGASF-VVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~-~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                           +.....-.++ -.+++|.....+               |+|+++ +|++||+|+ +|.+ ...+|+      .++
T Consensus       373 -----~~~~~~~~~~~~~~~~~~~~g~~---------------k~i~~~~~~~ilG~~~-~g~~-a~e~i~------~~~  424 (466)
T 3l8k_A          373 -----VEAEYNMEEDVSAQIYGQKEGVL---------------KLIFERGSMRLIGAWM-IGVH-SQYLIN------ELG  424 (466)
T ss_dssp             -----EEEEEEGGGSHHHHHHTCCCCEE---------------EEEEETTTCBEEEEEE-ESTT-HHHHHH------HHH
T ss_pred             -----EEEEEEcccChhheecCCCeEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence                 3333322222 224567778888               999965 899999999 8875 456788      777


Q ss_pred             HHHHHhhHHH
Q 008635          247 FVVFLGTSAT  256 (558)
Q Consensus       247 ~ai~~g~~~~  256 (558)
                      +++..+.+..
T Consensus       425 ~ai~~~~t~~  434 (466)
T 3l8k_A          425 LAVAYGLNAK  434 (466)
T ss_dssp             HHHHTTCBHH
T ss_pred             HHHHCcCCHH
Confidence            7777776644

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.24  E-value=2.5e-05  Score=83.22  Aligned_cols=101  Identities=23%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ....|.+|||.+|++++| ....+.+.......+   ...+++|++|+.++..|++|          +.......+++.|
T Consensus       335 ~~~~A~~qg~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~----------~~~~~~~~~~~~~  403 (480)
T 3cgb_A          335 IGTTANKQGRLAGLNMLD-KRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPY----------KTVKVDSTNMAGY  403 (480)
T ss_dssp             CHHHHHHHHHHHHHHHTT-CCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCE----------EEEEEEEESSCTT
T ss_pred             hHHHHHHHHHHHHHHhcC-CCccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCce----------EEEEEecCCcccc
Confidence            467899999999999995 555666665544444   66899999999999998876          3433444667788


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcC
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLG  237 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkrid  237 (558)
                      +|+.....+               |++++ .+|+++|+|+ +|..+...++.
T Consensus       404 ~~~~~~~~~---------------kl~~~~~~~~ilG~~~-vg~~~a~e~i~  439 (480)
T 3cgb_A          404 YPNAKPLYL---------------KLLYRSDTKQLLGGQV-IGEEGVDKRID  439 (480)
T ss_dssp             STTCCEEEE---------------EEEEETTTCBEEEEEE-EESSSHHHHHH
T ss_pred             cCCCceEEE---------------EEEEECCCCEEEEEEE-ECCccHHHHHH
Confidence            888777778               88996 4899999888 55443334444

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.04  E-value=3.4e-05  Score=81.10  Aligned_cols=93  Identities=16%  Similarity=0.136  Sum_probs=70.2

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      ....|.+|||.+|+|++| ....+.+.......+   ...+++|++|+.++..|+++          +........++.|
T Consensus       298 ~~~~A~~qg~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~----------~~~~~~~~~~~~~  366 (447)
T 1nhp_A          298 LATNARKQGRFAVKNLEE-PVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKET----------KAVTVVEDYLMDF  366 (447)
T ss_dssp             CHHHHHHHHHHHHHTSSS-CCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCC----------EEEEEEEESSCTT
T ss_pred             hHHHHHHHHHHHHHhhcC-CCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCCce----------EEEEEEcCCcccc
Confidence            577899999999999995 554566555544444   56799999999999988766          3333345667778


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAI  229 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~  229 (558)
                      +|+.....+               |+++++ +|+++|+|+ +|-
T Consensus       367 ~~~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~  394 (447)
T 1nhp_A          367 NPDKQKAWF---------------KLVYDPETTQILGAQL-MSK  394 (447)
T ss_dssp             CTTCCEEEE---------------EEEECTTTCBEEEEEE-EES
T ss_pred             CCCCceEEE---------------EEEEECCCCEEEEEEE-EcC
Confidence            888877778               889965 899999888 443

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.00  E-value=4.9e-05  Score=80.01  Aligned_cols=93  Identities=18%  Similarity=0.089  Sum_probs=68.8

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      .+..|.+|||.+|+|++| ....+.+.......+   ...+++|++|+.++..|+++          .........++.|
T Consensus       299 ~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~----------~~~~~~~~~~~~~  367 (452)
T 2cdu_A          299 LATNAVRQGRLVGLNLTE-DKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKV----------SEVIIADNYRPEF  367 (452)
T ss_dssp             CHHHHHHHHHHHHHTSSS-CCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCC----------EEEEEEEESSCTT
T ss_pred             hHHHHHHHHHHHHHHhCC-CCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCCce----------EEEEEecCCcccc
Confidence            567899999999999995 555555554433233   67899999999999998766          3322334566777


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAI  229 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~  229 (558)
                      +|+.....+               |+++++ +|+++|+|+ +|-
T Consensus       368 ~~~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~  395 (452)
T 2cdu_A          368 MLSTDEVLM---------------SLVYDPKTRVILGGAL-SSM  395 (452)
T ss_dssp             BSCCCEEEE---------------EEEECTTTCBEEEEEE-EES
T ss_pred             CCCCceEEE---------------EEEEECCCCEEEEEEE-EcC
Confidence            787777777               889965 899999888 543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.96  E-value=8.5e-05  Score=80.19  Aligned_cols=126  Identities=6%  Similarity=-0.079  Sum_probs=75.8

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhccc--chhhhh
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVA--AVDVLR  167 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~--~~~~l~  167 (558)
                      |+-++++...    -...+..|.+|||.+|+|++| ....+....+.....   ...+++||+|+.+++.+.  .+    
T Consensus       349 IyA~GD~~~g----~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~----  419 (519)
T 3qfa_A          349 IYAIGDILED----KVELTPVAIQAGRLLAQRLYA-GSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENI----  419 (519)
T ss_dssp             EEECGGGBSS----SCCCHHHHHHHHHHHHHHHHS-CCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGE----
T ss_pred             EEEEEeccCC----CCccHHHHHHHHHHHHHHHcC-CCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCE----
Confidence            5566666521    123456788999999999995 433333333322222   668999999999988632  22    


Q ss_pred             cccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc--chhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          168 NTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP--VGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~--~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                          .+.+....+.+++.++.+.....+               |+|+++  +|++||+|+ +|-+ ....|+      .+
T Consensus       420 ----~~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~~~~~~~~ilGa~i-~g~~-a~e~i~------~~  472 (519)
T 3qfa_A          420 ----EVYHSYFWPLEWTIPSRDNNKCYA---------------KIICNTKDNERVVGFHV-LGPN-AGEVTQ------GF  472 (519)
T ss_dssp             ----EEEEEEECCHHHHTTTCCTTTEEE---------------EEEEETTTTCEEEEEEE-ESTT-HHHHHH------HH
T ss_pred             ----EEEEEeccchhhhhhccCCCcEEE---------------EEEEecCCCCEEEEEEE-ECCC-HHHHHH------HH
Confidence                112222223344444445556677               899963  799999999 6654 234455      44


Q ss_pred             HHHHHHhhH
Q 008635          246 PFVVFLGTS  254 (558)
Q Consensus       246 a~ai~~g~~  254 (558)
                      ++++..+++
T Consensus       473 ~~ai~~~~t  481 (519)
T 3qfa_A          473 AAALKCGLT  481 (519)
T ss_dssp             HHHHHTTCB
T ss_pred             HHHHHCCCC
Confidence            545444443

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.87  E-value=9.7e-05  Score=79.71  Aligned_cols=105  Identities=10%  Similarity=-0.056  Sum_probs=69.9

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Ccccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-++++...     ...+..|.+|||.+|+|++| ....++ +.+...+.- ...+++|++|+.+++.|++|       
T Consensus       348 IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~-------  414 (523)
T 1mo9_A          348 VYAVGDLIGG-----PMEMFKARKSGCYAARNVMG-EKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEI-------  414 (523)
T ss_dssp             EEECGGGGCS-----SCSHHHHHHHHHHHHHHHTT-CCCCCCCCSCCEEEESSSEEEEEECCHHHHHHTTCCE-------
T ss_pred             EEEEeecCCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEECCCceEEEeCCHHHHHhCCCCE-------
Confidence            4555555421     13456799999999999995 555442 334433332 66899999999999999876       


Q ss_pred             ccceeeeecC----------------CCceeec-CCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHH
Q 008635          171 VALEESMTNG----------------ASFVVYY-YGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAI  229 (558)
Q Consensus       171 ~~~~~~~~~~----------------~~~~~y~-pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~  229 (558)
                         .......                ..++.|+ |+.....+               |+|++ .+|++||+|+ +|.
T Consensus       415 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~  472 (523)
T 1mo9_A          415 ---VTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQ---------------KIVIDAKTRKVLGAHH-VGY  472 (523)
T ss_dssp             ---EEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEE---------------EEEEETTTCBEEEEEE-EES
T ss_pred             ---EEEEEecccccccccccccccccccceEEeecCCCCEEE---------------EEEEECCCCEEEEEEE-ECC
Confidence               2222111                2345566 36666667               88996 5899999988 554

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.80  E-value=0.00012  Score=78.52  Aligned_cols=128  Identities=13%  Similarity=0.006  Sum_probs=84.1

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcC-cccccc-Cccccccc-cccccccchhhHHhhhcc-----cch
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSR-VFSSID-QTGGSAGS-KLTNFSTDLKEASSKATV-----AAV  163 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g-~~~~~~-~~~~~a~~-~~t~~stgl~e~~~~~~~-----~~~  163 (558)
                      .|+-++++..-     ......|.+|||.+|+|+++. .....+ ...-..+. ....+++|++|+.+++.+     ++|
T Consensus       307 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~  381 (492)
T 3ic9_A          307 HIFVAGDANNT-----LTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANY  381 (492)
T ss_dssp             TEEECGGGGTS-----SCSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCE
T ss_pred             CEEEEEecCCC-----CccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccE
Confidence            35566666431     234668999999999999951 111111 12222222 266899999999999883     554


Q ss_pred             hhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCC
Q 008635          164 DVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPND  242 (558)
Q Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~  242 (558)
                              .+.+......+++.|+ |.....+               |+|++ .+|++||+|+ +|-+ ....|+     
T Consensus       382 --------~~~~~~~~~~~~a~~~-~~~~g~~---------------kli~~~~~~~ilG~~~-~g~~-a~e~i~-----  430 (492)
T 3ic9_A          382 --------VVGQVSFEGQGRSRVM-GKNKGLL---------------NVYADRTSGEFLGAEM-FGPA-AEHIGH-----  430 (492)
T ss_dssp             --------EEEEEEGGGCHHHHHT-TCCCCEE---------------EEEEETTTCBEEEEEE-EETT-HHHHHH-----
T ss_pred             --------EEEEEEeccchhhhhc-CCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH-----
Confidence                    1223334455666665 7778888               99996 5999999999 7765 466777     


Q ss_pred             CchHHHHHHhhHHH
Q 008635          243 PIVPFVVFLGTSAT  256 (558)
Q Consensus       243 PVLa~ai~~g~~~~  256 (558)
                       .+++++..+.+..
T Consensus       431 -~~~~ai~~~~t~~  443 (492)
T 3ic9_A          431 -LLAWARQQQMTVQ  443 (492)
T ss_dssp             -HHHHHHHTTCBHH
T ss_pred             -HHHHHHHCCCCHH
Confidence             6676766666643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.77  E-value=0.0002  Score=76.69  Aligned_cols=114  Identities=10%  Similarity=-0.042  Sum_probs=76.8

Q ss_pred             hhhhHhhhHhHHHHHhhcCccc--cccCcccccccc-ccccccchhhHHhhhc-c-cchhhhhcccccceeeeecCCCce
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFS--SIDQTGGSAGSK-LTNFSTDLKEASSKAT-V-AAVDVLRNTIVALEESMTNGASFV  184 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~--~~~~~~~~a~~~-~t~~stgl~e~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~  184 (558)
                      ....|++|||.+|+|++|+...  .+.+ +.+.+.- ...+++|++|+.+++. | ..+.        +-.....+..++
T Consensus       353 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~-~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~--------~~~~~~~~~~~~  423 (500)
T 1onf_A          353 LTPVAINAGRLLADRLFLKKTRKTNYKL-IPTVIFSHPPIGTIGLSEEAAIQIYGKENVK--------IYESKFTNLFFS  423 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHSCTTCCCCCSS-CCEEECCSSCEEEEECCHHHHHHHTCGGGEE--------EEEEEECCGGGT
T ss_pred             chhHHHHHHHHHHHHHhCCCCccCCCCC-CCeEEEcCcceEEEeCCHHHHHhcCCCccEE--------EEEEECchhhhh
Confidence            5678999999999999964322  2433 2333222 6789999999999887 4 4431        112223355666


Q ss_pred             ee---cCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635          185 VY---YYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       185 ~y---~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~  255 (558)
                      .|   ..+.....+               |+|++ .+|++||+|+ +|.+ ...+|+      .++.++..+.+.
T Consensus       424 ~~~~~~~~~~~~~~---------------kli~~~~~~~ilG~~~-~g~~-a~~~i~------~~~~ai~~~~t~  475 (500)
T 1onf_A          424 VYDIEPELKEKTYL---------------KLVCVGKDELIKGLHI-IGLN-ADEIVQ------GFAVALKMNATK  475 (500)
T ss_dssp             TSCSCGGGSCCEEE---------------EEEEETTTTEEEEEEE-ESTT-HHHHHH------HHHHHHHTTCBH
T ss_pred             hccccccCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHHHHcCCCH
Confidence            65   445667777               89996 4899999999 7754 777777      666666666554

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.74  E-value=0.00017  Score=76.64  Aligned_cols=123  Identities=12%  Similarity=0.040  Sum_probs=79.8

