Citrus Sinensis ID: 008647
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 558 | 2.2.26 [Sep-21-2011] | |||||||
| P37116 | 690 | NADPH--cytochrome P450 re | N/A | no | 0.992 | 0.802 | 0.807 | 0.0 | |
| Q9SB48 | 692 | NADPH--cytochrome P450 re | yes | no | 0.976 | 0.787 | 0.778 | 0.0 | |
| Q05001 | 714 | NADPH--cytochrome P450 re | N/A | no | 0.982 | 0.767 | 0.711 | 0.0 | |
| Q9SUM3 | 711 | NADPH--cytochrome P450 re | no | no | 0.971 | 0.762 | 0.697 | 0.0 | |
| P37039 | 678 | NADPH--cytochrome P450 re | yes | no | 0.967 | 0.796 | 0.407 | 1e-123 | |
| Q3SYT8 | 678 | NADPH--cytochrome P450 re | yes | no | 0.949 | 0.781 | 0.409 | 1e-122 | |
| P37040 | 678 | NADPH--cytochrome P450 re | yes | no | 0.965 | 0.794 | 0.401 | 1e-122 | |
| P16435 | 677 | NADPH--cytochrome P450 re | yes | no | 0.949 | 0.782 | 0.410 | 1e-121 | |
| P04175 | 678 | NADPH--cytochrome P450 re | yes | no | 0.949 | 0.781 | 0.409 | 1e-121 | |
| P00388 | 678 | NADPH--cytochrome P450 re | yes | no | 0.965 | 0.794 | 0.401 | 1e-120 |
| >sp|P37116|NCPR_VIGRR NADPH--cytochrome P450 reductase OS=Vigna radiata var. radiata PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/556 (80%), Positives = 499/556 (89%), Gaps = 2/556 (0%)
Query: 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGI 62
S+ + YGDGEP DNAARFYKWFTEG D RG WLQ+L +GVFGLGNRQYEHFNKIG
Sbjct: 136 SLVFFMLATYGDGEPIDNAARFYKWFTEGKDERGIWLQKLTYGVFGLGNRQYEHFNKIGK 195
Query: 63 VLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTA 122
V+DEEL +QG RLV +GLGDDDQ IEDDF+AW+E +W ELDQLLRDEDDANTVSTPYTA
Sbjct: 196 VVDEELAEQGAKRLVAVGLGDDDQSIEDDFSAWKESLWSELDQLLRDEDDANTVSTPYTA 255
Query: 123 AIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLE 182
AI EYRV+IH PT S+ DN+S + NGN FDIHHPCRVNVAV++ELHKP+SDRSCIHLE
Sbjct: 256 AILEYRVVIHDPTAASTYDNHSTVANGNTEFDIHHPCRVNVAVQKELHKPESDRSCIHLE 315
Query: 183 FDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 242
FD+SGT ITY+TGDHVGVY ENC+ETVEE GKLLGQ+L+L FSLHTD +DGT G SL P
Sbjct: 316 FDISGTSITYDTGDHVGVYAENCNETVEETGKLLGQNLDLFFSLHTDKDDGTSLGGSLLP 375
Query: 243 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVV 302
PFPGPC+LRTALARYAD+LNPPRKAAL+ALA HA+EPS+ ERLKFLSSPQGKD+YS+WVV
Sbjct: 376 PFPGPCSLRTALARYADLLNPPRKAALLALATHASEPSD-ERLKFLSSPQGKDEYSKWVV 434
Query: 303 ASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPT 362
SQRSL+EVMAEFPSA PP+GVFFAA+AP LQPRYYSISSSPRFAP RVHVTCALVYGPT
Sbjct: 435 GSQRSLVEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRFAPQRVHVTCALVYGPT 494
Query: 363 PTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPF 422
PTGRIHKGVCSTWMKNAIP E + DCS APIFIRPSNFKLP + S+PIIMVGPGTGLAPF
Sbjct: 495 PTGRIHKGVCSTWMKNAIPSEKSQDCSSAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPF 554
Query: 423 RGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482
RGFLQER ALK+DG QLGPALLFFGCRNR+MDFIYEDEL +F E+G +SELI+AFSREG+
Sbjct: 555 RGFLQERYALKEDGVQLGPALLFFGCRNRQMDFIYEDELKSFVEQGSLSELIVAFSREGA 614
Query: 483 QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAES 542
+KEYVQHKMMDKAA LWSL+S+ GYLYVCGDAKGMARDVHRTLH+IVQEQENVDS+KAE+
Sbjct: 615 EKEYVQHKMMDKAAHLWSLISQGGYLYVCGDAKGMARDVHRTLHSIVQEQENVDSTKAEA 674
Query: 543 IVKKFQMEGRYLRDVW 558
IVKK QM+GRYLRDVW
Sbjct: 675 IVKKLQMDGRYLRDVW 690
|
This enzyme is required for electron transfer from NADP to cytochrome P450. Vigna radiata var. radiata (taxid: 3916) EC: 1EC: .EC: 6EC: .EC: 2EC: .EC: 4 |
| >sp|Q9SB48|NCPR1_ARATH NADPH--cytochrome P450 reductase 1 OS=Arabidopsis thaliana GN=ATR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/546 (77%), Positives = 480/546 (87%), Gaps = 1/546 (0%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YGDGEPTDNAARFYKWFTE N+R LQQL +GVF LGNRQYEHFNKIGIVLDEELCK+G
Sbjct: 148 YGDGEPTDNAARFYKWFTEENERDIKLQQLAYGVFALGNRQYEHFNKIGIVLDEELCKKG 207
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
RL+ +GLGDDDQ IEDDF AW+E +W ELD+LL+DEDD +V+TPYTA IPEYRV+ H
Sbjct: 208 AKRLIEVGLGDDDQSIEDDFNAWKESLWSELDKLLKDEDD-KSVATPYTAVIPEYRVVTH 266
Query: 133 GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITY 192
P T+ SN+ NGN + DIHHPCRV+VAV++ELH +SDRSCIHLEFD+S TGITY
Sbjct: 267 DPRFTTQKSMESNVANGNTTIDIHHPCRVDVAVQKELHTHESDRSCIHLEFDISRTGITY 326
Query: 193 ETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRT 252
ETGDHVGVY EN E VEEAGKLLG SL+L+FS+H D EDG+P S++ PPFPGPCTL T
Sbjct: 327 ETGDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPLESAVPPPFPGPCTLGT 386
Query: 253 ALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312
LARYAD+LNPPRK+AL+ALAA+ATEPSEAE+LK L+SP GKD+YSQW+VASQRSLLEVM
Sbjct: 387 GLARYADLLNPPRKSALVALAAYATEPSEAEKLKHLTSPDGKDEYSQWIVASQRSLLEVM 446
Query: 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVC 372
A FPSA PP+GVFFAA+AP LQPRYYSISSSPR AP RVHVT ALVYGPTPTGRIHKGVC
Sbjct: 447 AAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLAPSRVHVTSALVYGPTPTGRIHKGVC 506
Query: 373 STWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMAL 432
STWMKNA+P E + +CS APIFIR SNFKLP+NPS PI+MVGPGTGLAPFRGFLQERMAL
Sbjct: 507 STWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPSTPIVMVGPGTGLAPFRGFLQERMAL 566
Query: 433 KQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMM 492
K+DG +LG +LLFFGCRNR+MDFIYEDELNNF ++GVISELI+AFSREG+QKEYVQHKMM
Sbjct: 567 KEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKEYVQHKMM 626
Query: 493 DKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGR 552
+KAAQ+W L+ +EGYLYVCGDAKGMARDVHRTLHTIVQEQE V SS+AE+IVKK Q EGR
Sbjct: 627 EKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHTIVQEQEGVSSSEAEAIVKKLQTEGR 686
Query: 553 YLRDVW 558
YLRDVW
Sbjct: 687 YLRDVW 692
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q05001|NCPR_CATRO NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/554 (71%), Positives = 464/554 (83%), Gaps = 6/554 (1%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 68
+ YGDGEPTDNAARFYKWF EGNDRG WL+ L++GVFGLGNRQYEHFNKI V+DE++
Sbjct: 163 ILATYGDGEPTDNAARFYKWFVEGNDRGDWLKNLQYGVFGLGNRQYEHFNKIAKVVDEKV 222
Query: 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYR 128
+QGG R+VPL LGDDDQCIEDDF AWRE VWPELD LLRDEDD TVST YTAAIPEYR
Sbjct: 223 AEQGGKRIVPLVLGDDDQCIEDDFAAWRENVWPELDNLLRDEDD-TTVSTTYTAAIPEYR 281
Query: 129 VMI--HGPTVTSSVDNYSN-MPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 185
V+ ++ S + ++N NGN +D HPCR NVAVR+ELH P SDRSC HL+FD+
Sbjct: 282 VVFPDKSDSLISEANGHANGYANGNTVYDAQHPCRSNVAVRKELHTPASDRSCTHLDFDI 341
Query: 186 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTP-RGSSLTPPF 244
+GTG++Y TGDHVGVY +N ETVEEA +LL E FSLH D EDGTP GSSL PPF
Sbjct: 342 AGTGLSYGTGDHVGVYCDNLSETVEEAERLLNLPPETYFSLHADKEDGTPLAGSSLPPPF 401
Query: 245 PGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVAS 304
P PCTLRTAL RYAD+LN P+K+AL+ALAA+A++P+EA+RLK+L+SP GKD+Y+Q +VA+
Sbjct: 402 P-PCTLRTALTRYADLLNTPKKSALLALAAYASDPNEADRLKYLASPAGKDEYAQSLVAN 460
Query: 305 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT 364
QRSLLEVMAEFPSA PP+GVFFAA+AP LQPR+YSISSSPR AP R+HVTCALVY TP
Sbjct: 461 QRSLLEVMAEFPSAKPPLGVFFAAIAPRLQPRFYSISSSPRMAPSRIHVTCALVYEKTPG 520
Query: 365 GRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRG 424
GRIHKGVCSTWMKNAIPLE + DCSWAPIF+R SNFKLPA+P VP+IM+GPGTGLAPFRG
Sbjct: 521 GRIHKGVCSTWMKNAIPLEESRDCSWAPIFVRQSNFKLPADPKVPVIMIGPGTGLAPFRG 580
Query: 425 FLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK 484
FLQER+ALK++GA+LG A+ FFGCRNR+MD+IYEDELN+F E G +SEL++AFSREG K
Sbjct: 581 FLQERLALKEEGAELGTAVFFFGCRNRKMDYIYEDELNHFLEIGALSELLVAFSREGPTK 640
Query: 485 EYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
+YVQHKM +KA+ +W ++S Y+YVCGDAKGMARDVHRTLHTI QEQ ++DS++AE V
Sbjct: 641 QYVQHKMAEKASDIWRMISDGAYVYVCGDAKGMARDVHRTLHTIAQEQGSMDSTQAEGFV 700
Query: 545 KKFQMEGRYLRDVW 558
K QM GRYLRDVW
Sbjct: 701 KNLQMTGRYLRDVW 714
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This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Catharanthus roseus (taxid: 4058) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9SUM3|NCPR2_ARATH NADPH--cytochrome P450 reductase 2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/548 (69%), Positives = 448/548 (81%), Gaps = 6/548 (1%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YGDGEPTDNAARFYKWFTEGNDRG WL+ LK+GVFGLGNRQYEHFNK+ V+D+ L +QG
Sbjct: 168 YGDGEPTDNAARFYKWFTEGNDRGEWLKNLKYGVFGLGNRQYEHFNKVAKVVDDILVEQG 227
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
RLV +GLGDDDQCIEDDFTAWRE +WPELD +LR+E D V+TPYTAA+ EYRV IH
Sbjct: 228 AQRLVQVGLGDDDQCIEDDFTAWREALWPELDTILREEGD-TAVATPYTAAVLEYRVSIH 286
Query: 133 GPTVTSSVDNYSNMPNGNA--SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGI 190
+ N NM NGN FD HP + NVAV+RELH P+SDRSCIHLEFD++G+G+
Sbjct: 287 DSE--DAKFNDINMANGNGYTVFDAQHPYKANVAVKRELHTPESDRSCIHLEFDIAGSGL 344
Query: 191 TYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTL 250
TYETGDHVGV +N ETV+EA +LL S + FSLH + EDGTP SSL PP PC L
Sbjct: 345 TYETGDHVGVLCDNLSETVDEALRLLDMSPDTYFSLHAEKEDGTPISSSLPPP-FPPCNL 403
Query: 251 RTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 310
RTAL RYA +L+ P+K+AL+ALAAHA++P+EAERLK L+SP GKD+YS+WVV SQRSLLE
Sbjct: 404 RTALTRYACLLSSPKKSALVALAAHASDPTEAERLKHLASPAGKDEYSKWVVESQRSLLE 463
Query: 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKG 370
VMAEFPSA PP+GVFFA VAP LQPR+YSISSSP+ A R+HVTCALVY PTGRIHKG
Sbjct: 464 VMAEFPSAKPPLGVFFAGVAPRLQPRFYSISSSPKIAETRIHVTCALVYEKMPTGRIHKG 523
Query: 371 VCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERM 430
VCSTWMKNA+P E + +CS APIF+R SNFKLP++ VPIIM+GPGTGLAPFRGFLQER+
Sbjct: 524 VCSTWMKNAVPYEKSENCSSAPIFVRQSNFKLPSDSKVPIIMIGPGTGLAPFRGFLQERL 583
Query: 431 ALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHK 490
AL + G +LGP++LFFGCRNRRMDFIYE+EL F E G ++EL +AFSREG KEYVQHK
Sbjct: 584 ALVESGVELGPSVLFFGCRNRRMDFIYEEELQRFVESGALAELSVAFSREGPTKEYVQHK 643
Query: 491 MMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQME 550
MMDKA+ +W+++S+ YLYVCGDAKGMARDVHR+LHTI QEQ ++DS+KAE VK Q
Sbjct: 644 MMDKASDIWNMISQGAYLYVCGDAKGMARDVHRSLHTIAQEQGSMDSTKAEGFVKNLQTS 703
Query: 551 GRYLRDVW 558
GRYLRDVW
Sbjct: 704 GRYLRDVW 711
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This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37039|NCPR_CAVPO NADPH--cytochrome P450 reductase OS=Cavia porcellus GN=POR PE=2 SV=2 | Back alignment and function description |
|---|
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/564 (40%), Positives = 335/564 (59%), Gaps = 24/564 (4%)
Query: 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGI 62
+S+ + YG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN +G
Sbjct: 130 NSLAVFCMATYGEGDPTDNAQDFYDWLQETDLD---LSGVKYAVFGLGNKTYEHFNSMGK 186
Query: 63 VLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTA 122
+D+ L + G R+ LGLGDDD +E+DF WRE WP + + E +T +
Sbjct: 187 YVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEES 240
Query: 123 AIPEYRVMIHGPT-----VTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRS 177
+I +Y +++H T T + + N FD +P V R+L++ ++R
Sbjct: 241 SIRQYELVLHADTDPAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERH 299
Query: 178 CIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRG 237
+HLE D+S + I YE+GDHV VY N V + GK+LG L+++ SL +E+ +
Sbjct: 300 LMHLELDISDSKIRYESGDHVAVYPANDSNLVNQLGKILGADLDVVMSLKNLDEESNKK- 358
Query: 238 SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL--SSPQGKD 295
PFP P T RTAL Y DI NPPR L LA +A+EPSE E+L + SS +GK+
Sbjct: 359 ----HPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEQLHKMASSSGEGKE 414
Query: 296 DYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTC 355
Y WVV ++R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+
Sbjct: 415 LYLTWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICA 473
Query: 356 ALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGP 415
+V T +GRI+KGV ++W++ P NG + P+F+R S F+LP + P+IMVGP
Sbjct: 474 VVVEYETKSGRINKGVATSWLQAKDPAGENGRRALVPMFVRKSQFRLPFKSTTPVIMVGP 533
Query: 416 GTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475
GTG+APF GF+QER L+Q G ++G LL++GCR D++Y +EL F ++G +++L +
Sbjct: 534 GTGVAPFIGFIQERAWLQQQGKEVGETLLYYGCRRSDEDYLYREELAQFHKDGTLTQLNV 593
Query: 476 AFSREGSQKEYVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQEN 534
AFSRE +QK YVQH + LW L+ ++G ++YVCGDA+ MARDV T I E
Sbjct: 594 AFSREQAQKVYVQHLLKRDQEHLWKLIHEDGAHIYVCGDARNMARDVQNTFCNIAAELGG 653
Query: 535 VDSSKAESIVKKFQMEGRYLRDVW 558
++ ++A VKK +GRY DVW
Sbjct: 654 MEHTQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Cavia porcellus (taxid: 10141) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q3SYT8|NCPR_BOVIN NADPH--cytochrome P450 reductase OS=Bos taurus GN=POR PE=2 SV=3 | Back alignment and function description |
|---|
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/554 (40%), Positives = 333/554 (60%), Gaps = 24/554 (4%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E + L +K+ VF LGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQETDVD---LSGVKYAVFALGNKTYEHFNAMGKYVDKRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +M+H
Sbjct: 197 AQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELMVH 250
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 TDMDMAKVYTGEMGRLKSYENQKPPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G++LG L+++ SL+ +E+ S+ PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE-----SNKKHPFPCP 364
Query: 248 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
+ RTAL Y DI NPPR L LA +A+EP+E E+L+ + SS +GK+ Y +WV+ ++
Sbjct: 365 TSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYLRWVLEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+ V T TG
Sbjct: 425 RHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYETKTG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
RI+KGV ++W++ P NG + P+++R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 484 RINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGTGVAPFIGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L+Q G ++G LL++GCR D++Y +EL F ++G +++L +AFSRE QK
Sbjct: 544 IQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAFSREQPQKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + LW L+ + G ++YVCGDA+ MARDV T + IV EQ ++ ++A V
Sbjct: 604 YVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEHAQAVDYV 663
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 664 KKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37040|NCPR_MOUSE NADPH--cytochrome P450 reductase OS=Mus musculus GN=Por PE=1 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/563 (40%), Positives = 332/563 (58%), Gaps = 24/563 (4%)
Query: 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIV 63
S+ + YG+G+PTDNA FY W E + L +KF VFGLGN+ YEHFN +G
Sbjct: 131 SLVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKY 187
Query: 64 LDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAA 123
+D+ L + G R+ LGLGDDD +E+DF WRE WP + + E +T ++
Sbjct: 188 VDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESS 241
Query: 124 IPEYRVMIH-----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSC 178
I +Y +++H T + + N FD +P V R+L++ ++R
Sbjct: 242 IRQYELVVHEDMDTAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHL 300
Query: 179 IHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGS 238
+HLE D+S + I YE+GDHV VY N V + G++LG L+++ SL+ +E+ +
Sbjct: 301 MHLELDISDSKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNNLDEESNKKH- 359
Query: 239 SLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL--SSPQGKDD 296
PFP P T RTAL Y DI NPPR L LA +A+EPSE E L + SS +GK+
Sbjct: 360 ----PFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 415
Query: 297 YSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCA 356
Y WVV ++R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+
Sbjct: 416 YLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAV 474
Query: 357 LVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPG 416
V +GR++KGV ++W++ P NG + P+F+R S F+LP P+ P+IMVGPG
Sbjct: 475 AVEYEAKSGRVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPG 534
Query: 417 TGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476
TG+APF GF+QER L++ G ++G LL++GCR D++Y +EL F ++G +++L +A
Sbjct: 535 TGVAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVA 594
Query: 477 FSREGSQKEYVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENV 535
FSRE + K YVQH + LW L+ + G ++YVCGDA+ MA+DV T + IV E +
Sbjct: 595 FSREQAHKVYVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPM 654
Query: 536 DSSKAESIVKKFQMEGRYLRDVW 558
+ ++A VKK +GRY DVW
Sbjct: 655 EHTQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P16435|NCPR_HUMAN NADPH--cytochrome P450 reductase OS=Homo sapiens GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/553 (41%), Positives = 325/553 (58%), Gaps = 23/553 (4%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E + L +KF VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +++H
Sbjct: 197 AQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVVH 250
Query: 133 GPTVTSSV-----DNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
+ V + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 TDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + GK+LG L+++ SL+ +E+ + PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKK-----HPFPCP 364
Query: 248 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
+ RTAL Y DI NPPR L LA +A+EPSE E L+ + SS +GK+ Y WVV ++
Sbjct: 365 TSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ + PS PPI + P LQ RYYSI+SS + P+ VH+ +V T G
Sbjct: 425 RHILAILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
RI+KGV + W++ P NG + P+F+R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 484 RINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L+Q G ++G LL++GCR D++Y +EL F +G +++L +AFSRE S K
Sbjct: 544 IQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVK 545
YVQH + LW L+ ++YVCGDA+ MARDV T + IV E ++ ++A +K
Sbjct: 604 YVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIK 663
Query: 546 KFQMEGRYLRDVW 558
K +GRY DVW
Sbjct: 664 KLMTKGRYSLDVW 676
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P04175|NCPR_PIG NADPH--cytochrome P450 reductase OS=Sus scrofa GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/554 (40%), Positives = 328/554 (59%), Gaps = 24/554 (4%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQEADVD---LTGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +++H
Sbjct: 197 AQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVVH 250
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 TDMDTAVVYTGEMGRLKSYENQKPPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G++LG L+++ SL+ +E+ R PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSALVNQLGEILGTDLDIVMSLNNLDEESNKRH-----PFPCP 364
Query: 248 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
T RTAL Y DI NPPR L LA +A+EPSE E+L+ + SS +GK+ Y WVV ++
Sbjct: 365 TTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEQLRKMASSSGEGKELYLSWVVEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ ++PS PPI P LQ RYYSI+SS + P+ VH+ +V T +G
Sbjct: 425 RHILAILQDYPSLRPPID-HLCERLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKSG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
R++KGV ++W++ P NG + P+F+R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 484 RVNKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L++ G ++G LL++GCR D++Y +EL F +G ++ L +AFSRE QK
Sbjct: 544 IQERAWLQEQGKEVGETLLYYGCRRSDEDYLYREELAQFHAKGALTRLSVAFSREQPQKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + LW L+ G ++Y+CGDA+ MARDV T IV EQ ++ ++A V
Sbjct: 604 YVQHLLKRDKEHLWKLIHDGGAHIYICGDARNMARDVQNTFCDIVAEQGPMEHAQAVDYV 663
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 664 KKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00388|NCPR_RAT NADPH--cytochrome P450 reductase OS=Rattus norvegicus GN=Por PE=1 SV=3 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/563 (40%), Positives = 332/563 (58%), Gaps = 24/563 (4%)
Query: 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIV 63
S+ + YG+G+PTDNA FY W E + L +KF VFGLGN+ YEHFN +G
Sbjct: 131 SLVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKY 187
Query: 64 LDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAA 123
+D+ L + G R+ LGLGDDD +E+DF WRE WP + + E +T ++
Sbjct: 188 VDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESS 241
Query: 124 IPEYRVMIH-----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSC 178
I +Y +++H T + + N FD +P V R+L++ ++R
Sbjct: 242 IRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQ-GTERHL 300
Query: 179 IHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGS 238
+HLE D+S + I YE+GDHV VY N V + G++LG L+++ SL+ +E+ S
Sbjct: 301 MHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEE-----S 355
Query: 239 SLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL--SSPQGKDD 296
+ PFP P T RTAL Y DI NPPR L LA +A+EPSE E L + SS +GK+
Sbjct: 356 NKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 415
Query: 297 YSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCA 356
Y WVV ++R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+
Sbjct: 416 YLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAV 474
Query: 357 LVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPG 416
V +GR++KGV ++W++ P NG + P+F+R S F+LP + P+IMVGPG
Sbjct: 475 AVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPG 534
Query: 417 TGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476
TG+APF GF+QER L++ G ++G LL++GCR D++Y +EL F ++G +++L +A
Sbjct: 535 TGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVA 594
Query: 477 FSREGSQKEYVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENV 535
FSRE + K YVQH + LW L+ + G ++YVCGDA+ MA+DV T + IV E +
Sbjct: 595 FSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPM 654
Query: 536 DSSKAESIVKKFQMEGRYLRDVW 558
+ ++A VKK +GRY DVW
Sbjct: 655 EHTQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 558 | ||||||
| 356515730 | 691 | PREDICTED: NADPH--cytochrome P450 reduct | 0.985 | 0.795 | 0.833 | 0.0 | |
| 224551850 | 693 | NADPH:cytochrome P450 reductase [Gossypi | 0.985 | 0.793 | 0.836 | 0.0 | |
| 351722725 | 689 | NADPH:P450 reductase [Glycine max] gi|27 | 0.994 | 0.805 | 0.812 | 0.0 | |
| 356508035 | 691 | PREDICTED: NADPH--cytochrome P450 reduct | 0.994 | 0.803 | 0.829 | 0.0 | |
| 71726954 | 687 | cytochrome P450 NADPH-reductase [Petunia | 0.983 | 0.799 | 0.807 | 0.0 | |
| 193290682 | 686 | putative cytochrome reductase [Capsicum | 0.992 | 0.807 | 0.8 | 0.0 | |
| 194245141 | 692 | cytochrome P450 reductase-like protein [ | 0.985 | 0.794 | 0.829 | 0.0 | |
| 357465233 | 692 | NADPH cytochrome P450 reductase [Medicag | 0.985 | 0.794 | 0.829 | 0.0 | |
| 255545978 | 692 | cytochrome P450, putative [Ricinus commu | 0.983 | 0.793 | 0.823 | 0.0 | |
| 476936 | 690 | NADPH-ferrihemoprotein reductase (EC 1.6 | 0.992 | 0.802 | 0.809 | 0.0 |
| >gi|356515730|ref|XP_003526551.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/551 (83%), Positives = 503/551 (91%), Gaps = 1/551 (0%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 67
+ YGDGEPTDNAARFYKWFTEG D RG WLQ L +GVFGLGNRQYEHFNKIG V+DE+
Sbjct: 141 MLATYGDGEPTDNAARFYKWFTEGKDERGTWLQHLTYGVFGLGNRQYEHFNKIGKVVDED 200
Query: 68 LCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEY 127
L +QG RLV GLGDDDQ IEDDF+AW+E +WPELDQLLRDEDDANTVSTPYTAAI EY
Sbjct: 201 LSEQGAKRLVTFGLGDDDQSIEDDFSAWKETLWPELDQLLRDEDDANTVSTPYTAAILEY 260
Query: 128 RVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
RV+IH PT TSS DN+ + NGNA FDIHHPCRVNVAV+RELHKP+SDRSCIHLEFD+SG
Sbjct: 261 RVVIHDPTFTSSYDNHVTVANGNAVFDIHHPCRVNVAVQRELHKPESDRSCIHLEFDISG 320
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 247
TG+TYETGDHVGVY +NCDETVEE GKLLGQ+L+LLFSLHTD EDGT G SL PPFPGP
Sbjct: 321 TGLTYETGDHVGVYADNCDETVEETGKLLGQNLDLLFSLHTDKEDGTSLGGSLLPPFPGP 380
Query: 248 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRS 307
CTLRTALARYAD+LNPPRKAAL+ALA+HA+EPSEAERLKFLSSPQGKD+YS+WVV SQRS
Sbjct: 381 CTLRTALARYADLLNPPRKAALVALASHASEPSEAERLKFLSSPQGKDEYSKWVVGSQRS 440
Query: 308 LLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRI 367
LLEVMAEFPSA PP+GVFFAAVAP LQPRYYSISSSPRFAP RVHVTCALVYGPTPTGRI
Sbjct: 441 LLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPQRVHVTCALVYGPTPTGRI 500
Query: 368 HKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQ 427
HKGVCSTWMKNAIPLE + DCSWAPIFIRPSNFKLP + S+PIIMVGPGTGLAPFRGFLQ
Sbjct: 501 HKGVCSTWMKNAIPLEKSPDCSWAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPFRGFLQ 560
Query: 428 ERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYV 487
ER ALK+ G Q GPA+LFFGCRNRR+DFIYE+EL NF E+G +SELI+AFSREG++KEYV
Sbjct: 561 ERFALKEAGVQQGPAILFFGCRNRRLDFIYEEELKNFVEQGSLSELIVAFSREGAEKEYV 620
Query: 488 QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 547
QHKMMD+AAQLWSL+S+ GYLYVCGDAKGMARDVHRTLHTIVQ+QENVDS+KAE+IVKK
Sbjct: 621 QHKMMDQAAQLWSLISQGGYLYVCGDAKGMARDVHRTLHTIVQQQENVDSTKAEAIVKKL 680
Query: 548 QMEGRYLRDVW 558
QM+GRYLRDVW
Sbjct: 681 QMDGRYLRDVW 691
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224551850|gb|ACN54323.1| NADPH:cytochrome P450 reductase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/550 (83%), Positives = 503/550 (91%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 68
+ YGDGEPTDNAARFYKWFTEGN+R PWLQQL +GVFGLGNRQYEHFNKI VLDE+L
Sbjct: 144 MVATYGDGEPTDNAARFYKWFTEGNERLPWLQQLTYGVFGLGNRQYEHFNKIAKVLDEQL 203
Query: 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYR 128
+QG RL+ +GLGDDDQCIEDDFTAWREL+WPELDQLLRDEDD N STPYTAAIPEYR
Sbjct: 204 SEQGAKRLIEVGLGDDDQCIEDDFTAWRELLWPELDQLLRDEDDENATSTPYTAAIPEYR 263
Query: 129 VMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT 188
V++H P V +NYSN NGNA++D+HHPCRVNVAV+RELHKP+SDRSCIHLEFD+SGT
Sbjct: 264 VVVHDPAVMHVEENYSNKANGNATYDLHHPCRVNVAVQRELHKPESDRSCIHLEFDISGT 323
Query: 189 GITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPC 248
GITYETGDHVGVY +NC ETVEEA +LLGQ L+LLFS+HTDNEDGT GSSL PPF PC
Sbjct: 324 GITYETGDHVGVYADNCVETVEEAARLLGQPLDLLFSIHTDNEDGTSAGSSLPPPFASPC 383
Query: 249 TLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 308
TLR ALARYAD+LNPPRKAALIALAAHATEPSEAE+LKFLSSPQGKD+YSQWVVASQRSL
Sbjct: 384 TLRMALARYADLLNPPRKAALIALAAHATEPSEAEKLKFLSSPQGKDEYSQWVVASQRSL 443
Query: 309 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIH 368
LEVMAEFPSA PP+GVFFAAVAP LQPRYYSISSSPRF P RVHVTCALVYGPTPTGRIH
Sbjct: 444 LEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFVPARVHVTCALVYGPTPTGRIH 503
Query: 369 KGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQE 428
+GVCSTWMKNA+PLE + DCSWAPIFIR SNFKLPA+PSVPIIMVGPGTGLAPFRGFLQE
Sbjct: 504 RGVCSTWMKNAVPLEKSNDCSWAPIFIRQSNFKLPADPSVPIIMVGPGTGLAPFRGFLQE 563
Query: 429 RMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ 488
R+ LK+DGA+LG +LLFFGCRNRRMDFIYEDELNNF E+G +SEL++AFSREG QKEYVQ
Sbjct: 564 RLVLKEDGAELGSSLLFFGCRNRRMDFIYEDELNNFVEQGALSELVVAFSREGPQKEYVQ 623
Query: 489 HKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548
HKMMDKAA +W+L+SK GYLYVCGDAKGMARDVHRTLHTI+QEQENVDSSKAES+VKK Q
Sbjct: 624 HKMMDKAADIWNLISKGGYLYVCGDAKGMARDVHRTLHTIIQEQENVDSSKAESMVKKLQ 683
Query: 549 MEGRYLRDVW 558
M+GRYLRDVW
Sbjct: 684 MDGRYLRDVW 693
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351722725|ref|NP_001236742.1| NADPH:P450 reductase [Glycine max] gi|27261128|gb|AAN85869.1| NADPH:P450 reductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/556 (81%), Positives = 499/556 (89%), Gaps = 1/556 (0%)
Query: 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGI 62
S+ + YGDGEPTDNAARFYKWFTEG D RG WLQQL +GVFGLGNRQYEHFNKIG
Sbjct: 134 SLAFFMLATYGDGEPTDNAARFYKWFTEGKDERGIWLQQLTYGVFGLGNRQYEHFNKIGK 193
Query: 63 VLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTA 122
++DEEL +QG RLVPLGLGDDDQ IEDDF AW+E +W ELDQLLRDEDD NTVSTPY A
Sbjct: 194 IVDEELSEQGAKRLVPLGLGDDDQSIEDDFVAWKESLWSELDQLLRDEDDVNTVSTPYKA 253
Query: 123 AIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLE 182
AIPEYRV+IH TVTS DN+ N+ NGNA FDIHHPCRVN+A +RELHKP+SDRSCIHLE
Sbjct: 254 AIPEYRVVIHDSTVTSCNDNHLNVANGNAVFDIHHPCRVNIAAQRELHKPESDRSCIHLE 313
Query: 183 FDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 242
FD+SGTGI YETGDHVGV+ EN DETVEEAGKLLGQ L+L+FS+HT+NEDGTP GSSL P
Sbjct: 314 FDISGTGIIYETGDHVGVFAENGDETVEEAGKLLGQDLDLVFSIHTNNEDGTPLGSSLPP 373
Query: 243 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVV 302
PFPGPCTLR ALA YAD+LNPPRKA+L+ALAAH +EPSEA+RL FLSSPQGKD+YS+W+V
Sbjct: 374 PFPGPCTLRFALAHYADLLNPPRKASLVALAAHTSEPSEADRLTFLSSPQGKDEYSKWLV 433
Query: 303 ASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPT 362
SQRSLLEVMAEFPSA PP+GVFFAAVAPHLQPRYYSISSSPRF+P +VHVTCALV GPT
Sbjct: 434 GSQRSLLEVMAEFPSAKPPLGVFFAAVAPHLQPRYYSISSSPRFSPQKVHVTCALVCGPT 493