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++...     ......|.+|||.+|+|++| ....++...-..+.-  ...+++|++|+.+++.|++|      
T Consensus       318 ~IyA~GD~~~~-----~~l~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~------  385 (482)
T 1ojt_A          318 HIYAIGDIVGQ-----PMLAHKAVHEGHVAAENCAG-HKAYFDARVIPGVAYTSPEVAWVGETELSAKASARKI------  385 (482)
T ss_dssp             TEEECGGGTCS-----SCCHHHHHHHHHHHHHHHTT-CCCCCCCCCCCEEECSSSCEEEEECCHHHHHHHTCCE------
T ss_pred             CEEEEEcccCC-----CccHHHHHHHHHHHHHHHcC-CCccCCCCCCCEEEEcCCCeEEEeCCHHHHHhcCCCE------
Confidence            35555665431     23456799999999999995 555555443333322  66899999999999999876      


Q ss_pred             cccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          170 IVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       170 ~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                          .....  ....++.++ |.....+               |++++ .+|++||+|+ +|.. ....|+      .++
T Consensus       386 ----~~~~~~~~~~~~~~~~-~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~~-a~e~i~------~~~  437 (482)
T 1ojt_A          386 ----TKANFPWAASGRAIAN-GCDKPFT---------------KLIFDAETGRIIGGGI-VGPN-GGDMIG------EVC  437 (482)
T ss_dssp             ----EEEEEEGGGCHHHHHT-TCCSCEE---------------EEEEETTTCBEEEEEE-ESTT-HHHHHH------HHH
T ss_pred             ----EEEEEEcCcchHHhhc-CCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence                22211  233444444 6666777               88996 5899999998 6654 333455      555


Q ss_pred             HHHHHhhH
Q 008635          247 FVVFLGTS  254 (558)
Q Consensus       247 ~ai~~g~~  254 (558)
                      .++..+.+
T Consensus       438 ~ai~~~~~  445 (482)
T 1ojt_A          438 LAIEMGCD  445 (482)
T ss_dssp             HHHHTTCB
T ss_pred             HHHHCCCC
Confidence            55555544

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.64  E-value=0.00013  Score=77.76  Aligned_cols=93  Identities=14%  Similarity=-0.016  Sum_probs=67.0

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCccccc---cccccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSA---GSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a---~~~~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y  186 (558)
                      .+..|.+|||.+|+|++| ....+.+.....   ......+++|++|+.++..|+++          +........++.|
T Consensus       343 ~~~~A~~qg~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~----------~~~~~~~~~~~~~  411 (490)
T 2bc0_A          343 LASNAVRTGIVAAHNACG-TDLEGIGVQGSNGISIYGLHMVSTGLTLEKAKRLGFDA----------AVTEYTDNQKPEF  411 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTT-CCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCE----------EEEEEEEESSCTT
T ss_pred             cHHHHHHHHHHHHHHhcC-CCCCCCCcccceEEEECCcEeEEeeCCHHHHHHcCCce----------EEEEEecCCcccc
Confidence            567899999999999995 554555544332   22367899999999999988766          3322333456667


Q ss_pred             cC-CCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHH
Q 008635          187 YY-GTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAI  229 (558)
Q Consensus       187 ~p-Ga~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~  229 (558)
                      +| +.....+               |+++++ +|+++|+|+ +|-
T Consensus       412 ~~~~~~~~~~---------------kl~~~~~~~~ilG~~~-~g~  440 (490)
T 2bc0_A          412 IEHGNFPVTI---------------KIVYDKDSRRILGAQM-AAR  440 (490)
T ss_dssp             CCSSCCEEEE---------------EEEEETTTCBEEEEEE-EES
T ss_pred             cCCCCceEEE---------------EEEEECCCCEEEEEEE-EcC
Confidence            77 6666777               889964 899999888 543

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=96.54  E-value=0.0029  Score=57.75  Aligned_cols=103  Identities=12%  Similarity=0.077  Sum_probs=56.4

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhh------------hhc-CCCcccccccccccCCCchhhhhhHHhhhcCCccch
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLR------------ERD-GIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELD  338 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef------------~~G-HIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~  338 (558)
                      .++++++..+.+ ..-..|||+|++.|.            ... +|+|.+        ++|+....-....         
T Consensus        29 ~~~~~d~~~L~~-~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~--------~iPv~~~~~~~~~---------   90 (156)
T 2f46_A           29 QLTKADAEQIAQ-LGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFH--------HQPVTARDIQKHD---------   90 (156)
T ss_dssp             CCCGGGHHHHHH-HTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEE--------ECCCCTTTCCHHH---------
T ss_pred             CCCHHHHHHHHH-CCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhhe--------ECccCCCCCCHHH---------
Confidence            577888776653 233589999987662            222 476666        7886532100000         


Q ss_pred             hhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHH-HHcCCCcEEEEcccHHHHHHcCCcee
Q 008635          339 DTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMVTFLVQGGFQSWVKEGLRIK  401 (558)
Q Consensus       339 ~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L-~~~GfknVy~LdGG~~aWkaAGLPV~  401 (558)
                         .......+.  ..+.+|+|||++|.|+..++-++ ...|.+    .+.=+...+..|+.+.
T Consensus        91 ---~~~~~~~l~--~~~~pVlvHC~sG~Rs~~l~al~l~~~g~~----~~~a~~~~~~~g~~l~  145 (156)
T 2f46_A           91 ---VETFRQLIG--QAEYPVLAYCRTGTRCSLLWGFRRAAEGMP----VDEIIRRAQAAGVNLE  145 (156)
T ss_dssp             ---HHHHHHHHH--TSCSSEEEECSSSHHHHHHHHHHHHHTTCC----HHHHHHHHHHTTCCCG
T ss_pred             ---HHHHHHHHH--hCCCCEEEECCCCCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCCcH
Confidence               001111111  14789999999999887544332 445653    2223445556665443

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.46  E-value=0.00038  Score=74.14  Aligned_cols=119  Identities=11%  Similarity=-0.030  Sum_probs=74.9

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC--cccccccc-ccccccchhhHHhhhc-cc-chhhhh
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ--TGGSAGSK-LTNFSTDLKEASSKAT-VA-AVDVLR  167 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~--~~~~a~~~-~t~~stgl~e~~~~~~-~~-~~~~l~  167 (558)
                      |+-++++...    -...+..|.+|||.+|+|++| .......  .+...+.. ...+++||+|+.+++. |. .+    
T Consensus       321 IyA~GD~~~~----~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~----  391 (488)
T 3dgz_A          321 IYAIGDVAEG----RPELTPTAIKAGKLLAQRLFG-KSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHV----  391 (488)
T ss_dssp             EEECGGGBTT----CCCCHHHHHHHHHHHHHHHHS-CCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGE----
T ss_pred             EEEeEEecCC----CCcchhHHHHHHHHHHHHHcC-CCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcE----
Confidence            5556666521    123456799999999999995 4332211  23333333 6689999999999876 32 22    


Q ss_pred             cccccceeeeecCCCceeecCC--------CcccccChhhhhhhhhhhhccceeec--cchhhhHHHHHHHHHHHHHhcC
Q 008635          168 NTIVALEESMTNGASFVVYYYG--------TTKESLPPEIRDALNLYEDRAVKLWR--PVGSALQQQVSVAIEGLERSLG  237 (558)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~y~pG--------a~~~~l~p~~k~~~~~~ee~~k~i~~--~~G~iLgaQ~~vg~~gvdkrid  237 (558)
                            +..      +..|+|.        .....+               |+|++  .+|++||+|+ +|.+ ...+|+
T Consensus       392 ------~~~------~~~~~~~~~~~~~~~~~~g~~---------------k~i~~~~~~~~ilG~~~-~g~~-a~e~i~  442 (488)
T 3dgz_A          392 ------EVY------HAYYKPLEFTVADRDASQCYI---------------KMVCMREPPQLVLGLHF-LGPN-AGEVTQ  442 (488)
T ss_dssp             ------EEE------EEECCCHHHHHTTCCCTTCEE---------------EEEEESSTTCBEEEEEE-EETT-HHHHHH
T ss_pred             ------EEE------EccccchhhhhhccCCCcEEE---------------EEEEecCCCCEEEEEEE-ECCC-HHHHHH
Confidence                  111      2334332        234555               88997  4999999999 7765 456777


Q ss_pred             CCCCCCchHHHHHHhhHH
Q 008635          238 FDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       238 f~~~~PVLa~ai~~g~~~  255 (558)
                            .+++++..+++.
T Consensus       443 ------~~~~ai~~~~t~  454 (488)
T 3dgz_A          443 ------GFALGIKCGASY  454 (488)
T ss_dssp             ------HHHHHHHTTCBH
T ss_pred             ------HHHHHHHCCCCH
Confidence                  666666666554

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.17  E-value=0.00074  Score=71.68  Aligned_cols=118  Identities=7%  Similarity=-0.096  Sum_probs=72.1

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccc--cccCcccccccc-ccccccchhhHHhhhc-cc-chhhhh
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS--SIDQTGGSAGSK-LTNFSTDLKEASSKAT-VA-AVDVLR  167 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~--~~~~~~~~a~~~-~t~~stgl~e~~~~~~-~~-~~~~l~  167 (558)
                      |+-++++...    -...+..|.+|||.+|+|++|+...  .+.. +...+.. ...+++||+|+.+++. |. .+    
T Consensus       321 IyA~GD~~~~----~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~-~p~~~~~~p~~a~vGlte~~a~~~~~~~~~----  391 (483)
T 3dgh_A          321 IYAVGDIIYG----KPELTPVAVLAGRLLARRLYGGSTQRMDYKD-VATTVFTPLEYACVGLSEEDAVKQFGADEI----  391 (483)
T ss_dssp             EEECSTTBTT----SCCCHHHHHHHHHHHHHHHHSCCCCCCCCTT-CCEEECSSSEEEEEECCHHHHHHHHCGGGE----
T ss_pred             EEEEEcccCC----CCccHHHHHHHHHHHHHHHcCCCCCcCCCCC-CCEEEECCCccEEEeCCHHHHHhhCCCCCE----
Confidence            5556666521    1234567999999999999964322  2333 2333333 6689999999999886 32 22    


Q ss_pred             cccccceeeeecCCCceeecC--------CCcccccChhhhhhhhhhhhccceeec-c-chhhhHHHHHHHHHHHHHhcC
Q 008635          168 NTIVALEESMTNGASFVVYYY--------GTTKESLPPEIRDALNLYEDRAVKLWR-P-VGSALQQQVSVAIEGLERSLG  237 (558)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~y~p--------Ga~~~~l~p~~k~~~~~~ee~~k~i~~-~-~G~iLgaQ~~vg~~gvdkrid  237 (558)
                            +..      +..|+|        +.....+               |+|++ . +|++||+|+ +|-+ ...+|+
T Consensus       392 ------~~~------~~~~~~~~~~~~~~~~~~~~~---------------k~i~~~~~~~~ilG~~~-~g~~-a~e~i~  442 (483)
T 3dgh_A          392 ------EVF------HGYYKPTEFFIPQKSVRYCYL---------------KAVAERHGDQRVYGLHY-IGPV-AGEVIQ  442 (483)
T ss_dssp             ------EEE------EEECCCGGGTTTTCCCTTCEE---------------EEEEESSTTCBEEEEEE-EETT-HHHHHH
T ss_pred             ------EEE------EEeecchhhhhhccCCCcEEE---------------EEEEecCCCCEEEEEEE-ECCC-HHHHHH
Confidence                  111      222333        2334455               88996 3 799999999 7764 455666


Q ss_pred             CCCCCCchHHHHHHhhH
Q 008635          238 FDPNDPIVPFVVFLGTS  254 (558)
Q Consensus       238 f~~~~PVLa~ai~~g~~  254 (558)
                            .+++++..+++
T Consensus       443 ------~~~~ai~~~~t  453 (483)
T 3dgh_A          443 ------GFAAALKSGLT  453 (483)
T ss_dssp             ------HHHHHHHTTCB
T ss_pred             ------HHHHHHHCCCC
Confidence                  55555555544

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0014  Score=69.79  Aligned_cols=125  Identities=7%  Similarity=-0.046  Sum_probs=76.0

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcc-----ccccc-cccccccchhhHHhhhc-cc-ch
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTG-----GSAGS-KLTNFSTDLKEASSKAT-VA-AV  163 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~-----~~a~~-~~t~~stgl~e~~~~~~-~~-~~  163 (558)
                      .|+-++++...     ...+..|.+|||.+|+|++| ....|.+..     .+.+. ....+++|++|+.+++. |. .+
T Consensus       316 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~~~~  389 (479)
T 2hqm_A          316 NIYSLGDVVGK-----VELTPVAIAAGRKLSNRLFG-PEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENI  389 (479)
T ss_dssp             TEEECGGGTTS-----SCCHHHHHHHHHHHHHHHHS-CGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGE
T ss_pred             CEEEEEecCCC-----cccHHHHHHHHHHHHHHhcC-CCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCCCcE
Confidence            35556666321     23466899999999999995 332232222     22222 15588999999999877 42 22


Q ss_pred             hhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCC
Q 008635          164 DVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPND  242 (558)
Q Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~  242 (558)
                      .+        -+.-.....++ +++|.....+               |+|+++ +|++||+|+ +|.. ...+|+     
T Consensus       390 ~~--------~~~~~~~~~~~-~~~~~~~~~~---------------kli~~~~~~~ilG~~~-~g~~-a~~~i~-----  438 (479)
T 2hqm_A          390 KV--------YNSKFTAMYYA-MLSEKSPTRY---------------KIVCAGPNEKVVGLHI-VGDS-SAEILQ-----  438 (479)
T ss_dssp             EE--------EEEEECCGGGG-GCSSCCCEEE---------------EEEEETTTTEEEEEEE-ESTT-HHHHHH-----
T ss_pred             EE--------EEEeccHHHHH-hhcCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH-----
Confidence            11        11111222232 3577777888               999964 899999999 7753 566666     


Q ss_pred             CchHHHHHHhhH
Q 008635          243 PIVPFVVFLGTS  254 (558)
Q Consensus       243 PVLa~ai~~g~~  254 (558)
                       .++.++..+.+
T Consensus       439 -~~~~ai~~~~t  449 (479)
T 2hqm_A          439 -GFGVAIKMGAT  449 (479)
T ss_dssp             -HHHHHHHTTCB
T ss_pred             -HHHHHHHCCCC
Confidence             55555554444