Query: 363 PTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPF 422
PTGRIHKGVCSTWMKN IPLE + DCSWAPIFIR SNFKLPA+ S+PIIMVGPGTGLAPF
Sbjct: 494 PTGRIHKGVCSTWMKNGIPLEKSRDCSWAPIFIRTSNFKLPADHSIPIIMVGPGTGLAPF 553
Query: 423 RGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482
RGFLQER+ALK+D QLGPALLFFGCRNR+MDFIYEDEL NF E+G +SELI+ FSREG
Sbjct: 554 RGFLQERLALKEDAVQLGPALLFFGCRNRQMDFIYEDELKNFMEQGALSELIVTFSREGP 613
Query: 483 QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAES 542
+KEYVQHKMMDKAA LW+L+S+ GYLYVCGDAKGMARDVHRTLHTIVQ+QENVDSSKAE+
Sbjct: 614 EKEYVQHKMMDKAANLWNLISQGGYLYVCGDAKGMARDVHRTLHTIVQQQENVDSSKAEA 673
Query: 543 IVKKFQMEGRYLRDVW 558
IVKK QM+GRYLRDVW
Sbjct: 674 IVKKLQMDGRYLRDVW 689
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508035|ref|XP_003522768.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/556 (82%), Positives = 506/556 (91%), Gaps = 1/556 (0%)
Query: 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGI 62
++ + YGDGEPTDNAARFYKWFTEG D RG LQQL +GVFGLGNRQYEHFNKIG
Sbjct: 136 TVAFFMLATYGDGEPTDNAARFYKWFTEGKDERGTSLQQLTYGVFGLGNRQYEHFNKIGK 195
Query: 63 VLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTA 122
V+DEEL +QG RLV LGLGDDDQ IEDDF+AW+E +WPELD+LLR+EDDANTVSTPYTA
Sbjct: 196 VVDEELSEQGAKRLVTLGLGDDDQSIEDDFSAWKETLWPELDKLLRNEDDANTVSTPYTA 255
Query: 123 AIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLE 182
AI EYRV+IH PTVTSS DN+ N+ NGNA FDIHHPCR NVA++RELHKP+SDRSCIHLE
Sbjct: 256 AILEYRVVIHDPTVTSSYDNHINVANGNAVFDIHHPCRANVAIQRELHKPESDRSCIHLE 315
Query: 183 FDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 242
FD+SGTGITYETGDHVGVY +NC+ETVEEAGKLLGQ+L+LLFSLHTD EDGT G SL P
Sbjct: 316 FDISGTGITYETGDHVGVYADNCNETVEEAGKLLGQNLDLLFSLHTDKEDGTSLGGSLLP 375
Query: 243 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVV 302
PFPGPCTLRTALARYAD+LNPPRKAAL+ALAAHA+E SEAERLKFLSSPQGKD+YS+WVV
Sbjct: 376 PFPGPCTLRTALARYADLLNPPRKAALVALAAHASELSEAERLKFLSSPQGKDEYSKWVV 435
Query: 303 ASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPT 362
SQRSLLEVMAEFPSA PP+GVFFAAVAP LQPRYYSISSSPRFAP RVHVTCALVYGPT
Sbjct: 436 GSQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPQRVHVTCALVYGPT 495
Query: 363 PTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPF 422
PTGRIHKGVCSTWMKNAIPLE + DC WAPIFIRPSNFKLP + S+PIIMVGPGTGLAPF
Sbjct: 496 PTGRIHKGVCSTWMKNAIPLEKSPDCCWAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPF 555
Query: 423 RGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482
RGFLQER ALK+DG QLGPA+LFFGCRNRRMDFIYEDEL NF E+G +SELI+AFSREG+
Sbjct: 556 RGFLQERFALKEDGVQLGPAILFFGCRNRRMDFIYEDELKNFVEQGSLSELIVAFSREGA 615
Query: 483 QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAES 542
+KEYVQHKMMD+AA LWSL+S+ GYLYVCGDAKGMARDVHR LHTIVQ+QENVDS+KAE+
Sbjct: 616 EKEYVQHKMMDQAAHLWSLISQGGYLYVCGDAKGMARDVHRILHTIVQQQENVDSTKAEA 675
Query: 543 IVKKFQMEGRYLRDVW 558
IVKK QM+GRYLRDVW
Sbjct: 676 IVKKLQMDGRYLRDVW 691
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|71726954|gb|AAZ39648.1| cytochrome P450 NADPH-reductase [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/550 (80%), Positives = 498/550 (90%), Gaps = 1/550 (0%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 68
+ YGDGEPTDNAARFYKWFTEG +RG WLQ L +GVFGLGNRQYEHFNKI V+DE+L
Sbjct: 139 MVATYGDGEPTDNAARFYKWFTEGQERGVWLQHLTYGVFGLGNRQYEHFNKIAKVIDEQL 198
Query: 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYR 128
+QGG RLVP+GLGDDDQCIEDDF+AWRE +WPELDQ+LRDEDDAN+ +TPYTAAIPEYR
Sbjct: 199 SEQGGKRLVPVGLGDDDQCIEDDFSAWREQLWPELDQILRDEDDANSAATPYTAAIPEYR 258
Query: 129 VMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT 188
++IH T + D +++M NG ++DIHHPC+VNVAV+RELH P+SDRSCIHLEFD+SGT
Sbjct: 259 LVIHD-TAANPEDKHASMVNGTTAYDIHHPCKVNVAVQRELHTPESDRSCIHLEFDISGT 317
Query: 189 GITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPC 248
GI+YETGDHVGVY ENC+ETVEEA +LLGQSL+L+FS+ TD EDGT G SL PPFPGPC
Sbjct: 318 GISYETGDHVGVYAENCEETVEEAARLLGQSLDLVFSILTDKEDGTALGGSLPPPFPGPC 377
Query: 249 TLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 308
TLR A+ARYAD+LNPPRKA LIALAAHA EPSEAERLKFL+SPQGKDDYS W+VASQRSL
Sbjct: 378 TLRAAIARYADLLNPPRKATLIALAAHAAEPSEAERLKFLASPQGKDDYSTWIVASQRSL 437
Query: 309 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIH 368
LEVMAEFPSA PP+GVFFAAVAP LQPRYYSISSSPRFAP RVHVTCALV GPTPTGRIH
Sbjct: 438 LEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPTRVHVTCALVNGPTPTGRIH 497
Query: 369 KGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQE 428
KGVCSTWMKNA+PLE + +CS APIFIRPSNFKLPA+PS+PI+MVGPGTGLAPFRGFLQE
Sbjct: 498 KGVCSTWMKNAVPLEKSHNCSSAPIFIRPSNFKLPADPSIPIVMVGPGTGLAPFRGFLQE 557
Query: 429 RMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ 488
R ALK+DGAQLGPALLFFGCRNRRMDFIYE+EL +F ++GVISELI+AFSREG QKEYVQ
Sbjct: 558 RAALKEDGAQLGPALLFFGCRNRRMDFIYEEELQSFVDQGVISELIIAFSREGPQKEYVQ 617
Query: 489 HKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548
HKMM+KA+ +WSL+S+EGYLYVCGDAKGMARDVHRTLHTIVQEQE DSSKAE+ VKK Q
Sbjct: 618 HKMMEKASHVWSLISQEGYLYVCGDAKGMARDVHRTLHTIVQEQEKADSSKAEATVKKLQ 677
Query: 549 MEGRYLRDVW 558
M+GRYLRDVW
Sbjct: 678 MDGRYLRDVW 687
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|193290682|gb|ACF17649.1| putative cytochrome reductase [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/555 (80%), Positives = 504/555 (90%), Gaps = 1/555 (0%)
Query: 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIV 63
+I + YGDGEPTDNAARFYKWFTEG +RG WLQ L +GVFGLGNRQYEHFNKIG V
Sbjct: 133 TIAFFMVATYGDGEPTDNAARFYKWFTEGQERGVWLQHLTYGVFGLGNRQYEHFNKIGKV 192
Query: 64 LDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAA 123
+DE+L +QG RLVP+GLGDDDQCIEDDF+AWRE +WPELDQ+LRDEDDA++ STPYTAA
Sbjct: 193 IDEQLSEQGAKRLVPVGLGDDDQCIEDDFSAWREQLWPELDQILRDEDDASSASTPYTAA 252
Query: 124 IPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEF 183
I EYR++IH T+ S D +++M NGN ++DIHHPC+VNVAV+RELH P+SDRSCIHLEF
Sbjct: 253 ILEYRLVIHDTTM-SLEDKHASMANGNTTYDIHHPCKVNVAVQRELHTPESDRSCIHLEF 311
Query: 184 DVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPP 243
D+SGTGI YETGDHVGV+ EN +ETVEEA +LLGQSL+L FS+H D EDGT G SL PP
Sbjct: 312 DISGTGIFYETGDHVGVFAENSEETVEEAARLLGQSLDLTFSIHADKEDGTALGGSLPPP 371
Query: 244 FPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVA 303
FPGPCTLR ALARYAD+LNPPRKA L+ALAAHATEPSEAE+LKFL+SPQGKD+YSQWVVA
Sbjct: 372 FPGPCTLRAALARYADLLNPPRKATLVALAAHATEPSEAEKLKFLASPQGKDEYSQWVVA 431
Query: 304 SQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP 363
SQRSL+EVMAEFPSA PP+GVFFAAVAP LQPRYYSISSSPRFAP RVHVTCALVYGPTP
Sbjct: 432 SQRSLVEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPARVHVTCALVYGPTP 491
Query: 364 TGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFR 423
TGRIHKGVCSTWMKNA+PLE + +CS APIFIRPSNFKLP++PS+PI+MVGPGTGLAPFR
Sbjct: 492 TGRIHKGVCSTWMKNAVPLEKSHNCSSAPIFIRPSNFKLPSDPSIPIVMVGPGTGLAPFR 551
Query: 424 GFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ 483
GFLQER ALK+DGAQLGPALLFFGCRNRRMDFIYE+EL +F ++GVISELI+AFSREG Q
Sbjct: 552 GFLQERAALKEDGAQLGPALLFFGCRNRRMDFIYEEELKSFVDQGVISELIIAFSREGPQ 611
Query: 484 KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESI 543
KEYVQHKMM+KA+++WSL+S++GYLYVCGDAKGMARDVHRTLHTIVQEQEN +SSKAE+I
Sbjct: 612 KEYVQHKMMEKASEVWSLISQDGYLYVCGDAKGMARDVHRTLHTIVQEQENANSSKAEAI 671
Query: 544 VKKFQMEGRYLRDVW 558
VKK QM+GRYLRDVW
Sbjct: 672 VKKLQMDGRYLRDVW 686
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|194245141|gb|ACF35281.1| cytochrome P450 reductase-like protein [Nothapodytes foetida] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/550 (82%), Positives = 497/550 (90%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 68
+ YGDGEPTDNAARFYKWFTE +R PWLQQ +GVFGLGNRQYEHFNKIG V+D++L
Sbjct: 143 MVATYGDGEPTDNAARFYKWFTEEKERKPWLQQFTYGVFGLGNRQYEHFNKIGKVIDQQL 202
Query: 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYR 128
+QG RLVPLGLGDDDQCIEDDF++WRE VW ELDQLLRDEDD NTVSTPYTAAI EYR
Sbjct: 203 SEQGAKRLVPLGLGDDDQCIEDDFSSWRESVWFELDQLLRDEDDVNTVSTPYTAAILEYR 262
Query: 129 VMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT 188
VMIHGPT D YSN+ NGN S+DIHHPCRVNVA++RELHKP+SDRSCIHLEFD+SGT
Sbjct: 263 VMIHGPTTAYVEDKYSNVANGNVSYDIHHPCRVNVAIQRELHKPESDRSCIHLEFDISGT 322
Query: 189 GITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPC 248
GI YETGDHVGVY +NCDETVE A KLL Q L+LLFS+HTD +DGT G SL PPFPGPC
Sbjct: 323 GIKYETGDHVGVYADNCDETVEAAAKLLDQPLDLLFSIHTDKDDGTSLGGSLPPPFPGPC 382
Query: 249 TLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 308
TL TALARYAD+LNPPRKAAL+ALAA+ATEP EAERLKFLSSP GKDDYSQW+VASQRSL
Sbjct: 383 TLCTALARYADLLNPPRKAALVALAAYATEPGEAERLKFLSSPHGKDDYSQWIVASQRSL 442
Query: 309 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIH 368
LEVM EFPSA PP+GVFFAAVAP LQPRYYSISSSPRFAP+RVHVTCALVYGPTP+GRIH
Sbjct: 443 LEVMTEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPNRVHVTCALVYGPTPSGRIH 502
Query: 369 KGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQE 428
KGVCSTWMKN IPLE + +CSWAPIFIRPSNFKLP++PS PIIMVGPGTGLAPFRGFLQE
Sbjct: 503 KGVCSTWMKNTIPLERSSNCSWAPIFIRPSNFKLPSDPSAPIIMVGPGTGLAPFRGFLQE 562
Query: 429 RMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ 488
R ALK++GAQLGPALLFFGCRNRRMDFIYEDELNNF + GVISELILAFSREG +KEYVQ
Sbjct: 563 RFALKENGAQLGPALLFFGCRNRRMDFIYEDELNNFMDSGVISELILAFSREGLKKEYVQ 622
Query: 489 HKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548
HKMM+KA QLW+L+SKEGY+YVCGDAKGMARDVHRTLHTIVQEQENV SS+AE++VKK Q
Sbjct: 623 HKMMEKAVQLWNLISKEGYIYVCGDAKGMARDVHRTLHTIVQEQENVRSSEAEAVVKKLQ 682
Query: 549 MEGRYLRDVW 558
EGRYLRDVW
Sbjct: 683 TEGRYLRDVW 692
|
Source: Nothapodytes foetida Species: Nothapodytes foetida Genus: Nothapodytes Family: Icacinaceae Order: Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465233|ref|XP_003602898.1| NADPH cytochrome P450 reductase [Medicago truncatula] gi|355491946|gb|AES73149.1| NADPH cytochrome P450 reductase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/551 (82%), Positives = 498/551 (90%), Gaps = 1/551 (0%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 67
+ YGDGEPTDNAARFYKWFTEG D RG WLQQL +GVFGLGNRQYEHFNKIG V+D++
Sbjct: 142 MLATYGDGEPTDNAARFYKWFTEGKDERGTWLQQLTYGVFGLGNRQYEHFNKIGKVVDDD 201
Query: 68 LCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEY 127
L +QG RLVPLG+GDDDQ IEDDF AW+E +WPELDQLLRDEDD NTVSTPYTAAI EY
Sbjct: 202 LSEQGAKRLVPLGMGDDDQSIEDDFNAWKESLWPELDQLLRDEDDVNTVSTPYTAAISEY 261
Query: 128 RVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
RV+ H PTVT S +N+ N NG A FDIHHPCR NVAVRRELHKP SDRSCIHLEFDVSG
Sbjct: 262 RVVFHDPTVTPSYENHFNAANGGAVFDIHHPCRANVAVRRELHKPQSDRSCIHLEFDVSG 321
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 247
TG+TYETGDHVGVY +NCDETV+EAGKLLGQ L+LLFSLHTDNEDGT G SL PPFPGP
Sbjct: 322 TGVTYETGDHVGVYADNCDETVKEAGKLLGQDLDLLFSLHTDNEDGTSLGGSLLPPFPGP 381
Query: 248 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRS 307
CT+RTALARYAD+LNPPRKAALIALAAHA+EPSEAERLKFLSSPQGKD+YS+WVV S R+
Sbjct: 382 CTVRTALARYADLLNPPRKAALIALAAHASEPSEAERLKFLSSPQGKDEYSKWVVGSHRT 441
Query: 308 LLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRI 367
LLEVMA+FPSA PP+GVFFAA+AP LQPRYYSISSSPRFAP RVHVTCALV GPTPTGRI
Sbjct: 442 LLEVMADFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRFAPQRVHVTCALVEGPTPTGRI 501
Query: 368 HKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQ 427
HKGVCSTWMKNAIP E + DCSWAPIFIRPSNFKLPA+PS+PIIMVGPGTGLAPFRGFLQ
Sbjct: 502 HKGVCSTWMKNAIPSEESRDCSWAPIFIRPSNFKLPADPSIPIIMVGPGTGLAPFRGFLQ 561
Query: 428 ERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYV 487
ER ALK+DG QLGPALLFFGCRNR+MDFIYE+ELNNF E+G +SELI+AFSREG +KEYV
Sbjct: 562 ERFALKEDGVQLGPALLFFGCRNRQMDFIYEEELNNFVEQGSLSELIVAFSREGPEKEYV 621
Query: 488 QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 547
QHKMMDKA+ WSL+S+ GYLYVCGDAKGMARDVHRTLHTIVQ+QEN DSSKAE+ VKK
Sbjct: 622 QHKMMDKASYFWSLISQGGYLYVCGDAKGMARDVHRTLHTIVQQQENADSSKAEATVKKL 681
Query: 548 QMEGRYLRDVW 558
QM+GRYLRDVW
Sbjct: 682 QMDGRYLRDVW 692
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545978|ref|XP_002514049.1| cytochrome P450, putative [Ricinus communis] gi|223547135|gb|EEF48632.1| cytochrome P450, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/550 (82%), Positives = 497/550 (90%), Gaps = 1/550 (0%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 68
+ YGDGEPTDNAARFYKWFTE ++RG WLQQL +G+FGLGNRQYEHFNKI VLDE+L
Sbjct: 144 MVATYGDGEPTDNAARFYKWFTEEHERGVWLQQLTYGIFGLGNRQYEHFNKIAKVLDEQL 203
Query: 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYR 128
+QG RL+P+GLGDDDQCIEDDFTAWREL+WPELD LLRDEDD N STPYTAAIPEYR
Sbjct: 204 NEQGAKRLIPVGLGDDDQCIEDDFTAWRELLWPELDNLLRDEDDVNGASTPYTAAIPEYR 263
Query: 129 VMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT 188
V+IH + TS D S + NGN S DIHHPCRVNVAV++ELHKP+SDRSCIHLEFD+SGT
Sbjct: 264 VVIHDASATSCEDK-SVLENGNTSIDIHHPCRVNVAVQKELHKPESDRSCIHLEFDISGT 322
Query: 189 GITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPC 248
GI YETGDHVGVY EN +E VEEAGKLLGQ L+LLFS+H DNEDG P GSSL PPFPGPC
Sbjct: 323 GIIYETGDHVGVYAENFEENVEEAGKLLGQPLDLLFSIHADNEDGAPLGSSLAPPFPGPC 382
Query: 249 TLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 308
TLRTAL+ YAD+LNPPRKAALIALAAHA+EPSEAERLK+LSSP+GKD+YSQW+V SQRSL
Sbjct: 383 TLRTALSHYADLLNPPRKAALIALAAHASEPSEAERLKYLSSPEGKDEYSQWIVGSQRSL 442
Query: 309 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIH 368
LEVMAEFPSA PP+GVFFAA+AP LQPRYYSISSSPRFA RVHVTCALVYGPTPTGRIH
Sbjct: 443 LEVMAEFPSARPPLGVFFAAIAPRLQPRYYSISSSPRFALSRVHVTCALVYGPTPTGRIH 502
Query: 369 KGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQE 428
KGVCSTWMKNA+PLE + D SWAP+FIR SNFKLP +PS+PIIMVGPGTGLAPFRGFLQE
Sbjct: 503 KGVCSTWMKNAVPLEKSHDSSWAPVFIRTSNFKLPTDPSIPIIMVGPGTGLAPFRGFLQE 562
Query: 429 RMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQ 488
RMALK+DGAQLGPALLFFGCRNRRMDFIYEDELN F E+GVISELI+AFSREG QKEYVQ
Sbjct: 563 RMALKEDGAQLGPALLFFGCRNRRMDFIYEDELNYFVEQGVISELIVAFSREGPQKEYVQ 622
Query: 489 HKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548
HKMMDKAAQ+WSL+S+ GY+YVCGDAKGMARDVHRTLHTIVQEQ N+DSSK ES+VKK Q
Sbjct: 623 HKMMDKAAQIWSLISERGYIYVCGDAKGMARDVHRTLHTIVQEQGNLDSSKTESMVKKLQ 682
Query: 549 MEGRYLRDVW 558
M+GRYLRDVW
Sbjct: 683 MDGRYLRDVW 692
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|476936|pir||A47298 NADPH-ferrihemoprotein reductase (EC 1.6.2.4) - mung bean | Back alignment and taxonomy information |
|---|
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/556 (80%), Positives = 500/556 (89%), Gaps = 2/556 (0%)
Query: 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGI 62
S+ + YGDGEPTDNAARFYKWFTEG D RG WLQ+L +GVFGLGNRQYEHFNKIG
Sbjct: 136 SLVFFMLATYGDGEPTDNAARFYKWFTEGKDERGIWLQKLTYGVFGLGNRQYEHFNKIGK 195
Query: 63 VLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTA 122
V+DEEL +QG RLV +GLGDDDQ IEDDF+AW+E +W ELDQLLRDEDDANTVSTPYTA
Sbjct: 196 VVDEELAEQGAKRLVAVGLGDDDQSIEDDFSAWKESLWSELDQLLRDEDDANTVSTPYTA 255
Query: 123 AIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLE 182
AI EYRV+IH PT S+ DN+S + NGN FDIHHPCRVNVAV++ELHKP+SDRSCIHLE
Sbjct: 256 AILEYRVVIHDPTAASTYDNHSTVANGNTEFDIHHPCRVNVAVQKELHKPESDRSCIHLE 315
Query: 183 FDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 242
FD+SGT ITY+TGDHVGVY ENC+ETVEE GKLLGQ+L+L FSLHTD +DGT G SL P
Sbjct: 316 FDISGTSITYDTGDHVGVYAENCNETVEETGKLLGQNLDLFFSLHTDKDDGTSLGGSLLP 375
Query: 243 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVV 302
PFPGPC+LRTALARYAD+LNPPRKAAL+ALA HA+EPS+ ERLKFLSSPQGKD+YS+WVV
Sbjct: 376 PFPGPCSLRTALARYADLLNPPRKAALLALATHASEPSD-ERLKFLSSPQGKDEYSKWVV 434
Query: 303 ASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPT 362
SQRSL+EVMAEFPSA PP+GVFFAA+AP LQPRYYSISSSPRFAP RVHVTCALVYGPT
Sbjct: 435 GSQRSLVEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRFAPQRVHVTCALVYGPT 494
Query: 363 PTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPF 422
PTGRIHKGVCSTWMKNAIP E + DCS APIFIRPSNFKLP + S+PIIMVGPGTGLAPF
Sbjct: 495 PTGRIHKGVCSTWMKNAIPSEKSQDCSSAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPF 554
Query: 423 RGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482
RGFLQER ALK+DG QLGPALLFFGCRNR+MDFIYEDEL +F E+G +SELI+AFSREG+
Sbjct: 555 RGFLQERYALKEDGVQLGPALLFFGCRNRQMDFIYEDELKSFVEQGSLSELIVAFSREGA 614
Query: 483 QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAES 542
+KEYVQHKMMDKAA LWSL+S+ GYLYVCGDAKGMARDVHRTLH+IVQEQENVDS+KAE+
Sbjct: 615 EKEYVQHKMMDKAAHLWSLISQGGYLYVCGDAKGMARDVHRTLHSIVQEQENVDSTKAEA 674
Query: 543 IVKKFQMEGRYLRDVW 558
IVKK QM+GRYLRDVW
Sbjct: 675 IVKKLQMDGRYLRDVW 690
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Source: Vigna radiata Species: Vigna radiata Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 558 | ||||||
| TAIR|locus:2121894 | 692 | ATR1 "P450 reductase 1" [Arabi | 0.976 | 0.787 | 0.750 | 8.7e-230 | |
| UNIPROTKB|F1P2T2 | 679 | POR "NADPH--cytochrome P450 re | 0.948 | 0.779 | 0.397 | 4.9e-108 | |
| MGI|MGI:97744 | 678 | Por "P450 (cytochrome) oxidore | 0.949 | 0.781 | 0.393 | 1.4e-105 | |
| UNIPROTKB|A5D9D3 | 680 | POR "NADPH--cytochrome P450 re | 0.949 | 0.779 | 0.395 | 1.7e-105 | |
| UNIPROTKB|Q3SYT8 | 678 | POR "NADPH--cytochrome P450 re | 0.949 | 0.781 | 0.395 | 1.7e-105 | |
| FB|FBgn0015623 | 679 | Cpr "Cytochrome P450 reductase | 0.940 | 0.773 | 0.401 | 3.6e-105 | |
| UNIPROTKB|P16435 | 677 | POR "NADPH--cytochrome P450 re | 0.949 | 0.782 | 0.397 | 7.5e-105 | |
| RGD|68335 | 678 | Por "P450 (cytochrome) oxidore | 0.949 | 0.781 | 0.391 | 9.5e-105 | |
| UNIPROTKB|P04175 | 678 | POR "NADPH--cytochrome P450 re | 0.949 | 0.781 | 0.393 | 1.6e-104 | |
| ZFIN|ZDB-GENE-050809-121 | 674 | por "P450 (cytochrome) oxidore | 0.948 | 0.784 | 0.379 | 3.2e-104 |
| TAIR|locus:2121894 ATR1 "P450 reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2217 (785.5 bits), Expect = 8.7e-230, P = 8.7e-230
Identities = 410/546 (75%), Positives = 459/546 (84%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YGDGEPTDNAARFYKWFTE N+R LQQL +GVF LGNRQYEHFNKIGIVLDEELCK+G
Sbjct: 148 YGDGEPTDNAARFYKWFTEENERDIKLQQLAYGVFALGNRQYEHFNKIGIVLDEELCKKG 207
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
RL+ +GLGDDDQ IEDDF AW+E +W ELD+LL+DEDD +V+TPYTA IPEYRV+ H
Sbjct: 208 AKRLIEVGLGDDDQSIEDDFNAWKESLWSELDKLLKDEDD-KSVATPYTAVIPEYRVVTH 266
Query: 133 GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITY 192
P T+ SN+ NGN + DIHHPCRV+VAV++ELH +SDRSCIHLEFD+S TGITY
Sbjct: 267 DPRFTTQKSMESNVANGNTTIDIHHPCRVDVAVQKELHTHESDRSCIHLEFDISRTGITY 326
Query: 193 ETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGPCTLRT 252
ETGDHVGVY EN E VEEAGK H D EDG+P S++ PPFPGPCTL T
Sbjct: 327 ETGDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPLESAVPPPFPGPCTLGT 386
Query: 253 ALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312
LARYAD+LNPPRK TEPSEAE+LK L+SP GKD+YSQW+VASQRSLLEVM
Sbjct: 387 GLARYADLLNPPRKSALVALAAYATEPSEAEKLKHLTSPDGKDEYSQWIVASQRSLLEVM 446
Query: 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVC 372
A FPSA PP+GVFFAA+AP LQPRYYSISSSPR AP RVHVT ALVYGPTPTGRIHKGVC
Sbjct: 447 AAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLAPSRVHVTSALVYGPTPTGRIHKGVC 506
Query: 373 STWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMAL 432
STWMKNA+P E + +CS APIFIR SNFKLP+NPS PI+MVGPGTGLAPFRGFLQERMAL
Sbjct: 507 STWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPSTPIVMVGPGTGLAPFRGFLQERMAL 566
Query: 433 KQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMM 492
K+DG +LG +LLFFGCRNR+MDFIYEDELNNF ++GVISELI+AFSREG+QKEYVQHKMM
Sbjct: 567 KEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKEYVQHKMM 626
Query: 493 DKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGR 552
+KAAQ+W L+ +EGYLYVCGDAKGMARDVHRTLHTIVQEQE V SS+AE+IVKK Q EGR
Sbjct: 627 EKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHTIVQEQEGVSSSEAEAIVKKLQTEGR 686
Query: 553 YLRDVW 558
YLRDVW
Sbjct: 687 YLRDVW 692
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|
| UNIPROTKB|F1P2T2 POR "NADPH--cytochrome P450 reductase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
Identities = 220/554 (39%), Positives = 320/554 (57%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E + L L+F VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 142 YGEGDPTDNAQDFYDWLQEADTD---LSGLRFAVFGLGNKTYEHFNAMGKYVDKRLEELG 198
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +++H
Sbjct: 199 AQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVVH 252
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ +R +HLE D+S
Sbjct: 253 TDVNMNKVYTGEMGRLKSYENQKPPFDAKNPFLAVVTENRKLNE-GGERHLMHLELDISN 311
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G+ + +E+ S+ PFP P
Sbjct: 312 SKIRYESGDHVAVYPANDASLVNQLGEILGTDLDTVMSLNNLDEE-----SNKKHPFPCP 366
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
+ RTAL Y DI NPPR T+ E E+L+ + SS +GK Y WVV ++
Sbjct: 367 TSYRTALTYYLDITNPPRTNVLYELAQYATDTGEQEQLRKMASSSAEGKALYLSWVVEAR 426
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R++L ++ + PS PPI + P LQ RYYSI+SS + P+ +H+ V T TG
Sbjct: 427 RNILAILQDMPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSIHICAVTVEYETKTG 485
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
R++KGV + W+K+ +P E NG S P+++R S F+LP PS P+IM+GPGTG+APF GF
Sbjct: 486 RLNKGVATNWLKDKVPNE-NGRNSLVPMYVRKSQFRLPFKPSTPVIMIGPGTGIAPFIGF 544
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER LK+ G ++G +L++GCR R D++Y EL F++EGV+++L +AFSR+ ++K
Sbjct: 545 IQERAWLKEQGKEVGETVLYYGCRREREDYLYRQELARFKQEGVLTQLNVAFSRDQAEKV 604
Query: 486 YVQHKMMDKAAQLWSLLSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + +W L++ ++YVCGDA+ MARDV T + IV E N++ S+A V
Sbjct: 605 YVQHLLKKNKEHIWKLVNDGNAHIYVCGDARNMARDVQNTFYEIVSEYGNMNQSQAVDYV 664
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 665 KKLMTKGRYSLDVW 678
|
|
| MGI|MGI:97744 Por "P450 (cytochrome) oxidoreductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 218/554 (39%), Positives = 316/554 (57%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E D L +KF VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQE-TDVD--LTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +++H
Sbjct: 197 AQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESSIRQYELVVH 250
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 EDMDTAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G+ + +E+ S+ PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNNLDEE-----SNKKHPFPCP 364
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
T RTAL Y DI NPPR +EPSE E L + SS +GK+ Y WVV ++
Sbjct: 365 TTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+ V +G
Sbjct: 425 RHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
R++KGV ++W++ P NG + P+F+R S F+LP P+ P+IMVGPGTG+APF GF
Sbjct: 484 RVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPGTGVAPFMGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L++ G ++G LL++GCR D++Y +EL F ++G +++L +AFSRE + K
Sbjct: 544 IQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + LW L+ + G ++YVCGDA+ MA+DV T + IV E ++ ++A V
Sbjct: 604 YVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYV 663
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 664 KKLMTKGRYSLDVW 677
|
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| UNIPROTKB|A5D9D3 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 219/554 (39%), Positives = 319/554 (57%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E D L +K+ VF LGN+ YEHFN +G +D+ L + G
Sbjct: 142 YGEGDPTDNAQDFYDWLQE-TDVD--LSGVKYAVFALGNKTYEHFNAMGKYVDKRLEQLG 198
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +M+H
Sbjct: 199 AQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELMVH 252
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 253 TDMDMAKVYTGEMGRLKSYENQKPPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELDISD 311
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G+ + +E+ S+ PFP P
Sbjct: 312 SKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE-----SNKKHPFPCP 366
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
+ RTAL Y DI NPPR +EP+E E+L+ + SS +GK+ Y +WV+ ++
Sbjct: 367 TSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYLRWVLEAR 426
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+ V T TG
Sbjct: 427 RHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYETKTG 485
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
RI+KGV ++W++ P NG + P+++R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 486 RINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGTGVAPFIGF 545
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L+Q G ++G LL++GCR D++Y +EL F ++G +++L +AFSRE QK
Sbjct: 546 IQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAFSREQPQKV 605
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + LW L+ + G ++YVCGDA+ MARDV T + IV EQ ++ ++A V
Sbjct: 606 YVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEHAQAVDYV 665
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 666 KKLMTKGRYSLDVW 679
|
|
| UNIPROTKB|Q3SYT8 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 219/554 (39%), Positives = 319/554 (57%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E D L +K+ VF LGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQE-TDVD--LSGVKYAVFALGNKTYEHFNAMGKYVDKRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +M+H
Sbjct: 197 AQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELMVH 250
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 TDMDMAKVYTGEMGRLKSYENQKPPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G+ + +E+ S+ PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE-----SNKKHPFPCP 364
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
+ RTAL Y DI NPPR +EP+E E+L+ + SS +GK+ Y +WV+ ++
Sbjct: 365 TSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYLRWVLEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+ V T TG
Sbjct: 425 RHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYETKTG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
RI+KGV ++W++ P NG + P+++R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 484 RINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGTGVAPFIGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L+Q G ++G LL++GCR D++Y +EL F ++G +++L +AFSRE QK
Sbjct: 544 IQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAFSREQPQKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + LW L+ + G ++YVCGDA+ MARDV T + IV EQ ++ ++A V
Sbjct: 604 YVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEHAQAVDYV 663
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 664 KKLMTKGRYSLDVW 677
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| FB|FBgn0015623 Cpr "Cytochrome P450 reductase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 223/556 (40%), Positives = 315/556 (56%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY+W T G+ L L + VFGLGN+ YEH+NK+ I +D+ L + G
Sbjct: 144 YGEGDPTDNAMEFYEWITSGDVD---LSGLNYAVFGLGNKTYEHYNKVAIYVDKRLEELG 200
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD IEDDF W++ WP + E V I +YR ++
Sbjct: 201 ANRVFELGLGDDDANIEDDFITWKDRFWPAVCDHFGIEGGGEEV------LIRQYR-LLE 253
Query: 133 GPTV------TSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVS 186
P V T + ++ N FD +P + V RELHK RSC+H+E +
Sbjct: 254 QPDVQPDRIYTGEIARLHSIQNQRPPFDAKNPFLAPIKVNRELHK-GGGRSCMHIELSIE 312
Query: 187 GTGITYETGDHVGVYVENCDETVEEAGKX-XXXXXXXXXXXHTDNEDGTPRGSSLTPPFP 245
G+ + Y+ GDHV ++ N VE+ G+ +TD + SS PFP
Sbjct: 313 GSKMRYDAGDHVAMFPVNDKSLVEKLGQLCNADLDTVFSLINTDTD------SSKKHPFP 366
Query: 246 GPCTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFLSS--PQGKDDYSQWVVA 303
P T RTAL Y +I PR T+ E E L+ ++S P+GK+ Y W+
Sbjct: 367 CPTTYRTALTHYLEITAIPRTHILKELAEYCTDEKEKELLRSMASISPEGKEKYQSWIQD 426
Query: 304 SQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP 363
+ R+++ ++ + S PPI + P LQPRYYSISSS + P VHVT LV TP
Sbjct: 427 ACRNIVHILEDIKSCRPPID-HVCELLPRLQPRYYSISSSAKLHPTDVHVTAVLVEYKTP 485
Query: 364 TGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFR 423
TGRI+KGV +T++KN P +G+ + P+FIR S F+LP P PIIMVGPGTGLAPFR
Sbjct: 486 TGRINKGVATTYLKNKQP-QGSEEVK-VPVFIRKSQFRLPTKPETPIIMVGPGTGLAPFR 543
Query: 424 GFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ 483
GF+QER L+ +G +G ++L+FGCR R D+IYE EL + ++G ++ L AFSR+ +
Sbjct: 544 GFIQERQFLRDEGKTVGESILYFGCRKRSEDYIYESELEEWVKKGTLN-LKAAFSRDQGK 602
Query: 484 KEYVQHKMMDKAAQLWSLLSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAES 542
K YVQH + A +W+++ + +G+ Y+CGDAK MA DV L I+ + N+ + A
Sbjct: 603 KVYVQHLLEQDADLIWNVIGENKGHFYICGDAKNMAVDVRNILVKILSTKGNMSEADAVQ 662
Query: 543 IVKKFQMEGRYLRDVW 558
+KK + + RY DVW
Sbjct: 663 YIKKMEAQKRYSADVW 678
|
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| UNIPROTKB|P16435 POR "NADPH--cytochrome P450 reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 220/553 (39%), Positives = 312/553 (56%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E D L +KF VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQE-TDVD--LSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +++H
Sbjct: 197 AQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVVH 250
Query: 133 GPTVTSSV-----DNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
+ V + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 TDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + GK + +E+ S+ PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE-----SNKKHPFPCP 364
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
+ RTAL Y DI NPPR +EPSE E L+ + SS +GK+ Y WVV ++
Sbjct: 365 TSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ + PS PPI + P LQ RYYSI+SS + P+ VH+ +V T G
Sbjct: 425 RHILAILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
RI+KGV + W++ P NG + P+F+R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 484 RINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L+Q G ++G LL++GCR D++Y +EL F +G +++L +AFSRE S K
Sbjct: 544 IQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVK 545
YVQH + LW L+ ++YVCGDA+ MARDV T + IV E ++ ++A +K
Sbjct: 604 YVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIK 663
Query: 546 KFQMEGRYLRDVW 558
K +GRY DVW
Sbjct: 664 KLMTKGRYSLDVW 676
|
|
| RGD|68335 Por "P450 (cytochrome) oxidoreductase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 217/554 (39%), Positives = 315/554 (56%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E D L +KF VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQE-TDVD--LTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +++H
Sbjct: 197 AQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESSIRQYELVVH 250
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 EDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G+ + +E+ S+ PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEE-----SNKKHPFPCP 364
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
T RTAL Y DI NPPR +EPSE E L + SS +GK+ Y WVV ++
Sbjct: 365 TTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+ V +G
Sbjct: 425 RHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
R++KGV ++W++ P NG + P+F+R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 484 RVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L++ G ++G LL++GCR D++Y +EL F ++G +++L +AFSRE + K
Sbjct: 544 IQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + LW L+ + G ++YVCGDA+ MA+DV T + IV E ++ ++A V
Sbjct: 604 YVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYV 663
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 664 KKLMTKGRYSLDVW 677
|
|
| UNIPROTKB|P04175 POR "NADPH--cytochrome P450 reductase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 218/554 (39%), Positives = 315/554 (56%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 140 YGEGDPTDNAQDFYDWLQEADVD---LTGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLG 196
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE WP + + E +T ++I +Y +++H
Sbjct: 197 AQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVVH 250
Query: 133 -----GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + N FD +P V R+L++ ++R +HLE D+S
Sbjct: 251 TDMDTAVVYTGEMGRLKSYENQKPPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELDISD 309
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I YE+GDHV VY N V + G+ + +E+ R PFP P
Sbjct: 310 SKIRYESGDHVAVYPANDSALVNQLGEILGTDLDIVMSLNNLDEESNKRH-----PFPCP 364
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFL--SSPQGKDDYSQWVVASQ 305
T RTAL Y DI NPPR +EPSE E+L+ + SS +GK+ Y WVV ++
Sbjct: 365 TTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEQLRKMASSSGEGKELYLSWVVEAR 424
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R +L ++ ++PS PPI + P LQ RYYSI+SS + P+ VH+ +V T +G
Sbjct: 425 RHILAILQDYPSLRPPIDHLCERL-PRLQARYYSIASSSKVHPNSVHICAVVVEYETKSG 483
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
R++KGV ++W++ P NG + P+F+R S F+LP + P+IMVGPGTG+APF GF
Sbjct: 484 RVNKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGF 543
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER L++ G ++G LL++GCR D++Y +EL F +G ++ L +AFSRE QK
Sbjct: 544 IQERAWLQEQGKEVGETLLYYGCRRSDEDYLYREELAQFHAKGALTRLSVAFSREQPQKV 603
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + LW L+ G ++Y+CGDA+ MARDV T IV EQ ++ ++A V
Sbjct: 604 YVQHLLKRDKEHLWKLIHDGGAHIYICGDARNMARDVQNTFCDIVAEQGPMEHAQAVDYV 663
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY DVW
Sbjct: 664 KKLMTKGRYSLDVW 677
|
|
| ZFIN|ZDB-GENE-050809-121 por "P450 (cytochrome) oxidoreductase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 210/554 (37%), Positives = 312/554 (56%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W +G D L+ + F VFGLGN+ YEH+N +G D+ L + G
Sbjct: 137 YGEGDPTDNAQEFYDWL-QGTDDD--LEGVNFAVFGLGNKTYEHYNAMGKYTDKRLAELG 193
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
G R+ LGLGDDD +E+DF +W+E WP + + E +T ++I ++ +++H
Sbjct: 194 GKRVFDLGLGDDDSNLEEDFISWKEQFWPAVCEYFGVE------ATGEDSSIRQFELVVH 247
Query: 133 GP-----TVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG 187
T + + FD +P +VAV R+L+K +R +H+E D++
Sbjct: 248 NDINMNQVYTGEMGRLKSFQTQKPPFDAKNPFLASVAVNRKLNK-GGNRHLMHIELDITE 306
Query: 188 TGITYETGDHVGVYVENCDETVEEAGKXXXXXXXXXXXXHTDNEDGTPRGSSLTPPFPGP 247
+ I Y++GDHV VY N V G+ +E+ S+ PFP P
Sbjct: 307 SKIRYDSGDHVAVYPTNDSAMVNRIGERLGVDLDAVISLKNLDEE-----SNKKHPFPCP 361
Query: 248 CTLRTALARYADILNPPRKXXXXXXXXXXTEPSEAERLKFLSS--PQGKDDYSQWVVASQ 305
T RTAL Y DI N PR ++P E E ++ ++S P+GK Y WV+ S+
Sbjct: 362 TTYRTALTHYLDINNMPRTNVLYELAQYASDPQEQENMRKMASASPEGKALYQSWVLDSE 421
Query: 306 RSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG 365
R++L ++ + PS PPI + P LQ RYYSI+SS + P +H+ ++ T TG
Sbjct: 422 RNILAILEDLPSLNPPID-HLCELLPRLQARYYSIASSSKVHPHCIHICAVVIEYNTKTG 480
Query: 366 RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 425
R+ KGV + W+K + NG P+++R S F+LP PS P+IM+GPGTG+APF GF
Sbjct: 481 RVFKGVATNWLKGK-HVTDNGHKPTVPMYVRRSQFRLPFKPSNPVIMIGPGTGIAPFMGF 539
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE 485
+QER K+ G +G +L+FGCR+ DF+Y+ EL FE GV+++L +AFSR+ QK
Sbjct: 540 IQERAWRKEQGKDVGETILYFGCRHSNEDFLYQQELEEFERAGVLTQLNVAFSRDQEQKV 599
Query: 486 YVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
YVQH + QLW L+ + ++YVCGDA+ MARDVH I +++ + ++A
Sbjct: 600 YVQHLLKKNKQQLWKLIHTDNAHIYVCGDARNMARDVHAAFSEIAEQEGRLTHTQALDYF 659
Query: 545 KKFQMEGRYLRDVW 558
KK +GRY +DVW
Sbjct: 660 KKLMTKGRYSQDVW 673
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q55CT1 | REDB_DICDI | 1, ., 6, ., -, ., - | 0.3708 | 0.9569 | 0.8005 | yes | no |
| Q5NRM1 | CYSJ_ZYMMO | 1, ., 8, ., 1, ., 2 | 0.3082 | 0.8817 | 0.8118 | yes | no |
| P37116 | NCPR_VIGRR | 1, ., 6, ., 2, ., 4 | 0.8075 | 0.9928 | 0.8028 | N/A | no |
| Q05001 | NCPR_CATRO | 1, ., 6, ., 2, ., 4 | 0.7111 | 0.9820 | 0.7675 | N/A | no |
| Q9SB48 | NCPR1_ARATH | 1, ., 6, ., 2, ., 4 | 0.7783 | 0.9767 | 0.7875 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ATR1 | nadph-cytochrome P450 oxydoreductase (692 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.IX.3567.1 | sulfite reductase (EC-1.8.7.1) (576 aa) | • | • | • | • | • | 0.527 | ||||
| gw1.I.1513.1 | sulfite reductase (EC-1.8.7.1) (634 aa) | • | • | • | 0.474 | ||||||
| fgenesh4_pg.C_scaffold_2810000001 | Predicted protein (369 aa) | • | • | 0.452 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 558 | |||
| cd06204 | 416 | cd06204, CYPOR, NADPH cytochrome p450 reductase (C | 0.0 | |
| COG0369 | 587 | COG0369, CysJ, Sulfite reductase, alpha subunit (f | 1e-131 | |
| cd06207 | 382 | cd06207, CyPoR_like, NADPH cytochrome p450 reducta | 1e-122 | |
| cd06199 | 360 | cd06199, SiR, Cytochrome p450- like alpha subunits | 1e-114 | |
| pfam00667 | 217 | pfam00667, FAD_binding_1, FAD binding domain | 1e-104 | |
| cd06202 | 406 | cd06202, Nitric_oxide_synthase, The ferredoxin-red | 1e-104 | |
| cd06203 | 398 | cd06203, methionine_synthase_red, Human methionine | 1e-101 | |
| cd06206 | 384 | cd06206, bifunctional_CYPOR, These bifunctional pr | 7e-94 | |
| PRK06214 | 530 | PRK06214, PRK06214, sulfite reductase; Provisional | 4e-91 | |
| TIGR01931 | 597 | TIGR01931, cysJ, sulfite reductase [NADPH] flavopr | 7e-90 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 3e-89 | |
| PRK10953 | 600 | PRK10953, cysJ, sulfite reductase subunit alpha; P | 1e-68 | |
| cd06200 | 245 | cd06200, SiR_like1, Cytochrome p450- like alpha su | 7e-34 | |
| cd00322 | 223 | cd00322, FNR_like, Ferredoxin reductase (FNR), an | 4e-32 | |
| cd06208 | 286 | cd06208, CYPOR_like_FNR, These ferredoxin reductas | 5e-29 | |
| cd06201 | 289 | cd06201, SiR_like2, Cytochrome p450- like alpha su | 3e-27 | |
| pfam00258 | 142 | pfam00258, Flavodoxin_1, Flavodoxin | 1e-19 | |
| pfam00175 | 106 | pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi | 4e-19 | |
| PLN03115 | 367 | PLN03115, PLN03115, ferredoxin--NADP(+) reductase; | 8e-18 | |
| PLN03116 | 307 | PLN03116, PLN03116, ferredoxin--NADP+ reductase; P | 3e-16 | |
| TIGR03224 | 411 | TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc | 1e-13 | |
| cd06211 | 238 | cd06211, phenol_2-monooxygenase_like, Phenol 2-mon | 1e-06 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 2e-06 | |
| COG0543 | 252 | COG0543, UbiB, 2-polyprenylphenol hydroxylase and | 2e-06 | |
| cd06217 | 235 | cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi | 2e-05 | |
| cd06216 | 243 | cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi | 3e-05 | |
| PRK08105 | 149 | PRK08105, PRK08105, flavodoxin; Provisional | 5e-05 | |
| cd06198 | 216 | cd06198, FNR_like_3, NAD(P) binding domain of ferr | 2e-04 | |
| cd06209 | 228 | cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc | 4e-04 | |
| cd06188 | 283 | cd06188, NADH_quinone_reductase, Na+-translocating | 0.001 | |
| PRK09004 | 146 | PRK09004, PRK09004, FMN-binding protein MioC; Prov | 0.001 | |
| cd06212 | 232 | cd06212, monooxygenase_like, The oxygenase reducta | 0.001 | |
| cd06189 | 224 | cd06189, flavin_oxioreductase, NAD(P)H dependent f | 0.001 | |
| cd06195 | 241 | cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i | 0.002 | |
| cd06187 | 224 | cd06187, O2ase_reductase_like, The oxygenase reduc | 0.002 | |
| COG4097 | 438 | COG4097, COG4097, Predicted ferric reductase [Inor | 0.002 | |
| cd06210 | 236 | cd06210, MMO_FAD_NAD_binding, Methane monooxygenas | 0.002 |
| >gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 608 bits (1571), Expect = 0.0
Identities = 206/423 (48%), Positives = 270/423 (63%), Gaps = 25/423 (5%)
Query: 154 DIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAG 213
D +P VAV REL SDRSC+H+EFD+SG+GI Y+TGDH+ V+ N E VE
Sbjct: 1 DAKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLL 59
Query: 214 KLLG-QSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIAL 272
K+LG + + SL + +E +S PFP P T RTAL Y DI P + L AL
Sbjct: 60 KVLGLDDRDTVISLKSLDEP-----ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAAL 114
Query: 273 AAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSA--TPPIGVFFAAVA 330
A A +P E ERL L+S +GKD+Y++W+V R+LLEV+ +FPSA TPP F +
Sbjct: 115 AQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFPSAKPTPPPFDFLIELL 173
Query: 331 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLE------- 383
P LQPRYYSISSS + P+R+H+T +V PTPTGRI KGV + W+ P
Sbjct: 174 PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233
Query: 384 --------GNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD 435
G S P+F+R SNF+LP PS P+IM+GPGTG+APFRGF+QER ALK+
Sbjct: 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES 293
Query: 436 GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKA 495
G ++GP LLFFGCR+ DFIY+DEL + + G + EL+ AFSRE +K YVQH++ + A
Sbjct: 294 GKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHA 353
Query: 496 AQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLR 555
Q+W L+++ Y+YVCGDAK MARDV +TL I+ EQ + ++AE VKK + GRY
Sbjct: 354 EQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGMTETEAEEYVKKLKTRGRYQE 413
Query: 556 DVW 558
DVW
Sbjct: 414 DVW 416
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 416 |
| >gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 395 bits (1016), Expect = e-131
Identities = 180/547 (32%), Positives = 270/547 (49%), Gaps = 65/547 (11%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
G+GEP DNA F+++ + P L L++ V GLG+ YE F + G D L + G
Sbjct: 105 QGEGEPPDNAVAFHEFL--KGKKAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELG 162
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
RL P D Q E WR+ V LL+ + + A P+
Sbjct: 163 ATRLFPRVEADV-QDFEAAAAPWRDDVLE----LLKSKFPGQEAAPAQVATSPQ--SESP 215
Query: 133 GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITY 192
SV + R+L DSD+ H+E D+ +G+ Y
Sbjct: 216 YSKPAPSV--------------------AILLENRKLTGRDSDKDVRHIELDLPDSGLRY 255
Query: 193 ETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRT 252
E GD +GV+ EN E V+E +LLG E ++ DG L
Sbjct: 256 EPGDALGVWPENDPELVDEFLELLGLDPEEPVTV-----DGETL------------PLVE 298
Query: 253 ALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312
AL + + + P+ LA A + L+ L +D A +R+L++V+
Sbjct: 299 ALKSHFEFTSAPKSLLE-NLAHFAGQEELRRLLEQLDIADLQD------YAKRRTLIDVL 351
Query: 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVC 372
+FP A P + P L+PR YSI+SSP +PD VH+T +V GR GVC
Sbjct: 352 RDFPPAKLPAE-ELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVC 409
Query: 373 STWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMA 431
S ++ + + P+F++P+ NF+LP +P PIIM+GPGTG+APFR F+QER A
Sbjct: 410 SGYLADLLEEGDT-----IPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAA 464
Query: 432 LKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKM 491
+G LFFGCR+ DF+Y++E + ++GV++ L LAFSR+ +K YVQ ++
Sbjct: 465 NGAEGK----NWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRL 520
Query: 492 MDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEG 551
++A +LW L + ++YVCGDAKGMA+DV L I+ ++ + +AE +K+ + EG
Sbjct: 521 REQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEG 580
Query: 552 RYLRDVW 558
RY RDV+
Sbjct: 581 RYQRDVY 587
|
Length = 587 |
| >gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 364 bits (936), Expect = e-122
Identities = 152/393 (38%), Positives = 227/393 (57%), Gaps = 17/393 (4%)
Query: 167 RELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSL 226
+ L D DRS H+EFD+ G+G++YETGD++G+Y EN D V+E LG + + +
Sbjct: 6 KRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRV 65
Query: 227 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLK 286
+ RG PPFP P ++R L ++ DI P K L L+ AT+ E E L
Sbjct: 66 EPNE---QQRGK---PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLY 119
Query: 287 FLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF 346
L+S +G+ +Y ++ + + LEV+ +FPS P + + P ++PRYYSISSSP
Sbjct: 120 KLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTLE-QLLELCPLIKPRYYSISSSPLK 175
Query: 347 APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANP 406
P+ VH+ +LV TP+GR G+CS+++ +FI+ S+FKLP +P
Sbjct: 176 NPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV------GQRVTVFIKKSSFKLPKDP 229
Query: 407 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 466
PIIMVGPGTGLAPFR FLQER AL G ++GP LL+FGCR+ D++Y++EL +E+
Sbjct: 230 KKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEK 289
Query: 467 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTL 525
GV++ L AFSR+ +K YVQ + + + ++ LL G +YVCG M DV
Sbjct: 290 SGVLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAF 349
Query: 526 HTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
I+++ D AE +++ + GRY+ + W
Sbjct: 350 EEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382 |
| >gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 341 bits (878), Expect = e-114
Identities = 146/400 (36%), Positives = 213/400 (53%), Gaps = 45/400 (11%)
Query: 163 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLEL 222
V R L P S++ H+E D+ G+G++YE GD +GVY N V+E LG
Sbjct: 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALG----- 56
Query: 223 LFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEA 282
L D T G +L LR AL ++ +I L ++A +
Sbjct: 57 ---LSGDEPVSTVGGGTLP--------LREALIKHYEITTLLLAL----LESYAADTGAL 101
Query: 283 ERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SATPPIGVFFAAVAPHLQPRYYSI 340
E L + + + L +V+ P A + P LQPR YSI
Sbjct: 102 ELL----ALAALEAVLAF-----AELRDVLDLLPIPPARLTAEELLDLLRP-LQPRLYSI 151
Query: 341 SSSPRFAPDRVHVTCALV-YGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS- 398
+SSP+ PD VH+T A+V Y GR KGV ST++ + + P+F++P+
Sbjct: 152 ASSPKAVPDEVHLTVAVVRYESH--GRERKGVASTFLADRLKEGDT-----VPVFVQPNP 204
Query: 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYE 458
+F+LP +P PIIMVGPGTG+APFR FLQER A GA+ G LFFG R+ DF+Y+
Sbjct: 205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---GAK-GKNWLFFGERHFATDFLYQ 260
Query: 459 DELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMA 518
DEL + ++GV++ L AFSR+ ++K YVQ +M ++ A+LW+ L + + YVCGDAK MA
Sbjct: 261 DELQQWLKDGVLTRLDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMA 320
Query: 519 RDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+DV L I+ + +D +AE+ +K+ + E RY RDV+
Sbjct: 321 KDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. Length = 360 |
| >gnl|CDD|216051 pfam00667, FAD_binding_1, FAD binding domain | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-104
Identities = 110/223 (49%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Query: 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEA 212
FD +P +V V REL P SDRSCIHLE D+SG+G+ Y+TGDH+GVY N +E VEE
Sbjct: 2 FDAKNPFLASVVVNRELTSPGSDRSCIHLELDISGSGLRYQTGDHLGVYPSNDEELVEEL 61
Query: 213 GKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIAL 272
+LLG + + SL +E + PFP P TLR AL Y +I PP K L AL
Sbjct: 62 LELLGLDPDTVVSLEALDER------WVKHPFPPPTTLRQALTYYLEITGPPTKQLLEAL 115
Query: 273 AAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPH 332
A +A++ E +RL+ LSS GK +Y +W + R+LLEV+ EFPSA P F + P
Sbjct: 116 AQYASDEEEKQRLEKLSSDAGKQEYKEWKLNKARTLLEVLEEFPSAQLPAE-FLLELLPR 174
Query: 333 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 375
LQPRYYSISSSP+ P+ VHVT +V T GRI KGV S W
Sbjct: 175 LQPRYYSISSSPKVHPNEVHVTVVVVEYETGEGRIRKGVASNW 217
|
This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase. Length = 217 |
| >gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Score = 320 bits (821), Expect = e-104
Identities = 164/416 (39%), Positives = 223/416 (53%), Gaps = 37/416 (8%)
Query: 163 VAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLLGQS-- 219
V R+ L P S RS I ++ D +G + Y+ GDHVG++ N E V+ L +
Sbjct: 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPP 61
Query: 220 ------LELLFSLHTDNEDGTPRG-SSLTPPF--PGPCTLRTALARYADILNPPRKAALI 270
LE+L E T G P PCTLR AL RY DI PP L
Sbjct: 62 PDQVIKLEVL------EERSTALGIIKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQ 115
Query: 271 ALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVA 330
LA AT+ + ERL+ L +G +Y W ++LEV+ EFPS P + +
Sbjct: 116 LLATLATDEKDKERLEVLG--KGSSEYEDWKWYKNPNILEVLEEFPSLQVPASLLLTQL- 172
Query: 331 PHLQPRYYSISSSPRFAPDRVHVTCALV-YGPT-PTGRIHKGVCSTWMKNAIPLEGNGDC 388
P LQPRYYSISSSP P +H+T A+V Y G +H GVCSTW+ P GD
Sbjct: 173 PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP----GDT 228
Query: 389 SWAPIFIR-PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERM----ALKQDGAQLGPAL 443
P F+R +F LP +PSVP+IMVGPGTG+APFR F Q+R + G + G
Sbjct: 229 --VPCFVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMT 286
Query: 444 LFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSRE-GSQKEYVQHKMMDKAAQLWSLL 502
LFFGCRN +D IY++E + +GV++E+ A SRE G K YVQ + ++A ++ L
Sbjct: 287 LFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKPKTYVQDLLKEQAESVYDAL 346
Query: 503 SKE-GYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDV 557
+E G++YVCGD MA DV +T+ I+ E N+ + +AE + K + E RY D+
Sbjct: 347 VREGGHIYVCGDVT-MAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDENRYHEDI 401
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. Length = 406 |
| >gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = e-101
Identities = 148/402 (36%), Positives = 221/402 (54%), Gaps = 19/402 (4%)
Query: 167 RELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLG-QSLELLFS 225
++L + D ++ + L D+S TG Y+ GD +G+ N VE K LG
Sbjct: 6 KKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPC 65
Query: 226 LHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERL 285
+ + + + P TLRT L DI P+K L ALA ++ +E RL
Sbjct: 66 EVKVVPNTKKKNAKVPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRL 125
Query: 286 KFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 345
+ L S QG +DY+ +V SLL+++ FPS PP+ + + P LQPR YSI+SSP
Sbjct: 126 EELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHL-PRLQPRPYSIASSPL 184
Query: 346 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWAPIFIRPSN-FKLP 403
P ++ ++V P G+C++W+ + +G P ++R S+ F+LP
Sbjct: 185 EGPGKLRFIFSVVEFPAK------GLCTSWLESLCLSASSHGVK--VPFYLRSSSRFRLP 236
Query: 404 A-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQ--LGPALLFFGCRNRRMDFIYEDE 460
+ PIIMVGPGTG+APF GFLQ R LK+ + G A LFFGCR+R D+++ DE
Sbjct: 237 PDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDE 296
Query: 461 LNNFEEEGVISELILAFSRE---GSQKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKG 516
L F EEG+++ LI+AFSR+ GS +YVQ K+ ++ +L LL +YVCGDAKG
Sbjct: 297 LEEFLEEGILTRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKG 356
Query: 517 MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
MA+DV T I+ ++ +D +A+ ++ + + E RYL DVW
Sbjct: 357 MAKDVRDTFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW 398
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 398 |
| >gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Score = 291 bits (748), Expect = 7e-94
Identities = 138/404 (34%), Positives = 208/404 (51%), Gaps = 29/404 (7%)
Query: 163 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLEL 222
V REL P S HLE + G+TY GD++ V N E V A + G + +
Sbjct: 2 VVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDT 60
Query: 223 LFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEA 282
+ ++ GS+ P P ++ L+ Y ++ P + L ALA P
Sbjct: 61 VLTIS-------ASGSATGLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTK 113
Query: 283 ERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISS 342
L+ L+ + Y+ V+A + S+L+++ FPS P+ F A + P ++PR YSISS
Sbjct: 114 ALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALPLATFLAMLPP-MRPRQYSISS 168
Query: 343 SPRFAPDRVHVTCALVYGPTPTGRI-HKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN-- 399
SP P +T +++ P +G+ ++GV S+++ + P GD +RPS+
Sbjct: 169 SPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP----GDSIHV--SVRPSHSA 222
Query: 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYED 459
F+ P++PS P+IM+ GTGLAPFRGFLQER AL G +L PALLFFGCR+ D +Y D
Sbjct: 223 FRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRD 282
Query: 460 ELNNFEEEGVISELILAFSRE-GSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMA 518
EL +E GV+ + A+SR G YVQ ++ + ++W L + +YVCGD + MA
Sbjct: 283 ELEEWEAAGVV-SVRRAYSRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDGR-MA 340
Query: 519 RDVHRTLHTIVQEQ-ENVDSSKAESIVKKFQM---EGRYLRDVW 558
V L I E+ E S E + + +GRY DV+
Sbjct: 341 PGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384 |
| >gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 4e-91
Identities = 160/463 (34%), Positives = 218/463 (47%), Gaps = 67/463 (14%)
Query: 103 LDQLLRDEDDANTVSTPYT-AAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRV 161
L +L + A + P AA GP TS DN P
Sbjct: 128 LKKLAEEFGAAPAAAAPAAAAADAAPAAAALGPLGTSR-DN---------------PVEA 171
Query: 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLE 221
RR L+KP S++ H+E D++G+G+ YE GD +G++ N V+ LG
Sbjct: 172 TFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAP-- 229
Query: 222 LLFSLHTDNEDGTPRGSSLTPPFP-GPCTLRTALARYADILNPPRKAALIALAAHATEPS 280
P FP G TLR AL + P L L ++ T
Sbjct: 230 --------------------PEFPIGGKTLREALLEDVSLGPAP--DGLFELLSYIT--G 265
Query: 281 EAERLKFLSSPQGKD---DYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRY 337
A R K + G+D D + V L + +FP P F A+ P LQPR
Sbjct: 266 GAARKKARALAAGEDPDGDAATLDV------LAALEKFPGIRPDPEAFVEALDP-LQPRL 318
Query: 338 YSISSSPRFAPDRVHVTCALV-YGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 396
YSISSSP+ P RV +T V Y R+ GV ST++ + G + ++++
Sbjct: 319 YSISSSPKATPGRVSLTVDAVRY--EIGSRLRLGVASTFLGERLA-PG----TRVRVYVQ 371
Query: 397 PS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDF 455
+ F LPA+P+ PIIMVGPGTG+APFR FL ER A K G LFFG + DF
Sbjct: 372 KAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAPGR----NWLFFGHQRSATDF 427
Query: 456 IYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK 515
YEDELN + GV++ L LA+SR+G +K YVQ +M + A+LW L + + YVCGDAK
Sbjct: 428 FYEDELNGLKAAGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAK 487
Query: 516 GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
MA+DV R L IV + +A + V + + GRY DV+
Sbjct: 488 RMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY 530
|
Length = 530 |
| >gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 7e-90
Identities = 175/549 (31%), Positives = 273/549 (49%), Gaps = 72/549 (13%)
Query: 14 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 73
G+GEP + A F+K F + P L+ L++ V GLG+ YE F + G D+ L + GG
Sbjct: 117 GEGEPPEEAISFHK-FLHSK-KAPKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGG 174
Query: 74 ARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHG 133
RL+P D D + + WR V L++ + A+T S T A R
Sbjct: 175 KRLLPRVDADLD--YDANAAEWRAGVLTALNEQAKG--SASTPSLSETPA----RSQTAT 226
Query: 134 PTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYE 193
YS +P R V +++ +S + H+E D+ G+G+ YE
Sbjct: 227 S-------VYSK----------QNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYE 269
Query: 194 TGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTA 253
GD +GV+ +N V+E KLL + E T G ++ L A
Sbjct: 270 PGDALGVWYKNDPALVKEILKLLNLDPD---------EKVTIGGKTIP--------LFEA 312
Query: 254 LARYADI--LNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311
L + ++ P L A+A E ++ + Y Q L+++
Sbjct: 313 LITHFELTQNTKP------LLEAYAELTGNKELKALIADNEKLKAYIQ-----NTPLIDL 361
Query: 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALV-YGPTPTGRIHKG 370
+ ++P+ + + P L PR YSISSS D VH+T +V Y GR G
Sbjct: 362 IRDYPADLDAEQ-LISLLRP-LTPRLYSISSSQSEVGDEVHLTVGVVRY--QAHGRARLG 417
Query: 371 VCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFLQER 429
S ++ + GD P++I P NF+LP +P PIIM+GPGTG+APFR F+QER
Sbjct: 418 GASGFLAERL---KEGDT--VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQER 472
Query: 430 MALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQH 489
DGA+ G LFFG + DF+Y+ E N+ ++GV++++ LAFSR+ ++K YVQH
Sbjct: 473 AE---DGAK-GKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQH 528
Query: 490 KMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQM 549
++ ++ A+LW L + ++YVCGDAK MA+DVH+ L I+ ++ ++D+ +AE + ++
Sbjct: 529 RIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRV 588
Query: 550 EGRYLRDVW 558
E RY RDV+
Sbjct: 589 EKRYQRDVY 597
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 3e-89
Identities = 114/235 (48%), Positives = 151/235 (64%), Gaps = 10/235 (4%)
Query: 328 AVAPH--LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGN 385
V P LQPRYYSI+SSP P VH+ +V P GRI KGVCS ++ + L
Sbjct: 39 GVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFL-AGLQLGAK 97
Query: 386 GDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALL 444
+FIRP+ +F+LP +P+ PIIMVGPGTG+APFRGFLQER AL+ +G GPA L
Sbjct: 98 -----VTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWL 152
Query: 445 FFGCRNRRMDFIYEDELNNFEEEGVISELILAFSRE-GSQKEYVQHKMMDKAAQLWSLLS 503
FFGCRN D++Y +EL ++G ++ L +AFSRE K YVQ K+ + A +L LL+
Sbjct: 153 FFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLN 212
Query: 504 KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+ ++YVCGDAK MA+DV L I+ + VD S AE +K+ + EGRY+ DVW
Sbjct: 213 EGAHIYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 1e-68
Identities = 163/547 (29%), Positives = 261/547 (47%), Gaps = 68/547 (12%)
Query: 14 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 73
G+GEP + A +K+ + + P L+ F VFGLG+ YE F + G D +L + G
Sbjct: 120 GEGEPPEEAVALHKFLF--SKKAPKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGA 177