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.95  E-value=0.00083  Score=71.17  Aligned_cols=124  Identities=12%  Similarity=0.005  Sum_probs=76.4

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCccccccc-cccccccchhhHHhhhcccchhhhhcccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRNTIV  171 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~~~~  171 (558)
                      |+-++++...     ......|.+|||.+|+|++| ....++..+...+. ....+++|++|+.+++.|++|.+.     
T Consensus       304 Iya~GD~~~~-----~~l~~~A~~~g~~aa~~i~g-~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~-----  372 (464)
T 2eq6_A          304 VYAIGDAARP-----PLLAHKAMREGLIAAENAAG-KDSAFDYQVPSVVYTSPEWAGVGLTEEEAKRAGYKVKVG-----  372 (464)
T ss_dssp             EEECGGGTCS-----SCCHHHHHHHHHHHHHHHTT-CCCCCCCCCCEEECSSSEEEEEECCHHHHHHTTCCEEEE-----
T ss_pred             EEEEeccCCC-----cccHHHHHHHHHHHHHHhcC-CCcccCCCCCeEEECCCCEEEEeCCHHHHHhcCCCEEEE-----
Confidence            5555555421     22456799999999999995 55444443222221 266899999999999999876111     


Q ss_pred             cceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHH
Q 008635          172 ALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVF  250 (558)
Q Consensus       172 ~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~  250 (558)
                         .......+++.++ |.....+               |+++++ +|+++|+|+ +|-. ....|+      .++.++.
T Consensus       373 ---~~~~~~~~~~~~~-~~~~g~~---------------k~~~~~~~~~ilG~~~-~g~~-a~e~i~------~~~~ai~  425 (464)
T 2eq6_A          373 ---KFPLAASGRALTL-GGAEGMV---------------KVVGDEETDLLLGVFI-VGPQ-AGELIA------EAALALE  425 (464)
T ss_dssp             ---EEEGGGCHHHHHT-SCCCCEE---------------EEEEETTTCBEEEEEE-EETT-HHHHHH------HHHHHHH
T ss_pred             ---EEEcCcchhhhhc-CCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHHHH
Confidence               1111233344444 5556667               889965 899999988 6654 233355      5555555


Q ss_pred             HhhH
Q 008635          251 LGTS  254 (558)
Q Consensus       251 ~g~~  254 (558)
                      .+.+
T Consensus       426 ~~~~  429 (464)
T 2eq6_A          426 MGAT  429 (464)
T ss_dssp             TTCB
T ss_pred             CCCC
Confidence            4444

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.92  E-value=0.00099  Score=70.06  Aligned_cols=125  Identities=12%  Similarity=0.027  Sum_probs=76.5

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCccccccc--cccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGS--KLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~--~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++..-     ......|.+|||.+|+|++| ....++...-..+.  ....+++|++|+.+++.|++|.+.+  
T Consensus       302 ~Iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~--  373 (455)
T 1ebd_A          302 NIFAIGDIVPG-----PALAHKASYEGKVAAEAIAG-HPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAK--  373 (455)
T ss_dssp             TEEECGGGSSS-----CCCHHHHHHHHHHHHHHHTS-CCCCCCCSCCCEEECSSSCEEEEECCHHHHHTTTCCEEEEE--
T ss_pred             CEEEEeccCCC-----cccHHHHHHHHHHHHHHHcC-CCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEE--
Confidence            35555555421     22456799999999999995 55555433222221  1568899999999999998762111  


Q ss_pred             cccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHH
Q 008635          170 IVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFV  248 (558)
Q Consensus       170 ~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~a  248 (558)
                            .......++.++ |.....+               |++++ .+|++||+|+ +|.. ....|+      .++.+
T Consensus       374 ------~~~~~~~~~~~~-~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~~-a~e~i~------~~~~a  423 (455)
T 1ebd_A          374 ------FPFAANGRALAL-NDTDGFL---------------KLVVRKEDGVIIGAQI-IGPN-ASDMIA------ELGLA  423 (455)
T ss_dssp             ------EEGGGCHHHHHH-TCCCCEE---------------EEEEETTTTEEEEEEE-ESTT-HHHHHH------HHHHH
T ss_pred             ------EEcCcchHHhhc-CCCcEEE---------------EEEEECCCCEEEEEEE-eCCC-HHHHHH------HHHHH
Confidence                  111223333343 5556667               88996 4899999988 6654 233455      55555


Q ss_pred             HHHhhH
Q 008635          249 VFLGTS  254 (558)
Q Consensus       249 i~~g~~  254 (558)
                      +..+.+
T Consensus       424 i~~~~~  429 (455)
T 1ebd_A          424 IEAGMT  429 (455)
T ss_dssp             HHHTCB
T ss_pred             HHCCCC
Confidence            555544

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.79  E-value=0.0011  Score=70.83  Aligned_cols=124  Identities=10%  Similarity=-0.003  Sum_probs=76.3

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Ccccccc-ccccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAG-SKLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~-~~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++..-     ......|.+|||.+|++++|+....++ ..+...+ .....+++|++|+.+++.|++|      
T Consensus       311 ~IyA~GD~~~~-----~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~------  379 (499)
T 1xdi_A          311 GIYAAGDCTGL-----LPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAA------  379 (499)
T ss_dssp             TEEECSGGGTS-----CSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSSCE------
T ss_pred             CEEEEeccCCC-----cccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCCCE------
Confidence            35555665431     234567999999999999953123322 1222222 1266899999999999999876      


Q ss_pred             cccceeeeec--CCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          170 IVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       170 ~~~~~~~~~~--~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                          +.....  ..+++. ++|.....+               |+++++ +|++||+|+ +|... ...|+      .++
T Consensus       380 ----~~~~~~~~~~~~~~-~~~~~~g~~---------------k~~~~~~~~~ilG~~~-~g~~a-~~~i~------~~~  431 (499)
T 1xdi_A          380 ----RTIMLPLRTNARAK-MSEMRHGFV---------------KIFCRRSTGVVIGGVV-VAPIA-SELIL------PIA  431 (499)
T ss_dssp             ----EEEEEESTTSHHHH-HTTCSSCEE---------------EEEEETTTCBEEEEEE-EETTH-HHHHH------HHH
T ss_pred             ----EEEEEecCccccee-ecCCCceEE---------------EEEEECCCCEEEEEEE-ECCch-HHHHH------HHH
Confidence                222221  233333 357666777               889965 899999988 66542 33355      555


Q ss_pred             HHHHHhhH
Q 008635          247 FVVFLGTS  254 (558)
Q Consensus       247 ~ai~~g~~  254 (558)
                      .++..+.+
T Consensus       432 ~ai~~~~~  439 (499)
T 1xdi_A          432 VAVQNRIT  439 (499)
T ss_dssp             HHHHHTCB
T ss_pred             HHHHCCCC
Confidence            55555544

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.77  E-value=0.0012  Score=69.81  Aligned_cols=109  Identities=12%  Similarity=-0.072  Sum_probs=68.5

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCccccccc--cccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGS--KLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~--~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++...    .......|.+|||.+|+|++| ....++...-..+.  ....+++|++|+.+++.|++|.+.+  
T Consensus       308 ~IyA~GD~~~~----~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~--  380 (468)
T 2qae_A          308 DVYAIGDVVDK----GPMLAHKAEDEGVACAEILAG-KPGHVNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGK--  380 (468)
T ss_dssp             TEEECGGGBSS----SCSCHHHHHHHHHHHHHHHTT-CCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEE--
T ss_pred             CEEEeeccCCC----CCccHhHHHHHHHHHHHHHcC-CCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEE--
Confidence            35555665431    123456799999999999995 55555443222221  1568999999999999998761111  


Q ss_pred             cccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHH
Q 008635          170 IVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIE  230 (558)
Q Consensus       170 ~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~  230 (558)
                            .......++.+ .|.....+               |+++++ +|+++|+|+ +|-.
T Consensus       381 ------~~~~~~~~~~~-~~~~~~~~---------------kl~~~~~~~~ilG~~~-~g~~  419 (468)
T 2qae_A          381 ------FPFNANSRAKA-VSTEDGFV---------------KVLVDKATDRILGVHI-VCTT  419 (468)
T ss_dssp             ------EEGGGCHHHHH-TTCCCCEE---------------EEEEETTTCBEEEEEE-EETT
T ss_pred             ------Eecccchhhhh-cCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC
Confidence                  11112333333 36556667               889964 899999988 5554

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.72  E-value=0.0014  Score=69.12  Aligned_cols=126  Identities=6%  Similarity=-0.015  Sum_probs=77.4

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-cc-Cccccccc-cccccccchhhHHhhhc-c-cchhhh
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-ID-QTGGSAGS-KLTNFSTDLKEASSKAT-V-AAVDVL  166 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-~~-~~~~~a~~-~~t~~stgl~e~~~~~~-~-~~~~~l  166 (558)
                      .|+-++++...     ......|.+|||.+|+|++|+.... .+ ..+.+.+. ....+++|++|+.+++. | ..+.+.
T Consensus       297 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~  371 (450)
T 1ges_A          297 GIYAVGDNTGA-----VELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVY  371 (450)
T ss_dssp             TEEECSGGGTS-----CCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEE
T ss_pred             CEEEEeccCCC-----CccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEE
Confidence            35556665421     2345679999999999999643221 11 12223222 25688999999999887 4 333111


Q ss_pred             hcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          167 RNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                             ... ..+..++ ++++.....+               |+|++ .+|++||+|+ +|-+ ...+|+      .+
T Consensus       372 -------~~~-~~~~~~~-~~~~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~~-a~~~i~------~~  419 (450)
T 1ges_A          372 -------KSS-FTAMYTA-VTTHRQPCRM---------------KLVCVGSEEKIVGIHG-IGFG-MDEMLQ------GF  419 (450)
T ss_dssp             -------EEE-EECHHHH-TSSSCCEEEE---------------EEEEETTTTEEEEEEE-ESTT-HHHHHH------HH
T ss_pred             -------EEE-CchhhHH-HhcCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HH
Confidence                   111 1233333 3677777788               89996 4899999998 7743 566666      55


Q ss_pred             HHHHHHhhH
Q 008635          246 PFVVFLGTS  254 (558)
Q Consensus       246 a~ai~~g~~  254 (558)
                      +.++..+.+
T Consensus       420 ~~ai~~~~t  428 (450)
T 1ges_A          420 AVALKMGAT  428 (450)
T ss_dssp             HHHHHTTCB
T ss_pred             HHHHHCCCC
Confidence            555555544

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.65  E-value=0.00096  Score=70.36  Aligned_cols=107  Identities=10%  Similarity=-0.047  Sum_probs=67.1

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-ccC-cccccc-ccccccccchhhHHhhhcccchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQ-TGGSAG-SKLTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-~~~-~~~~a~-~~~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      .|+-++++...     ......|.+|||.+|+|++|+.... ++. .+...+ .....+++|++|+.+++.|++|     
T Consensus       303 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~-----  372 (464)
T 2a8x_A          303 HIYAIGDVNGL-----LQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDV-----  372 (464)
T ss_dssp             TEEECGGGGCS-----SCSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHTTCCE-----
T ss_pred             CEEEeECcCCC-----ccCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCCCE-----
Confidence            35555665431     2245679999999999999524444 221 111111 1256899999999999999876     


Q ss_pred             ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHH
Q 008635          169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIE  230 (558)
Q Consensus       169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~  230 (558)
                           +....  ....++.++ |.....+               |++++ .+|+++|+|+ +|-.
T Consensus       373 -----~~~~~~~~~~~~~~~~-~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~~  415 (464)
T 2a8x_A          373 -----VVAKFPFTANAKAHGV-GDPSGFV---------------KLVADAKHGELLGGHL-VGHD  415 (464)
T ss_dssp             -----EEEEEEGGGCHHHHHH-TCCCCEE---------------EEEEETTTTEEEEEEE-EETT
T ss_pred             -----EEEEEEcchhhhhhhc-CCCcEEE---------------EEEEECCCCEEEEEEE-ECcC
Confidence                 22211  123333343 5556667               88996 4899999988 5543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.64  E-value=0.0013  Score=69.30  Aligned_cols=108  Identities=9%  Similarity=-0.030  Sum_probs=67.4

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCccccccc--cccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGS--KLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~--~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++..-     ...+..|.+|||.+|+|++| ....++...-..+.  ....+++|++|+.+++.|++|.+.+  
T Consensus       311 ~Iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~--  382 (470)
T 1dxl_A          311 GVYAIGDVIPG-----PMLAHKAEEDGVACVEYLAG-KVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGK--  382 (470)
T ss_dssp             TEEECSTTSSS-----CCCHHHHHHHHHHHHHHHTT-SCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEE--
T ss_pred             CEEEEeccCCC-----CccHHHHHHHHHHHHHHHcC-CCcCCCCCCCCEEEECCCceEEEcCCHHHHHhcCCcEEEEE--
Confidence            34555555421     23456799999999999995 55555443222221  1568999999999999998761111  


Q ss_pred             cccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHH
Q 008635          170 IVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIE  230 (558)
Q Consensus       170 ~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~  230 (558)
                            .......++.++ |.....+               |++++ .+|+++|+|+ +|..
T Consensus       383 ------~~~~~~~~~~~~-~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~~  421 (470)
T 1dxl_A          383 ------FPFMANSRAKAI-DNAEGLV---------------KIIAEKETDKILGVHI-MAPN  421 (470)
T ss_dssp             ------EEGGGCHHHHHH-SCCCCEE---------------EEEEETTTCBEEEEEE-EETT
T ss_pred             ------EecccchHHHhc-CCCcEEE---------------EEEEECCCCEEEEEEE-ECCC
Confidence                  111122333333 5555666               88996 4899999988 5554

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.58  E-value=0.0015  Score=70.01  Aligned_cols=118  Identities=11%  Similarity=0.002  Sum_probs=73.3