Query: 74 ARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHG 133
RL L D D + + WR V L A V+ P +
Sbjct: 178 ERL--LDRVDADVEYQAAASEWRARVVDALKS------RAPAVAAPSQSV---------- 219
Query: 134 PTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYE 193
T +V+ P + P +++V +++ +S++ H+E D+ +G+ Y+
Sbjct: 220 --ATGAVNEIHTSP-----YSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQ 272
Query: 194 TGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTA 253
GD +GV+ +N V+E +ELL+ +E T G +L L A
Sbjct: 273 PGDALGVWYQNDPALVKEL-------VELLWL--KGDEPVTVDGKTLP--------LAEA 315
Query: 254 LARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 313
L + ++ A I + +AT L + Y+ + + M
Sbjct: 316 LQWHFELTV---NTANI-VENYATLTRSETLLPLVGDKAALQHYAA------TTPIVDMV 365
Query: 314 EFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALV-YGPTPTGRIHKGVC 372
F A + P L PR YSI+SS + VH+T +V Y GR G
Sbjct: 366 RFAPAQLDAEQLIGLLRP-LTPRLYSIASSQAEVENEVHITVGVVRY--DIEGRARAGGA 422
Query: 373 STWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMA 431
S+++ A LE G+ +FI + NF+LPANP P+IM+GPGTG+APFR F+Q+R A
Sbjct: 423 SSFL--ADRLEEEGEVR---VFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAA 477
Query: 432 LKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKM 491
DGA G LFFG + DF+Y+ E + +EG+++ + LA+SR+ +K YVQ K+
Sbjct: 478 ---DGAP-GKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKL 533
Query: 492 MDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEG 551
++ A+LW ++ ++YVCGDA MA+DV + L ++ E +D+ A+ + + ++E
Sbjct: 534 REQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVER 593
Query: 552 RYLRDVW 558
RY RDV+
Sbjct: 594 RYQRDVY 600
|
Length = 600 |
| >gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 7e-34
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 34/237 (14%)
Query: 327 AAVAPH--LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEG 384
A + P L R YSI+S P A + + V G + G+ S W+ P+
Sbjct: 38 AEIGPRHPLPHREYSIASLP--ADGALELLVRQV--RHADGGL--GLGSGWLTRHAPI-- 89
Query: 385 NGDCSWAPIFIRP---SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGP 441
A + +R F LP P+I++G GTGLA R L+ R +
Sbjct: 90 -----GASVALRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAGRHRN---- 139
Query: 442 ALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSL 501
L FG R DF +EL ++ G ++ L LAFSR+ +QK YVQ ++ A +L +
Sbjct: 140 -WLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFSRDQAQKRYVQDRLRAAADELRAW 198
Query: 502 LSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+++ +YVCG +GMA V L I+ E+ V+ GRY RDV+
Sbjct: 199 VAEGAAIYVCGSLQGMAPGVDAVLDEILGEEA----------VEALLAAGRYRRDVY 245
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 245 |
| >gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-32
Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 23/212 (10%)
Query: 325 FFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEG 384
R YSI+SSP + +T + G S W+ + P
Sbjct: 31 LHLPGDGRGLRRAYSIASSPD-EEGELELT---------VKIVPGGPFSAWLHDLKP--- 77
Query: 385 NGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALL 444
GD + +F LP S P++++ G G+ PFR L+ A K G L
Sbjct: 78 -GD--EVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG----GEITL 130
Query: 445 FFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLW-SLLS 503
+G R D ++ DEL +EG L+LA SRE K ++ +A L
Sbjct: 131 LYGARTPA-DLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDD 189
Query: 504 KEGYLYVCGDAKGMARDVHRTLHTIVQEQENV 535
+Y+CG MA+ V L ++ +E +
Sbjct: 190 SGALVYICGPP-AMAKAVREALVSLGVPEERI 220
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223 |
| >gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-29
Identities = 74/240 (30%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 330 APHLQPRYYSISSSPRFAPDRVHVTCAL-----VYGPTPTGRIHKGVCSTWMKNAIPLEG 384
PH R YSI+SS R+ D T +L VY T KGVCS ++ + P
Sbjct: 60 KPHK-LRLYSIASS-RYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--- 114
Query: 385 NGDCSWAPIFIR-PSN--FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGP 441
GD + I P LP +P+ +IM+ GTG+APFR FL+ K +
Sbjct: 115 -GD----DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTG 169
Query: 442 -ALLFFGCRNRRMDFIYEDELNNFEE--EGVISELILAFSREGS----QKEYVQHKMMDK 494
A LFFG N +Y+DEL + + + AFSRE K YVQ ++ +
Sbjct: 170 LAWLFFGVPNSD-SLLYDDELEKYPKQYPDNF-RIDYAFSREQKNADGGKMYVQDRIAEY 227
Query: 495 AAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRY 553
A ++W+LL K+ ++Y+CG KGM V L ++ + + + + +GR+
Sbjct: 228 AEEIWNLLDKDNTHVYICG-LKGMEPGVDDALTSVAEGGLAWEEFW-----ESLKKKGRW 281
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286 |
| >gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 40/227 (17%)
Query: 335 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIH-KGVCSTWMKNAIPLEGNGDCSWAPI 393
PR+YS++SS + D C R H G+CS ++ P GD A
Sbjct: 100 PRFYSLASS---SSDGFLEICV---------RKHPGGLCSGYLHGLKP----GDTIKA-- 141
Query: 394 FIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRR 452
FIRP +F+ + P+I++G GTG+AP GF++ A + P L++G R+
Sbjct: 142 FIRPNPSFRPAKGAA-PVILIGAGTGIAPLAGFIRANAARR-------PMHLYWGGRDPA 193
Query: 453 MDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCG 512
DF+YEDEL+ + +G +++L AFSR YVQ ++ A +L L+ + VCG
Sbjct: 194 SDFLYEDELDQYLADGRLTQLHTAFSRTPD-GAYVQDRLRADAERLRRLIEDGAQIMVCG 252
Query: 513 DAKGMARDVHRTLHTI-VQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
++ MA+ V L I + ++D K +GRY DV+
Sbjct: 253 -SRAMAQGVAAVLEEILAPQPLSLDELKL---------QGRYAEDVY 289
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289 |
| >gnl|CDD|215823 pfam00258, Flavodoxin_1, Flavodoxin | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-19
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 13 YGDGEPTDNAARFYKWFTEGND--RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCK 70
YGDGEP DNA F W G L L++ VFGLG+ YE F LDE+L +
Sbjct: 55 YGDGEPPDNAKPFEDWLLLFGLPLEGGDLSGLRYAVFGLGDSGYEGFCWAAKKLDEKLAE 114
Query: 71 QGGARLVPLGLGDDD---QCIEDDFTAW 95
G R+ PLG GD+D +E+ F AW
Sbjct: 115 LGAKRVGPLGEGDEDTQEDDLEEAFEAW 142
|
Length = 142 |
| >gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 4e-19
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 412 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 471
M+ GTG+AP L+ + +DG L +G R D + +EL ++ +
Sbjct: 1 MIAGGTGIAPLYSVLKALLE-DEDG---TEVYLVYGNRTED-DLLLREELEELAKK-YPN 54
Query: 472 ELILAFSREGSQKE----YVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHR 523
++A SR YV ++++ S + +YVCG M + V +
Sbjct: 55 LKVVAVSRTDDGWYGRKGYVTDALLEEHL---SEDLGDTDVYVCG-PPPMMKAVRK 106
|
Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106 |
| >gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 8e-18
Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 20/202 (9%)
Query: 331 PHLQPRYYSISSSP--RFAPDRVHVTCA--LVYGPTPTGRIHKGVCSTWMKNAIPLEGNG 386
PH + R YSI+SS F + C LVY G I KGVCS ++ + P G
Sbjct: 142 PH-KLRLYSIASSALGDFGDSKTVSLCVKRLVY-TNDQGEIVKGVCSNFLCDLKP--GAE 197
Query: 387 DCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQL-GPALLF 445
P+ +P +P+ IIM+ GTG+APFR FL + K D + G A LF
Sbjct: 198 VKITGPV---GKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLF 254
Query: 446 FGCRNRRMDFIYEDELNNFEEEGVIS-ELILAFSREGS----QKEYVQHKMMDKAAQLWS 500
G +Y++E +E+ + L A SRE + +K Y+Q +M + A +LW
Sbjct: 255 LGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWE 313
Query: 501 LLSKEG-YLYVCGDAKGMARDV 521
LL K+ Y+Y+CG KGM + +
Sbjct: 314 LLKKDNTYVYMCG-LKGMEKGI 334
|
Length = 367 |
| >gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 78/238 (32%), Positives = 114/238 (47%), Gaps = 32/238 (13%)
Query: 330 APHLQPRYYSISSSPRFAPDRVHVTCAL-----VYGPTPTGR---IHKGVCSTWMKNAIP 381
APH R YSI+S+ R+ D T +L VY TG+ KGVCS ++ +A P
Sbjct: 77 APH-NVRLYSIAST-RYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP 134
Query: 382 LEGNGDCSWAPIFIRPSNFK---LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA 437
GD + I + K LP +P+ IMV GTG+APFRGFL+ RM ++ A
Sbjct: 135 ----GD----KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLR-RMFMEDVPA 185
Query: 438 QL--GPALLFFGCRNRRMDFIYEDELNNFEEEGVIS-ELILAFSREGSQKE----YVQHK 490
G A LF G N +Y+DE + ++ + A SRE K+ YVQ K
Sbjct: 186 FKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDK 244
Query: 491 MMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548
+ + + +++ LL ++Y CG KGM + TL + +E+ K + K Q
Sbjct: 245 IEEYSDEIFKLLDNGAHIYFCG-LKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQ 301
|
Length = 307 |
| >gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 457
S F +P +P I+M+ GTG AP R + ER ++D + G +LFFG R + + Y
Sbjct: 258 STFLMPNHPESSIMMICTGTGSAPMRA-MTERRRRRRDHGEGGKLMLFFGARTKE-ELPY 315
Query: 458 EDELNNFEEEGVISELILAFSRE-GSQKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAK 515
L ++ + ++ AFSR K YVQ + ++AA + +LL Y+Y+CG K
Sbjct: 316 FGPLQKLPKDFI--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICG-LK 372
Query: 516 GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRY 553
GM V + + E++ + + EGR
Sbjct: 373 GMEEGVLDAFRDVCAT----NGLSWETLEPRLRAEGRL 406
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411 |
| >gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 329 VAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 388
+ R +SI+SSP A + + LV G T +HK +K LE +G
Sbjct: 46 APGYEGTRAFSIASSPSDA-GEIELHIRLVPGGIATTYVHK-----QLKEGDELEISG-- 97
Query: 389 SWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGC 448
+ F+R S+ PII + G+GL+ R + + L + G LFFG
Sbjct: 98 PYGDFFVRDSD-------QRPIIFIAGGSGLSSPRSMILD---LLERGDTR-KITLFFGA 146
Query: 449 RNRRMDFIYEDELNNFEEE 467
R R + Y DE E++
Sbjct: 147 RTRA-ELYYLDEFEALEKD 164
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 162 NVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 204
+ V R+L PDS RS HLEFD+SG + + Y+ GDH+GV N
Sbjct: 1 AITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 38/218 (17%)
Query: 308 LLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRI 367
LL + F + T G F P R YS++S+P D+ + +
Sbjct: 24 LLRLRLPFVALTFKPGQFVMLRVPGGVRRPYSLASAPD---DKGELELHIRVYE------ 74
Query: 368 HKGVCSTWMKNAIPLEGNGDCSWAPIFIR-P-SNFKLPANPSVPIIMVGPGTGLAPFRGF 425
G + ++ GD I +R P N L P++++ GTG+AP
Sbjct: 75 -VGKVTKYIFG----LKEGD----KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAI 125
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-- 483
+E LK+ G L +G R + D + DEL EE E+ + +G +
Sbjct: 126 AKE---LKEKGDA-NKVTLLYGARTAK-DLLLLDEL----EELAEKEVHP-VTDDGWKGR 175
Query: 484 KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDV 521
K +V ++ + L + +Y+CG M + V
Sbjct: 176 KGFVTTDVLKEL-----LDLEVDDVYICG-PPAMVKAV 207
|
Length = 252 |
| >gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395
R YSI+SSP RV +T R+ G S ++ + + + GD + +
Sbjct: 51 RSYSIASSPT-QRGRVELTVK---------RVPGGEVSPYLHDEVKV---GD----LLEV 93
Query: 396 R-PSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRM 453
R P F P++++ G+G+ P ++ R L P L + R
Sbjct: 94 RGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP----VPFRLLYSARTAE- 148
Query: 454 DFIYEDELNNFEEE 467
D I+ DEL
Sbjct: 149 DVIFRDELEQLARR 162
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235 |
| >gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 23/128 (17%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395
R YS+SSSP + +T P G + S W+ N + GD + +
Sbjct: 65 RSYSLSSSPTQEDGTITLTVK----AQPDGLV-----SNWLVNHLAP---GDV----VEL 108
Query: 396 RPS--NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRM 453
+F LP ++++ G+G+ P L+ + + A + LL++
Sbjct: 109 SQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRT-LLARGPTADV--VLLYYARTRE-- 163
Query: 454 DFIYEDEL 461
D I+ DEL
Sbjct: 164 DVIFADEL 171
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243 |
| >gnl|CDD|181230 PRK08105, PRK08105, flavodoxin; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 28 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 79
F D + L++GV LG+ Y++F G D L +QG R+
Sbjct: 71 LFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGER 122
|
Length = 149 |
| >gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 15/119 (12%)
Query: 409 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE- 467
I + G G+ PF L+ P LF+ R+ D ++ DEL
Sbjct: 97 RQIWIAGGIGITPFLALLEAL----AARGDARPVTLFYCVRDPE-DAVFLDELRALAAAA 151
Query: 468 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLH 526
GV+ +I + S E + ++ A ++ CG GMA + + L
Sbjct: 152 GVVLHVIDSPSDGRLTLEQLVRALVPDLADAD--------VWFCG-PPGMADALEKGLR 201
|
The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216 |
| >gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 409 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 466
P++M+ GTGLAPF L L +DG+ P L +G R D + D L E
Sbjct: 104 PLLMLAGGTGLAPFLSMLD---VLAEDGSAH-PVHLVYGV-TRDADLVELDRLEALAE 156
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228 |
| >gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 37/210 (17%), Positives = 77/210 (36%), Gaps = 28/210 (13%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI-F 394
R YS+++ P + + + P I G+ S+++ N P GD +
Sbjct: 87 RAYSLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP----GD----KVTA 137
Query: 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMD 454
P + ++ +G G G+AP R + + + ++G R+ + +
Sbjct: 138 SGPFGEFFIKDTDREMVFIGGGAGMAPLRSHIFHLLKTLKSKR---KISFWYGARSLK-E 193
Query: 455 FIYEDELNNFEEEGVISELILAFSREGSQKE--------YVQHKMMDKAAQLWSLLSKEG 506
Y++E E+E + S Q E ++ +++ + + E
Sbjct: 194 LFYQEEFEALEKEFPNFKYHPVLSE--PQPEDNWDGYTGFIHQVLLENYLKK--HPAPED 249
Query: 507 Y-LYVCGDAKGMARDVHRTLHTIVQEQENV 535
Y+CG M V + L + +EN+
Sbjct: 250 IEFYLCGPPP-MNSAVIKMLDDLGVPRENI 278
|
(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283 |
| >gnl|CDD|181608 PRK09004, PRK09004, FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIG 61
++L +T +G G+ DN F++ E P L Q++F G+G+ +Y+ F
Sbjct: 46 ASGLWLIVTSTHGAGDLPDNLQPFFEELQEQK---PDLSQVRFAAIGIGSSEYDTFCGAI 102
Query: 62 IVLDEELCKQGGARLVP 78
L++ L +G ++
Sbjct: 103 DKLEQLLKAKGAKQIGE 119
|
Length = 146 |
| >gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYED 459
L + PI+++G G+G+AP L++ A D P F+G R R D Y +
Sbjct: 96 CTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD----RPVRFFYGARTAR-DLFYLE 150
Query: 460 ELNNFEEE 467
E+ E+
Sbjct: 151 EIAALGEK 158
|
These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232 |
| >gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 58/210 (27%)
Query: 334 QPRYYSISSSPRFAPDRV--HVTCALVYGPTPTGRIHKGVCSTWM------KNAIPLEG- 384
R +SI+S+P + H+ + G S ++ + +EG
Sbjct: 40 DKRPFSIASAPH-EDGEIELHI-----------RAVPGGSFSDYVFEELKENGLVRIEGP 87
Query: 385 NGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALL 444
GD F+R + P+I++ GTG AP + L+ +A P L
Sbjct: 88 LGDF-----FLRE-------DSDRPLILIAGGTGFAPIKSILEHLLAQGSK----RPIHL 131
Query: 445 FFGCRNRRMDFIYEDELNNFEEEG-------VISEL-ILAFSREGSQKEYVQHKMMDKAA 496
++G R D ++ L + E V+SE R G V +++
Sbjct: 132 YWGARTEE-DLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGRTG----LVHEAVLEDFP 186
Query: 497 QLWSLLSKEGY-LYVCGDAKGMARDVHRTL 525
L + +Y CG + M
Sbjct: 187 DL------SDFDVYACGSPE-MVYAARDDF 209
|
Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224 |
| >gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 410 IIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV 469
+ ++ GTG+APF L++ + + +L G R + Y+DE+ ++
Sbjct: 104 LWLLATGTGIAPFLSMLRDLEIWE----RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYN 158
Query: 470 IS-ELILAFSREGSQK-------EYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDV 521
+ SRE + ++ +++ A L L + ++ +CG+ M D
Sbjct: 159 GKFRYVPIVSREKENGALTGRIPDLIESGELEEHAGL-PLDPETSHVMLCGN-PQMIDDT 216
Query: 522 HRTL 525
L
Sbjct: 217 QELL 220
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241 |
| >gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 46/149 (30%)
Query: 332 HLQPRYYSISSSP----------RFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP 381
R YS ++ P R P V+ AL + G + + P
Sbjct: 38 PRTWRAYSPANPPNEDGEIEFHVRAVPGGR-VSNALH------DELKVG--DRV-RLSGP 87
Query: 382 LEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLG- 440
G ++R + P++ + GTGLAP R A+ +D + G
Sbjct: 88 Y---GTF-----YLRRDH-------DRPVLCIAGGTGLAPLR-------AIVEDALRRGE 125
Query: 441 --PALLFFGCRNRRMDFIYEDELNNFEEE 467
P LFFG R R D + L
Sbjct: 126 PRPVHLFFGARTER-DLYDLEGLLALAAR 153
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224 |
| >gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 411 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI 470
+ + G G+ PF L K D P LF+ RN + +Y +EL ++
Sbjct: 319 VWIAGGIGITPFISMLFTLAERKSD----PPVHLFYCSRNWE-EALYAEELRALAQKLPN 373
Query: 471 SELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLH 526
L + S S+ Y+ + +++ + ++ CG M + R L
Sbjct: 374 VVLHIIDS---SKDGYLDQEDLERYPD----RPRTRSVFFCG-PIKMMDSLRRDLK 421
|
Length = 438 |
| >gnl|CDD|99806 cd06210, MMO_FAD_NAD_binding, Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYED 459
F L N P V GTGLAP L+ RMA + A LFFG N + Y D
Sbjct: 101 FGLRENGLRPRWFVAGGTGLAPLLSMLR-RMAEWGE---PQEARLFFGV-NTEAELFYLD 155
Query: 460 ELNNFEEE 467
EL +
Sbjct: 156 ELKRLADS 163
|
This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. Length = 236 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 558 | |||
| KOG1159 | 574 | consensus NADP-dependent flavoprotein reductase [E | 100.0 | |
| PRK10953 | 600 | cysJ sulfite reductase subunit alpha; Provisional | 100.0 | |
| TIGR01931 | 597 | cysJ sulfite reductase [NADPH] flavoprotein, alpha | 100.0 | |
| KOG1158 | 645 | consensus NADP/FAD dependent oxidoreductase [Energ | 100.0 | |
| COG0369 | 587 | CysJ Sulfite reductase, alpha subunit (flavoprotei | 100.0 | |
| cd06204 | 416 | CYPOR NADPH cytochrome p450 reductase (CYPOR) serv | 100.0 | |
| cd06207 | 382 | CyPoR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| cd06203 | 398 | methionine_synthase_red Human methionine synthase | 100.0 | |
| cd06202 | 406 | Nitric_oxide_synthase The ferredoxin-reductase (FN | 100.0 | |
| cd06206 | 384 | bifunctional_CYPOR These bifunctional proteins fus | 100.0 | |
| cd06199 | 360 | SiR Cytochrome p450- like alpha subunits of E. col | 100.0 | |
| PRK06214 | 530 | sulfite reductase; Provisional | 100.0 | |
| PF00667 | 219 | FAD_binding_1: FAD binding domain; InterPro: IPR00 | 100.0 | |
| PLN03115 | 367 | ferredoxin--NADP(+) reductase; Provisional | 100.0 | |
| cd06182 | 267 | CYPOR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| TIGR03224 | 411 | benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p | 100.0 | |
| PLN03116 | 307 | ferredoxin--NADP+ reductase; Provisional | 100.0 | |
| cd06208 | 286 | CYPOR_like_FNR These ferredoxin reductases are rel | 100.0 | |
| cd06201 | 289 | SiR_like2 Cytochrome p450- like alpha subunits of | 100.0 | |
| cd06200 | 245 | SiR_like1 Cytochrome p450- like alpha subunits of | 100.0 | |
| cd06188 | 283 | NADH_quinone_reductase Na+-translocating NADH:quin | 99.95 | |
| cd06189 | 224 | flavin_oxioreductase NAD(P)H dependent flavin oxid | 99.95 | |
| cd00322 | 223 | FNR_like Ferredoxin reductase (FNR), an FAD and NA | 99.95 | |
| PRK08051 | 232 | fre FMN reductase; Validated | 99.95 | |
| cd06211 | 238 | phenol_2-monooxygenase_like Phenol 2-monooxygenase | 99.95 | |
| PRK07609 | 339 | CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat | 99.95 | |
| PRK10926 | 248 | ferredoxin-NADP reductase; Provisional | 99.95 | |
| cd06195 | 241 | FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c | 99.95 | |
| cd06210 | 236 | MMO_FAD_NAD_binding Methane monooxygenase (MMO) re | 99.94 | |
| cd06190 | 232 | T4MO_e_transfer_like Toluene-4-monoxygenase electr | 99.94 | |
| PRK11872 | 340 | antC anthranilate dioxygenase reductase; Provision | 99.94 | |
| cd06187 | 224 | O2ase_reductase_like The oxygenase reductase FAD/N | 99.94 | |
| PRK05464 | 409 | Na(+)-translocating NADH-quinone reductase subunit | 99.94 | |
| PRK10684 | 332 | HCP oxidoreductase, NADH-dependent; Provisional | 99.94 | |
| PRK08345 | 289 | cytochrome-c3 hydrogenase subunit gamma; Provision | 99.94 | |
| cd06209 | 228 | BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD | 99.94 | |
| cd06212 | 232 | monooxygenase_like The oxygenase reductase FAD/NAD | 99.94 | |
| TIGR01941 | 405 | nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo | 99.94 | |
| cd06191 | 231 | FNR_iron_sulfur_binding Iron-sulfur binding Ferred | 99.94 | |
| PRK13289 | 399 | bifunctional nitric oxide dioxygenase/dihydropteri | 99.94 | |
| cd06194 | 222 | FNR_N-term_Iron_sulfur_binding Iron-sulfur binding | 99.94 | |
| PRK05713 | 312 | hypothetical protein; Provisional | 99.94 | |
| cd06213 | 227 | oxygenase_e_transfer_subunit The oxygenase reducta | 99.93 | |
| cd06221 | 253 | sulfite_reductase_like Anaerobic sulfite reductase | 99.93 | |
| cd06215 | 231 | FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr | 99.93 | |
| COG1018 | 266 | Hmp Flavodoxin reductases (ferredoxin-NADPH reduct | 99.93 | |
| PRK05723 | 151 | flavodoxin; Provisional | 99.93 | |
| cd06184 | 247 | flavohem_like_fad_nad_binding FAD_NAD(P)H binding | 99.93 | |
| cd06216 | 243 | FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr | 99.93 | |
| cd06196 | 218 | FNR_like_1 Ferredoxin reductase-like proteins cata | 99.92 | |
| TIGR02160 | 352 | PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, | 99.92 | |
| PTZ00274 | 325 | cytochrome b5 reductase; Provisional | 99.92 | |
| cd06198 | 216 | FNR_like_3 NAD(P) binding domain of ferredoxin red | 99.92 | |
| cd06217 | 235 | FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr | 99.92 | |
| PRK09004 | 146 | FMN-binding protein MioC; Provisional | 99.92 | |
| PRK08221 | 263 | anaerobic sulfite reductase subunit B; Provisional | 99.92 | |
| cd06183 | 234 | cyt_b5_reduct_like Cytochrome b5 reductase catalyz | 99.92 | |
| PTZ00319 | 300 | NADH-cytochrome B5 reductase; Provisional | 99.92 | |
| cd06214 | 241 | PA_degradation_oxidoreductase_like NAD(P) binding | 99.91 | |
| PRK08105 | 149 | flavodoxin; Provisional | 99.91 | |
| TIGR02911 | 261 | sulfite_red_B sulfite reductase, subunit B. Member | 99.91 | |
| cd06218 | 246 | DHOD_e_trans FAD/NAD binding domain in the electro | 99.91 | |
| cd06185 | 211 | PDR_like Phthalate dioxygenase reductase (PDR) is | 99.91 | |
| COG0543 | 252 | UbiB 2-polyprenylphenol hydroxylase and related fl | 99.9 | |
| cd06197 | 220 | FNR_like_2 FAD/NAD(P) binding domain of ferredoxin | 99.9 | |
| KOG0534 | 286 | consensus NADH-cytochrome b-5 reductase [Coenzyme | 99.89 | |
| cd06220 | 233 | DHOD_e_trans_like2 FAD/NAD binding domain in the e | 99.89 | |
| PRK06222 | 281 | ferredoxin-NADP(+) reductase subunit alpha; Review | 99.89 | |
| cd06219 | 248 | DHOD_e_trans_like1 FAD/NAD binding domain in the e | 99.89 | |
| PRK00054 | 250 | dihydroorotate dehydrogenase electron transfer sub | 99.89 | |
| cd06192 | 243 | DHOD_e_trans_like FAD/NAD binding domain (electron | 99.89 | |
| COG2871 | 410 | NqrF Na+-transporting NADH:ubiquinone oxidoreducta | 99.88 | |
| COG4097 | 438 | Predicted ferric reductase [Inorganic ion transpor | 99.88 | |
| PRK05802 | 320 | hypothetical protein; Provisional | 99.88 | |
| PLN02252 | 888 | nitrate reductase [NADPH] | 99.87 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 99.85 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.82 | |
| cd06193 | 235 | siderophore_interacting Siderophore interacting pr | 99.81 | |
| cd06186 | 210 | NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz | 99.8 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.79 | |
| PF00175 | 109 | NAD_binding_1: Oxidoreductase NAD-binding domain ; | 99.74 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.74 | |
| PF00258 | 143 | Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This | 99.7 | |
| PLN02844 | 722 | oxidoreductase/ferric-chelate reductase | 99.6 | |
| PRK07308 | 146 | flavodoxin; Validated | 99.6 | |
| PLN02292 | 702 | ferric-chelate reductase | 99.59 | |
| PLN02631 | 699 | ferric-chelate reductase | 99.58 | |
| PRK12359 | 172 | flavodoxin FldB; Provisional | 99.53 | |
| KOG3378 | 385 | consensus Globins and related hemoproteins [Energy | 99.5 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 99.49 | |
| PRK06703 | 151 | flavodoxin; Provisional | 99.48 | |
| TIGR01752 | 167 | flav_long flavodoxin, long chain. Flavodoxins are | 99.3 | |
| PRK09271 | 160 | flavodoxin; Provisional | 99.26 | |
| TIGR01753 | 140 | flav_short flavodoxin, short chain. Flavodoxins ar | 99.24 | |
| COG0716 | 151 | FldA Flavodoxins [Energy production and conversion | 99.24 | |
| PRK06756 | 148 | flavodoxin; Provisional | 99.22 | |
| TIGR01754 | 140 | flav_RNR ribonucleotide reductase-associated flavo | 99.21 | |
| TIGR00333 | 125 | nrdI ribonucleoside-diphosphate reductase 2, opero | 99.09 | |
| PRK09267 | 169 | flavodoxin FldA; Validated | 99.01 | |
| PF08030 | 156 | NAD_binding_6: Ferric reductase NAD binding domain | 98.87 | |
| KOG0039 | 646 | consensus Ferric reductase, NADH/NADPH oxidase and | 98.78 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 98.73 | |
| PRK03600 | 134 | nrdI ribonucleotide reductase stimulatory protein; | 98.64 | |
| PF00970 | 99 | FAD_binding_6: Oxidoreductase FAD-binding domain; | 98.48 | |
| PRK02551 | 154 | flavoprotein NrdI; Provisional | 98.31 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 98.07 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 97.67 | |
| PRK05569 | 141 | flavodoxin; Provisional | 97.39 | |
| PRK05568 | 142 | flavodoxin; Provisional | 97.39 | |
| PF07972 | 122 | Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: | 97.29 | |
| PRK06242 | 150 | flavodoxin; Provisional | 97.09 | |
| COG1780 | 141 | NrdI Protein involved in ribonucleotide reduction | 97.0 | |
| COG2375 | 265 | ViuB Siderophore-interacting protein [Inorganic io | 96.88 | |
| PRK07116 | 160 | flavodoxin; Provisional | 95.2 | |
| TIGR01755 | 197 | flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. | 94.85 | |
| PF08022 | 105 | FAD_binding_8: FAD-binding domain; InterPro: IPR01 | 94.27 | |
| PRK03767 | 200 | NAD(P)H:quinone oxidoreductase; Provisional | 94.21 | |
| KOG0560 | 638 | consensus Sulfite reductase (ferredoxin) [Inorgani | 93.79 | |
| PF08021 | 117 | FAD_binding_9: Siderophore-interacting FAD-binding | 91.44 | |
| TIGR03567 | 171 | FMN_reduc_SsuE FMN reductase, SsuE family. Members | 91.05 | |
| PF03358 | 152 | FMN_red: NADPH-dependent FMN reductase; InterPro: | 90.62 | |
| PRK11104 | 177 | hemG protoporphyrinogen oxidase; Provisional | 90.5 | |
| PRK10569 | 191 | NAD(P)H-dependent FMN reductase; Provisional | 90.11 | |
| PF12682 | 156 | Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A. | 89.32 | |
| TIGR03566 | 174 | FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb | 86.91 | |
| PF12724 | 143 | Flavodoxin_5: Flavodoxin domain | 85.14 |
| >KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-108 Score=833.63 Aligned_cols=524 Identities=31% Similarity=0.546 Sum_probs=457.9
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCccc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 82 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~ 82 (558)
..+|||||||||+|++|+||+.||++|.+.+.++..|++++|||||||||+|++||.++|+|++||.+|||+.++++|+|
T Consensus 48 ~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glg 127 (574)
T KOG1159|consen 48 ERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLG 127 (574)
T ss_pred CceEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccc
Confidence 46899999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCC--CchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCcee
Q 008647 83 DDDQ--CIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCR 160 (558)
Q Consensus 83 d~~~--~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (558)
||++ ++++.|.+|...+|..|....+....... ..|......+|++..+..+... ...+.....+.-..
T Consensus 128 DdQh~~G~eg~~~pW~~~lw~~L~~i~~p~~~~t~-l~~~~~~~~k~~~l~~~~~~~~--------~d~~~v~~~~~~~~ 198 (574)
T KOG1159|consen 128 DDQHEEGIEGVFDPWLKELWSYLKGIYPPYRPETD-LIPTVQITTKYSLLELGKASDF--------SDSDIVLEPQGQIP 198 (574)
T ss_pred cccccccchhhhHHHHHHHHHHHHhhcCCCCCccc-CCCcccccchhhhhhccccccC--------Ccchhhhccccccc
Confidence 9999 89999999999999999998872111000 0111122333333322211100 00001111111123
Q ss_pred EEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCC
Q 008647 161 VNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSL 240 (558)
Q Consensus 161 ~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~ 240 (558)
++++.|+++|+.+|+++|+|++|+++++...|+|||++.|+|.|+++.|++|++.+||++++...+.+.+.... ..
T Consensus 199 ~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~----~~ 274 (574)
T KOG1159|consen 199 AKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS----SP 274 (574)
T ss_pred cchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc----cc
Confidence 89999999999999999999999999988999999999999999999999999999999986655555443221 11
Q ss_pred CCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCC
Q 008647 241 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 320 (558)
Q Consensus 241 ~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~ 320 (558)
.+-+|.|+|+++++++|+||++.|+++||..|++|++|++||++|++++|++|.++|++|+.+++||++|+|++|+++++
T Consensus 275 ~~~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~l 354 (574)
T KOG1159|consen 275 LPLLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKL 354 (574)
T ss_pred ccccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccC
Confidence 22588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCC
Q 008647 321 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 400 (558)
Q Consensus 321 ~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F 400 (558)
|++++++++ |.++||+|||||+|..+ .++|+|++|+|++...+.|.|+||+||++|++| +.|.+.+..|++
T Consensus 355 p~~yl~d~~-P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g------~~i~~~v~~g~l 425 (574)
T KOG1159|consen 355 PIDYLLDLL-PVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPG------DEIPIKVRPGTL 425 (574)
T ss_pred CHHHHHHhc-cccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCC------CeEEEEEecCcc
Confidence 999999999 99999999999999864 499999999999999999999999999999999 899999999999
Q ss_pred cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecC
Q 008647 401 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSRE 480 (558)
Q Consensus 401 ~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~ 480 (558)
.+|.+.+.|+||||+|||||||||+++++..+ ...+..||||||+++.||+|.+||.++.+.+ ++.|||||
T Consensus 426 ~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q-----~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~----~~~AFSRD 496 (574)
T KOG1159|consen 426 YFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ-----GDKENVLFFGCRNKDKDFLYEDEWTELNKRA----FHTAFSRD 496 (574)
T ss_pred ccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh-----ccCCceEEEecccCCccccccchhhhhhcch----hhhhcccc
Confidence 99988899999999999999999999999872 2355699999999999999999999887654 45599999
Q ss_pred CCCccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 481 GSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 481 ~~~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++.|.||||.|+++.+.+|+++. .++.|||||++..|..+|.++|.+|+.+.++.+.|.|. |++.|+|.+||+.|+|
T Consensus 497 qe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 497 QEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred cccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999999999999999999886 79999999998899999999999999999999777666 9999999999999999
|
|
| >PRK10953 cysJ sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-97 Score=812.85 Aligned_cols=491 Identities=29% Similarity=0.503 Sum_probs=430.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||||||||+|+|||||+.||+||..... ..|++++|||||||||+|++||+++|++|++|+++||+++++++.
T Consensus 108 ~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~--~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d 185 (600)
T PRK10953 108 QEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKA--PKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVD 185 (600)
T ss_pred cCCeEEEEECCCCCCCCChhHHHHHHHHhhCcC--cCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccc
Confidence 467899999999999999999999999976432 239999999999999999999999999999999999999999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeE
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRV 161 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
+|.+ ++++|++|++++|++|.+........ +. .. .. . . . . .....+++..+|+.+
T Consensus 186 ~D~~--~e~~~~~W~~~~~~~l~~~~~~~~~~-----~~----~~--~~--~-~--~-~------~~~~~~~~~~~p~~a 240 (600)
T PRK10953 186 ADVE--YQAAASEWRARVVDALKSRAPAVAAP-----SQ----SV--AT--G-A--V-N------EIHTSPYSKEAPLTA 240 (600)
T ss_pred cccc--cHHHHHHHHHHHHHHHHhhcCCcccc-----cc----cc--cc--c-c--c-c------ccccCCCCCCCCeEE
Confidence 7754 89999999999999998765421100 00 00 00 0 0 0 0 001135677889999
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|+.|++||.++++|+|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|.+..
T Consensus 241 ~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~------------- 307 (600)
T PRK10953 241 SLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG------------- 307 (600)
T ss_pred EEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-------------
Confidence 9999999999999999999999998888999999999999999999999999999999988876531
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 321 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~ 321 (558)
.++|++++|++|+||+. |++.+|+.++.++.++. |+++. ++++.+.+|.. +++++|||.+|| ++++
T Consensus 308 ----~~~tl~~~l~~~~dl~~-~~~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~ 373 (600)
T PRK10953 308 ----KTLPLAEALQWHFELTV-NTANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLD 373 (600)
T ss_pred ----CCCCHHHHHHHhcccCC-CcHHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCC
Confidence 26799999999999998 48899999999998754 33443 35566777765 689999999997 6899
Q ss_pred hhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeCC-C
Q 008647 322 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-N 399 (558)
Q Consensus 322 ~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~g-~ 399 (558)
++||++++ |+++||+|||||+|..++++++|+|+++.|.. .|+.+.|+||+||.+ +++| +.|.|.+|.| .
T Consensus 374 ~~q~l~ll-~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~ 445 (600)
T PRK10953 374 AEQLIGLL-RPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEE------GEVRVFIEHNDN 445 (600)
T ss_pred HHHHHHhC-CCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCC------CEEEEEeccCCc
Confidence 99999999 99999999999999777899999999998875 577889999999996 8999 8999999876 8
Q ss_pred CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEec
Q 008647 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSR 479 (558)
Q Consensus 400 F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr 479 (558)
|++|.++.+|+||||+||||||||||++++.. .+ ..+++|||||||+...|++|++||++|.+++.+++++++|||
T Consensus 446 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~---~~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSR 521 (600)
T PRK10953 446 FRLPANPETPVIMIGPGTGIAPFRAFMQQRAA---DG-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSR 521 (600)
T ss_pred ccCCCCCCCCEEEEecCcCcHHHHHHHHHHHH---cC-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECC
Confidence 99998888999999999999999999999876 22 457999999999966699999999999999999999999999
Q ss_pred CCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 480 EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 480 ~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++..|+||||+|.++.+++++++.++++|||||+++.|+++|+++|.+|+.+++++++++|++|+++|+++|||++|||
T Consensus 522 d~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 522 DQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9888999999999999999999988999999999768999999999999999999999999999999999999999999
|
|
| >TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-95 Score=803.74 Aligned_cols=491 Identities=32% Similarity=0.579 Sum_probs=431.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||||||||+|+||+||..||+||..... ..|++++|||||||||+|++||++++++|++|+++||+++++++.
T Consensus 105 ~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~--~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~ 182 (597)
T TIGR01931 105 KERLLLLVISTQGEGEPPEEAISFHKFLHSKKA--PKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVD 182 (597)
T ss_pred cCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCC--cccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeecccc
Confidence 467899999999999999999999999987532 239999999999999999999999999999999999999999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeE
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRV 161 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
+|.+ ++..|++|++++|++|.+.+..... . +.+.+.... . .....+++..+||.+
T Consensus 183 ~D~~--~e~~~~~W~~~~~~~l~~~~~~~~~-----~------~~~~~~~~~-------~-----~~~~~~~~~~~p~~a 237 (597)
T TIGR01931 183 ADLD--YDANAAEWRAGVLTALNEQAKGSAS-----T------PSLSETPAR-------S-----QTATSVYSKQNPFRA 237 (597)
T ss_pred CccC--hHHHHHHHHHHHHHHHHhhccCccC-----C------Ccceecccc-------c-----ccccCCccCCCCeEE
Confidence 8864 8899999999999999876532110 0 111110000 0 011234667889999
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|++|++||..+++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..+++.
T Consensus 238 ~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-------------- 303 (597)
T TIGR01931 238 EVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-------------- 303 (597)
T ss_pred EEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC--------------
Confidence 999999999999999999999999988999999999999999999999999999999998887653
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 321 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~ 321 (558)
+.++|++++|++|+||+. +++.||+.||++++|+..++.| ++++.+.+|+. +++++|||.+|| ++++
T Consensus 304 ---~~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~~~------~~~~~~~~y~~--~~~~~dvl~~fp-~~~~ 370 (597)
T TIGR01931 304 ---GKTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKALI------ADNEKLKAYIQ--NTPLIDLIRDYP-ADLD 370 (597)
T ss_pred ---CCCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHHHh------cCHHHHHHHHc--CCCHHHHHHHCC-CCCC
Confidence 126799999999999998 6899999999999998655433 25677888886 689999999999 8999
Q ss_pred hhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeCC-C
Q 008647 322 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-N 399 (558)
Q Consensus 322 ~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~g-~ 399 (558)
+|||++++ |++.||+|||||+|..++++++|+|+++.|.. .++.+.|.||+||++ +++| +.|.+.++.| .
T Consensus 371 ~gq~v~ll-~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~ 442 (597)
T TIGR01931 371 AEQLISLL-RPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEG------DTVPVYIEPNDN 442 (597)
T ss_pred HHHHHHhC-cccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCC------CEEEEEEeeCCc
Confidence 99999999 99999999999999766889999999998864 677889999999998 9999 8999998765 8
Q ss_pred CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEec
Q 008647 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSR 479 (558)
Q Consensus 400 F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr 479 (558)
|++|.++.+|+||||+||||||||||++++.. .+ ..++++||||||+...|++|++||++|.+.+.+++++++|||
T Consensus 443 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~---~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSR 518 (597)
T TIGR01931 443 FRLPEDPDTPIIMIGPGTGVAPFRAFMQERAE---DG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSR 518 (597)
T ss_pred ccCCCCCCCCEEEEcCCcCchhHHHHHHHHHH---cc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEec
Confidence 99998778899999999999999999999876 22 457899999999954599999999999999999889999999
Q ss_pred CCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 480 EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 480 ~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++..++|||++|.++.+.+++++..+++|||||+++.|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 519 d~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 519 DQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8777999999999998899998888899999994389999999999999999999999999999999999999999999
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. |
| >KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-96 Score=793.42 Aligned_cols=543 Identities=43% Similarity=0.756 Sum_probs=466.7
Q ss_pred cEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccC
Q 008647 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGD 83 (558)
Q Consensus 4 ~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d 83 (558)
.+++|+.+|||+|+||||+..|++||...... ....++|+|||+|++.|++||++|+.+|++|.++||++++.++.||
T Consensus 94 ~l~~~~~at~g~gd~~dn~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgd 171 (645)
T KOG1158|consen 94 KLLVVVLATYGEGDPPDNAEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGD 171 (645)
T ss_pred ceeeeeeehhcCCCCCccHHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 58999999999999999999999999886432 2344899999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCC--CCCCCCCCCCCceeE
Q 008647 84 DDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNM--PNGNASFDIHHPCRV 161 (558)
Q Consensus 84 ~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 161 (558)
+..+.+++|..|++.+|+.+++.+..+..... .... ....+................... .....+++..+|+.+
T Consensus 172 d~~~~e~~f~~w~~~~~~~~~~~f~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (645)
T KOG1158|consen 172 DDAGLEEDFRTWKKPLLPELCETFSLEEDEAT-KEDE--TIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPA 248 (645)
T ss_pred ccccchhHHHHHHHHHhHhhhheeeecccccc-CCcc--cccccccCcCccccccccccCccccccccCCcchhcccchh
Confidence 99999999999999999999998875432110 0000 000000000000000000000001 112356778899999
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCC-CCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDG-TPRGSSL 240 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~~ 240 (558)
.++.+..|..+.+.+.++|++++..++++.|+||||++|+|.|+++.|++++++|+++++..+.++...... ++..+..
T Consensus 249 ~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (645)
T KOG1158|consen 249 LVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKK 328 (645)
T ss_pred hhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCcccc
Confidence 999999999888889999999999988999999999999999999999999999999876544443322221 2334567
Q ss_pred CCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCC
Q 008647 241 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 320 (558)
Q Consensus 241 ~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~ 320 (558)
++|++.|+|++++|++|+||+++|++++|+.||.||+|+.||++|+.|+|.+|..+|.+|+....+|++|||.+||++++
T Consensus 329 ~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kp 408 (645)
T KOG1158|consen 329 PHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKP 408 (645)
T ss_pred CCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCCccEEE--EEeeC
Q 008647 321 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAP--IFIRP 397 (558)
Q Consensus 321 ~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~-~~~~G~~S~~L~~l~~G~~~~~~~~v~--v~~p~ 397 (558)
|+.++++++ |.++||+|||||+|..+++++++++.++.|.+++| ..+.|+||+||.++++| +.+. +....
T Consensus 409 P~~~ll~~l-p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~------~~~~~~~~~~~ 481 (645)
T KOG1158|consen 409 PLPHLLELL-PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG------EKVPNPVPVGK 481 (645)
T ss_pred CHHHHHHhC-ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc------cccCcceeecc
Confidence 999999999 99999999999999999999999999999999886 67789999999999999 5666 44555
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCC-CCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA-QLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~-~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
..|++|.++.+|+||||+||||||||||+|++...++++. ....+|||||||+.+.|++|++||+++.+.+.++++.+|
T Consensus 482 s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A 561 (645)
T KOG1158|consen 482 SMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVA 561 (645)
T ss_pred cceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheee
Confidence 6899999999999999999999999999999998766552 122389999999999899999999999999999999999
Q ss_pred EecCC-CCccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeE
Q 008647 477 FSREG-SQKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYL 554 (558)
Q Consensus 477 ~Sr~~-~~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 554 (558)
|||++ +.+.||||++++++++||+++ .++++|||||++.+|+++|.++|.+|+++.+++++++|.+++++|++++||+
T Consensus 562 ~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~ 641 (645)
T KOG1158|consen 562 FSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYI 641 (645)
T ss_pred eeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccc
Confidence 99998 789999999999999999988 5599999999976699999999999999999999999999999999999999
Q ss_pred EeeC
Q 008647 555 RDVW 558 (558)
Q Consensus 555 ~dvw 558 (558)
+|||
T Consensus 642 ~DVw 645 (645)
T KOG1158|consen 642 EDVW 645 (645)
T ss_pred cccC
Confidence 9999
|
|
| >COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-92 Score=761.92 Aligned_cols=489 Identities=36% Similarity=0.638 Sum_probs=443.3
Q ss_pred EEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCC
Q 008647 5 IYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 84 (558)
Q Consensus 5 ~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~ 84 (558)
.++||+||+|+|++|+||..||++|..... ..|.+++||||||||++|+.||.+++.++++|.++||+++.+++.+|.
T Consensus 97 ~~~~i~st~geGe~p~na~~f~~~l~~~~a--~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~ 174 (587)
T COG0369 97 LLLFVVSTQGEGEPPDNAVAFHEFLKGKKA--PKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADV 174 (587)
T ss_pred ceEEEEccccCCCCCCchHHHHHHhccccc--ccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCcccccc
Confidence 789999999999999999999999987432 349999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeEEEE
Q 008647 85 DQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVA 164 (558)
Q Consensus 85 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 164 (558)
+ +++....+|...+++.+...+........ .+. . . + ....++....++.+.+.
T Consensus 175 ~-~~e~~~~~w~~~~~~~l~~~~~~~~~~~~--~~~---------~--~-------~------~~~~~~~~~~~~~a~~~ 227 (587)
T COG0369 175 Q-DFEAAAAPWRDDVLELLKSKFPGQEAAPA--QVA---------T--S-------P------QSESPYSKPAPSVAILL 227 (587)
T ss_pred c-ccchhhhHHHHHHHHHHHhhccccccccc--ccc---------c--h-------h------cccccccccCcceeEee
Confidence 7 79999999999999998887654321110 000 0 0 0 01234456778899999
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCC
Q 008647 165 VRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPF 244 (558)
Q Consensus 165 ~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (558)
.|++|+..+++++++||+|+++++++.|+|||+++|+|+|+++.|+++|+.+||++++.|.+.
T Consensus 228 ~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~----------------- 290 (587)
T COG0369 228 ENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD----------------- 290 (587)
T ss_pred ccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------
Confidence 999999999999999999999998999999999999999999999999999999998666221
Q ss_pred CCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCChhH
Q 008647 245 PGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGV 324 (558)
Q Consensus 245 ~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~~~ 324 (558)
+.++++.++|++|+||+..| |.|+..|+.|+.++..++.|..++ ...++.|.. +++++|+|.+||++++|+++
T Consensus 291 ~~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~ 363 (587)
T COG0369 291 GETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEE 363 (587)
T ss_pred CCcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHH
Confidence 34789999999999999999 999999999999999999999885 566777776 78999999999999999999
Q ss_pred HHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCC-CCCCCCccEEEEEeeCC-CCcC
Q 008647 325 FFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCSWAPIFIRPS-NFKL 402 (558)
Q Consensus 325 ~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~-G~~~~~~~~v~v~~p~g-~F~l 402 (558)
+++.+ |+++||.|||||+|..++++++|||.+|+|..+ ++.|.|+||+||+++.. | +.+.|.++.+ +|.+
T Consensus 364 li~~l-~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g------~~i~v~v~~n~nf~l 435 (587)
T COG0369 364 LIDLL-PPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEG------DTIPVFVQPNKNFRL 435 (587)
T ss_pred HHHhC-ccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCC------CeEEEEeccCCcccc
Confidence 99999 999999999999999999999999999999987 55889999999999777 6 8999999998 9999
Q ss_pred CCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC
Q 008647 403 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482 (558)
Q Consensus 403 p~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~ 482 (558)
|.++.+||||||+||||||||+|+|++... + ..+++|||||||+.+.||+|++||++|.+.|.++++.+||||++.
T Consensus 436 p~~~~~PiIMIG~GTGIAPFRafvq~r~~~---~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~ 511 (587)
T COG0369 436 PEDPETPIIMIGPGTGIAPFRAFVQERAAN---G-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE 511 (587)
T ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHhc---c-ccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC
Confidence 999889999999999999999999999873 3 456899999999988899999999999999999999999999999
Q ss_pred CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 483 QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 483 ~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+|.||||+|++++++|++++++++.|||||++..|.++|.++|.+++.+.++++.|+|.++++.|++++||++|||
T Consensus 512 ~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 512 EKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 9999999999999999999999999999996699999999999999999999999999999999999999999999
|
|
| >cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-79 Score=648.84 Aligned_cols=389 Identities=51% Similarity=0.907 Sum_probs=358.5
Q ss_pred CCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCC-CccEEEEecCCCCC
Q 008647 155 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS-LELLFSLHTDNEDG 233 (558)
Q Consensus 155 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~ 233 (558)
..+||.|+|++|++||++ ++++++||+|++++.+++|+|||+|+|+|+|+++.|+++|++||++ ++..|.+......
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~- 79 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEP- 79 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcc-
Confidence 356899999999999998 8999999999998778999999999999999999999999999999 8888888755431
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHH
Q 008647 234 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 313 (558)
Q Consensus 234 ~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~ 313 (558)
.+...|+|.|+|++++|++|+||+++|++.||+.|+.||+|+++|++|.+|+| +|.++|.+|+.++++|++|+|.
T Consensus 80 ----~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 80 ----ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----cccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 12456899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcC----------
Q 008647 314 EFPSAT---PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI---------- 380 (558)
Q Consensus 314 ~f~~~~---~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~---------- 380 (558)
+||+++ +|++.|++++ |+++||+|||||+|..+++.++|+|+++++.++.++.+.|+||+||+++.
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999999 99999999999999877899999999999999888889999999999977
Q ss_pred -----------CCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEecc
Q 008647 381 -----------PLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCR 449 (558)
Q Consensus 381 -----------~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R 449 (558)
+| +.|.+.+|.|.|.+|.+..+|+||||+|||||||+||++++....+.+...++++||||||
T Consensus 234 ~~~~~~~~~~~~g------~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R 307 (416)
T cd06204 234 PYYLSGPRKKGGG------SKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCR 307 (416)
T ss_pred ccccccccccCCC------CeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCC
Confidence 56 8999999999999997777899999999999999999999875432232357999999999
Q ss_pred CCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcc-hHHHHHHHHHHH
Q 008647 450 NRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTI 528 (558)
Q Consensus 450 ~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~-M~~~v~~~L~~i 528 (558)
+++.|++|++||++|++.+.++++++++||++..++|||++|.++.+.+++++.+++.|||||| +. |+++|.++|.++
T Consensus 308 ~~~~d~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp-~~~M~~~V~~~L~~i 386 (416)
T cd06204 308 HPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGD-AKNMARDVEKTLLEI 386 (416)
T ss_pred CCCcccchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECC-cccchHHHHHHHHHH
Confidence 9844999999999999988888999999998877899999999888888888877899999999 66 999999999999
Q ss_pred HHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 529 VQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 529 ~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+++++++++++|++|+++|+++|||++|||
T Consensus 387 ~~~~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 387 LAEQGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo |
| >cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=631.41 Aligned_cols=379 Identities=40% Similarity=0.745 Sum_probs=350.1
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCC
Q 008647 163 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 242 (558)
Q Consensus 163 v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (558)
|++|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..++++.... .+...
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~------~~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ------QRGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc------cccCC
Confidence 678999999999999999999998778999999999999999999999999999999999988875441 12456
Q ss_pred CCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCCh
Q 008647 243 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPI 322 (558)
Q Consensus 243 ~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~ 322 (558)
|+|.|+|++++|++||||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.+| ++++++|+|.+||++++|+
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 8899999999999999999999999999999999999999999999999999999988 7899999999999999999
Q ss_pred hHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcC
Q 008647 323 GVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL 402 (558)
Q Consensus 323 ~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~l 402 (558)
+.+++++ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++++| +.|.+.+|.|.|.+
T Consensus 153 ~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~~p~g~F~l 225 (382)
T cd06207 153 EQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG------QRVTVFIKKSSFKL 225 (382)
T ss_pred HHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC------CEEEEEEECCcccC
Confidence 9999999 9999999999999976678999999999998887888899999999999999 89999999999999
Q ss_pred CCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC
Q 008647 403 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482 (558)
Q Consensus 403 p~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~ 482 (558)
|.+..+|+||||+|||||||+||++++....+.+...++++||||||+.+.|++|++||++|++.+.++++++++||++.
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP 305 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 97778899999999999999999999876433333568999999999994499999999999999998899999999987
Q ss_pred CccchhhhhHhcHHHHHHhhhCC-CEEEEeCCCcc-hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 483 QKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKG-MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 483 ~k~yvq~~l~~~~~~l~~~~~~~-~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.++|||+++.++.+.+++++.++ +.|||||| +. |+++|+++|.+++++++++++++|++++++|+++|||++|||
T Consensus 306 ~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 306 KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 79999999999888888877655 49999999 66 999999999999999999999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe |
| >cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-77 Score=630.48 Aligned_cols=382 Identities=38% Similarity=0.690 Sum_probs=345.2
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCC--CccEEEEecCCCCCCCCCCCC
Q 008647 163 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRGSSL 240 (558)
Q Consensus 163 v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 240 (558)
|++|++||+++++++++||+|++++.+++|+|||+|+|+|+|+++.|+++|++||++ ++..++++........ +...
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKK-NAKV 80 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccc-cccc
Confidence 678999999999999999999998778999999999999999999999999999999 7888888743221111 1235
Q ss_pred CCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCC
Q 008647 241 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 320 (558)
Q Consensus 241 ~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~ 320 (558)
+.++|.|+|++++|++|+||+++|+++||+.||.||+|+++|++|.+|++.+|+++|++|+.++++|++|||++||++++
T Consensus 81 ~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 81 PVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 66888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcC-----CCCCCCCccEEEEEe
Q 008647 321 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI-----PLEGNGDCSWAPIFI 395 (558)
Q Consensus 321 ~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~-----~G~~~~~~~~v~v~~ 395 (558)
|++.+++++ |+++||+|||||+|..+++.++|+|+++.+++ .|+||+||++++ +| +.|.+.+
T Consensus 161 pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G------~~v~i~~ 227 (398)
T cd06203 161 PLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHG------VKVPFYL 227 (398)
T ss_pred CHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCC------CEEEEEE
Confidence 999999999 99999999999999876789999999987544 599999999988 88 8999999
Q ss_pred e-CCCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhc--CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcc
Q 008647 396 R-PSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 471 (558)
Q Consensus 396 p-~g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~ 471 (558)
+ .|.|.+|.+ ..+|+||||+|||||||+||++++.....+ +...++++||||||+++.|++|++||++|++.+.++
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~ 307 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILT 307 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCc
Confidence 5 568999876 678999999999999999999998763311 224689999999999944999999999999999998
Q ss_pred EEEEEEecCCC---CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 008647 472 ELILAFSREGS---QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 547 (558)
Q Consensus 472 ~~~~a~Sr~~~---~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 547 (558)
+++++|||++. .++|||+++.++.+.+++++ ..++.||||||++.|+++|+++|.+|+++++++++++|++|+++|
T Consensus 308 ~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l 387 (398)
T cd06203 308 RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARL 387 (398)
T ss_pred eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999876 48999999999998998876 468999999996689999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 008647 548 QMEGRYLRDVW 558 (558)
Q Consensus 548 ~~~~Ry~~dvw 558 (558)
+++|||++|||
T Consensus 388 ~~~gRy~~dvw 398 (398)
T cd06203 388 RKEDRYLEDVW 398 (398)
T ss_pred HHcCCeeeecC
Confidence 99999999999
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme |
| >cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-76 Score=625.94 Aligned_cols=387 Identities=41% Similarity=0.717 Sum_probs=343.8
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecCCHHHHHHHHHHhCCCC--ccEEEEecCCCCCCCCC-
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQSL--ELLFSLHTDNEDGTPRG- 237 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~~~~~~~~~~~~~~~- 237 (558)
+|++|++||++++.|+++||+||+++ ++++|+|||+|+|+|+|+++.|+++|++|++.+ +..+.++.........+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 36789999999999999999999986 589999999999999999999999999999854 67777765433221111
Q ss_pred --CCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhC
Q 008647 238 --SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEF 315 (558)
Q Consensus 238 --~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f 315 (558)
.....+++.|+|++++|++|+||+++|++.+|+.|+.||+|+.+|++|.+|++ +.+.|++|+.++++|++|+|.+|
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f 158 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEF 158 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhC
Confidence 11234566699999999999999999999999999999999999999999986 88899999999999999999999
Q ss_pred CCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCC--CCcccCcccHHhhhcCCCCCCCCccEEEE
Q 008647 316 PSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPI 393 (558)
Q Consensus 316 ~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~--~~~~~G~~S~~L~~l~~G~~~~~~~~v~v 393 (558)
|++++|++.+++++ |+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++++| +.|.+
T Consensus 159 ~s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v 231 (406)
T cd06202 159 PSLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG------DTVPC 231 (406)
T ss_pred CcCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC------CEEEE
Confidence 99999999999999 9999999999999987789999999999877653 346789999999999999 89999
Q ss_pred EeeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhh----cCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 394 FIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 394 ~~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~----~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.++.+ .|.+|.+..+|+||||+||||||||||++++..... .+...++++||||||+++.|++|++||+++.+.+
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~ 311 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG 311 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcC
Confidence 98754 899998778999999999999999999999865321 1224689999999999944999999999999999
Q ss_pred CccEEEEEEecCCC-CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 008647 469 VISELILAFSREGS-QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 546 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 546 (558)
.+++++++|||++. .++|||+.|.++.+.+++++ ..++.|||||| +.|+++|.++|.+++++++++++++|++|+++
T Consensus 312 ~~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~ 390 (406)
T cd06202 312 VLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILK 390 (406)
T ss_pred CCceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99899999999865 58999999999999999976 57899999999 68999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 008647 547 FQMEGRYLRDVW 558 (558)
Q Consensus 547 l~~~~Ry~~dvw 558 (558)
|+++|||++|||
T Consensus 391 l~~~gRy~~dvw 402 (406)
T cd06202 391 LRDENRYHEDIF 402 (406)
T ss_pred HHHcCCeEEEec
Confidence 999999999999
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. |
| >cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-75 Score=611.67 Aligned_cols=376 Identities=35% Similarity=0.612 Sum_probs=339.3
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|+.|++||+++++++++||+|++++ +++|+|||+|+|+|+|+++.|+++|++||++++..|+++.... ...
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~-------~~~ 72 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS-------ATG 72 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC-------CCC
Confidence 47899999999999999999999976 7999999999999999999999999999999999988876332 234
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 321 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~ 321 (558)
.|++.|+|++++|++|+||+++|+++||+.||.||+|+++|++|..++ ++.|.+++..+++|++|+|.+||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 578889999999999999999999999999999999999999999884 4679999999999999999999999999
Q ss_pred hhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCCccEEEEE--eeCC
Q 008647 322 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIF--IRPS 398 (558)
Q Consensus 322 ~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~-~~~~G~~S~~L~~l~~G~~~~~~~~v~v~--~p~g 398 (558)
++||++++ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||+++++| +.|.+. +|.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPG------DSIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCC------CeEEEEEecCCC
Confidence 99999999 99999999999999766789999999998876654 56789999999999999 888865 5678
Q ss_pred CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEe
Q 008647 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 478 (558)
Q Consensus 399 ~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~S 478 (558)
.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+.+.|++|++||++|++.+. +++++++|
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~-~~l~~a~S 300 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGV-VSVRRAYS 300 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCC-eEEEEEec
Confidence 99998777789999999999999999999987643233345789999999999449999999999998654 48999999
Q ss_pred cCCCC-ccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHCCCe
Q 008647 479 REGSQ-KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQE----NVDSSKAESIVKKFQMEGRY 553 (558)
Q Consensus 479 r~~~~-k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~Ry 553 (558)
|++.. ++|||+.|.+..+.+++++.+++.|||||| ++|+++|.++|.+++.+++ ++++++|++|+++|+++|||
T Consensus 301 r~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry 379 (384)
T cd06206 301 RPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRY 379 (384)
T ss_pred ccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCe
Confidence 98764 899999998888888887778899999999 6799999999999999999 99999999999999999999
Q ss_pred EEeeC
Q 008647 554 LRDVW 558 (558)
Q Consensus 554 ~~dvw 558 (558)
++|||
T Consensus 380 ~~dvw 384 (384)
T cd06206 380 ATDVF 384 (384)
T ss_pred eeecC
Confidence 99999
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la |
| >cd06199 SiR Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=579.89 Aligned_cols=356 Identities=40% Similarity=0.645 Sum_probs=320.8
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 46789999999999999999999998789999999999999999999999999999998876531
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCC--CCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SAT 319 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~--~~~ 319 (558)
+++.++|++++|++|+||+++ .++.|+.||+++.++++|.. +|++.|.+ .+|++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 345689999999999999997 55568999999988888775 67777764 489999999999 999
Q ss_pred CChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhc-CCCCCCCCccEEEEEeeCC
Q 008647 320 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 320 ~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l-~~G~~~~~~~~v~v~~p~g 398 (558)
+++|||++++ |+++||+|||||+|..+++.++|+|+++.+.++ ++.+.|.||+||+++ ++| +.|.++++.|
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~G------d~v~v~~~~~ 203 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEG------DTVPVFVQPN 203 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCC------CEEEEEEecC
Confidence 9999999999 999999999999998767899999999987763 466789999999995 589 8999998765
Q ss_pred -CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 -~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
.|.+|.+..+|+||||+|||||||+||++++... + ..++++||||||+...|++|++||+++++.+.+++++++|
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---G-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 8999977778999999999999999999998752 2 4588999999999845999999999999999888999999
Q ss_pred ecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEee
Q 008647 478 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDV 557 (558)
Q Consensus 478 Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 557 (558)
||++..++|||+.+.++.+.+++++..++.||||||...|+++|+++|.+|+++++++++++|++++++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99987889999999998888888887789999999933899999999999999999999999999999999999999999
Q ss_pred C
Q 008647 558 W 558 (558)
Q Consensus 558 w 558 (558)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. |
| >PRK06214 sulfite reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=590.24 Aligned_cols=368 Identities=37% Similarity=0.632 Sum_probs=327.3
Q ss_pred CCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCC
Q 008647 151 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 230 (558)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 230 (558)
..++..+||.++|++|++||+++++++++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++++..+
T Consensus 161 ~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~------ 234 (530)
T PRK06214 161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------ 234 (530)
T ss_pred CccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc------
Confidence 45678899999999999999999999999999999988899999999999999999999999999999976432
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHH
Q 008647 231 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 310 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d 310 (558)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.++.+... ...+++|
T Consensus 235 ---------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vld 292 (530)
T PRK06214 235 ---------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLA 292 (530)
T ss_pred ---------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHH
Confidence 2689999999999999965 899999999998776 77888886543332221 2468999
Q ss_pred HHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCcc
Q 008647 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCS 389 (558)
Q Consensus 311 ~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~ 389 (558)
+|++||+++++++++++++ |+++||+|||||+|..+++.++|+|+++.|.. .++.+.|+||+||++ +++| +
T Consensus 293 vL~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~G------d 364 (530)
T PRK06214 293 ALEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPG------T 364 (530)
T ss_pred HHHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCC------C
Confidence 9999999999999999999 99999999999999766789999999998764 467788999999985 9999 8
Q ss_pred EEEEEeeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 WAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 ~v~v~~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.++++.+ +|.+|.+..+|+||||+||||||||||++++... + ..++++||||||+.+.|++|++||+++.+.+
T Consensus 365 ~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~---~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g 440 (530)
T PRK06214 365 RVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAAT---K-APGRNWLFFGHQRSATDFFYEDELNGLKAAG 440 (530)
T ss_pred EEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHh---c-CCCCeEEEEEecCChhhhHHHHHHHHHHHhC
Confidence 999987543 5999877778999999999999999999998752 1 4578999999987666999999999999999
Q ss_pred CccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 008647 469 VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 548 (558)
.+++++++|||++..++|||++|.++.+++++++.++++||||||++.|.++|+++|.+|+++++++++++|++|+++|+
T Consensus 441 ~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~ 520 (530)
T PRK06214 441 VLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELK 520 (530)
T ss_pred CceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 98889999999988899999999998889999888889999999955688999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 008647 549 MEGRYLRDVW 558 (558)
Q Consensus 549 ~~~Ry~~dvw 558 (558)
++|||++|||
T Consensus 521 ~~gRY~~Dvw 530 (530)
T PRK06214 521 KAGRYQADVY 530 (530)
T ss_pred HCCCEEEecC
Confidence 9999999999
|
|
| >PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=373.72 Aligned_cols=218 Identities=44% Similarity=0.783 Sum_probs=188.9
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
||+.++||.|+|++|++||+++++|+++||+|++++.+++|+|||+|+|+|+|+++.|++++++||+++++.|+++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 57789999999999999999999999999999999889999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
. .....++|.++||+++|++|+||+++|++.||+.|+.||+|+++|++|++|++.+|++.|.+|+.++++|++|+
T Consensus 82 ~-----~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 82 N-----NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp T-----SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred c-----cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 3 13567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHH
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 375 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~ 375 (558)
|.+||++++|+++|++++ |+++||+|||||+|..+++.++|||++++|+++.|+.+.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999 999999999999999999999999999999889999999999998
|
Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B .... |
| >PLN03115 ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=357.77 Aligned_cols=273 Identities=28% Similarity=0.479 Sum_probs=229.0
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.|..++|+.++|+.|.+++.++...+++||+|+.++ .+.|+||..++|.|+..+
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~------------------------- 137 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID------------------------- 137 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC-------------------------
Confidence 477899999999999999998877899999999765 689999999999765321
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
.+|
T Consensus 138 -----------------------------------------------------------~~g------------------ 140 (367)
T PLN03115 138 -----------------------------------------------------------KNG------------------ 140 (367)
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
.+..+|+|||||+|.. .++.++|+|+++.|.++.|+...|.||+||+++++|
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~G------ 195 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 195 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCc------
Confidence 2235799999999843 246899999988887766777789999999999999
Q ss_pred cEEEEEeeCCCCc-CCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNFK-LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F~-lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.+.+|.|.|. +|.+..+|+||||+|||||||+||++++......+ ...++++||||||+.+ |++|.+||++|++
T Consensus 196 d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 196 AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 8999999999654 56556789999999999999999999875422111 0146899999999998 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
... +++++.++||++. .++|||++|.++.+++++++. .+++|||||| ++|+++|.++|.++...++ + ++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cH
Confidence 764 7899999999865 478999999998888888774 4689999999 8999999999999998764 3 48
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
.+++++|+++|||++|||
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 999999999999999998
|
|
| >cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=330.12 Aligned_cols=217 Identities=50% Similarity=0.904 Sum_probs=191.4
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC-CCcCCCCCCCCEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIM 412 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g-~F~lp~~~~~plil 412 (558)
.+|+|||+|.|....+.++|+|+.+.++.+.+..+.|.+|.||+++++| +.|.+.+|.| .|.++.+..+|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~G------d~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLG------AKVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCC------CEEEEEEecCCcccCCCCCCCCEEE
Confidence 4599999999965468999999988765555556679999999999999 8999999999 99998766789999
Q ss_pred EccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCC-CCccccHHHHHHHHHcCCccEEEEEEecCCCC-ccchhhh
Q 008647 413 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNR-RMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHK 490 (558)
Q Consensus 413 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~-~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~-k~yvq~~ 490 (558)
||+|||||||+||+++++....++...++++||||+|+. + |++|.++|++|++.+.++++++++||++.. ++||++.