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      .|+-++++..     ....+..|.+|||.+|+|++|+ ........+.....   ...+++|++|+.+++.+..+     
T Consensus       324 ~IyA~GD~~~-----~~~l~~~A~~~g~~aa~~i~g~-~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~-----  392 (495)
T 2wpf_A          324 NIYAIGDITD-----RLMLTPVAINEGAALVDTVFGN-KPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKV-----  392 (495)
T ss_dssp             TEEECGGGGC-----SCCCHHHHHHHHHHHHHHHHSS-CCCCCCCSSCEEEECCSSCEEEEECCHHHHHHHSSEE-----
T ss_pred             CEEEEeccCC-----CccCHHHHHHHHHHHHHHhcCC-CCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCE-----
Confidence            3556666652     1235668999999999999953 32222222222222   66899999999998876544     


Q ss_pred             ccccceeeeecCCCceeecC------C-Ccccc-cChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCC
Q 008635          169 TIVALEESMTNGASFVVYYY------G-TTKES-LPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFD  239 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~~~y~p------G-a~~~~-l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~  239 (558)
                           +..      +..|++      + ..... +               |+|++ .+|++||+|+ +|-+ ...+|+  
T Consensus       393 -----~v~------~~~~~~~~~~~~~~~~~~~~~---------------klv~~~~~~~ilG~~~-~g~~-a~~~i~--  442 (495)
T 2wpf_A          393 -----AVY------MSSFTPLMHNISGSKYKKFVA---------------KIVTNHSDGTVLGVHL-LGDG-APEIIQ--  442 (495)
T ss_dssp             -----EEE------EEEECCTHHHHHSCTTCCEEE---------------EEEEETTTCBEEEEEE-ESTT-HHHHHH--
T ss_pred             -----EEE------EEecCchhhhhhcCCCcEEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH--
Confidence                 111      122222      2 33445 6               88996 4899999999 7754 666666  


Q ss_pred             CCCCchHHHHHHhhH
Q 008635          240 PNDPIVPFVVFLGTS  254 (558)
Q Consensus       240 ~~~PVLa~ai~~g~~  254 (558)
                          .++.++..+.+
T Consensus       443 ----~~~~ai~~~~t  453 (495)
T 2wpf_A          443 ----AVGVCLRLNAK  453 (495)
T ss_dssp             ----HHHHHHHTTCB
T ss_pred             ----HHHHHHHCCCC
Confidence                55555555544

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.48  E-value=0.0014  Score=69.12  Aligned_cols=94  Identities=13%  Similarity=-0.026  Sum_probs=60.7

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccc--ccccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee-
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAG--SKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY-  186 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~--~~~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y-  186 (558)
                      .+..|.+|||.+|+|++++ ...++...-..+  .....+++|++|+.++..|++|          ........++..+ 
T Consensus       316 ~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~~~----------~~~~~~~~~~~~~~  384 (467)
T 1zk7_A          316 FVYVAAAAGTRAAINMTGG-DAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIET----------DSRTLTLDNVPRAL  384 (467)
T ss_dssp             CHHHHHHHHHHHHHHHTTC-CCCCCCTTCEEEECSSSEEEEEECCHHHHHHTTCCE----------EEEEEEGGGCHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCC-CcccCCCCCCEEEecCCceEEEecCHHHHHhcCCCe----------EEEEEecccchhhh
Confidence            4667999999999999964 333332221111  1256889999999999999876          2222222222222 


Q ss_pred             cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHH
Q 008635          187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIE  230 (558)
Q Consensus       187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~  230 (558)
                      ..+.....+               |+++++ +|+++|+|+ +|..
T Consensus       385 ~~~~~~~~~---------------kl~~~~~~~~ilG~~~-~g~~  413 (467)
T 1zk7_A          385 ANFDTRGFI---------------KLVIEEGSHRLIGVQA-VAPE  413 (467)
T ss_dssp             HTTCCCCEE---------------EEEEETTTCBEEEEEE-EETT
T ss_pred             hcCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC
Confidence            235555667               889965 899999988 5543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.42  E-value=0.0025  Score=67.55  Aligned_cols=125  Identities=10%  Similarity=0.029  Sum_probs=74.9

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccc---cccCcccccccc-ccccccchhhHHhhhc-ccchhhh
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS---SIDQTGGSAGSK-LTNFSTDLKEASSKAT-VAAVDVL  166 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~---~~~~~~~~a~~~-~t~~stgl~e~~~~~~-~~~~~~l  166 (558)
                      .|+-++++..    . ......|.+|||.+|+|++|+...   .+. .+.+.+.- ...+++|++|+.+++. |..+.+.
T Consensus       296 ~Iya~GD~~~----~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~-~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~  369 (463)
T 2r9z_A          296 GVYALGDITG----R-DQLTPVAIAAGRRLAERLFDGQSERKLDYD-NIPTVVFAHPPLSKVGLSEPEARERLGDVLTVY  369 (463)
T ss_dssp             TEEECGGGGT----S-CCCHHHHHHHHHHHHHHHHSCCTTCCCCCS-SCCEEECCSSCEEEEECCHHHHHHHHCSCEEEE
T ss_pred             CEEEEeecCC----C-cccHHHHHHHHHHHHHHHcCCCCcccCCCC-CCCEEEeCCCCeEEEcCCHHHHHhcCCCCEEEE
Confidence            3555566532    1 234567999999999999963322   122 22222222 5688999999999876 5544211


Q ss_pred             hcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635          167 RNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV  245 (558)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL  245 (558)
                             ... ..+..++ ++++.....+               |+|++ .+|++||+|+ +|.. ...+|+      .+
T Consensus       370 -------~~~-~~~~~~~-~~~~~~~~~~---------------klv~~~~~~~ilG~~~-~g~~-a~~~i~------~~  417 (463)
T 2r9z_A          370 -------ETS-FTPMRYA-LNEHGPKTAM---------------KLVCAGPEQRVVGVHV-IGDG-ADEMLQ------GF  417 (463)
T ss_dssp             -------EEE-ECCGGGT-TSSSCCCEEE---------------EEEEETTTTEEEEEEE-ESTT-GGGTSH------HH
T ss_pred             -------EEE-cccchhh-hhcCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HH
Confidence                   111 1223333 3577777777               88996 5899999998 6643 555555      54


Q ss_pred             HHHHHHhhH
Q 008635          246 PFVVFLGTS  254 (558)
Q Consensus       246 a~ai~~g~~  254 (558)
                      +.++..+.+
T Consensus       418 ~~ai~~~~t  426 (463)
T 2r9z_A          418 AVAVKMGAT  426 (463)
T ss_dssp             HHHHHTTCB
T ss_pred             HHHHHCCCC
Confidence            444444443

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.32  E-value=0.0021  Score=68.01  Aligned_cols=106  Identities=10%  Similarity=-0.057  Sum_probs=67.4

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC-cccccc-ccccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ-TGGSAG-SKLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~-~~~~a~-~~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++..-     ......|.+|||.+|+|++| ....++. .+-..+ .....+++|++|+.+++.|++|      
T Consensus       314 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~------  381 (474)
T 1zmd_A          314 NIYAIGDVVAG-----PMLAHKAEDEGIICVEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEY------  381 (474)
T ss_dssp             TEEECGGGSSS-----CCCHHHHHHHHHHHHHHHTT-CCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCE------
T ss_pred             CEEEeeecCCC-----CccHHHHHHHHHHHHHHhcC-CCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCE------
Confidence            35555665431     23456799999999999995 4433332 122222 1266899999999999999876      


Q ss_pred             cccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHH
Q 008635          170 IVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIE  230 (558)
Q Consensus       170 ~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~  230 (558)
                          +....  ...+++.+ .|.....+               |+++++ +|++||+|+ +|-.
T Consensus       382 ----~~~~~~~~~~~~~~~-~~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~~  424 (474)
T 1zmd_A          382 ----KVGKFPFAANSRAKT-NADTDGMV---------------KILGQKSTDRVLGAHI-LGPG  424 (474)
T ss_dssp             ----EEEEEEGGGCHHHHH-TTCCCCEE---------------EEEEETTTCBEEEEEE-EETT
T ss_pred             ----EEEEEecccchhhhh-cCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC
Confidence                22211  23333333 35556677               889965 899999988 5554

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.04  E-value=0.0027  Score=69.54  Aligned_cols=133  Identities=6%  Similarity=-0.098  Sum_probs=68.0

Q ss_pred             hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC-cccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635           93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ-TGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI  170 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~-~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~  170 (558)
                      |+-.+|+..    ..---..-|++|||++++|++|+.....+- .+-..+.- ..+|++||+|+.+++.++.+.+-.   
T Consensus       353 IyAiGDv~~----~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~---  425 (542)
T 4b1b_A          353 IFAVGDVAE----NVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEV---  425 (542)
T ss_dssp             EEECTTSBT----TCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEE---
T ss_pred             eEEeccccC----CchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEE---
Confidence            555565542    111234578999999999999644332221 11122211 558999999999999987662211   


Q ss_pred             ccce-----ee------eecCCCceeecCCCcccccChhhhhhhhhhhhccceee-c-cchhhhHHHHHHHHHHHHHhcC
Q 008635          171 VALE-----ES------MTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-R-PVGSALQQQVSVAIEGLERSLG  237 (558)
Q Consensus       171 ~~~~-----~~------~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~-~-~~G~iLgaQ~~vg~~gvdkrid  237 (558)
                      ..+.     .+      ++.......++++.....+               |+|. + .+|++||+|+ +|-+. ...|.
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v---------------Kli~~~~~t~~ILGa~i-vG~~A-~ElI~  488 (542)
T 4b1b_A          426 FLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLA---------------KLVCLKNEDNRVIGFHY-VGPNA-GEVTQ  488 (542)
T ss_dssp             EEC-----------------------------CCCE---------------EEEEETTTTTBEEEEEE-ESTTH-HHHHH
T ss_pred             EEeeccchhhhhhhhhhhhhcccccccccCCCceEE---------------EEEEEeCCCCEEEEEEE-ECCCH-HHHHH
Confidence            0000     00      0111112234555666666               7775 5 4899999998 66432 22344


Q ss_pred             CCCCCCchHHHHHHhhHH
Q 008635          238 FDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       238 f~~~~PVLa~ai~~g~~~  255 (558)
                            .+++++..+++.
T Consensus       489 ------~~alAi~~~~t~  500 (542)
T 4b1b_A          489 ------GMALALRLKVKK  500 (542)
T ss_dssp             ------HHHHHHHTCCBH
T ss_pred             ------HHHHHHHcCCCH
Confidence                  444444444443

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.91  E-value=0.0032  Score=67.25  Aligned_cols=125  Identities=10%  Similarity=-0.026  Sum_probs=71.1

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN  168 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~  168 (558)
                      .|+-++++...     ...+..|.+|||.+|+|++|+ ...+....+.....   ...+++|++|+.+++.+..+     
T Consensus       320 ~IyA~GD~~~~-----~~l~~~A~~~g~~aa~~i~g~-~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~~~-----  388 (490)
T 1fec_A          320 NIYAIGDVTDR-----VMLTPVAINEGAAFVDTVFAN-KPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQV-----  388 (490)
T ss_dssp             TEEECGGGGCS-----CCCHHHHHHHHHHHHHHHHSS-CCCCCCCSSCCEEECCSSCEEEEECCHHHHHHHCSEE-----
T ss_pred             CEEEEeccCCC-----ccCHHHHHHHHHHHHHHhcCC-CCCcCCCCCccEEEECCCCeEEEeCCHHHHHhcCCCE-----
Confidence            35566666521     235678999999999999953 32233333333322   56899999999998876544     


Q ss_pred             ccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhcc-ceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635          169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRA-VKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVP  246 (558)
Q Consensus       169 ~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~-k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa  246 (558)
                           +. +     +..|++....+..        ...+--. |+|++ .+|++||+|+ +|.+ ...+|+      .++
T Consensus       389 -----~~-~-----~~~~~~~~~~~~~--------~~~~~~~~kli~~~~~~~ilG~~~-~g~~-a~~~i~------~~~  441 (490)
T 1fec_A          389 -----AV-Y-----ESSFTPLMHNISG--------STYKKFMVRIVTNHADGEVLGVHM-LGDS-SPEIIQ------SVA  441 (490)
T ss_dssp             -----EE-E-----EEEECCHHHHHHS--------CTTCCEEEEEEEETTTTEEEEEEE-ESTT-HHHHHH------HHH
T ss_pred             -----EE-E-----EeecChhhhhhhc--------CCCeEEEEEEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence                 11 1     1222221100000        0000112 66885 4899999998 7754 566666      555


Q ss_pred             HHHHHhhH
Q 008635          247 FVVFLGTS  254 (558)
Q Consensus       247 ~ai~~g~~  254 (558)
                      .++..+.+
T Consensus       442 ~ai~~~~t  449 (490)
T 1fec_A          442 ICLKMGAK  449 (490)
T ss_dssp             HHHHTTCB
T ss_pred             HHHHcCCC
Confidence            55544444

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.47  E-value=0.004  Score=65.77  Aligned_cols=107  Identities=6%  Similarity=-0.100  Sum_probs=66.2

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccc--ccccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAG--SKLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~--~~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++..-     ...+..|.+|||.+|+|++| ....++...-..+  .....+++|++|+.+++.|+++.+.+  
T Consensus       299 ~Iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~--  370 (458)
T 1lvl_A          299 NVWAIGDVAGE-----PMLAHRAMAQGEMVAEIIAG-KARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQ--  370 (458)
T ss_dssp             TEEECGGGGCS-----SCCHHHHHHHHHHHHHHHTT-CCCCCCCSCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEE--
T ss_pred             CEEEeeccCCC-----cccHHHHHHHHHHHHHHhcC-CCccCCCCCCCEEEECCCCeEEEeCCHHHHHHcCCCEEEEE--
Confidence            35555665431     13456799999999999995 5444443321111  12568899999999999998761111  