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~-d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~ 199 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFAS-DYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDK 199 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcc-cccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHH
Confidence 999999999999999987632112245789999999999 7 999999999999988888999999997653 7899999
Q ss_pred hHhcHHHHHHhhhCCCEEEEeCCCcc-hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 491 MMDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 491 l~~~~~~l~~~~~~~~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+.+..+.+.+++.+++.||+||| +. |+++|.+.|.+++.++++++.++|++++++|+++|||++|+|
T Consensus 200 l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 200 LKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 88777777776666779999999 88 999999999999999999999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t |
| >TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=321.95 Aligned_cols=269 Identities=24% Similarity=0.442 Sum_probs=219.5
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 232 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 232 (558)
|..++|+.++|+.+++++..+...+++||+|+.++....|+||..+.|.++...
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~-------------------------- 190 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD-------------------------- 190 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--------------------------
Confidence 678889999999999999877677999999998765688999999999654210
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHH
Q 008647 233 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312 (558)
Q Consensus 233 ~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l 312 (558)
.+|
T Consensus 191 ----------------------------------------------------------~~g------------------- 193 (411)
T TIGR03224 191 ----------------------------------------------------------ASG------------------- 193 (411)
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 000
Q ss_pred HhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCC---CCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCcc
Q 008647 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCS 389 (558)
Q Consensus 313 ~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~---~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~ 389 (558)
.+...|+|||+|+|... .+.++|+|+++.. ...++.+.|.+|+||+++++| +
T Consensus 194 ------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~G------d 248 (411)
T TIGR03224 194 ------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKG------D 248 (411)
T ss_pred ------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCc------C
Confidence 12356999999987421 1479999998863 334566679999999999999 8
Q ss_pred EEEEEeeCCC-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 WAPIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 ~v~v~~p~g~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.+.+|.|. |.++....+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||++|.+..
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~ 326 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF 326 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC
Confidence 9999999995 7776555689999999999999999999887532222 467999999999999 999999999998765
Q ss_pred CccEEEEEEecCCC-CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 008647 469 VISELILAFSREGS-QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 546 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 546 (558)
. ++++++||++. .++|||+.+.+..+.+.+++. .++.||+||| ++|+++|.+.|.++..+. ++. +++++.+
T Consensus 327 ~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~~~ 399 (411)
T TIGR03224 327 I--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLEPR 399 (411)
T ss_pred c--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHHHH
Confidence 3 46779998654 589999999988777777665 4589999999 899999999999999654 343 5789999
Q ss_pred HHHCCCeEEeeC
Q 008647 547 FQMEGRYLRDVW 558 (558)
Q Consensus 547 l~~~~Ry~~dvw 558 (558)
|+++|||+.|+|
T Consensus 400 l~~~~r~~~e~~ 411 (411)
T TIGR03224 400 LRAEGRLHLETY 411 (411)
T ss_pred HHHCCCeEEecC
Confidence 999999999999
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB. |
| >PLN03116 ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=311.53 Aligned_cols=273 Identities=26% Similarity=0.407 Sum_probs=215.8
Q ss_pred CCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCC
Q 008647 154 DIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDG 233 (558)
Q Consensus 154 ~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 233 (558)
....++.++|+..+.++.+.+..++++|+|+.+. .+.|+||..+.|.++... .
T Consensus 20 ~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-~~~f~aGQy~~l~~~~~~--~------------------------ 72 (307)
T PLN03116 20 KPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGTN--P------------------------ 72 (307)
T ss_pred cCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC-CCceecCceEeeeCCCCC--h------------------------
Confidence 3566788999999999977766789999999774 689999999998654210 0
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHH
Q 008647 234 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 313 (558)
Q Consensus 234 ~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~ 313 (558)
. ..|
T Consensus 73 ~--------------------------------------------------------~~g-------------------- 76 (307)
T PLN03116 73 K--------------------------------------------------------KPG-------------------- 76 (307)
T ss_pred h--------------------------------------------------------hcC--------------------
Confidence 0 000
Q ss_pred hCCCCCCChhHHHHhhCCCCCCcccccCCCCCCC---CCeEEEEEEEEEccCCCCC----cccCcccHHhhhcCCCCCCC
Q 008647 314 EFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGR----IHKGVCSTWMKNAIPLEGNG 386 (558)
Q Consensus 314 ~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~---~~~i~l~v~vv~~~~~~~~----~~~G~~S~~L~~l~~G~~~~ 386 (558)
.+...|+|||||+|... ...++|+|+++.+.++... ...|.+|+||+++++|
T Consensus 77 -----------------~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G---- 135 (307)
T PLN03116 77 -----------------APHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPG---- 135 (307)
T ss_pred -----------------CcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCC----
Confidence 12246999999999532 2379999998765443211 1579999999999999
Q ss_pred CccEEEEEeeCCCCcC-CC-CCCCCEEEEccCccccchHHHHHHHHHHhhc-CCCCCCeEEEEeccCCCCccccHHHHHH
Q 008647 387 DCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNN 463 (558)
Q Consensus 387 ~~~~v~v~~p~g~F~l-p~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~-~~~~~~i~L~~G~R~~~~d~~y~~el~~ 463 (558)
+.|.|.+|.|.|.+ +. +..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|.+||++
T Consensus 136 --d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~ 212 (307)
T PLN03116 136 --DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFER 212 (307)
T ss_pred --CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHH
Confidence 89999999998776 43 4457999999999999999999987652110 01236899999999998 9999999999
Q ss_pred HHHcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHH
Q 008647 464 FEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSS 538 (558)
Q Consensus 464 ~~~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~ 538 (558)
|++.+. +++++.++||++. .++||++.|.+..+.++..+..++.||+||| +.|++++.+.|.+++.+. +++
T Consensus 213 l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~-g~~-- 288 (307)
T PLN03116 213 YLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER-GES-- 288 (307)
T ss_pred HHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-Ccc--
Confidence 998875 6789999999764 3679999888766665555556789999999 899999999999987764 453
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 008647 539 KAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 539 ~a~~~~~~l~~~~Ry~~dvw 558 (558)
|.++++.|+++|||++|+|
T Consensus 289 -~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 289 -WEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred -HHHHHHHHHHcCceEEecC
Confidence 6789999999999999999
|
|
| >cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=303.72 Aligned_cols=213 Identities=31% Similarity=0.494 Sum_probs=175.6
Q ss_pred CCCcccccCCCCCC---CCCeEEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCC-CCCC
Q 008647 333 LQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLP-ANPS 407 (558)
Q Consensus 333 ~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~-~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp-~~~~ 407 (558)
...|+|||||.|.. +++.++|+|+++.+.++.+ ..+.|.+|+||+++++| +.|.+.+|.|.|.+. .+..
T Consensus 62 ~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~~~~~~~~~~ 135 (286)
T cd06208 62 HKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPG------DDVQITGPVGKTMLLPEDPN 135 (286)
T ss_pred CCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCC------CEEEEEeecCCcccCCCCCC
Confidence 45799999999853 2468999999987644432 34559999999999999 899999999976554 3445
Q ss_pred CCEEEEccCccccchHHHHHHHHHHhhc-CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-ccEEEEEEecCCC---
Q 008647 408 VPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELILAFSREGS--- 482 (558)
Q Consensus 408 ~plilIa~GtGIAP~~s~l~~~~~~~~~-~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~~~~a~Sr~~~--- 482 (558)
+|+||||+|||||||+||++++...... ....++++|+||+|+.+ |++|.++|++++++.. ++++++++||++.
T Consensus 136 ~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~ 214 (286)
T cd06208 136 ATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNAD 214 (286)
T ss_pred CCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCC
Confidence 7999999999999999999998763100 11346899999999999 9999999999998754 6789999998754
Q ss_pred -CccchhhhhHhcHHHHHHhhhC-CCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 483 -QKEYVQHKMMDKAAQLWSLLSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 483 -~k~yvq~~l~~~~~~l~~~~~~-~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.++||++.+.+..+.+++.+.. ++.||+||| ++|+++|.+.|.+++. ...+|.+++++|+++|||+.|+|
T Consensus 215 g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 215 GGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred CCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcCCeEEecC
Confidence 4689999998877777766653 469999999 8999999999999986 23578999999999999999999
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then |
| >cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=304.13 Aligned_cols=189 Identities=32% Similarity=0.634 Sum_probs=162.2
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe-eCCCCcCCCCCCCCEEEE
Q 008647 335 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI-RPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 335 pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~-p~g~F~lp~~~~~plilI 413 (558)
+|+|||+|+|. ++.++|+|+.+ ..|.+|+||+++++| +.|.+.+ |.|.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~G------d~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPG------DTIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCc------CEEEEEeccCCCccCC-CCCCCEEEE
Confidence 59999999984 57899999853 259999999999999 8999986 56799886 346899999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHh
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMD 493 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~ 493 (558)
|+|||||||+||+++.. ..++++|+||+|+.+.|++|++||++|++.+.+++++.++||++ .++||++.+..
T Consensus 162 AgGtGIaP~~s~l~~~~-------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANA-------ARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhh-------ccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 99999999999998752 34689999999998448999999999999888888899999875 47899999887
Q ss_pred cHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 494 KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 494 ~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+++ .-+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~--------~~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP--------LSLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC--------cCHHHHHHCCCEEeecC
Confidence 77666666667899999999 8999999999999996543 22899999999999998
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F |
| >cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=300.97 Aligned_cols=212 Identities=33% Similarity=0.509 Sum_probs=179.7
Q ss_pred CCCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 318 ATPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
..+.+|||+.+.++. ..+|+|||||+|. ++.++|+|+.+... +.+.|.+|+||++ +++| +.|.+.+
T Consensus 30 ~~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~G------d~v~i~g 97 (245)
T cd06200 30 AQWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPIG------ASVALRL 97 (245)
T ss_pred CCccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCCC------CEEEEEe
Confidence 456789999998442 5789999999985 47899999876421 1124999999998 5899 8999999
Q ss_pred eCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 396 RPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 396 p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
|.| .|.++. ..+|+||||+|||||||+||++++.. . ..++++||||+|+.+.|++|.+||++|++.+.+++++
T Consensus 98 p~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~---~--~~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~ 171 (245)
T cd06200 98 RENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARAR---A--GRHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLD 171 (245)
T ss_pred cCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHh---c--cCCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEE
Confidence 865 888875 46899999999999999999999875 2 2367999999999844899999999999999988999
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCc-chHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCe
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK-GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRY 553 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 553 (558)
+++|+++..++||++.+.++.+.+.+++..++.||+||| + +|+++|.+.|.+++.+ +.+++|+++|||
T Consensus 172 ~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~ 240 (245)
T cd06200 172 LAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRY 240 (245)
T ss_pred EEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCe
Confidence 999998767899999998877777666666789999999 7 9999999999999963 348999999999
Q ss_pred EEeeC
Q 008647 554 LRDVW 558 (558)
Q Consensus 554 ~~dvw 558 (558)
++|+|
T Consensus 241 ~~d~~ 245 (245)
T cd06200 241 RRDVY 245 (245)
T ss_pred EEecC
Confidence 99999
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD |
| >cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=246.47 Aligned_cols=181 Identities=17% Similarity=0.306 Sum_probs=141.3
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEc
Q 008647 335 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVG 414 (558)
Q Consensus 335 pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa 414 (558)
.|+|||+|+|.. .+.++|+|++........+...|.+|+||+++++| +.|.|.+|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPG------DKVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCC------CEEEEECccccccccC-CCCcEEEEE
Confidence 499999999964 57899999875422110023369999999999999 8999999999998863 457999999
Q ss_pred cCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------Cccchh
Q 008647 415 PGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQ 488 (558)
Q Consensus 415 ~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yvq 488 (558)
+|||||||+||+++++.. +....+++|+||+|+.+ |++|.+||+++++.+.++++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~---~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKT---LKSKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhc---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999987652 21246899999999998 99999999999988888888888887541 346777
Q ss_pred hhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 489 HKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 489 ~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+.+.+.. +.... ..+..||+||| ++|++++.+.|.+.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~Gv 273 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDLGV 273 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHcCC
Confidence 7664432 10111 13568999999 8999999999987643
|
(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. |
| >cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=238.22 Aligned_cols=185 Identities=19% Similarity=0.295 Sum_probs=152.6
Q ss_pred CCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 318 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
....+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|.+|++|.+ +++| +.|.+.+|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAVP---------GGSFSDYVFEELKEN------GLVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEecC---------CCccHHHHHHhccCC------CEEEEecC
Confidence 45679999999867667999999999864 578999998652 4899999986 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++....+++||||+|||||||++|+++... ++ ...+++|+||+|+.+ |++|.+||+++++.+.+++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLA---QG-SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 99988876556899999999999999999999876 22 357899999999998 99999999999998888888889
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|++++ ..+|+++.+.+... -..+..+|+||| ++|++++.+.|.+.+
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp-~~m~~~~~~~l~~~G 213 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGS-PEMVYAARDDFVEKG 213 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhcc-----CccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 998643 34677665543211 014678999999 899999999997654
|
Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. |
| >cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-28 Score=234.77 Aligned_cols=188 Identities=28% Similarity=0.446 Sum_probs=150.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+++. .|.+|+||+++++| +.+.+.+
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G------~~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPG------DEVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCC------CEEEEEC
Confidence 45789999998664 57899999999864 478999999653 49999999999999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++....+++||||+|||||||++|++++... + ..++++|+||+|+.+ |++|.+||+++++.+.++++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD---K-PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhh---C-CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 9998866555678999999999999999999998762 1 467899999999999 9999999999999888888999
Q ss_pred EEecCCCCccchhhhhHhcHHHHHH-h-hhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGSQKEYVQHKMMDKAAQLWS-L-LSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~~k~yvq~~l~~~~~~l~~-~-~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++++++....+.++.+... ..+.. . ...+..+|+||| ++|++.+++.|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~g 214 (223)
T cd00322 161 ALSRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGP-PAMAKAVREALVSLG 214 (223)
T ss_pred EecCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9998765433333222211 11111 1 124689999999 899999999987754
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in |
| >PRK08051 fre FMN reductase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-28 Score=237.26 Aligned_cols=186 Identities=17% Similarity=0.214 Sum_probs=147.8
Q ss_pred CCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHh-hhcCCCCCCCCccEEEEEee
Q 008647 318 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L-~~l~~G~~~~~~~~v~v~~p 396 (558)
....+|||+.+.+|....|+|||+|.|.. ++.++|+|+.+. .|..|.++ .++++| +.|.+.+|
T Consensus 28 ~~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G------~~v~v~gP 91 (232)
T PRK08051 28 FSFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKD------GEIEVDIP 91 (232)
T ss_pred CccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCC------CEEEEEcC
Confidence 34678999999867777899999999864 578999998643 25555555 569999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+|+||||+||||||+++|++++.. .+ ...+++|+||+|+.+ |.+|.+||+++++.+.+++++.+
T Consensus 92 ~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 166 (232)
T PRK08051 92 HGDAWLREESERPLLLIAGGTGFSYARSILLTALA---QG-PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPV 166 (232)
T ss_pred CCceEccCCCCCcEEEEecCcCcchHHHHHHHHHH---hC-CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEE
Confidence 99888765556899999999999999999999876 22 457899999999999 99999999999998888889998
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHH-HHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL-HTIVQ 530 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L-~~i~~ 530 (558)
+|++++ .++++++.+.+.... ..+..||+||| ++|+++|.+.| .+.+.
T Consensus 167 ~~~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp-~~m~~~v~~~l~~~~G~ 219 (232)
T PRK08051 167 VEQPEEGWQGKTGTVLTAVMQDFGS-----LAEYDIYIAGR-FEMAKIARELFCRERGA 219 (232)
T ss_pred eCCCCCCcccceeeehHHHHhhccC-----cccCEEEEECC-HHHHHHHHHHHHHHcCC
Confidence 887653 356666655332100 13468999999 89999999988 66543
|
|
| >cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=236.60 Aligned_cols=186 Identities=24% Similarity=0.331 Sum_probs=150.7
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|++++ .|.+|+||+ .+++| +.|.|.+|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLVP---------GGIATTYVHKQLKEG------DELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEECC---------CCcchhhHhhcCCCC------CEEEEECC
Confidence 467999999986655 5899999999864 578999998653 599999997 59999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+++||||+|||||||++++++... ++ ...+++|+||+|+.+ |++|.++|+++++...+++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLE---RG-DTRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 99988875555899999999999999999999875 22 346899999999999 99999999999988777888889
Q ss_pred EecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+||+.. .++++++.+.+.... ..++..+|+||| ++|++++.+.|.+.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp-~~m~~~~~~~L~~~Gv 228 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGP-PPMIDACIKTLMQGRL 228 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 998642 245666654432110 013579999999 8999999999987543
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. |
| >PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=249.07 Aligned_cols=184 Identities=18% Similarity=0.269 Sum_probs=151.1
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~ 397 (558)
.+.+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.+.+|.
T Consensus 131 ~~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~l~~~l~~G------~~v~v~gP~ 194 (339)
T PRK07609 131 QYLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHMP---------GGVFTDHVFGALKER------DILRIEGPL 194 (339)
T ss_pred ccCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEecC---------CCccHHHHHHhccCC------CEEEEEcCc
Confidence 4578999999867667899999999864 578999998653 5999999975 9999 899999999
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
|.|.++....+|+||||+|||||||+||++++.. .+ ..++++||||+|+.+ |+++.++|++|+++..+++++.++
T Consensus 195 G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~---~~-~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~ 269 (339)
T PRK07609 195 GTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRA---KG-IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVV 269 (339)
T ss_pred eeEEecCCCCCCEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEe
Confidence 9999876566899999999999999999999876 22 456899999999999 999999999999888788899999
Q ss_pred ecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 478 SREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 478 Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
||+.. .++++++.+.+.... ..+..+|+||| ++|++++.+.|.+.+
T Consensus 270 s~~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp-~~m~~~~~~~l~~~G 321 (339)
T PRK07609 270 SDALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGS-PVMVYAARDDFVAAG 321 (339)
T ss_pred cCCCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 98421 356777665432211 13579999999 899999999887644
|
|
| >PRK10926 ferredoxin-NADP reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=236.21 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=144.8
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.++ . ...|+|||+|+|. .+.++|+|+.++ .|.+|+||+++++| +.|.+.+
T Consensus 30 ~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~g 92 (248)
T PRK10926 30 PFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVP---------EGKLSPRLAALKPG------DEVQVVS 92 (248)
T ss_pred CCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeC---------CCCcChHHHhCCCC------CEEEEec
Confidence 4578999888643 2 2469999999985 358999998663 59999999999999 8999999
Q ss_pred eC-CCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CccE
Q 008647 396 RP-SNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 472 (558)
Q Consensus 396 p~-g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~-~~~~ 472 (558)
|. |.|.++.. ..+|+||||+|||||||+||++++.. .+ ..++++|+||+|+.+ |++|++||++|++.. ..++
T Consensus 93 p~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~ 167 (248)
T PRK10926 93 EAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKD---LE-RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLR 167 (248)
T ss_pred CCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHh---hC-CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEE
Confidence 87 46666643 34799999999999999999998764 22 457899999999998 999999999998875 4678
Q ss_pred EEEEEecCCC---CccchhhhhHhc-HHHHHH-hh-hCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 473 LILAFSREGS---QKEYVQHKMMDK-AAQLWS-LL-SKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 473 ~~~a~Sr~~~---~k~yvq~~l~~~-~~~l~~-~~-~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
++.++||++. .++++++.+.+. ...... .+ .+++.+|+||| ++|++++.+.|.+.
T Consensus 168 v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 168 IQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 9999998653 246776655332 111111 11 24578999999 89999999888754
|
|
| >cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=234.44 Aligned_cols=190 Identities=19% Similarity=0.256 Sum_probs=151.9
Q ss_pred CCChhHHHHhhCCCC----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+++. .|.+|+||+++++| +.|.+.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~G------d~v~v~ 86 (241)
T cd06195 24 RFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPG------DTIYVG 86 (241)
T ss_pred ccCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCC------CEEEEC
Confidence 457899999875543 5699999999853 78999998653 59999999999999 899999
Q ss_pred -eeCCCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCcc
Q 008647 395 -IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVIS 471 (558)
Q Consensus 395 -~p~g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~-~~~~ 471 (558)
+|.|.|.++.. ..+++||||+|||||||++|+++.... + ..++++|+||+|+.+ |++|.+||+++++. ..++
T Consensus 87 ~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 161 (241)
T cd06195 87 KKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW---E-RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKF 161 (241)
T ss_pred cCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh---C-CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCE
Confidence 99999988754 457999999999999999999998752 2 457899999999999 99999999999887 5677
Q ss_pred EEEEEEecCCCC---ccchhhhhHh-cHHHHHHh--hhCCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 472 ELILAFSREGSQ---KEYVQHKMMD-KAAQLWSL--LSKEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 472 ~~~~a~Sr~~~~---k~yvq~~l~~-~~~~l~~~--~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
+++.++|+++.. ++|+++.+.. ........ ...+..||+||| ++|++++.+.|.+.+..
T Consensus 162 ~~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~~ 226 (241)
T cd06195 162 RYVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGFS 226 (241)
T ss_pred EEEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCCC
Confidence 888889987653 5677776542 11111111 124579999999 89999999999876643
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. |
| >cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=233.76 Aligned_cols=185 Identities=24% Similarity=0.321 Sum_probs=149.5
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.|.+|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~~---------~G~~s~~l~~~~~~G------d~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLLP---------GGAFSTYLETRAKVG------QRLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEcC---------CCccchhhhhCcCCC------CEEEEecC
Confidence 46789999987564 35799999999864 578999998642 4999999998 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++....+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.++|+++++.+.+++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAE---WG-EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 99998876556799999999999999999999775 22 347899999999999 99999999999998888889999
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. ..+++++.+.+.... ......+|+||| ++|++++++.|.+.+
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp-~~m~~~~~~~l~~~G 224 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGP-PGMVDAAFAAAREAG 224 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 997543 345665544332111 113568999999 899999999887654
|
This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. |
| >cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-27 Score=231.95 Aligned_cols=187 Identities=20% Similarity=0.171 Sum_probs=150.3
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.|.|.+|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~~---------~G~~s~~l~~~~~~g------~~v~v~gP 86 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRKP---------GGAASNALFDNLEPG------DELELDGP 86 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEcC---------CCcchHHHhhcCCCC------CEEEEECC
Confidence 467899999986776 7899999999865 578999998542 5899999987 7999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+++||||+|||||||++|++++.... .....+++|+||+|+.+ |++|.+||+++++.+..++++++
T Consensus 87 ~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 163 (232)
T cd06190 87 YGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPA 163 (232)
T ss_pred cccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEE
Confidence 9988776555679999999999999999999987521 01357899999999999 99999999999998888888888
Q ss_pred EecCCC--------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~--------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. .++++++.+.+.... ...+..||+||| ++|++++.+.|.+..
T Consensus 164 ~s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp-~~m~~~v~~~l~~~g 219 (232)
T cd06190 164 VSDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGP-PPMVDAVQRMLMIEG 219 (232)
T ss_pred eCCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECC-HHHHHHHHHHHHHhC
Confidence 887643 134566554332111 123679999999 899999999887753
|
Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. |
| >PRK11872 antC anthranilate dioxygenase reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-27 Score=245.37 Aligned_cols=183 Identities=21% Similarity=0.313 Sum_probs=150.8
Q ss_pred CCChhHHHHhhCCCCC-CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHLQ-PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~-pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|... .|+|||+|+|.. .+.++|+|+++. .|.+|+||++ +++| +.|.|.+|
T Consensus 136 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~L~~~l~~G------~~v~i~gP 199 (340)
T PRK11872 136 DFLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLLP---------DGVMSNYLRERCQVG------DEILFEAP 199 (340)
T ss_pred CcCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEECC---------CCcchhhHhhCCCCC------CEEEEEcC
Confidence 4678999998766543 799999999864 578999999653 5899999975 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++. ..+|+||||+|||||||+||++++.. .+ ..++++||||+|+.+ |++|.++|++|++...+++++.+
T Consensus 200 ~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~ 273 (340)
T PRK11872 200 LGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAE---QG-CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPV 273 (340)
T ss_pred cceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHH---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEE
Confidence 99998864 35899999999999999999999875 22 346899999999999 99999999999998888899999
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+|+++. .++++++.+.+.. +. ....||+||| ++|++++.+.|.+.+.
T Consensus 274 ~s~~~~~~~g~~g~v~~~l~~~~------l~~~~~~vy~CGp-~~mv~~~~~~L~~~Gv 325 (340)
T PRK11872 274 VSKASADWQGKRGYIHEHFDKAQ------LRDQAFDMYLCGP-PPMVEAVKQWLDEQAL 325 (340)
T ss_pred EeCCCCcCCCceeeccHHHHHhh------cCcCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 887543 3467776654321 22 3468999999 8999999999977653
|
|
| >cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-27 Score=230.48 Aligned_cols=185 Identities=20% Similarity=0.277 Sum_probs=151.0
Q ss_pred CCChhHHHHhhCCCCC--CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHLQ--PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~--pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+|... .|+|||+|.|.. .+.++|+|+... .|.+|+||++ +++| +.|.|.+
T Consensus 23 ~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~g 86 (224)
T cd06187 23 PFWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAVP---------GGRVSNALHDELKVG------DRVRLSG 86 (224)
T ss_pred CcCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeCC---------CCcchHHHhhcCccC------CEEEEeC
Confidence 4568999999866543 799999999865 478999998542 5999999998 9999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++.+..+++||||+|||||||+||++++.. ++ ...+++|+|++|+.+ |++|.++|+++++...+++++.
T Consensus 87 P~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~---~~-~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 161 (224)
T cd06187 87 PYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALR---RG-EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVP 161 (224)
T ss_pred CccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEE
Confidence 999988875546799999999999999999999875 22 457899999999999 9999999999998888888888
Q ss_pred EEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 476 AFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 476 a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++++++. .++|+++.+.+... -..++.||+||| ++|++++.+.|.+.+.
T Consensus 162 ~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp-~~~~~~v~~~l~~~G~ 214 (224)
T cd06187 162 VVSHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGP-PAMVDATVDALLARGA 214 (224)
T ss_pred EeCCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 8887643 35677776644221 014679999999 8999999999876543
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-27 Score=249.45 Aligned_cols=181 Identities=17% Similarity=0.300 Sum_probs=144.1
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilI 413 (558)
..|+|||+|.|.. .+.++|+|+++.++...++...|.+|+||+++++| +.|.|.+|.|.|.++ +..+|+|||
T Consensus 209 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~f~~~-~~~~~ivlI 280 (409)
T PRK05464 209 VIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 280 (409)
T ss_pred eeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCC------CEEEEEccccCcEec-CCCceEEEE
Confidence 5799999999965 57899999986544333445579999999999999 899999999999876 356899999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------Cccch
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYV 487 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yv 487 (558)
|+|||||||+||+++.+.. .....+++||||+|+.+ |++|.++|+++++...++++++++|++.. .++++
T Consensus 281 AgGtGIaP~~sml~~~l~~---~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 281 GGGAGMAPMRSHIFDQLKR---LKSKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred EeccChhHHHHHHHHHHhC---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCcccee
Confidence 9999999999999987652 11346899999999999 99999999999988888889999987532 34677
Q ss_pred hhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 488 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 488 q~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.+.+.. +.+.. ..+..||+||| ++|++++.+.|.+..
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~G 396 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDLG 396 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 76654321 11111 13579999999 899999999987654
|
|
| >PRK10684 HCP oxidoreductase, NADH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-27 Score=242.05 Aligned_cols=187 Identities=14% Similarity=0.251 Sum_probs=148.1
Q ss_pred CCChhHHHHhhCCCC--CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~--~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.++.. ..|+|||+|.|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.+.+
T Consensus 36 ~f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~g 99 (332)
T PRK10684 36 PYRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRID---------DGVGSQWLTRDVKRG------DYLWLSD 99 (332)
T ss_pred CcCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEeC
Confidence 457899999875532 4699999999864 468999999653 599999997 59999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++....+++||||+|||||||+||+++.+. .+ ...+++|+||+|+.+ |++|.+||+++++....+++++
T Consensus 100 P~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~---~~-~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 174 (332)
T PRK10684 100 AMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLK---NR-PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTL 174 (332)
T ss_pred CccccccCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEE
Confidence 999999876556799999999999999999998765 22 457899999999999 9999999999998877767777
Q ss_pred EEecCCCCccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 476 AFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 476 a~Sr~~~~k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
..+++. .+++.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.+.