Q ss_pred             cccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHH
Q 008635          170 IVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAI  229 (558)
Q Consensus       170 ~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~  229 (558)
                            ......+++.++ |.....+               |++++ .+|+++|+|+ +|.
T Consensus       371 ------~~~~~~~~~~~~-~~~~g~~---------------kl~~d~~~~~ilG~~~-vg~  408 (458)
T 1lvl_A          371 ------FPFAANGRAMSL-ESKSGFV---------------RVVARRDNHLILGWQA-VGV  408 (458)
T ss_dssp             ------EEGGGCHHHHHT-TCCCCEE---------------EEEEETTTCBEEEEEE-EET
T ss_pred             ------EECccchhhhhc-CCCcEEE---------------EEEEECCCCEEEEEEE-ECC
Confidence                  111123333333 5555566               88886 5899999888 443

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.43  E-value=0.0042  Score=65.59  Aligned_cols=105  Identities=9%  Similarity=-0.083  Sum_probs=65.1

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc--ccCccccccccccccccchhhHHhhhcccchhhhhcc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS--IDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNT  169 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~--~~~~~~~a~~~~t~~stgl~e~~~~~~~~~~~~l~~~  169 (558)
                      .|+-++++...     ......|.+|||.+|+|++| ....  +..+--.-......+++|++|+.+++.|++|      
T Consensus       319 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~------  386 (478)
T 1v59_A          319 HIKVVGDVTFG-----PMLAHKAEEEGIAAVEMLKT-GHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDY------  386 (478)
T ss_dssp             TEEECGGGSSS-----CCCHHHHHHHHHHHHHHHHH-SCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCE------
T ss_pred             CEEEeeccCCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCCCE------
Confidence            34555555431     12356899999999999995 4332  3222111111266899999999999999876      


Q ss_pred             cccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHH
Q 008635          170 IVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAI  229 (558)
Q Consensus       170 ~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~  229 (558)
                          .....  ...+++.++ |.....+               |+++++ +|+++|+|+ +|.
T Consensus       387 ----~~~~~~~~~~~~~~~~-~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~  428 (478)
T 1v59_A          387 ----KIGKFPFAANSRAKTN-QDTEGFV---------------KILIDSKTERILGAHI-IGP  428 (478)
T ss_dssp             ----EEEEEEGGGCHHHHHT-TCCCCEE---------------EEEEETTTCBEEEEEE-EET
T ss_pred             ----EEEEEecccchhhhhc-CCCcEEE---------------EEEEECCCCEEEEEEE-ECC
Confidence                22111  123334343 4455666               889964 899999888 554

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.40  E-value=0.018  Score=62.86  Aligned_cols=63  Identities=6%  Similarity=-0.022  Sum_probs=40.7

Q ss_pred             hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhc
Q 008635           92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKAT  159 (558)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~  159 (558)
                      .|+-++++....    ...+..|.+|||.+|++++|+ ........+.....   ...+++||+|+.+++.
T Consensus       427 ~VyA~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~  492 (598)
T 2x8g_A          427 NVYAIGDINAGK----PQLTPVAIQAGRYLARRLFAG-ATELTDYSNVATTVFTPLEYGACGLSEEDAIEK  492 (598)
T ss_dssp             TEEECGGGBTTS----CCCHHHHHHHHHHHHHHHHHC-CCCCCCCTTCCEEECSSSCEEEEECCHHHHHHH
T ss_pred             CEEEEeeecCCC----CccHHHHHHhHHHHHHHHhcC-CCcccCCCCCcEEEECCCceEEEeCCHHHHHhh
Confidence            355666664311    224567899999999999964 33333333333322   6688999999998876

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=92.88  E-value=0.01  Score=62.28  Aligned_cols=94  Identities=14%  Similarity=0.031  Sum_probs=58.7

Q ss_pred             hhhhHhhhHhHHHHHhhcCccccccCcccccc--ccccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeec
Q 008635          110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAG--SKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYY  187 (558)
Q Consensus       110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~--~~~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~  187 (558)
                      .+..|.+|||.+|+|++| ....++...-..+  .....+++|++|+.+++.|+++.+.        ........++.++
T Consensus       309 ~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~~~~~~--------~~~~~~~~~~~~~  379 (455)
T 2yqu_A          309 LAHKASEEGIAAVEHMVR-GFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVG--------KFPYSASGRARAM  379 (455)
T ss_dssp             CHHHHHHHHHHHHHHHHH-SCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEE--------EEEGGGCHHHHHH
T ss_pred             CHHHHHHhHHHHHHHHcC-CCccCCCCCCCEEEEcCCceEEEECCHHHHHHcCCCEEEE--------EEEcccchHHHhc
Confidence            455799999999999995 4444433211111  1256789999999999999876111        1111122333333


Q ss_pred             CCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHH
Q 008635          188 YGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAI  229 (558)
Q Consensus       188 pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~  229 (558)
                       |.....+               |++++ .+|+++|+|+ +|.
T Consensus       380 -~~~~~~~---------------k~~~~~~~~~ilG~~~-~g~  405 (455)
T 2yqu_A          380 -GETEGFI---------------KVLAHAKTDRILGVHG-IGA  405 (455)
T ss_dssp             -TCCCCEE---------------EEEEETTTCBEEEEEE-EET
T ss_pred             -CCCcEEE---------------EEEEECCCCEEEEEEE-ECC
Confidence             4444556               88886 5899999887 443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	558
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	2e-05
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	2e-04
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	6e-04
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	0.001
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	0.002

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 24/129 (18%), Positives = 35/129 (27%), Gaps = 20/129 (15%)

Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
           +S     +LL        +DVR  +   +        GA                     
Sbjct: 10  VSVTVAHDLL--LAGHRYLDVRTPEEFSQGHAC----GAINVPYMNR------------- 50

Query: 333 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQS 392
            G       T  + +          +IV    G RS      L   G      + GG+ +
Sbjct: 51  -GASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 109

Query: 393 WVKEGLRIK 401
           W K GL  K
Sbjct: 110 WAKNGLPTK 118

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 31/124 (25%)

Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
           ++     + L+ ++ AVL+D+R                      +               
Sbjct: 7   INVADAHQKLQ-EKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFM------------- 52

Query: 333 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQS 392
                            +     + V+VM   G  SKG A+ L + G  V + + GGF++
Sbjct: 53  -----------------RDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95

Query: 393 WVKE 396
           W ++
Sbjct: 96  WQRQ 99

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 31/142 (21%)

Query: 271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKK 329
           G ++ K    ++  K  + +++D R     +   I            S+ +P      + 
Sbjct: 1   GAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILH----------SLSVP-----EEA 45

Query: 330 LLRG--GRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLR---------- 376
           +  G     ++  L        K   +   V+++D   + +   I  +LR          
Sbjct: 46  ISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWE 105

Query: 377 --KLGVMVTFLVQGGFQSWVKE 396
              +      +++GG+++W+  
Sbjct: 106 SKTVLRNEPLVLEGGYENWLLC 127

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 29/129 (22%)

Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
           L+ +    LL  +  AV++D R  D  +   IP    G      +  +  V         
Sbjct: 26  LAAEEVQALLDARAEAVILDARRFDEYQTMSIP----GGISVPGAELVLRVAELAP---- 77

Query: 333 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFL-VQGGFQ 391
                                 R++VIV  A  TRS    +SL   G+      ++ G  
Sbjct: 78  --------------------DPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTI 117

Query: 392 SWVKEGLRI 400
            W   G ++
Sbjct: 118 GWTLAGQQL 126

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 25/126 (19%)

Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
           LSPK   +LL+   +  LIDVR  D  +  G PD++         +              
Sbjct: 25  LSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL----------- 73

Query: 333 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQS 392
                        +    +  ++  V+       R+    ++LR+ G    +  +GG   
Sbjct: 74  -------------LAKSGLDPEKPVVVFCKTA-ARAALAGKTLREYGFKTIYNSEGGMDK 119

Query: 393 WVKEGL 398
           W++EGL
Sbjct: 120 WLEEGL 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	558
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.87
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.84
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.84
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.84
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.84
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.84
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.79
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.79
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.78
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.78
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.76
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.75
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.69
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.64
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.62
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.61
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.57
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.5
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.3
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.37
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.13
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	93.88
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.69
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.35
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.25
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.04
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.47
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	83.11

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=2.2e-22  Score=181.15  Aligned_cols=108  Identities=27%  Similarity=0.279  Sum_probs=98.0

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++++.++++++++.+|||||++.||+.||||||+        |+|..++...+.++..+                
T Consensus        23 ~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi--------~ip~~~l~~~~~~l~~~----------------   78 (136)
T d1yt8a1          23 TPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGI--------SVPGAELVLRVAELAPD----------------   78 (136)
T ss_dssp             CCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCE--------ECCGGGHHHHHHHHCCS----------------
T ss_pred             CCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCch--------hhhhhHHHHHhhccccc----------------
Confidence            357999999999976677999999999999999999999        99999998888776533                


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCc-EEEEcccHHHHHHcCCceecCCc
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMV-TFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~Gfkn-Vy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                          ++++||+||++|.||..++..|+.+||+| |++|+||+.+|+.+|+|++.+..
T Consensus        79 ----~~~~iV~~C~~g~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~g~~  131 (136)
T d1yt8a1          79 ----PRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHGQT  131 (136)
T ss_dssp             ----TTSEEEEECSSSHHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBCSCC
T ss_pred             ----ccceEEEEcCCCCchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCceeCCC
Confidence                68899999999999999999999999986 99999999999999999998754

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=9.3e-22  Score=169.76  Aligned_cols=100  Identities=22%  Similarity=0.337  Sum_probs=90.0

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..|+++|+.++++ +++++|||||++.||..+|||||+        |+|++++...+.++                    
T Consensus         5 ~~Is~~e~~~~l~-~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~l~~~~~~~--------------------   55 (108)
T d1gmxa_           5 ECINVADAHQKLQ-EKEAVLVDIRDPQSFAMGHAVQAF--------HLTNDTLGAFMRDN--------------------   55 (108)
T ss_dssp             EEECHHHHHHHHH-TTCCEEEECSCHHHHHHCEETTCE--------ECCHHHHHHHHHHS--------------------
T ss_pred             CEeCHHHHHHHHH-CCCeEEEECCCHHHHHhcCCCCcc--------cccchhHHHHhhhc--------------------
Confidence            4699999999996 468999999999999999999999        99999988776653                    


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                        +++++||+||.+|.||..++..|+.+||+||++|+||+.+|+++ +|++.
T Consensus        56 --~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e~  104 (108)
T d1gmxa_          56 --DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEV  104 (108)
T ss_dssp             --CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred             --cccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCcc
Confidence              37899999999999999999999999999999999999999764 88754

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=3e-21  Score=163.37  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=88.4

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      .+|.+|+.+++.++++.+|||||++.||+.+|||||+        |+|.+.+...+..+..                   
T Consensus         3 v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi--------~~~~~~~~~~~~~~~~-------------------   55 (101)
T d1yt8a2           3 VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAA--------NLPLSRLELEIHARVP-------------------   55 (101)
T ss_dssp             EECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCE--------ECCGGGHHHHHHHHSC-------------------
T ss_pred             cCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcc--------cccccchhhhhhhccc-------------------
Confidence            4688999988866678999999999999999999999        9999888776665543                   


Q ss_pred             cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCC
Q 008635          352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL  398 (558)
Q Consensus       352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGL  398 (558)
                       .++++||+||.+|.||..+++.|+++||+|||+|+|||.+|+++|.
T Consensus        56 -~~~~~vv~~~~~g~~s~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          56 -RRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             -CTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             -ccCceeeeccchhhhHHHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence             2678999999999999999999999999999999999999999883

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.84  E-value=2.5e-21  Score=174.34  Aligned_cols=110  Identities=25%  Similarity=0.382  Sum_probs=92.8

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|||+|+.++++++++++|||||++.||+.+|||++.++.     ++|...+...+....                  
T Consensus        22 ~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~-----~ip~~~l~~~~~~~~------------------   78 (137)
T d1qxna_          22 MVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYK-----HMSRGKLEPLLAKSG------------------   78 (137)
T ss_dssp             SEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEE-----ECCTTTSHHHHHHHC------------------
T ss_pred             CCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccc-----cCCcccccccccccc------------------
Confidence            457999999999976678999999999999999965543111     789887766654432                  


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK  404 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~  404 (558)
                        ++++++|||||++|.||..++..|+.+||+|||+|+||+.+|+++|+|+....
T Consensus        79 --~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~~  131 (137)
T d1qxna_          79 --LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS  131 (137)
T ss_dssp             --CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECCC
T ss_pred             --cCcccceeeeecccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCCC
Confidence              24789999999999999999999999999999999999999999999998743

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=4.2e-21  Score=175.94  Aligned_cols=107  Identities=16%  Similarity=0.270  Sum_probs=96.0

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++++.++++ +++++|||||++.||+.||||||+        ++|..++......+.                  
T Consensus         4 ~~~Is~~el~~~l~-~~~~~ivDvR~~~e~~~ghIpga~--------~~~~~~~~~~~~~~~------------------   56 (157)
T d1yt8a3           4 ADTIDPTTLADWLG-EPGTRVLDFTASANYAKRHIPGAA--------WVLRSQLKQALERLG------------------   56 (157)
T ss_dssp             CCEECHHHHHHHTT-STTEEEEECSCHHHHHHCBCTTCE--------ECCGGGHHHHHHHHC------------------
T ss_pred             CCEECHHHHHHHHh-CCCeEEEEeCCHHHHhhcccccce--------ecccccccccccccc------------------
Confidence            35799999999994 568999999999999999999999        999988877665443                  


Q ss_pred             hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCccc
Q 008635          350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSET  407 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~~  407 (558)
                          ++++||+||.+|.||..+++.|..+||++|++|+||+.+|+++|+|++.+....
T Consensus        57 ----~~~~vv~~c~~g~rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~~~~~~  110 (157)
T d1yt8a3          57 ----TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGESLL  110 (157)
T ss_dssp             ----CCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSSCCB
T ss_pred             ----cCcceeeccCCcchHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcCCCCCC
Confidence                688999999999999999999999999999999999999999999999866543

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=1.2e-21  Score=171.65  Aligned_cols=111  Identities=21%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635          271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK  350 (558)
Q Consensus       271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk  350 (558)
                      ..++++++.++++  .+.+|||||++.||..+|||||+        |+|+.++.......  ...     +..   ....
T Consensus         8 ~~i~~~~a~~l~~--~g~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~--~~~-----~~~---~~~~   67 (119)
T d1tq1a_           8 SSVSVTVAHDLLL--AGHRYLDVRTPEEFSQGHACGAI--------NVPYMNRGASGMSK--NTD-----FLE---QVSS   67 (119)
T ss_dssp             EEEEHHHHHHHHH--HTCCEEEESCHHHHHHCCBTTBE--------ECCSCCCSTTTCCC--TTT-----HHH---HHTT
T ss_pred             CccCHHHHHHHHH--CcCEEEECCCHHHHHcCCCCCcc--------chhhcccccccccc--cHH-----HHH---HHHH
Confidence            4688899999885  46789999999999999999999        88865432211000  000     000   0112


Q ss_pred             ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCcee
Q 008635          351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIK  401 (558)
Q Consensus       351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~  401 (558)
                      .++++++||+||++|.||..+++.|+++||+||++|+|||.+|.++|+|++
T Consensus        68 ~~~~~~~iv~~C~~G~rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          68 HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             TCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             hcCCCcEEEEEcCCcCcHHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            345789999999999999999999999999999999999999999999986

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=5.4e-20  Score=165.45  Aligned_cols=114  Identities=15%  Similarity=0.117  Sum_probs=90.8

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhh--------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA  343 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~--------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a  343 (558)
                      .++.+++.+.+ ++++.+|||+|++.||.        .||||||+        |+|+.++...-..+ +...++...+. 
T Consensus        13 ~~s~d~l~~~l-~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAi--------nip~~~~~~~~~~~-~~~~~l~~~~~-   81 (136)
T d1e0ca2          13 TASRDYLLGRL-GAADLAIWDARSPQEYRGEKVLAAKGGHIPGAV--------NFEWTAAMDPSRAL-RIRTDIAGRLE-   81 (136)
T ss_dssp             BCCHHHHHHHT-TCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCE--------ECCGGGGEEGGGTT-EECTTHHHHHH-
T ss_pred             eEcHHHHHHhh-CCCCeEEEECcChHHhcccccccccCCcchhHh--------hhhhhhhhcccccc-chhHHHhhhhh-
Confidence            68999999998 46789999999999995        68999999        99987764432222 22223322221 


Q ss_pred             HHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCcee
Q 008635          344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIK  401 (558)
Q Consensus       344 a~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~  401 (558)
                           -.+++++++||+||++|.||..+++.|+.+||+||++|+|||..|.+ .++|++
T Consensus        82 -----~~gi~~~~~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          82 -----ELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             -----HTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             -----hcccCCCCceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence                 23567899999999999999999999999999999999999999966 588875

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.79  E-value=6.3e-20  Score=163.25  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=89.7

Q ss_pred             CcccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635          270 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       270 ~~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      ...|+++++.+++.+. ++.+|||||+++||+.+|||||+        |+|..++......+..                
T Consensus        22 ~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai--------~~p~~~~~~~~~~~~~----------------   77 (130)
T d1yt8a4          22 VERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSR--------STPGGQLVQETDHVAS----------------   77 (130)
T ss_dssp             CEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCE--------ECCHHHHHHSHHHHCC----------------
T ss_pred             CcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCcc--------cccccccccccccccC----------------
Confidence            4679999999999642 35799999999999999999999        9999988776655432                


Q ss_pred             hhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635          349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                          .++++||+||.+|.||..++..|+++|| +||+|+||+.+|...+.....
T Consensus        78 ----~~~~~ivl~C~~G~rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~g~~~~  126 (130)
T d1yt8a4          78 ----VRGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSA  126 (130)
T ss_dssp             ----SBTCEEEEECSSSSHHHHHHHHHHHTTC-EEEEECSCCGGGCCBCSSCCC
T ss_pred             ----CccceEEeecCCCccHHHHHHHHHHcCC-CeEEEcCchHHHHHhcCCCCC
Confidence                3789999999999999999999999999 799999999999887755444

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.78  E-value=2.3e-19  Score=157.47  Aligned_cols=122  Identities=14%  Similarity=0.124  Sum_probs=88.7

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI  351 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg  351 (558)
                      .|+++|+.+++ ++++.+|||||+++||..||||||+        ++|...+.........  ........+ ......+
T Consensus        10 lIs~~el~~~l-~~~~~viiDvR~~~ey~~gHIpgA~--------~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~   77 (135)
T d1e0ca1          10 VIEPADLQARL-SAPELILVDLTSAARYAEGHIPGAR--------FVDPKRTQLGQPPAPG--LQPPREQLE-SLFGELG   77 (135)
T ss_dssp             EECHHHHHTTT-TCTTEEEEECSCHHHHHHCBSTTCE--------ECCGGGGSCCCTTCTT--SCCCHHHHH-HHHHHHT
T ss_pred             EeeHHHHHHHh-cCCCeEEEECCCHHHHhcccCcccc--------ccchhhhhhcccccch--hhcchhhhh-hhhcccc
Confidence            48999999998 4678999999999999999999999        8887665432111100  000011111 1112233


Q ss_pred             cCCCcEEEEEeC-CChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          352 VQDRSKVIVMDA-DGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       352 l~kdk~VVVyC~-sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      ...+..+|+||. .|.++.++++.|+.+||+||++|+|||.+|+++|+|++++.+
T Consensus        78 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~~~p  132 (135)
T d1e0ca1          78 HRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELP  132 (135)
T ss_dssp             CCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             ccccccccccccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCCCCC
Confidence            445666767654 566899999999999999999999999999999999998655

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=5.4e-20  Score=167.38  Aligned_cols=120  Identities=18%  Similarity=0.218  Sum_probs=91.0

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeC----------ChhhhhhcCCCcccccccccccCCCchhhhhhHHhh---hcCCccch
Q 008635          272 DLSPKSTLELLRGKENAVLIDVR----------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKL---LRGGRELD  338 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVR----------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL---~~~~~~L~  338 (558)
                      -|+++++.+.| ++++.+|||+|          ..++|..||||||+        ++|...+.......   .+....+.
T Consensus         4 lVs~~wL~~~L-~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi--------~~~~~~~~~~~~~~~~~~p~~~~~~   74 (147)
T d1urha1           4 FVGADWLAEHI-DDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAV--------FFDIEALSDHTSPLPHMLPRPETFA   74 (147)
T ss_dssp             EECHHHHHTTT-TCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCE--------ECCGGGGSCSSSSSSSCCCCHHHHH
T ss_pred             cCcHHHHHHHh-CCCCeEEEEeeCCCCCccCccHHHHHHhCCccccE--------EeehhhhccccccccccCCCHHHHH
Confidence            48999999988 46789999999          34689999999999        77766554322211   11111111


Q ss_pred             hhHHHHHHhhhhccCCCcEEEEEeCCC-hhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCcc
Q 008635          339 DTLTAAVIRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSE  406 (558)
Q Consensus       339 ~~l~aa~i~~Lkgl~kdk~VVVyC~sG-~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~  406 (558)
                           ..+ .-.++.++++||+||..+ .++.+++++|+.+||+||++|+||+.+|+++|+|++.+.+.
T Consensus        75 -----~~l-~~~Gi~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~~~~~  137 (147)
T d1urha1          75 -----VAM-RELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVE  137 (147)
T ss_dssp             -----HHH-HHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCCC
T ss_pred             -----HHH-HHhCcCCCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccCCCCC
Confidence                 111 223667899999999765 47899999999999999999999999999999999997654

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=1.2e-19  Score=161.14  Aligned_cols=109  Identities=21%  Similarity=0.333  Sum_probs=89.9

Q ss_pred             CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635          270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      ...|+++|+.++++ +++.+|||||+++||+.||||||+        |+|+.++...+.++...                
T Consensus         7 v~~I~~~el~~~~~-~~~v~iIDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~----------------   61 (132)
T d1t3ka_           7 ISYITSTQLLPLHR-RPNIAIIDVRDEERNYDGHIAGSL--------HYASGSFDDKISHLVQN----------------   61 (132)
T ss_dssp             SEEECTTTTTTCCC-CTTEEEEEESCSHHHHSSCCCSSE--------EECCSSSSTTHHHHHHT----------------
T ss_pred             CCEECHHHHHHHHh-CCCeEEEEccCHHHHHhccCcccc--------eeeeecccccccccccc----------------
Confidence            45799999998884 578999999999999999999999        99998888777665432                


Q ss_pred             hccCCCcEEEEEeCCCh-hHHHHHHHHH--------HcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          350 KIVQDRSKVIVMDADGT-RSKGIARSLR--------KLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~-RS~~AA~~L~--------~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                        .++++++|+||..|. |+..++..|.        .+||+||++|+|||.+|+++|+|+.....
T Consensus        62 --~~~~~~iv~~c~~~~~~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~  124 (132)
T d1t3ka_          62 --VKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE  124 (132)
T ss_dssp             --CCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSC
T ss_pred             --cccccceEEEeccccccchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccCCC
Confidence              246788999998665 7766665554        46999999999999999999999988543

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=5.3e-19  Score=160.07  Aligned_cols=120  Identities=16%  Similarity=0.150  Sum_probs=89.4

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCC-hhhhhhcCCCcccccccccccCCCchhhhh-hHHhhhcCCccchhhHHHHHHhhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRH-EDLRERDGIPDLRRGARFRYASVYLPEVGG-SVKKLLRGGRELDDTLTAAVIRNL  349 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRs-p~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~-~l~eL~~~~~~L~~~l~aa~i~~L  349 (558)
                      .||++++.+.+ ++++.+|||||+ +++|..||||||+        ++|+.+... ...........++.     .+. -
T Consensus         8 lVs~~~l~~~l-~~~~v~iiDvr~~~~~y~~gHIPgAi--------~~~~~~~~~~~~~~~l~~~~~l~~-----~~~-~   72 (143)
T d1uara1           8 LVSTDWVQEHL-EDPKVRVLEVDEDILLYDTGHIPGAQ--------KIDWQRDFWDPVVRDFISEEEFAK-----LME-R   72 (143)
T ss_dssp             EECHHHHHTTT-TCTTEEEEEECSSTTHHHHCBCTTCE--------EECHHHHHBCSSSSSBCCHHHHHH-----HHH-H
T ss_pred             cCcHHHHHHHh-CCCCeEEEECCCCHHHHhcCCCCCcc--------cccccccccccccccchhhHHHHH-----Hhh-h
Confidence            58999999988 467899999995 7889999999999        777543221 00001111111111     111 1


Q ss_pred             hccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCcc
Q 008635          350 KIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSE  406 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~  406 (558)
                      .+++++++||+||..|. ++.+++++|+.+||++|++|+||+.+|+.+|+|++...+.
T Consensus        73 ~Gi~~~~~iVvy~~~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~~~~~  130 (143)
T d1uara1          73 LGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEVPS  130 (143)
T ss_dssp             TTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCCCC
T ss_pred             hccCCCceEEEecCCCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccCCCCC
Confidence            24568999999998876 6889999999999999999999999999999999986554

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=2.2e-18  Score=157.03  Aligned_cols=126  Identities=18%  Similarity=0.220  Sum_probs=91.3

Q ss_pred             CCcccCHHHHHHHHhC---CCCcEEEEeC--------ChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccc
Q 008635          269 YSGDLSPKSTLELLRG---KENAVLIDVR--------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGREL  337 (558)
Q Consensus       269 ~~~~ISp~El~elL~~---~e~avLIDVR--------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L  337 (558)
                      |...||++++.+.|++   +++.+|||+|        ..++|..+|||||+        +++++++.........  ...
T Consensus         6 ~~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv--------~~~~~~~~~~~~~~~~--~~~   75 (149)
T d1rhsa1           6 YRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGAS--------FFDIEECRDKASPYEV--MLP   75 (149)
T ss_dssp             CCSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCE--------ECCTTTSSCTTSSSSS--CCC
T ss_pred             CCCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCce--------eccHHhhcccccchhh--hhh
Confidence            4456899999999963   3478999999        35799999999999        7776655432111100  000


Q ss_pred             hhhHHHHHHhhhhccCCCcEEEEEeCC---ChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635          338 DDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS  405 (558)
Q Consensus       338 ~~~l~aa~i~~Lkgl~kdk~VVVyC~s---G~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~  405 (558)
                      .....+..+ ...++.++++||+||..   +..+.++||+|+.+||+||++|+||+.+|+++|+|++...+
T Consensus        76 ~~~~~~~~l-~~~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~  145 (149)
T d1rhsa1          76 SEAGFADYV-GSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPS  145 (149)
T ss_dssp             CHHHHHHHH-HHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSCC
T ss_pred             hhHHHHHHH-hhhhccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccCCCC
Confidence            111111111 12356789999999975   45889999999999999999999999999999999988654

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=2.6e-18  Score=156.02  Aligned_cols=112  Identities=16%  Similarity=0.080  Sum_probs=87.2

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhh------------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRE------------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDD  339 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~------------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~  339 (558)
                      .++.+|+.+.+. +++.+|||+|+++||.            .||||||+        |+|..++......+ ....++. 
T Consensus        12 i~~~~ev~~~l~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~--------~ip~~~~~~~~~~~-~~~~~l~-   80 (144)
T d1rhsa2          12 LKTYEQVLENLE-SKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSV--------NMPFMNFLTEDGFE-KSPEELR-   80 (144)
T ss_dssp             EECHHHHHHHHH-HCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCE--------ECCGGGGBCTTSCB-CCHHHHH-
T ss_pred             eecHHHHHHHhc-CCCcEEEECCCCHHHcCCCCCCccccceeeehhhhh--------hcchhhhhhhhccc-CCHHHHH-
Confidence            468889988884 5689999999999995            69999999        99987764432211 1111111 


Q ss_pred             hHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635          340 TLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR  399 (558)
Q Consensus       340 ~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP  399 (558)
                           .+..-.+++++++||+||++|.||..+++.|+.+||++|++|+|||..|...+.|
T Consensus        81 -----~~~~~~gi~~~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p  135 (144)
T d1rhsa2          81 -----AMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP  135 (144)
T ss_dssp             -----HHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCG
T ss_pred             -----HHHHHcCCCCCCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCC
Confidence                 1122246778999999999999999999999999999999999999999887643