T Consensus 175 ~~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~Gv 227 (332)
T PRK10684 175 VAENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKALGV 227 (332)
T ss_pred EeccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 766543 345555555431 1222222 2578999999 8999999999877643
|
|
| >PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=238.46 Aligned_cols=183 Identities=21% Similarity=0.229 Sum_probs=145.2
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
...+|||+.+.+|....|+|||+|+|.. ++.++|+|+. .|.+|.||+++++| +.|.+.+|.|
T Consensus 37 ~~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G 98 (289)
T PRK08345 37 TFKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEG------DIVGVRGPYG 98 (289)
T ss_pred CcCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCC------CEEEEeCCCC
Confidence 4578999999766656799999999864 5789999983 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++....+|+||||+|||||||+||+++++.. +....+++|+||+|+.+ |++|++||++|++...+++++.++
T Consensus 99 ~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~---~~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~ 174 (289)
T PRK08345 99 NGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDN---RWKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSV 174 (289)
T ss_pred CCCCcccccCceEEEEecccchhHHHHHHHHHHhc---CCCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEe
Confidence 6 766544457999999999999999999988752 21347899999999998 999999999998888888899999
Q ss_pred ecCCCCc---------------cchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREGSQK---------------EYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~~~k---------------~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
|+++... +++.+.+.+. .. ..+..+|+||| ++|++++.+.|.+.+.
T Consensus 175 s~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 175 TRDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINRGY 236 (289)
T ss_pred cCCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHcCC
Confidence 9864321 2222222111 11 13568999999 8999999999877543
|
|
| >cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=229.76 Aligned_cols=182 Identities=25% Similarity=0.349 Sum_probs=149.4
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
...+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.|.|.+|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLLP---------GGAMSSYLRDRAQPG------DRLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEcC---------CCcchhhHHhccCCC------CEEEEECC
Confidence 457899999975654 4799999999864 78999998642 5999999999 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.. .++++|||+|||||||++++++... .+ ..++++|+||+|+.+ |++|.++|+++.+...+++++++
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAE---DG-SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHh---cC-CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 998877643 4799999999999999999999875 22 457899999999999 99999999999988888889999
Q ss_pred EecCCC---CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~---~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. .++|+++.+.+.. +...+..+|+||| ++|++++++.|.+.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~~G 216 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDEQG 216 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 998654 3457776654421 0123568999999 899999999998654
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. |
| >cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-27 Score=229.94 Aligned_cols=185 Identities=21% Similarity=0.329 Sum_probs=149.4
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.+.+|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKYP---------GGLFSSFLDDGLAVG------DPVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCchhhHHhhcCCCC------CEEEEEcC
Confidence 457899999975654 5899999999865 578999998642 5899999997 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++....+++||||+|||||||++|++++.. .+ ..++++|+||+|+.+ |++|.++|+++++...+++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAA---SG-SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHh---cC-CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 99988775556799999999999999999999876 22 456899999999998 99999999999988777888888
Q ss_pred EecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+|++.. ..+++++.+.+.... ..+..||+||| +.|++++.+.|.+.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~~CGp-~~~~~~v~~~l~~~G~ 221 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNEAT-----LAGCDVYLCGP-PPMIDAALPVLEMSGV 221 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhccC-----ccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 998542 235665544322111 03678999999 8999999999887553
|
These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. |
| >TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=245.05 Aligned_cols=181 Identities=18% Similarity=0.315 Sum_probs=142.0
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilI 413 (558)
..|+|||+|+|.. .+.++|+|+++.+.....+...|.+|+||+++++| +.|.+.+|.|.|.+.. ..+|+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPG------DKVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCc------CEEEEEeccCCCeecC-CCCCEEEE
Confidence 4699999999965 57899999976432211223469999999999999 8999999999998763 46799999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------Cccch
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYV 487 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yv 487 (558)
|+|||||||+||+++.+.. .....+++||||+|+++ |++|.+||+++++.+.++++++++|+++. .++++
T Consensus 277 AgGtGIaP~lsmi~~~l~~---~~~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKR---LKSKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhc---CCCCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 9999999999999987652 12456899999999999 99999999999988888889999887532 24567
Q ss_pred hhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 488 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 488 q~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.+.+.. +.+.. ..++.||+||| ++|++++.+.|.+..
T Consensus 353 ~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~G 392 (405)
T TIGR01941 353 HNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDLG 392 (405)
T ss_pred CHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 66554321 11111 13578999999 899999999987654
|
This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. |
| >cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-27 Score=229.25 Aligned_cols=187 Identities=21% Similarity=0.364 Sum_probs=144.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++. ..+|+|||+|.|. .+.++|+|+.+. .|.+|+||+ ++++| +.+.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~---------~G~~s~~l~~~~~~G------d~v~i~ 89 (231)
T cd06191 27 GFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVP---------GGRVSNYLREHIQPG------MTVEVM 89 (231)
T ss_pred CCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECC---------CCccchHHHhcCCCC------CEEEEe
Confidence 35789999886432 2479999999986 578999998652 489999998 59999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.....++||||+||||||++||+++.... ....+++|+||+|+.+ |++|.+||+++++...+++++
T Consensus 90 gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 164 (231)
T cd06191 90 GPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQT----APESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLL 164 (231)
T ss_pred CCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhc----CCCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEE
Confidence 99999988765567999999999999999999988752 1457899999999999 999999999999887788899
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHH-hhh--CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWS-LLS--KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~-~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.++||++....+........ +.+.+ ++. .++.+|+||| ++|++++++.|.+.+
T Consensus 165 ~~~s~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~G 220 (231)
T cd06191 165 CIFTRETLDSDLLHGRIDGE-QSLGAALIPDRLEREAFICGP-AGMMDAVETALKELG 220 (231)
T ss_pred EEECCCCCCccccCCccccc-HHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 99998653222211111000 11211 222 2479999999 899999999887644
|
FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in |
| >PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=245.72 Aligned_cols=186 Identities=16% Similarity=0.241 Sum_probs=146.9
Q ss_pred CCChhHHHHhhCC--C--C-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP--H--L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~--~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+.++ . . .+|+|||+|+|. ++.++|+|+.+. .|.+|+||++ +++| +.|.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~---------~G~~S~~L~~~l~~G------d~v~ 246 (399)
T PRK13289 184 DFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREA---------GGKVSNYLHDHVNVG------DVLE 246 (399)
T ss_pred CCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECC---------CCeehHHHhhcCCCC------CEEE
Confidence 4578999999754 1 1 249999999985 468999988542 5999999987 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++....+|+||||+|||||||+||++++... + ...+++||||+|+.+ |++|++||+++++.+.+++
T Consensus 247 v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~ 321 (399)
T PRK13289 247 LAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQ---Q-PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLK 321 (399)
T ss_pred EEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcE
Confidence 9999999998866678999999999999999999998752 2 457999999999999 9999999999998887888
Q ss_pred EEEEEecCCCC----ccchh-hhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ----KEYVQ-HKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~----k~yvq-~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.++|++... ..|.+ .++. .+.+.+.+. .+..+|+||| ++|++++.+.|.+.+
T Consensus 322 ~~~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 381 (399)
T PRK13289 322 AHTWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLELG 381 (399)
T ss_pred EEEEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 99999985431 11111 2222 122333332 4689999999 899999999987654
|
|
| >cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=224.06 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=146.5
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~ 397 (558)
...+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.|.|.+|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~gP~ 86 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRKP---------NGAFSGWLGEEARPG------HALRLQGPF 86 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEecc---------CCccchHHHhccCCC------CEEEEecCc
Confidence 4578999999867777899999999865 378999998542 4999999998 7999 899999999
Q ss_pred CCCcCCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 398 SNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 398 g~F~lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
|.|.+.. ...+++||||+|||||||++|++++.. .+ ..++++|+||+|+.+ |++|.+||+++++....++++.+
T Consensus 87 G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 87 GQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALR---QG-HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHh---cC-CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEE
Confidence 9876653 445799999999999999999999875 22 457899999999999 99999999999987777788888
Q ss_pred EecCCCCccc-hhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGSQKEY-VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~~k~y-vq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
.++++..... ..+.+.+ .+. ....+..+|+||| ++|++++++.|.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~Gv 211 (222)
T cd06194 162 VSEGSQGDPRVRAGRIAA---HLP-PLTRDDVVYLCGA-PSMVNAVRRRAFLAGA 211 (222)
T ss_pred EccCCCCCcccccchhhh---hhc-cccCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 8886543211 1111111 111 1234689999999 8999999999877543
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e |
| >PRK05713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=238.38 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=141.8
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.++....|+|||+|.|.. .+.++|+|+.+. .|.+|.||.++++| +.|.+.+|.|
T Consensus 118 ~~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~~---------~G~~s~~l~~l~~G------d~v~l~~p~g 181 (312)
T PRK05713 118 RYRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCSR---------PGAFCDAARQLQVG------DLLRLGELRG 181 (312)
T ss_pred CcCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEcC---------CCccchhhhcCCCC------CEEEEccCCC
Confidence 4578999998756656899999999865 578999998653 59999999999999 8999999997
Q ss_pred -CCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 399 -NFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 399 -~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.++.+ ..+|+||||||||||||+||++++.. .+ ...+++|+||+|+.+ |++|.+||++|++...++++..+
T Consensus 182 g~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 256 (312)
T PRK05713 182 GALHYDPDWQERPLWLLAAGTGLAPLWGILREALR---QG-HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELV 256 (312)
T ss_pred CceEecCCCCCCcEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEE
Confidence 5666543 45799999999999999999998775 22 357899999999999 99999999999988777778776
Q ss_pred EecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.++ ++++.+.+.. ....+..+|+||| ++|++++.+.|.+.+
T Consensus 257 ~~~------~~~~~l~~~~-----~~~~~~~vyiCGp-~~mv~~~~~~L~~~G 297 (312)
T PRK05713 257 TAA------QLPAALAELR-----LVSRQTMALLCGS-PASVERFARRLYLAG 297 (312)
T ss_pred ECc------chhhhhhhcc-----CCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 653 2333322110 0123578999999 999999999997654
|
|
| >cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-26 Score=223.82 Aligned_cols=181 Identities=23% Similarity=0.330 Sum_probs=145.2
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
...+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +.|.+.+|
T Consensus 27 ~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 90 (227)
T cd06213 27 AYKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKVP---------GGAFSGWLFGADRTG------ERLTVRGP 90 (227)
T ss_pred CcCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCcchHHHHhcCCCC------CEEEEeCC
Confidence 356899999875554 4899999999864 578999998542 5899999965 8999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCccEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISELIL 475 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~-~~~~~~~~ 475 (558)
.|.|.++. ..+++||||+|||||||++|++++.. ++ ...+++++||+|+.+ |++|.++|+++++. ..+++++.
T Consensus 91 ~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 164 (227)
T cd06213 91 FGDFWLRP-GDAPILCIAGGSGLAPILAILEQARA---AG-TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIP 164 (227)
T ss_pred CcceEeCC-CCCcEEEEecccchhHHHHHHHHHHh---cC-CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEE
Confidence 99998864 34799999999999999999999875 22 456799999999999 99999999999875 45677888
Q ss_pred EEecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++|+++. ..+++++.+.+. +..+..+|+||| +.|++++.+.|.+.+
T Consensus 165 ~~s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~G 216 (227)
T cd06213 165 VLSEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRALG 216 (227)
T ss_pred EecCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 8887642 224565544321 235689999999 899999999887654
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=224.93 Aligned_cols=184 Identities=22% Similarity=0.280 Sum_probs=147.7
Q ss_pred CCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeC
Q 008647 318 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~ 397 (558)
....+|||+.+.+|....|+|||+|+|.. .+.++|+|+. .|.+|+||+++++| +.+.+.+|.
T Consensus 26 ~~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G------~~v~i~gP~ 87 (253)
T cd06221 26 FTFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPG------DTVGLRGPF 87 (253)
T ss_pred CCcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCC------CEEEEECCc
Confidence 45678999999867666799999999964 5789999983 38899999999999 899999999
Q ss_pred CC-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 398 SN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 398 g~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
|. |.++....+++||||+||||||+++|+++++.. +...++++|+|++|+.+ |++|+++|+++++. .++++.++
T Consensus 88 G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~---~~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~ 162 (253)
T cd06221 88 GNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDN---REDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILT 162 (253)
T ss_pred CCCcccccccCCeEEEEccccchhHHHHHHHHHHhc---cccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEE
Confidence 96 666543468999999999999999999998862 22357899999999999 99999999999987 66778888
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+|++.. ..+++++.+.+... ...+..||+||| +.|++++.+.|.+...
T Consensus 163 ~s~~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp-~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 163 VDRAEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGP-PIMMRFVAKELLKLGV 214 (253)
T ss_pred eCCCCCCccCCccccchhHHhcCC-----CcCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 887643 24566654433210 114679999999 8999999999977543
|
Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. |
| >cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-26 Score=222.18 Aligned_cols=187 Identities=21% Similarity=0.305 Sum_probs=144.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+|. ...|+|||+|.|.. .+.++|+|++.. .|.+|.||+ ++++| +.+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~~~~G------~~v~i~ 90 (231)
T cd06215 27 AYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDNLKVG------DELWAS 90 (231)
T ss_pred CcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEE
Confidence 45789999887552 23699999999864 567999998653 489999997 59999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.....++||||+|||||||++|+++... .+ ...+++|||++|+.+ |++|.++|++++++...++++
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 165 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLD---TR-PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLH 165 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEE
Confidence 9999998875446899999999999999999998875 22 456899999999999 999999999999877777888
Q ss_pred EEEecCCCC-ccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 475 LAFSREGSQ-KEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~~~-k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.++++.. ..+.++++.. +.+.+.+. .+..||+||| ++|++++.+.|.+..
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~g 220 (231)
T cd06215 166 LILEQPAPGAWGGYRGRLNA--ELLALLVPDLKERTVFVCGP-AGFMKAVKSLLAELG 220 (231)
T ss_pred EEEccCCCCcccccCCcCCH--HHHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 888886542 2222233321 11222222 2468999999 899999999987654
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr |
| >COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=221.78 Aligned_cols=183 Identities=19% Similarity=0.302 Sum_probs=142.1
Q ss_pred CCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++.- ..|.|||+|+|.. ++.+.|+|++.. .|.+|+||+ ++++| |+|.++
T Consensus 34 ~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~---------~G~~S~~Lh~~lk~G------d~l~v~ 97 (266)
T COG1018 34 DFEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRED---------GGGGSNWLHDHLKVG------DTLEVS 97 (266)
T ss_pred ccCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeC---------CCcccHHHHhcCCCC------CEEEEe
Confidence 367899999976654 6899999999976 468999998653 499999999 69999 999999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
.|.|.|.++..+..+++|||+|||||||+||++.... .+ . .++.|+|++|+.+ ++.|++| +.+++..+.....
T Consensus 98 ~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~---~~-~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~ 170 (266)
T COG1018 98 APAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLD---RG-P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLL 170 (266)
T ss_pred cCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHH---hC-C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeE
Confidence 9999999987666799999999999999999999876 22 4 8899999999999 9999999 8888876653333
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhhhCC-CEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~-~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
..+.+.....++.. ...+.....+. ..+|+||| .+|+++|+..|.++...
T Consensus 171 ~~~~~~~~~~g~~~------~~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~~ 221 (266)
T COG1018 171 GLYTERGKLQGRID------VSRLLSAAPDGGREVYLCGP-GPFMQAVRLALEALGVP 221 (266)
T ss_pred EEEEecCCcccccc------HHHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 33332111122221 11111112223 89999999 78999999999877654
|
|
| >PRK05723 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=204.85 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=91.9
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
++.+||++||||+|+||+|+..||++|++... ..|++++|||||||||+| ++||.++++++++|+++||+||+++++
T Consensus 48 ~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~--~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~ 125 (151)
T PRK05723 48 PEALLAVTSTTGMGELPDNLMPLYSAIRDQLP--AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLR 125 (151)
T ss_pred CCeEEEEECCCCCCCCchhHHHHHHHHHhcCc--cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEE
Confidence 37899999999999999999999999986432 249999999999999999 899999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELD 104 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~ 104 (558)
+|++. +++++|++|++++|++|.
T Consensus 126 ~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 126 LDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred eecCCCCChHHHHHHHHHHHHHHhc
Confidence 99985 689999999999998774
|
|
| >cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=223.62 Aligned_cols=182 Identities=20% Similarity=0.307 Sum_probs=145.5
Q ss_pred CCChhHHHHhhCC--C---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
...+|||+.+.++ . ...|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~ 98 (247)
T cd06184 36 PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREP---------GGLVSNYLHDNVKVG------DVLE 98 (247)
T ss_pred CCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEE
Confidence 4578999988753 2 35799999999853 47888887432 4999999998 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
|.+|.|.|.++.+..+++||||+|||||||++|++++... + ...+++|+||+|+++ +.+|.++|+++++.+.+++
T Consensus 99 i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~---~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~ 173 (247)
T cd06184 99 VSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE---G-PGRPVTFIHAARNSA-VHAFRDELEELAARLPNLK 173 (247)
T ss_pred EEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc---C-CCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeE
Confidence 9999999998764567999999999999999999998752 1 467899999999999 8999999999998877788
Q ss_pred EEEEEecCCCC--------ccchhhhhHhcHHHHHH-hhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ--------KEYVQHKMMDKAAQLWS-LLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~--------k~yvq~~l~~~~~~l~~-~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++++|++... .++++. +.+.+ ....+..||+||| +.|++++++.|.+.+
T Consensus 174 ~~~~~s~~~~~~~~~~~~~~g~~~~------~~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~G 232 (247)
T cd06184 174 LHVFYSEPEAGDREEDYDHAGRIDL------ALLRELLLPADADFYLCGP-VPFMQAVREGLKALG 232 (247)
T ss_pred EEEEECCCCcccccccccccCccCH------HHHhhccCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 99999986432 123322 12222 1235789999999 899999999997654
|
Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. |
| >cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=222.59 Aligned_cols=185 Identities=22% Similarity=0.361 Sum_probs=146.9
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+| . ..+|+|||+|.|....+.++|+|+.+. +|.+|.||++ +++| +.|.+.
T Consensus 45 ~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i~ 109 (243)
T cd06216 45 GHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQP---------DGLVSNWLVNHLAPG------DVVELS 109 (243)
T ss_pred CcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEE
Confidence 3578999998754 2 347999999998512578999998642 4899999996 8999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.+..+++||||+||||||++|++++... .+ ...+++|+||+|+.+ |.+|.++|+++++++.+++++
T Consensus 110 gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 184 (243)
T cd06216 110 QPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLA---RG-PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLH 184 (243)
T ss_pred CCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHh---cC-CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEE
Confidence 9999999886656899999999999999999999875 22 457899999999998 999999999999877777888
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
+.+|++ ...+++.... +.+... .+..+|+||| +.|++++.+.|.+.+..
T Consensus 185 ~~~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 185 LLYTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGP-PGFLDAAEELLEAAGLA 235 (243)
T ss_pred EEEcCC-ccCCCCCHHH------HHHhccCcccCeEEEECC-HHHHHHHHHHHHHCCCc
Confidence 888876 2344443211 112222 3579999999 89999999999876543
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for |
| >cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-25 Score=218.89 Aligned_cols=180 Identities=19% Similarity=0.247 Sum_probs=139.8
Q ss_pred CCCChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEE
Q 008647 318 ATPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 393 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v 393 (558)
....+|||+.+.++. ...|+|||+|.|. .+.++|+|+++.. .|.+|.+|+++++| +.+.+
T Consensus 26 ~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~~--------~g~~s~~l~~l~~G------~~v~i 89 (218)
T cd06196 26 YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYPD--------HDGVTEQLGRLQPG------DTLLI 89 (218)
T ss_pred CCCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcCC--------CCcHhHHHHhCCCC------CEEEE
Confidence 346899999987542 3579999999985 3789999986421 37789999999999 89999
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
.+|.|.|.++ .|+||||+|||||||+||++++.. .+ ...+++|+||+|+.+ |++|.+||++|.. +++
T Consensus 90 ~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~ 156 (218)
T cd06196 90 EDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAA---KG-KLEGNTLIFANKTEK-DIILKDELEKMLG----LKF 156 (218)
T ss_pred ECCccceEec----CceEEEecCCCcChHHHHHHHHHh---CC-CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceE
Confidence 9999998753 589999999999999999999875 22 456799999999998 9999999999853 357
Q ss_pred EEEEecCCCCccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 474 ILAFSREGSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 474 ~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+.++|++.. ..|.++++.+ +.+.+++. .++.||+||| ++|++++.+.|.+.+.
T Consensus 157 ~~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~ 210 (218)
T cd06196 157 INVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKELGV 210 (218)
T ss_pred EEEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 778888653 2344444432 12223332 3579999999 8999999998877543
|
The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=232.29 Aligned_cols=189 Identities=20% Similarity=0.327 Sum_probs=144.8
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++. ...|+|||+|.|. ++.++|+|+.+. .|.+|+||+ ++++| +.|.+.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~G------d~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPG------DTLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 45789999987532 2469999999984 478999998653 489999997 59999 899999
Q ss_pred eeCCCCcCCCCC--CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cc
Q 008647 395 IRPSNFKLPANP--SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-IS 471 (558)
Q Consensus 395 ~p~g~F~lp~~~--~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~ 471 (558)
+|.|.|.++... .+++||||+|||||||+||+++++.. + ...+++|+||+|+.+ |++|.+||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E-PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 999999876442 37999999999999999999988752 2 457899999999999 9999999999987765 47
Q ss_pred EEEEEEecCCCCccchhhhhHh-cHHHH-HHhh--hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 472 ELILAFSREGSQKEYVQHKMMD-KAAQL-WSLL--SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 472 ~~~~a~Sr~~~~k~yvq~~l~~-~~~~l-~~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+++.++|++.....+...++.. ....+ .++. .....+|+||| ++|++++++.|.+.+.
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLGV 231 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 7888899865432222233211 11111 1121 13468999999 8999999999987654
|
Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. |
| >PTZ00274 cytochrome b5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=228.10 Aligned_cols=182 Identities=12% Similarity=0.140 Sum_probs=138.3
Q ss_pred CCChhHHHHhhCC-C-----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP-H-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p-~-----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+..+ . ...|+|||+|.|.. .+.++|+|+++. .|.+|+||+++++| +.|.
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~---------~G~~S~~L~~lk~G------d~v~ 144 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKK---------DGLMTNHLFGMHVG------DKLL 144 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcC---------CCcccHHHhcCCCC------CEEE
Confidence 4578999886533 1 24699999999965 578999999653 59999999999999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc--CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV- 469 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~- 469 (558)
+.+|.+.|.++.+..+++||||||||||||+||+++.+..... +....+++|+||+|+.+ |++|++||+++++...
T Consensus 145 v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~ 223 (325)
T PTZ00274 145 FRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSN 223 (325)
T ss_pred EeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCC
Confidence 9999777766544457999999999999999999988762110 11235899999999999 9999999999998765
Q ss_pred ccEEEEEEecCCC------CccchhhhhHhcHHHHHHhhh----CCCEEEEeCCCcchHHHHHHH
Q 008647 470 ISELILAFSREGS------QKEYVQHKMMDKAAQLWSLLS----KEGYLYVCGDAKGMARDVHRT 524 (558)
Q Consensus 470 ~~~~~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~~~----~~~~iyvCGp~~~M~~~v~~~ 524 (558)
+++++.++|++.. ..++|.+.+. .+.+. ....+|+||| ++|+++|...
T Consensus 224 ~f~v~~~ls~~~~~~~w~g~~G~V~~~ll------~~~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 224 RFKVYYTIDQAVEPDKWNHFLGYVTKEMV------RRTMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred cEEEEEEeCCCCcccCCCCCCCccCHHHH------HHhcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5788888886422 1244443321 11121 1257999999 9999999665
|
|
| >cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=216.35 Aligned_cols=178 Identities=21% Similarity=0.308 Sum_probs=140.5
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+. .|.+|.+|. ++++| +.|.+.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G------~~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPG------TRVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCC------CEEEEE
Confidence 45789999987553 56899999999864 4789999984 388999999 79999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.. .+++||||+||||||+++|++++.. .+ ..++++|+|++|+.+ |++|.++|+++.+.+ +++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAA---RG-DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHh---cC-CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 99999988765 6899999999999999999998875 22 357899999999999 999999999998877 55677
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhh--hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++.++.+. .......+ .... ..+..||+||| ++|++++++.|.+...
T Consensus 157 ~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp-~~m~~~v~~~l~~~Gv 205 (216)
T cd06198 157 VIDSPSDG-RLTLEQLV-------RALVPDLADADVWFCGP-PGMADALEKGLRALGV 205 (216)
T ss_pred EEeCCCCc-ccchhhhh-------hhcCCCcCCCeEEEECc-HHHHHHHHHHHHHcCC
Confidence 66654332 21121111 0111 24579999999 8999999999987543
|
The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-25 Score=219.97 Aligned_cols=183 Identities=21% Similarity=0.292 Sum_probs=144.4
Q ss_pred CCChhHHHHhhCC--CC--CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEE
Q 008647 319 TPPIGVFFAAVAP--HL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 393 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~~--~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v 393 (558)
...+|||+.+.+| .. ..|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.|.+
T Consensus 30 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~---------~G~~s~~l~~~l~~G------d~v~i 93 (235)
T cd06217 30 PFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVP---------GGEVSPYLHDEVKVG------DLLEV 93 (235)
T ss_pred CcCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEE
Confidence 4568999998754 22 2499999999865 468999998642 4889999987 8999 89999
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
.+|.|.|.++....++++|||+||||||+++++++... .+ ...+++|+||+|+.+ |.+|.+||.+++++..++++
T Consensus 94 ~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~ 168 (235)
T cd06217 94 RGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRD---LG-WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHV 168 (235)
T ss_pred eCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEE
Confidence 99999988765445799999999999999999999875 22 457899999999999 99999999999987777788
Q ss_pred EEEEecCCC-C----ccchhhhhHhcHHHHHHhh--hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 474 ILAFSREGS-Q----KEYVQHKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 474 ~~a~Sr~~~-~----k~yvq~~l~~~~~~l~~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+.++||+.. . ++++.+.+ +.+++ ..+..||+||| ++|++++.+.|.+.+
T Consensus 169 ~~~~s~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~G 224 (235)
T cd06217 169 TEALTRAAPADWLGPAGRITADL------IAELVPPLAGRRVYVCGP-PAFVEAATRLLLELG 224 (235)
T ss_pred EEEeCCCCCCCcCCcCcEeCHHH------HHhhCCCccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888898622 1 23333222 11111 24679999999 899999999998754
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form |
| >PRK09004 FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-25 Score=200.66 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=91.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++++||++||||+|++|+|++.|++||+....+ |++++|||||||||+|++||.+++.+|++|+++||++|.++++
T Consensus 46 ~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~---l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~ 122 (146)
T PRK09004 46 ASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPD---LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLK 122 (146)
T ss_pred cCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCC---CCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEE
Confidence 5789999999999999999999999999886433 9999999999999999999999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
+|++. +.+..|++|++.++.+|
T Consensus 123 ~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 123 IDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred EeCCCCCCchhHHHHHHHHHHHhC
Confidence 99986 47899999999988754
|
|
| >PRK08221 anaerobic sulfite reductase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=220.65 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=139.6
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.+|...+|+|||++.+ ++.++|+|+. .|.+|+||+++++| +.|.+.+|.|
T Consensus 32 ~~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G 91 (263)
T PRK08221 32 PVKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEG------DKLFLRGPYG 91 (263)
T ss_pred CCCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCC------CEEEEECCCC
Confidence 45689999997676667999999975 4789999973 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++....+|+||||+|||||||+||+++... .+...++++|+||+|+.+ |++|.+||++|++.. .+++++
T Consensus 92 ~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~---~~~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~ 164 (263)
T PRK08221 92 NGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYE---NPQEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTL 164 (263)
T ss_pred CCcccCccCCccEEEEcccccHHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEe
Confidence 6 88775556799999999999999999998865 222346899999999999 999999999998753 245556
Q ss_pred ecCCC----CccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREGS----QKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~~----~k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++... ..+++++.+.+. .+. .+..+|+||| ++|++++.+.|.+.+.
T Consensus 165 ~~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp-~~mv~~~~~~L~~~Gv 216 (263)
T PRK08221 165 DEGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGP-PIMMKFTVLEFLKRGI 216 (263)
T ss_pred cCCCCCCccCccccChhhHhc------cCCCcCCeEEEEECC-HHHHHHHHHHHHHcCC
Confidence 65432 234555433221 011 3678999999 9999999999976543
|
|
| >cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=216.13 Aligned_cols=185 Identities=18% Similarity=0.245 Sum_probs=145.6
Q ss_pred CCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 318 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
....+|||+.+.+|. ...|+|||+|.+.. .+.++|+|+.++ .|.+|.||+++++| +.|.+.
T Consensus 27 ~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G------~~v~i~ 90 (234)
T cd06183 27 LGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPG------DTVEIR 90 (234)
T ss_pred CCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCC------CEEEEE
Confidence 346799999998564 46799999999864 468999998542 49999999999999 899999
Q ss_pred eeCCCCcCCCCCC-CCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCccE
Q 008647 395 IRPSNFKLPANPS-VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISE 472 (558)
Q Consensus 395 ~p~g~F~lp~~~~-~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~-~~~~~ 472 (558)
+|.|.|.+..... .++||||+||||||+++++++.... .....+++|+|++|+.+ +.+|.+||+++.+. ...++
T Consensus 91 gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~ 166 (234)
T cd06183 91 GPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKD---PEDKTKISLLYANRTEE-DILLREELDELAKKHPDRFK 166 (234)
T ss_pred CCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhC---cCcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEE
Confidence 9999998865544 7999999999999999999998752 11357899999999999 99999999999886 34567
Q ss_pred EEEEEecCCCC----ccchhhhhHhcHHHHHHhhh----CCCEEEEeCCCcchHH-HHHHHHHHHH
Q 008647 473 LILAFSREGSQ----KEYVQHKMMDKAAQLWSLLS----KEGYLYVCGDAKGMAR-DVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~----k~yvq~~l~~~~~~l~~~~~----~~~~iyvCGp~~~M~~-~v~~~L~~i~ 529 (558)
+++++|+.+.. .+++++.+. ...+. .+..+|+||| ++|++ ++++.|.+..
T Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~l------~~~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~G 225 (234)
T cd06183 167 VHYVLSRPPEGWKGGVGFITKEMI------KEHLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKELG 225 (234)
T ss_pred EEEEEcCCCcCCccccceECHHHH------HHhCCCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 88888875432 345543321 11222 3578999999 89999 9999887643
|
Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. |
| >PTZ00319 NADH-cytochrome B5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=223.44 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=140.1
Q ss_pred CCChhHHHHhhCCC-------CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE
Q 008647 319 TPPIGVFFAAVAPH-------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA 391 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-------~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v 391 (558)
.+.+|||+.+.++. ...|+||++|+|.. ++.++|+|+.+..........+|.+|+||+++++| +.|
T Consensus 63 ~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v 135 (300)
T PTZ00319 63 GLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLG------DKI 135 (300)
T ss_pred CCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCC------CEE
Confidence 45789999987542 24699999999854 67899999976211000011259999999999999 899
Q ss_pred EEEeeCCCCcCCCC---------------CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccc
Q 008647 392 PIFIRPSNFKLPAN---------------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFI 456 (558)
Q Consensus 392 ~v~~p~g~F~lp~~---------------~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~ 456 (558)
.+.+|.|.|.+..+ ..++++|||+|||||||++|+++... ......+++|+||+|+.+ |++
T Consensus 136 ~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~---~~~~~~~i~liyg~r~~~-dl~ 211 (300)
T PTZ00319 136 EMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKK---NKEDRTKVFLVYANQTED-DIL 211 (300)
T ss_pred EEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHh---CCCCCceEEEEEecCCHH-Hhh
Confidence 99999998865421 12489999999999999999998875 211345899999999999 999
Q ss_pred cHHHHHHHHHcCCccEEEEEEecCCC-----CccchhhhhHhcHHHHHHhhh------CCCEEEEeCCCcchHH-HHHHH
Q 008647 457 YEDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLS------KEGYLYVCGDAKGMAR-DVHRT 524 (558)
Q Consensus 457 y~~el~~~~~~~~~~~~~~a~Sr~~~-----~k~yvq~~l~~~~~~l~~~~~------~~~~iyvCGp~~~M~~-~v~~~ 524 (558)
|.++|.+++ ...+++++.+.++++. ..+++...+.+.. + .... .+..||+||| ++|++ .+.+.