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=7.2e-18  Score=152.65  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             CCCcEEEEeCChhhhh----------------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635          285 KENAVLIDVRHEDLRE----------------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN  348 (558)
Q Consensus       285 ~e~avLIDVRsp~Ef~----------------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~  348 (558)
                      +++.+|||+|+++||.                .||||||+        |+|+.++...-. ..++..+++      .+..
T Consensus        18 ~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~--------nlp~~~~~~~~~-~~~~~~~~~------~~~~   82 (141)
T d1uara2          18 EGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAK--------NIPWAKAVNPDG-TFKSAEELR------ALYE   82 (141)
T ss_dssp             TTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCE--------ECCGGGGBCTTS-CBCCHHHHH------HHHG
T ss_pred             CCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCcc--------cccccccccccc-ccccHHHHH------HHHH
Confidence            4578999999999996                69999999        999877643211 111111111      1122


Q ss_pred             hhccCCCcEEEEEeCCChhHHHHHHHHHH-cCCCcEEEEcccHHHHHH-cCCceecCC
Q 008635          349 LKIVQDRSKVIVMDADGTRSKGIARSLRK-LGVMVTFLVQGGFQSWVK-EGLRIKELK  404 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~-~GfknVy~LdGG~~aWka-AGLPV~~~~  404 (558)
                      ..++.++++||+||++|.||..+++.|.. +||++|++|+|||..|.+ .++|++++.
T Consensus        83 ~~gi~~d~~vV~yC~~G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          83 PLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             GGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             HhCCCCCCeEEEEecCcchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence            34677899999999999999999999985 899999999999999966 799998853

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=3.9e-17  Score=141.40  Aligned_cols=105  Identities=23%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhh
Q 008635          272 DLSPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDT  340 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~  340 (558)
                      .++.+|+...++ +++++|||+|+++||.           .|||||++        ++|...+....  ...+..+    
T Consensus         5 ~~~~~ev~~~~~-~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~--------~~~~~~~~~~~--~~~~~~~----   69 (120)
T d1urha2           5 VVKVTDVLLASH-ENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVREG--ELKTTDE----   69 (120)
T ss_dssp             BCCHHHHHHHHH-HTCSEEEECSCHHHHSSCCCC----CCSSSCTTCE--------ECCGGGGBSSS--SBCCHHH----
T ss_pred             HccHHHHHHHhh-CCCcEEEeCCCHHHcCcccCCcccccccccccccc--------hhchhhccccc--ccCCHHH----
Confidence            467888888774 5689999999999995           68999999        88876543321  1111001    


Q ss_pred             HHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHH
Q 008635          341 LTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSW  393 (558)
Q Consensus       341 l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aW  393 (558)
                      +.  ....-.+++++++||+||++|.||..+++.|+.+||++|++|+|||.+|
T Consensus        70 ~~--~~~~~~g~~~~~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          70 LD--AIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             HH--HHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             hh--hhhhhcccCccCceEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            11  1112235678999999999999999999999999999999999999988

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.62  E-value=1.5e-16  Score=146.75  Aligned_cols=117  Identities=17%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             ccCHHHHHHHHhCCCCcEEEEeC--------ChhhhhhcCCCcccccccccccCCCchhhhhh-HH-----hhhcCCccc
Q 008635          272 DLSPKSTLELLRGKENAVLIDVR--------HEDLRERDGIPDLRRGARFRYASVYLPEVGGS-VK-----KLLRGGREL  337 (558)
Q Consensus       272 ~ISp~El~elL~~~e~avLIDVR--------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~-l~-----eL~~~~~~L  337 (558)
                      .|+++++.+.+   ++.+|||+|        .+++|..||||||+        +++++..... ..     ...++...+
T Consensus         9 lvs~~~L~~~l---~d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~--------~~d~~~~l~~~~~~~~~~~~lP~~~~~   77 (156)
T d1okga1           9 FLDPSEVADHL---AEYRIVDCRYSLKIKDHGSIQYAKEHVKSAI--------RADVDTNLSKLVPTSTARHPLPPCAEF   77 (156)
T ss_dssp             EECHHHHTTCG---GGSEEEECCCCSSSTTTTTTHHHHCEETTCE--------ECCTTTTSCCCCTTCCCSSCCCCHHHH
T ss_pred             EeCHHHHHHhc---CCCEEEEeeccCCCCcchHHHHHHcCCCCCe--------EcCHHHhcccccCCCCCccccCCHHHH
Confidence            58999988877   358999999        46899999999999        5554321110 00     000111111


Q ss_pred             hhhHHHHHHhhhhccCCCcEEEEEeCC-C-hhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCcc
Q 008635          338 DDTLTAAVIRNLKIVQDRSKVIVMDAD-G-TRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSE  406 (558)
Q Consensus       338 ~~~l~aa~i~~Lkgl~kdk~VVVyC~s-G-~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~  406 (558)
                      .     ..++ -.|++++++||+||+. | ..+.+++|+|+.+|+ +|++|+||+.+|+++|+|++.+.+.
T Consensus        78 ~-----~~l~-~lGI~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t~~p~  141 (156)
T d1okga1          78 I-----DWCM-ANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGEPS  141 (156)
T ss_dssp             H-----HHHH-HTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSCCC
T ss_pred             H-----HHHH-hccccCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCCCCCC
Confidence            1     1121 2356789999999855 3 478999999999998 7999999999999999999886553

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.61  E-value=4.4e-17  Score=146.76  Aligned_cols=106  Identities=15%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             CCCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhhhhHHh--hhcCCccchhhHHHHHH---hh
Q 008635          285 KENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKK--LLRGGRELDDTLTAAVI---RN  348 (558)
Q Consensus       285 ~e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~~~l~e--L~~~~~~L~~~l~aa~i---~~  348 (558)
                      .++.+|||+|+++||.           .||||||+        |+|...+.....+  ..++.    .++.+...   ..
T Consensus        10 ~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAv--------nip~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~   77 (139)
T d1okga2          10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGAR--------NLPYTSHLVTRGDGKVLRSE----EEIRHNIMTVVQG   77 (139)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCE--------ECCGGGGEECCSSSCEECCH----HHHHHHHHTTCC-
T ss_pred             CCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCe--------eccchhhccccccccccCCH----HHhhhhhhhhhhh
Confidence            4688999999999997           79999999        8997654321110  01110    11111111   12


Q ss_pred             hhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceec
Q 008635          349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKE  402 (558)
Q Consensus       349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~  402 (558)
                      ..+++++++||+||.+|.||..+++.|+.+||++|++++|||..|.+ .++|+++
T Consensus        78 ~~~~~~~~~vV~yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~~  132 (139)
T d1okga2          78 AGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMR  132 (139)
T ss_dssp             ----CCCTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHH
T ss_pred             ccCCCCCCeEEEECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCeee
Confidence            23456778999999999999999999999999999999999999965 6788876

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-15  Score=140.15  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=81.1

Q ss_pred             cccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHH
Q 008635          271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV  345 (558)
Q Consensus       271 ~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~  345 (558)
                      +.|+++++.+++++.     ++.+|||||++.||+.||||||+        |+|..+...+.  +......         
T Consensus        23 k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAi--------nip~~~~~~~~--l~~~~~~---------   83 (161)
T d1c25a_          23 KYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAV--------NLHMEEEVEDF--LLKKPIV---------   83 (161)
T ss_dssp             CEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCE--------ECCSHHHHHHH--TTTSCCC---------
T ss_pred             CccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcE--------EcCcHHHHHHH--Hhhhhhh---------
Confidence            459999999999532     36899999999999999999999        99966543221  1111000         


Q ss_pred             HhhhhccCCCcEEEEEeC-CChhHHHHHHHHHHc----------CCCcEEEEcccHHHHHHcCCceec
Q 008635          346 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL----------GVMVTFLVQGGFQSWVKEGLRIKE  402 (558)
Q Consensus       346 i~~Lkgl~kdk~VVVyC~-sG~RS~~AA~~L~~~----------GfknVy~LdGG~~aWkaAGLPV~~  402 (558)
                          ....+...||+||. +|.|+..+++.|+..          ||++||+|+|||.+|.+..-++..
T Consensus        84 ----~~~~~~~~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~p~lc~  147 (161)
T d1c25a_          84 ----PTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCE  147 (161)
T ss_dssp             ----CCTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEE
T ss_pred             ----hhhccCCeEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHCcCccC
Confidence                01124567899997 677999999999754          999999999999999887554444

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.5e-15  Score=129.27  Aligned_cols=111  Identities=15%  Similarity=0.225  Sum_probs=75.3

Q ss_pred             cccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhH--HhhhcCCccchhhHHHHHHh
Q 008635          271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--KKLLRGGRELDDTLTAAVIR  347 (558)
Q Consensus       271 ~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l--~eL~~~~~~L~~~l~aa~i~  347 (558)
                      +.|+|+|+.+++++. ++.+|||+|+++||..+|||||+        |||...+....  ..+...       +......
T Consensus         1 ~~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAi--------nip~~~l~~~~~~~~l~~~-------~~~~~~~   65 (135)
T d2gwfa1           1 GAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSL--------SVPEEAISPGVTASWIEAH-------LPDDSKD   65 (135)
T ss_dssp             CEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCE--------ECCGGGCCTTCCHHHHHHT-------SCHHHHH
T ss_pred             CeECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeE--------EeCHHHcccccchhhhhhh-------hhHHHHH
Confidence            468999999999743 35899999999999999999999        99977665321  111110       0111111


Q ss_pred             hhhccCCCcEEEEEeCCCh-hH-------HHHHHHHH-----HcCCCcEEEEcccHHHHHHc
Q 008635          348 NLKIVQDRSKVIVMDADGT-RS-------KGIARSLR-----KLGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       348 ~Lkgl~kdk~VVVyC~sG~-RS-------~~AA~~L~-----~~GfknVy~LdGG~~aWkaA  396 (558)
                      .+......++||+||..+. ++       ....+.|.     ..|+.+|++|+|||++|.+.
T Consensus        66 ~~~~~~~~~~iV~yd~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          66 TWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             HHHTTTTSSEEEEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             HHhccCCCCeEEEEeCCCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            1223346789999998764 22       12233343     34678999999999999987

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-14  Score=134.72  Aligned_cols=104  Identities=21%  Similarity=0.281  Sum_probs=78.8

Q ss_pred             cccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHH
Q 008635          271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV  345 (558)
Q Consensus       271 ~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~  345 (558)
                      +.|+|+++.+++.+.     ++.+|||||++.||..|||+||+        |+|.+.+..+..  .......        
T Consensus        23 k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAi--------Ni~~~~~~~~~~--~~~~~~~--------   84 (174)
T d1ymka1          23 KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAV--------NLPLERDAESFL--LKSPIAP--------   84 (174)
T ss_dssp             CEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCE--------ECCSHHHHHHHH--HTTTCCC--------
T ss_pred             cEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCcc--------ccCchHHHHHHH--HHhhhhh--------
Confidence            359999999999532     35899999999999999999999        999887654321  1110000        


Q ss_pred             HhhhhccCCCcEEEEEeCC-ChhHHHHHHHHHH----------cCCCcEEEEcccHHHHHHc
Q 008635          346 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRK----------LGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       346 i~~Lkgl~kdk~VVVyC~s-G~RS~~AA~~L~~----------~GfknVy~LdGG~~aWkaA  396 (558)
                          ....+.++||+||.. +.|+..++..|+.          .||++||+|+|||.+|.+.
T Consensus        85 ----~~~~~~~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          85 ----CSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             --------CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             ----hhhccCceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence                011255679999985 5599999999975          4999999999999999775

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.8e-13  Score=118.14  Aligned_cols=114  Identities=20%  Similarity=0.256  Sum_probs=71.6

Q ss_pred             ccCHHHHHHHHhC-CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHH-HHHHhhh
Q 008635          272 DLSPKSTLELLRG-KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT-AAVIRNL  349 (558)
Q Consensus       272 ~ISp~El~elL~~-~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~-aa~i~~L  349 (558)
                      .+|++++.+.++. +++.+|||||++.||..+|||||+        |+|++.+..+-  .......+...+. ......+
T Consensus        17 ~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAi--------ni~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   86 (154)
T d1hzma_          17 SKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAI--------NVAIPGIMLRR--LQKGNLPVRALFTRGEDRDRF   86 (154)
T ss_dssp             BSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCC--------CCCCSSHHHHT--BCCSCCCTTTTSTTSHHHHHH
T ss_pred             ccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCc--------ccCcHHHHhhh--ccCCcccccccCCcHHHHHHH
Confidence            5888999988853 457899999999999999999999        88865542110  0000000000000 0111112


Q ss_pred             hccCCCcEEEEEeCCCh----------hHHHHHHHHHHcCCCcEEEEcccHHHHHHc
Q 008635          350 KIVQDRSKVIVMDADGT----------RSKGIARSLRKLGVMVTFLVQGGFQSWVKE  396 (558)
Q Consensus       350 kgl~kdk~VVVyC~sG~----------RS~~AA~~L~~~GfknVy~LdGG~~aWkaA  396 (558)
                      .+..++++||+||+.|.          +.....+.|...|+ +|++|+|||.+|++.
T Consensus        87 ~~~~~~~~VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          87 TRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             HHSTTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             hhcCCCCeEEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence            23346778999998753          22333444454454 899999999999875

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.37  E-value=3e-09  Score=93.27  Aligned_cols=89  Identities=12%  Similarity=0.147  Sum_probs=70.3

Q ss_pred             Ccccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccc
Q 008635          135 QTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAV  211 (558)
Q Consensus       135 ~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k  211 (558)
                      |++||++.+   +..+++|++|+.+++.|++|          .+......+++.|++|..+..+               |
T Consensus         1 G~~gt~~~~vfd~eiasvGlte~eA~~~g~~~----------~~~~~~~~~~~~~~~~~~~g~~---------------K   55 (126)
T d1nhpa3           1 GVQGSSGLAVFDYKFASTGINEVMAQKLGKET----------KAVTVVEDYLMDFNPDKQKAWF---------------K   55 (126)
T ss_dssp             CBCCCEEEEETTEEEEEEECCHHHHHHHTCCC----------EEEEEEEESSCTTCTTCCEEEE---------------E
T ss_pred             CcccCeEEeEcCccEEEecccHHHHHHCCCCE----------EEEEEecCcchhhcCCCcceeE---------------E
Confidence            688998888   88999999999999999877          5555667789999999999999               9


Q ss_pred             eeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635          212 KLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA  255 (558)
Q Consensus       212 ~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~  255 (558)
                      +|+++ +|++||+|+ +|.+....+|+      .++.++..+.+.
T Consensus        56 li~d~~t~~IlG~~i-vG~~~a~e~I~------~~~~ai~~~~t~   93 (126)
T d1nhpa3          56 LVYDPETTQILGAQL-MSKADLTANIN------AISLAIQAKMTI   93 (126)
T ss_dssp             EEECTTTCBEEEEEE-EESSCCTTHHH------HHHHHHHTTCBH
T ss_pred             EEEECCCCCEEEEEE-EechhHHHHHH------HHHHHHHcCCCH
Confidence            99965 899999999 66544555555      555555555543

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.13  E-value=0.0008  Score=57.84  Aligned_cols=77  Identities=9%  Similarity=-0.055  Sum_probs=50.5

Q ss_pred             ccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHH
Q 008635          146 NFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQ  224 (558)
Q Consensus       146 ~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ  224 (558)
                      .|++|++|+.+++.|++|.+.+         +-...+...+..|.....+               |+|+++ +|++||+|
T Consensus        14 iA~VGlte~eA~~~g~~~~v~~---------~~~~~~~ra~~~~~~~g~v---------------klv~d~~t~~ILG~~   69 (123)
T d1lvla3          14 VVVVGKTPEQASQQGLDCIVAQ---------FPFAANGRAMSLESKSGFV---------------RVVARRDNHLILGWQ   69 (123)
T ss_dssp             EEEEECCHHHHHHTTCCEEEEE---------EEGGGCHHHHHTTCCCCEE---------------EEEEETTTCBEEEEE
T ss_pred             cEEEECCHHHHhhcchhhhcce---------eeccccccceecCcchhhe---------------eeeeecccccceEEE
Confidence            7899999999999998872222         1123444555667777777               889965 89999998


Q ss_pred             HHHHHHHHHHhcCCCCCCCchHHHHHHhhH
Q 008635          225 VSVAIEGLERSLGFDPNDPIVPFVVFLGTS  254 (558)
Q Consensus       225 ~~vg~~gvdkridf~~~~PVLa~ai~~g~~  254 (558)
                      + +|- .....|.      .++.++..+.+
T Consensus        70 i-vG~-~A~elI~------~~~lai~~~~t   91 (123)
T d1lvla3          70 A-VGV-AVSELST------AFAQSLEMGAC   91 (123)
T ss_dssp             E-EET-TGGGHHH------HHHHHHHHTCB
T ss_pred             E-EeC-chhhHHH------HHHHHHHcCCC
Confidence            8 653 3344444      44444444444

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.88  E-value=0.0014  Score=55.94  Aligned_cols=65  Identities=12%  Similarity=-0.019  Sum_probs=43.6

Q ss_pred             ccccchhhHHhhhcccchhhhhcccccceeeee-cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHH
Q 008635          146 NFSTDLKEASSKATVAAVDVLRNTIVALEESMT-NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQ  223 (558)
Q Consensus       146 ~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLga  223 (558)
                      .+++|++|+.+++.|++|          .+... ...+.-.++.|.....+               |+|+++ +|++||+
T Consensus        14 iA~vGlte~~a~~~g~~~----------~~~~~~~~~~~ra~~~~~~~G~v---------------Klv~d~~~~~ilGa   68 (118)
T d1xdia2          14 IAAVGVPQSVIDAGSVAA----------RTIMLPLRTNARAKMSEMRHGFV---------------KIFCRRSTGVVIGG   68 (118)
T ss_dssp             EEEEESCHHHHHHTSSCE----------EEEEEESTTSHHHHHTTCSSCEE---------------EEEEETTTCBEEEE
T ss_pred             heeehhhHHHHHhCcccc----------eeeeecccchhhhhhcccchhhe---------------EEEEecCCCceEEE
Confidence            689999999999999887          22222 12222233456666777               899965 8999999


Q ss_pred             HHHHHHHHHHHhcC
Q 008635          224 QVSVAIEGLERSLG  237 (558)
Q Consensus       224 Q~~vg~~gvdkrid  237 (558)
                      |+ +|-+. ...|.
T Consensus        69 ~i-vG~~A-~elI~   80 (118)
T d1xdia2          69 VV-VAPIA-SELIL   80 (118)
T ss_dssp             EE-EETTH-HHHHH
T ss_pred             EE-EcCcH-HHHHH
Confidence            88 66432 33444

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.69  E-value=0.0022  Score=54.23  Aligned_cols=66  Identities=15%  Similarity=0.049  Sum_probs=45.0

Q ss_pred             ccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHH
Q 008635          146 NFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQ  224 (558)
Q Consensus       146 ~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ  224 (558)
                      .|+.|++|+.+++.|++|++.+         +....+...+..|.....+               |+|++ .+|++||++
T Consensus        12 iA~VGlte~ea~~~g~~~~v~~---------~~~~~~~ra~~~~~~~G~v---------------Kli~~~~~~~iLG~~   67 (115)
T d1ebda3          12 CASVGYFEQQAKDEGIDVIAAK---------FPFAANGRALALNDTDGFL---------------KLVVRKEDGVIIGAQ   67 (115)
T ss_dssp             EEEEECCHHHHHTTTCCEEEEE---------EEGGGCHHHHHHTCCCCEE---------------EEEEETTTTEEEEEE
T ss_pred             eEEEeCCHHHHhhhhhhhhccc---------eecccceeeeecCCCcEEE---------------EEEEeCCcceEEEEE
Confidence            6899999999999998873322         1122333445566666777               88995 489999998


Q ss_pred             HHHHHHHHHHhcC
Q 008635          225 VSVAIEGLERSLG  237 (558)
Q Consensus       225 ~~vg~~gvdkrid  237 (558)
                      + +|-+. ...|.
T Consensus        68 i-vg~~A-~elI~   78 (115)
T d1ebda3          68 I-IGPNA-SDMIA   78 (115)
T ss_dssp             E-ESTTH-HHHHH
T ss_pred             E-EcCCH-HHHHH
Confidence            8 66443 33455

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.35  E-value=0.0023  Score=55.30  Aligned_cols=60  Identities=17%  Similarity=0.058  Sum_probs=41.0

Q ss_pred             cccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHH
Q 008635          145 TNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQ  223 (558)
Q Consensus       145 t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLga  223 (558)
                      ..|++|++|+.+++.|++|.+.+         +-.....-.+..|.....+               |+|++ .+|++||+
T Consensus        13 eiA~VGlte~~A~~~g~~~~v~~---------~~~~~~~ra~~~~~~~g~~---------------Kli~d~~~g~iLGa   68 (128)
T d1ojta3          13 EVAWVGETELSAKASARKITKAN---------FPWAASGRAIANGCDKPFT---------------KLIFDAETGRIIGG   68 (128)
T ss_dssp             CEEEEECCHHHHHHHTCCEEEEE---------EEGGGCHHHHHTTCCSCEE---------------EEEEETTTCBEEEE
T ss_pred             ceeeeeccHHHHHHcCCCcccce---------eeccchhhHHhcCCccceE---------------EEEEeCCCCeEEEE
Confidence            37899999999999998872221         1112222333456666677               88996 58999999


Q ss_pred             HHHHHH
Q 008635          224 QVSVAI  229 (558)
Q Consensus       224 Q~~vg~  229 (558)
                      |+ +|-
T Consensus        69 ~i-vG~   73 (128)
T d1ojta3          69 GI-VGP   73 (128)
T ss_dssp             EE-EST
T ss_pred             EE-Ehh
Confidence            88 554

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.25  E-value=0.0033  Score=53.76  Aligned_cols=77  Identities=9%  Similarity=-0.076  Sum_probs=48.0

Q ss_pred             cccccchhhHHhhhcccchhhhhcccccceeeeecCCC-ceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhH
Q 008635          145 TNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGAS-FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQ  222 (558)
Q Consensus       145 t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLg  222 (558)
                      ..|++|++|+.+++.|++|          ......-.+ .-.+..|.....+               |+++++ +|++||
T Consensus        13 eiA~vGlte~~A~~~g~~~----------~~~~~~~~~~~ra~~~~~~~G~~---------------Klv~d~~~~~ilG   67 (123)
T d1dxla3          13 EVASVGKTEEQVKETGVEY----------RVGKFPFMANSRAKAIDNAEGLV---------------KIIAEKETDKILG   67 (123)
T ss_dssp             EEEEEECCHHHHHHTTCCE----------EEEEEEGGGCHHHHHHSCCCCEE---------------EEEEETTTCBEEE
T ss_pred             ceEEEECCHHHHHHcCCCE----------EEEEEeccccchhhhcCCCcceE---------------EEEEECCCCEEEE
Confidence            4789999999999999877          222222111 1122345555566               889965 899999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCchHHHHHHhhH
Q 008635          223 QQVSVAIEGLERSLGFDPNDPIVPFVVFLGTS  254 (558)
Q Consensus       223 aQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~  254 (558)
                      +++ +|- .....|.      .++.++..+.+
T Consensus        68 ~~i-vG~-~A~elI~------~~~~ai~~~~t   91 (123)
T d1dxla3          68 VHI-MAP-NAGELIH------EAAIALQYDAS   91 (123)
T ss_dssp             EEE-EET-THHHHHH------HHHHHHHTTCB
T ss_pred             EEE-ehh-hHHHHHH------HHHHHHHcCCc
Confidence            988 663 3444555      44444444444

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.04  E-value=0.0039  Score=53.27  Aligned_cols=77  Identities=17%  Similarity=0.043  Sum_probs=46.7

Q ss_pred             cccccchhhHHhhhcccchhhhhcccccceeeeec-CCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhH
Q 008635          145 TNFSTDLKEASSKATVAAVDVLRNTIVALEESMTN-GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQ  222 (558)
Q Consensus       145 t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLg  222 (558)
                      ..|++|++|+.+++.|+++.+          .... ..+.-.+..+.....+               |+|++ .+|++||
T Consensus        13 eiA~VGlte~~a~~~g~~~~~----------~~~~~~~~~ra~~~~~~~G~v---------------Klv~d~~t~~ILG   67 (124)
T d3lada3          13 EIAGVGKTEQALKAEGVAINV----------GVFPFAASGRAMAANDTAGFV---------------KVIADAKTDRVLG   67 (124)
T ss_dssp             EEEEEECCHHHHHHTTCCEEE----------EEEEGGGCHHHHHHTCCCCEE---------------EEEEETTTCBEEE
T ss_pred             ceeEeehhHHHHhhcccccEE----------EEEECccCcchhhcCCCCeEE---------------EEEEECCCCEEEE
Confidence            378999999999999988722          2111 1111112234444556               88996 5899999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCchHHHHHHhhH
Q 008635          223 QQVSVAIEGLERSLGFDPNDPIVPFVVFLGTS  254 (558)
Q Consensus       223 aQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~  254 (558)
                      +|+ +|-+ ....|.      .++.++..+.+
T Consensus        68 a~i-vg~~-A~elI~------~~~~ai~~~~t   91 (124)
T d3lada3          68 VHV-IGPS-AAELVQ------QGAIAMEFGTS   91 (124)
T ss_dssp             EEE-EETT-HHHHHH------HHHHHHHHTCB
T ss_pred             EEE-Eccc-HHHHHH------HHHHHHHcCCC
Confidence            988 6643 334455      44444444444

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.47  E-value=0.0057  Score=52.23  Aligned_cols=67  Identities=9%  Similarity=-0.048  Sum_probs=42.0

Q ss_pred             cccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHH
Q 008635          145 TNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQ  223 (558)
Q Consensus       145 t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLga  223 (558)
                      ..|++|++|+.+++.|+++.+.+         +-.....-....|.....+               |++++ .+|++||+
T Consensus        13 eiA~VGlte~eA~~~g~~~~v~~---------~~~~~~~ra~~~~~~~G~~---------------Kli~d~~~~~ilGa   68 (123)
T d1v59a3          13 EVAWVGKTEEQLKEAGIDYKIGK---------FPFAANSRAKTNQDTEGFV---------------KILIDSKTERILGA   68 (123)
T ss_dssp             EEEEEECCHHHHHHTTCCEEEEE---------EEGGGCHHHHHTTCCCCEE---------------EEEEETTTCBEEEE
T ss_pred             ccEEEECCHHHHHhcccCceEEE---------EecccccchhccCCCcEEE---------------EEEEECCCCEEEEE
Confidence            37899999999999998772221         1111222223345555566               88996 58999998


Q ss_pred             HHHHHHHHHHHhcC
Q 008635          224 QVSVAIEGLERSLG  237 (558)
Q Consensus       224 Q~~vg~~gvdkrid  237 (558)
                      ++ +|- +....|.
T Consensus        69 ~i-vG~-~A~elI~   80 (123)
T d1v59a3          69 HI-IGP-NAGEMIA   80 (123)
T ss_dssp             EE-EET-THHHHHH
T ss_pred             EE-Ech-HHHHHHH
Confidence            87 553 2333444

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=83.11  E-value=0.022  Score=49.33  Aligned_cols=19  Identities=11%  Similarity=0.041  Sum_probs=17.2

Q ss_pred             cccccchhhHHhhhcccch
Q 008635          145 TNFSTDLKEASSKATVAAV  163 (558)
Q Consensus       145 t~~stgl~e~~~~~~~~~~  163 (558)
                      ..|+.|++|+.+++.|++|
T Consensus        13 eiA~VGlTe~eA~~~g~~~   31 (140)
T d1mo9a3          13 EVSFLGMGEEEARAAGHEI   31 (140)
T ss_dssp             EEEEEECCHHHHHHTTCCE
T ss_pred             ccEEEECCHHHHHHcCCCe
Confidence            4789999999999999887