T Consensus 212 ~~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~ 286 (300)
T PTZ00319 212 LRKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKPN 286 (300)
T ss_pred HHHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHHH
Confidence 999999965 4556678888887432 2355554322111 0 0001 2468999999 89998 56777
Q ss_pred HHHHH
Q 008647 525 LHTIV 529 (558)
Q Consensus 525 L~~i~ 529 (558)
|.+++
T Consensus 287 L~~~G 291 (300)
T PTZ00319 287 LEKIG 291 (300)
T ss_pred HHHcC
Confidence 76654
|
|
| >cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=215.58 Aligned_cols=188 Identities=22% Similarity=0.345 Sum_probs=143.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.+|. ..+|+|||+|.|.. +.++|+|+++. .|.+|.||+ ++++| +.+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVP---------GGRFSNWANDELKAG------DTLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcC---------CCccchhHHhccCCC------CEEEEe
Confidence 46789999998542 36799999998864 47999998653 599999998 69999 899999
Q ss_pred eeCCCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-ccE
Q 008647 395 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISE 472 (558)
Q Consensus 395 ~p~g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~ 472 (558)
+|.|.|.++.+ ..+++||||+|||||||+++++++.. .+ ..++++|+|++|+.. |++|.+||+++++... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALA---RE-PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 99999988765 46899999999999999999999875 21 357899999999999 9999999999987654 566
Q ss_pred EEEEEecCCCCccchhhhhHhc-HHHHH-Hhh--hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQKEYVQHKMMDK-AAQLW-SLL--SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~k~yvq~~l~~~-~~~l~-~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+..++|+++....+....+.+. ..... +.. .++..||+||| +.|++.+.+.|.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~G 229 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLELG 229 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 7778887654322122222211 11111 111 23579999999 899999999987654
|
PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and |
| >PRK08105 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-24 Score=197.86 Aligned_cols=98 Identities=24% Similarity=0.423 Sum_probs=89.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||++||||+|+||+|+..||++|++... .|++++|||||||||+|++||.++++++++|+++||++|+++++
T Consensus 48 ~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~---~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~ 124 (149)
T PRK08105 48 QDELVLVVTSTTGQGDLPDSIVPLFQALKDTAG---YQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLE 124 (149)
T ss_pred cCCeEEEEECCCCCCCCChhHHHHHHHHHhcCc---ccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEe
Confidence 358999999999999999999999999987532 39999999999999999999999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
+|+++ +.+..|++|+++ |..+
T Consensus 125 ~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 125 IDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred eeCCCCCChHHHHHHHHHH-HHHH
Confidence 99877 589999999988 6554
|
|
| >TIGR02911 sulfite_red_B sulfite reductase, subunit B | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=216.43 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=137.8
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.+|...+|+|||+|.+ .+.++|+|+. .|.+|++|+++++| +.|.+.+|.|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~G------d~v~i~gP~G 89 (261)
T TIGR02911 30 PVKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEG------DNLFLRGPYG 89 (261)
T ss_pred CCCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCC------CEEEEecCCC
Confidence 35789999988787778999999853 5789999983 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++....+|+||||+||||||++||++++.. ++...++++|+||+|+.+ |++|.+||++|++.. .+..++
T Consensus 90 ~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~---~~~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~ 162 (261)
T TIGR02911 90 NGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVK---NPKEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTL 162 (261)
T ss_pred CCcccCccCCceEEEEecccCcHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEE
Confidence 6 87765556899999999999999999998765 222346899999999999 999999999998753 234444
Q ss_pred ecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 478 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 478 Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++.. ..+++.+.+.+.. +.+ ..+..+|+||| +.|++++.+.|.+..
T Consensus 163 ~~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 163 DEAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKKG 213 (261)
T ss_pred cCCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHcC
Confidence 54322 2345554332210 000 13578999999 899999999987754
|
Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. |
| >cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=213.44 Aligned_cols=174 Identities=18% Similarity=0.285 Sum_probs=137.8
Q ss_pred CCChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++++| ++|.|.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~G------d~v~i~ 85 (246)
T cd06218 24 AAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAG------DELDVL 85 (246)
T ss_pred cCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCC------CEEEEE
Confidence 45789999988553 35799999998854 57899998743 7789999999999 899999
Q ss_pred eeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 395 IRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 395 ~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
+|.| .|.++. ..+++||||+|||||||+||++++.. ...+++|+|++|+.+ |.+|+++|+++.. ++
T Consensus 86 gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~ 152 (246)
T cd06218 86 GPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAE------RGIKVTVLLGFRSAD-DLFLVEEFEALGA-----EV 152 (246)
T ss_pred ecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHh------cCCceEEEEEccchh-hhhhHHHHHhhCC-----cE
Confidence 9999 477764 46899999999999999999998765 246899999999999 9999999999853 23
Q ss_pred EEEEecCC--CCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 474 ILAFSREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 474 ~~a~Sr~~--~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
.+ .+++. ..++|+++.+.+.... ..+..||+||| ++|++++++.|.+...
T Consensus 153 ~~-~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~Gv 204 (246)
T cd06218 153 YV-ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAERGV 204 (246)
T ss_pred EE-EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 32 23332 2356788766554322 14689999999 8999999999987654
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-24 Score=206.18 Aligned_cols=175 Identities=20% Similarity=0.244 Sum_probs=136.4
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~ 397 (558)
...+|||+.+.+|....|+|||+|.|.+ .+.++|+|+.+.. .+.+|.||++ +++| +.|.+.+|.
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~~--------g~~~s~~l~~~~~~G------d~v~i~gP~ 89 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREPA--------SRGGSRYMHELLRVG------DELEVSAPR 89 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEeccC--------CCchHHHHHhcCCCC------CEEEEcCCc
Confidence 5678999999866667899999999864 5889999985420 2347999976 7889 899999999
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
|.|.++.+ .+++||||+||||||+++|+++... ...+++|+||+|+.+ |.+|.++|++++ .. .+.+.+
T Consensus 90 g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~------~~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~ 157 (211)
T cd06185 90 NLFPLDEA-ARRHLLIAGGIGITPILSMARALAA------RGADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHF 157 (211)
T ss_pred cCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHh------CCCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEE
Confidence 99988643 5799999999999999999998764 236899999999998 999999999987 22 244455
Q ss_pred ecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++.. ....+.+.+.. ...+..+|+||| +.|++++++.|.+...
T Consensus 158 ~~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~gv 200 (211)
T cd06185 158 DDEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAALGW 200 (211)
T ss_pred CCCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 5543 23333333321 124679999999 8999999999977643
|
PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal. |
| >COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=208.04 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=147.7
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.+|....|+|||+|.+.. .+.++|.|++.. .|.+|.+++.+++| +.|.+.||.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~~---------~G~~T~~i~~~k~g------d~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVYE---------VGKVTKYIFGLKEG------DKIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEEe---------CChHHHHHhhccCC------CEEEEEcCCC
Confidence 4789999999978889999999999975 677888888765 59999999999999 8999999999
Q ss_pred CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEe
Q 008647 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 478 (558)
Q Consensus 399 ~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~S 478 (558)
++.+.++..+|+++||+|||+||+++++++... ++ ...+++++||+|++. |+++.+||+++... +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~---~~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKE---KG-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHh---cC-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 776665567789999999999999999999876 34 558999999999999 99999999999875 3555555
Q ss_pred cCCC--Cccch-hhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 479 REGS--QKEYV-QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 479 r~~~--~k~yv-q~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++. .+++| ++.+.+... .+...+|+||| +.|++++.+.+.+..
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 322 46777 665544321 14689999999 999999999888765
|
|
| >cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=203.86 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=122.2
Q ss_pred CCChhHHHHhhCCCC-------------------CCcccccCCCCCCC--CCeEEEEEEEEEccCCCCCcccCcccHHhh
Q 008647 319 TPPIGVFFAAVAPHL-------------------QPRYYSISSSPRFA--PDRVHVTCALVYGPTPTGRIHKGVCSTWMK 377 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-------------------~pR~YSIaS~p~~~--~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~ 377 (558)
.+.+|||+.+.+|.. ..|+|||||+|..+ .+.++|+|+. .|.+|++|.
T Consensus 25 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~ 93 (220)
T cd06197 25 KWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLF 93 (220)
T ss_pred ccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHH
Confidence 456899988875532 34999999999653 2688888873 389999999
Q ss_pred hcCC-----CCCCCCccEEEEEeeCCCCcCCC---CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEecc
Q 008647 378 NAIP-----LEGNGDCSWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCR 449 (558)
Q Consensus 378 ~l~~-----G~~~~~~~~v~v~~p~g~F~lp~---~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R 449 (558)
++.. | +.+.+.+|.|.|.++. +..+++||||||||||||++|++++.. .+....+++|+||+|
T Consensus 94 ~~~~~~~~~G------~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~---~~~~~~~v~l~~~~r 164 (220)
T cd06197 94 QVARRLREQG------LEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILS---SRNTTWDITLLWSLR 164 (220)
T ss_pred HhhhcccCCC------ceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHh---cccCCCcEEEEEEec
Confidence 8543 7 8999999999998874 335799999999999999999998875 221357899999999
Q ss_pred CCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHH
Q 008647 450 NRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 527 (558)
Q Consensus 450 ~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~ 527 (558)
+.+ |++|.+||.++... ...+.... ...||+||| ++|++++.+.+.+
T Consensus 165 ~~~-~~~~~~el~~~~~~--~~~~~~~~---------------------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 165 EDD-LPLVMDTLVRFPGL--PVSTTLFI---------------------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred chh-hHHHHHHHHhccCC--ceEEEEEE---------------------------eccEEEECc-HHHHHHHHHHhhh
Confidence 999 99999999886531 11111111 117999999 8999999887765
|
Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity |
| >KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-23 Score=202.91 Aligned_cols=183 Identities=15% Similarity=0.201 Sum_probs=148.2
Q ss_pred CCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+|.||.+.+.+|.. .-|+||..|++.. .+.++|.|++.. .|.+|.||.++++| |+|.++|
T Consensus 81 ~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~---------~G~mS~~l~~LkiG------d~ve~rG 144 (286)
T KOG0534|consen 81 GLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYP---------KGKMSQHLDSLKIG------DTVEFRG 144 (286)
T ss_pred CcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEecc---------CCcccHHHhcCCCC------CEEEEec
Confidence 468888888875543 5799999999876 689999999764 59999999999999 9999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-ccEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELI 474 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~~~ 474 (558)
|.|.|.++....+.+.|||||||||||++++++++.. ..+..+++|+|++++++ |+++++||+.++++.+ .++++
T Consensus 145 P~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~---~~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~ 220 (286)
T KOG0534|consen 145 PIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKD---PEDTTKISLLYANKTED-DILLREELEELASKYPERFKVW 220 (286)
T ss_pred CccceEecCCCcceEEEEecccchhhHHHHHHHHhcC---CCCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEE
Confidence 9999888766678999999999999999999998862 23467899999999999 9999999999999987 88899
Q ss_pred EEEecCCC----CccchhhhhHhcHHHHHHhhh---C-CCEEEEeCCCcchHHH-HHHHHHHH
Q 008647 475 LAFSREGS----QKEYVQHKMMDKAAQLWSLLS---K-EGYLYVCGDAKGMARD-VHRTLHTI 528 (558)
Q Consensus 475 ~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~---~-~~~iyvCGp~~~M~~~-v~~~L~~i 528 (558)
.+.++++. .++||..-+ +...+. + ...++|||| ++|.+. +...|.++
T Consensus 221 y~v~~~~~~w~~~~g~It~~~------i~~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~L 276 (286)
T KOG0534|consen 221 YVVDQPPEIWDGSVGFITKDL------IKEHLPPPKEGETLVLICGP-PPMINGAAQGNLEKL 276 (286)
T ss_pred EEEcCCcccccCccCccCHHH------HHhhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHhc
Confidence 99988874 345654322 222222 2 478999999 899984 44444433
|
|
| >cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-23 Score=202.79 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=131.0
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
...+|||+.+.+|....|+|||+|.| +.++|+|+. .|.+|+||+++++| +.+.+.+|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~G------d~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEG------DKLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCC------CEEEEECcCC
Confidence 56789999997666667999999997 679998873 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++ .+|+||||+|||||||++|+++... . ++++|+|++|+.+ |++|.+||++. . ++.++.
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~------~-~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKK------A-ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHh------c-CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 5799999999999999999998765 2 7899999999999 99999999972 1 233322
Q ss_pred ecCC--CCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~--~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+ +. ...+++++.+.+.. ......||+||| ++|++++.+.|.+...
T Consensus 145 ~-~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g~ 191 (233)
T cd06220 145 D-DGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERGV 191 (233)
T ss_pred e-CCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 2 21 12456665443321 123468999999 8999999999977543
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=209.59 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=132.3
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 396 (558)
...+|||+.+.++.. .+|+|||+|.+.. ++.++|+|++ .|.+|.+|+++++| +.| .|.+|
T Consensus 27 ~~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~G------d~v~~i~GP 88 (281)
T PRK06222 27 KAKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEG------DSILDVVGP 88 (281)
T ss_pred cCCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCC------CEEeeEEcC
Confidence 356899999975543 4689999998754 5789999984 38999999999999 899 79999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|..... .+++||||+|+||||+++++++... ...+++|+||+|+.+ |++|.+||++++.. +++
T Consensus 89 ~G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~------~~~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v- 154 (281)
T PRK06222 89 LGKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKE------AGNKVITIIGARNKD-LLILEDEMKAVSDE-----LYV- 154 (281)
T ss_pred CCCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHH------CCCeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-
Confidence 997654433 5799999999999999999998764 235799999999999 99999999988652 222
Q ss_pred EecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.+.++. .+++|++.+.+.... ......||+||| ++|++++.+.+.+..
T Consensus 155 ~~~d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (281)
T PRK06222 155 TTDDGSYGRKGFVTDVLKELLES----GKKVDRVVAIGP-VIMMKFVAELTKPYG 204 (281)
T ss_pred EcCCCCcCcccchHHHHHHHhhc----CCCCcEEEEECC-HHHHHHHHHHHHhcC
Confidence 233322 345666655432111 111458999999 999999999887654
|
|
| >cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-23 Score=204.61 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=131.7
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 396 (558)
.+.+|||+.+.++. ...|+|||+|.|.. .+.++|+|+. .|..|.+|.++++| +.+ .+.+|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G------~~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEG------DKIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCC------CEeeeeecC
Confidence 45789999987442 35799999998754 5789999974 38899999999999 899 69999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.+.. ..+++||||+||||||+++|+++... ...+++|+||+|+.+ |++|.+||++++++ ++.+
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~------~~~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKE------AGNRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHH------cCCeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 99876543 35799999999999999999999765 236899999999999 99999999999653 2222
Q ss_pred EecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 477 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 477 ~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
+++.. ..+++++.+.+... + ......||+||| ++|++.+.+.|.+.
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGP-~~m~~~~~~~l~~~ 202 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELIE---S-GEKVDLVIAIGP-PIMMKAVSELTRPY 202 (248)
T ss_pred -eCCCCCCccccchHHHHHHHh---c-cCCccEEEEECC-HHHHHHHHHHHHHc
Confidence 33322 34566654433211 1 113458999999 89999999988754
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, |
| >PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=204.77 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=133.9
Q ss_pred CCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+|.. .+|+|||+|+| .+.++|+|+. .|.+|++|.++++| ++|.|.+
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G------~~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEG------DELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCC------CEEEEEc
Confidence 467999999875544 68999999998 4789999984 38899999999999 8999999
Q ss_pred eCCC-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 396 RPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 396 p~g~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
|.|. |.++. ..+++||||+||||||++|++++... ...+++|+|++|+.+ |++|.+||+++++ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKK------KGVEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHH------cCCcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 9995 88764 45799999999999999999999875 235799999999999 9999999998432 22
Q ss_pred EEEecCC--CCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 475 LAFSREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~--~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+. +++. ..++++++.+.+.. .....||+||| +.|++++.+.|.+..
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~G 204 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEKK 204 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 22 2332 13567777664321 24568999999 899999999998754
|
|
| >cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-23 Score=202.95 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=132.1
Q ss_pred CCChhHHHHhhCC---CCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p---~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+| ....|+|||+|.|.. .+.++|+|+. .|.+|+||.++++| +.+.|.+
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G------~~l~i~g 85 (243)
T cd06192 24 LFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPG------EKLDVMG 85 (243)
T ss_pred cCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCC------CEEEEEc
Confidence 4578999998853 446799999999854 5789999874 38899999999999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.+..+..+++||||+|||||||++|+++... ...+++|+||+|+.+ |.+|.+||+++. . ...
T Consensus 86 P~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~ 152 (243)
T cd06192 86 PLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAA------NGNKVTVLAGAKKAK-EEFLDEYFELPA----D--VEI 152 (243)
T ss_pred cCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHH------CCCeEEEEEecCcHH-HHHHHHHHHhhc----C--eEE
Confidence 999766554446799999999999999999998775 246899999999999 999999998872 1 222
Q ss_pred EEecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
..++++. ..+++++... .+ . ......+|+||| ++|++++++.|.+.+
T Consensus 153 ~~~~~~~~~~~g~v~~~~~----~~-~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 153 WTTDDGELGLEGKVTDSDK----PI-P-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EEecCCCCccceeechhhh----hh-h-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 3344332 2344443210 10 0 123468999999 899999999998865
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi |
| >COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=193.96 Aligned_cols=187 Identities=19% Similarity=0.329 Sum_probs=148.5
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilI 413 (558)
.-|+||+||-|.+ .+.+.|-|++-.-+-.+.....|.||+|+..|++| |+|.|+||+|.|... +..+++|||
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpG------DKvtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCC------CeEEEeccchhhhhc-cCCCceEEE
Confidence 4599999999977 67888888876433333456789999999999999 999999999987766 457899999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCc------cch
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK------EYV 487 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k------~yv 487 (558)
+||.|.|||||-+-..+.+. ...+++.++||+|+.. +.+|++++++++++.++|+.|+++|.+..+. +++
T Consensus 282 gGGAGmapmRSHIfDqL~rl---hSkRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRL---HSKRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhh---cccceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 99999999999776666532 2568999999999999 9999999999999999999999999876532 333
Q ss_pred hhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCC
Q 008647 488 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENV 535 (558)
Q Consensus 488 q~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~ 535 (558)
...+.++ .+.++- .++..+|+||| +-|..+|.+.|.+++++..++
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~enI 403 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERENI 403 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccce
Confidence 3333222 111111 24679999999 889999999999998766543
|
|
| >COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-23 Score=202.77 Aligned_cols=177 Identities=16% Similarity=0.245 Sum_probs=138.6
Q ss_pred ChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 321 PIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 321 ~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
.+|||.-+.++. +.|+|||||++... .++++.||. .|..|.-|.+ +++| +++.+.+
T Consensus 244 qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G------~k~~vdG 304 (438)
T COG4097 244 QAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVG------TKLEVDG 304 (438)
T ss_pred cCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCC------ceEEEec
Confidence 467876554443 45999999999753 479999984 4999999999 9999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|+|.|......+ ..|+||||+|||||+|+++..... ....++.|||++|+.+ +.+|.+||++++++.+++.++.
T Consensus 305 PYG~F~~~~g~~-~QVWIAGGIGITPFis~l~~l~~~----~s~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHi 378 (438)
T COG4097 305 PYGKFDFERGLN-TQVWIAGGIGITPFISMLFTLAER----KSDPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHI 378 (438)
T ss_pred CcceeecccCCc-ccEEEecCcCcchHHHHHHhhccc----ccCCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEE
Confidence 999998875432 389999999999999999987652 2568999999999999 9999999999999888877776
Q ss_pred EEecCCCCccchh-hhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 476 AFSREGSQKEYVQ-HKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 476 a~Sr~~~~k~yvq-~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
. |++.++|+. +.+....+. .....||+||| .+|++++++.|++...+
T Consensus 379 i---DSs~~g~l~~e~ler~~~~-----~~~~sv~fCGP-~~m~dsL~r~l~~~~~~ 426 (438)
T COG4097 379 I---DSSKDGYLDQEDLERYPDR-----PRTRSVFFCGP-IKMMDSLRRDLKKQNVP 426 (438)
T ss_pred e---cCCCCCccCHHHhhccccc-----cCcceEEEEcC-HHHHHHHHHHHHHcCCC
Confidence 3 333456663 333332211 12348999999 89999999999876543
|
|
| >PRK05802 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=208.91 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=128.6
Q ss_pred CChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEee
Q 008647 320 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 320 ~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p 396 (558)
+.+|||+.+..|. ...|+|||+|+|.. .+.++|+|++ .|..|++|+++++| +.|.|.+|
T Consensus 95 ~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~G------d~l~v~GP 156 (320)
T PRK05802 95 VYPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKG------DEILLRGP 156 (320)
T ss_pred CCCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCC------CEEEEeCC
Confidence 3689999987442 34599999999865 5889999985 39999999999999 89999999
Q ss_pred CC--CCcCC---CCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcc
Q 008647 397 PS--NFKLP---ANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 471 (558)
Q Consensus 397 ~g--~F~lp---~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~ 471 (558)
.| .|.++ ....+++||||+|+||||++++++++.. + ..+++|+||+|+++ |++|.++|+++..+...+
T Consensus 157 ~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~---~---~~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~ 229 (320)
T PRK05802 157 YWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS---N---GNKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL 229 (320)
T ss_pred CCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH---c---CCcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE
Confidence 95 46653 2334689999999999999999998875 2 25899999999999 999999999986542221
Q ss_pred EEEEEEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 472 ELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 472 ~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
.+..++. .++++++.+.+. +...||+||| +.|++.|.+.+.++
T Consensus 230 ----~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 230 ----NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ----EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1112221 123344433211 2368999999 89999999998874
|
|
| >PLN02252 nitrate reductase [NADPH] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=229.12 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=143.6
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+++|||+.+.++ . ...|+|||+|.+.. .+.++|+|+++...........|.+|++|.++++| +.|.|.+
T Consensus 664 gl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vG------d~V~V~G 736 (888)
T PLN02252 664 GLPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIG------DTIDVKG 736 (888)
T ss_pred CCCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCC------CEEEEec
Confidence 3478998888643 2 25799999999865 57899999976211000111359999999999999 8999999
Q ss_pred eCCCCcC--------CCC--CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 008647 396 RPSNFKL--------PAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 465 (558)
Q Consensus 396 p~g~F~l--------p~~--~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~ 465 (558)
|.|.|.+ +.. ..++++|||+|||||||++|+++++.. .....+++||||+|+.+ |++|++||++++
T Consensus 737 P~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~---~~d~t~i~Liyg~Rt~~-Dil~~eEL~~la 812 (888)
T PLN02252 737 PLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD---PEDKTEMSLVYANRTED-DILLREELDRWA 812 (888)
T ss_pred CccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc---cCCCCcEEEEEEECCHH-HhhHHHHHHHHH
Confidence 9997643 322 247999999999999999999998752 22457899999999999 999999999999
Q ss_pred HcC-CccEEEEEEecCC-C----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHH-HHHHHHHHH
Q 008647 466 EEG-VISELILAFSREG-S----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARD-VHRTLHTIV 529 (558)
Q Consensus 466 ~~~-~~~~~~~a~Sr~~-~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~-v~~~L~~i~ 529 (558)
+.. ..++++.++|++. + ..+++.+.+.+. .......+..+|+||| ++|++. +...|.+++
T Consensus 813 ~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~G 879 (888)
T PLN02252 813 AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGP-PPMIEFACQPNLEKMG 879 (888)
T ss_pred HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCC-HHHHHHHHHHHHHHcC
Confidence 876 5678888888753 2 235555433211 1000113568999999 999984 777776654
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=229.36 Aligned_cols=186 Identities=17% Similarity=0.259 Sum_probs=142.8
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.++ + ...|+|||+|.|.. .+.++|+|+. ..|.+|+||+++++| +.|.|.+
T Consensus 947 ~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~G------d~v~v~g 1009 (1167)
T PTZ00306 947 GLTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPG------DSVEMKA 1009 (1167)
T ss_pred CCCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCC------CEEEEeC
Confidence 3578999999743 1 23599999999964 5789988862 149999999999999 8999999
Q ss_pred eCC----------CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 008647 396 RPS----------NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 465 (558)
Q Consensus 396 p~g----------~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~ 465 (558)
|.| .|.++....+|+||||+|||||||+||+++++... ......+++||||+|+.+ |++|++||++|+
T Consensus 1010 p~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~-~~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~ 1087 (1167)
T PTZ00306 1010 CGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKP-YVDSIESIRLIYAAEDVS-ELTYRELLESYR 1087 (1167)
T ss_pred CcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCc-ccCCCceEEEEEEeCCHH-HhhHHHHHHHHH
Confidence 655 45565555689999999999999999999877510 001246899999999999 999999999999
Q ss_pred HcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh---CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 466 EEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS---KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 466 ~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~---~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++.+ .+++++++|++++ ..+++++.+. .+.+. .+..||+||| ++|++++.+.|++...
T Consensus 1088 ~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l------~~~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1088 KENPGKFKCHFVLNNPPEGWTDGVGFVDRALL------QSALQPPSKDLLVAICGP-PVMQRAVKADLLALGY 1153 (1167)
T ss_pred HHCCCCEEEEEEECCCCcccCCCCCCCCHHHH------HHhcCCCCCCeEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 8765 5789999997643 2355554321 12221 3568999999 9999999999877543
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=211.05 Aligned_cols=174 Identities=17% Similarity=0.190 Sum_probs=134.7
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 396 (558)
.+.+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+++ |.+|.+|+++++| +.+ .|.+|
T Consensus 27 ~~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~G------d~v~~v~GP 88 (752)
T PRK12778 27 SRKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEG------DYITDVVGP 88 (752)
T ss_pred cCCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCC------CEeCeEeCC
Confidence 356899999975543 4689999999865 57899999854 8999999999999 899 79999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|..... .++++|||+|+|||||++++++... ...+++||||+|+.+ |++|.+||++++.+ ++++
T Consensus 89 ~G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~------~~~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~ 155 (752)
T PRK12778 89 LGNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKA------AGNRVITILGGRSKE-LIILEDEMRESSDE-----VIIM 155 (752)
T ss_pred CCCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHH------CCCeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 997765533 4799999999999999999998775 235899999999999 99999999988652 2222
Q ss_pred EecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+.+++ .+++|++.+.+.... ......||+||| ++|++.+.+.+.+..
T Consensus 156 -t~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (752)
T PRK12778 156 -TDDGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGP-AIMMKFVCLLTKKYG 204 (752)
T ss_pred -ECCCCCCCcccHHHHHHHHhhc----CCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 33332 356777765432211 112357999999 999999999887643
|
|
| >cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-20 Score=183.40 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=122.9
Q ss_pred CChhHHHHhhCCC----------------------CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh
Q 008647 320 PPIGVFFAAVAPH----------------------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK 377 (558)
Q Consensus 320 ~~~~~~l~~~~p~----------------------~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~ 377 (558)
..+|||+.+.+|. ...|+|||+|.+.. .++++|.|+++. ..|.+|+||+
T Consensus 27 ~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l~ 97 (235)
T cd06193 27 DGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWAA 97 (235)
T ss_pred CCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHHh
Confidence 4679999987553 34699999998754 688999997542 0289999999
Q ss_pred hcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCcccc
Q 008647 378 NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 378 ~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y 457 (558)
++++| +.|.+.+|.|.|.++. ..+++||||+||||||+++|+++... ..+++++|++|+.+ |.++
T Consensus 98 ~l~~G------d~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~-------~~~~~~~~~~~~~~-d~~~ 162 (235)
T cd06193 98 SAQPG------DTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA-------DARGTALIEVPDAA-DEQP 162 (235)
T ss_pred hCCCC------CEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC-------CCeEEEEEEECCHH-Hccc
Confidence 99999 9999999999988764 35799999999999999999997542 26899999999986 6554
Q ss_pred HHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 458 EDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 458 ~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
.+++ ..++++.+.+++. ........+.. . .........+|+||| ++|++.+++.|.+.
T Consensus 163 l~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~---~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~~ 220 (235)
T cd06193 163 LPAP-------AGVEVTWLHRGGA-EAGELALLAVR---A-LAPPAGDGYVWIAGE-AGAVRALRRHLREE 220 (235)
T ss_pred cCCC-------CCcEEEEEeCCCC-CcchhHHHHHh---c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHHc
Confidence 3332 1335555554433 22111110000 0 000123579999999 89999999888653
|
Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy |
| >cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-19 Score=174.64 Aligned_cols=164 Identities=20% Similarity=0.232 Sum_probs=123.2
Q ss_pred CCCChhHHHHhhCCCC----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcC------CCCCCCC
Q 008647 318 ATPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI------PLEGNGD 387 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~------~G~~~~~ 387 (558)
..+.+|||+.+.+|.. ..|+|||+|.|....+.++|+|+.. .|..|..+..+. .|
T Consensus 23 ~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~----- 87 (210)
T cd06186 23 FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVS----- 87 (210)
T ss_pred CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCce-----
Confidence 3567899999886754 6899999999864347899999853 388888888776 56
Q ss_pred ccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCc-cccHHHHHHHHH
Q 008647 388 CSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMD-FIYEDELNNFEE 466 (558)
Q Consensus 388 ~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d-~~y~~el~~~~~ 466 (558)
+.+.+.+|+|.+..+.....++||||+||||||++++++++.....+.....++.|+|++|+.+ | ..|.++|.+..+
T Consensus 88 -~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~ 165 (210)
T cd06186 88 -LKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQE 165 (210)
T ss_pred -eEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhh
Confidence 8999999999876443446799999999999999999999876321101357899999999998 7 579999975111
Q ss_pred cCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHH
Q 008647 467 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 527 (558)
Q Consensus 467 ~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~ 527 (558)
-....++.+.+++ ||+||| .+|+++++....+
T Consensus 166 ~~~~~~~~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 166 LEVDGEIEIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred ccCCceEEEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 1111123443443 999999 8899999887766
|
ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-19 Score=203.23 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=132.6
Q ss_pred CCChhHHHHhhCC-CCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEE-EEee
Q 008647 319 TPPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP-IFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p-~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~-v~~p 396 (558)
.+.+|||+.+..+ +...|+|||+|.|.. .+.++|+|+++ |..|.+|.++++| +.+. |.+|
T Consensus 676 ~~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~G------d~l~~I~GP 737 (944)
T PRK12779 676 SAQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIG------DAFSGIAGP 737 (944)
T ss_pred cCCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCc------CEEeeeecC
Confidence 4568999999843 234599999998754 57899999853 8889999999999 8995 9999
Q ss_pred CCCC-cCCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHH---HHHHHHcCC-c
Q 008647 397 PSNF-KLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDE---LNNFEEEGV-I 470 (558)
Q Consensus 397 ~g~F-~lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~e---l~~~~~~~~-~ 470 (558)
.|.| .++. ...+++||||||+||||+++|+++... ...+++|+||+|+++ |++|.++ |++|++... .
T Consensus 738 lG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~------~g~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~ 810 (944)
T PRK12779 738 LGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR------LGNHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQ 810 (944)
T ss_pred CCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH------CCCCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCC
Confidence 9965 4443 224699999999999999999998765 236899999999998 8888766 455665543 3
Q ss_pred cEEEEEEecCCC--CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 471 SELILAFSREGS--QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 471 ~~~~~a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++++++ +.++. .+++|++.+.+........-. ....||+||| ++|++.+.+.|.+..
T Consensus 811 ~~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~G 870 (944)
T PRK12779 811 LDVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPYG 870 (944)
T ss_pred eEEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 344433 43332 357777765432211000000 1358999999 999999999887654
|
|
| >PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-18 Score=147.98 Aligned_cols=104 Identities=23% Similarity=0.439 Sum_probs=81.0
Q ss_pred EEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-cEEEEEEecCCC----Cccc
Q 008647 412 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFSREGS----QKEY 486 (558)
Q Consensus 412 lIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~Sr~~~----~k~y 486 (558)
|||||||||||+||++++... ....+++|+||+|+.+ |++|.++|+++++.... ++++.+ ++.+. .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER----NDNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH----TCTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHh----CCCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 799999999999999998873 2678999999999999 99999999999988765 334433 33332 3678
Q ss_pred hhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHH
Q 008647 487 VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHR 523 (558)
Q Consensus 487 vq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~ 523 (558)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 88888554322 122346889999999 999999874
|
Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A .... |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-18 Score=196.58 Aligned_cols=173 Identities=15% Similarity=0.157 Sum_probs=129.9
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHh-hhcCCCCCCCCccEE-EEEe
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWA-PIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L-~~l~~G~~~~~~~~v-~v~~ 395 (558)
...+|||+.+.++. ..+|+|||++.+.. .+.++|.|++ .|..|.|| .++++| +.+ .+.+
T Consensus 27 ~~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~G------d~l~~v~G 88 (1006)
T PRK12775 27 SAEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAG------DTFEDFVG 88 (1006)
T ss_pred CCCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCC------CEEeeeec
Confidence 34689999997543 34699999998754 5788888874 38999998 479999 888 7999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.+.... ..+++||||||+||||+++|+++... ...+++++||+|+.+ +++|.+||+++... +++
T Consensus 89 PlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~------~g~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v 155 (1006)
T PRK12775 89 PLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKE------AGARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIV 155 (1006)
T ss_pred CCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHh------CCCcEEEEEeCCChH-HcccHHHHHhhcCc-----EEE
Confidence 999654332 24689999999999999999998764 235799999999998 99999999887532 232
Q ss_pred EEecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+ +.+++ .+++|++.+.+.... .....||+||| +.|++.+.+.+++..
T Consensus 156 ~-tddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP-~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 156 C-TDDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGP-LPMMNACVETTRPFG 204 (1006)
T ss_pred E-ECCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECC-HHHHHHHHHHHHHCC
Confidence 2 33332 357777665442210 12358999999 899999999887543
|
|
| >PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-17 Score=152.23 Aligned_cols=94 Identities=34% Similarity=0.511 Sum_probs=83.0
Q ss_pred CCcEEEEEeccCCCCCCCccHH-HHHHHHhcCC--CCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAA-RFYKWFTEGN--DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~-~f~~~l~~~~--~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.+||++||||+|+||+|+. .|++|+.... .....|++++|||||+||+.|.+||.+++.++++|+++||+++.+
T Consensus 45 ~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~ 124 (143)
T PF00258_consen 45 EYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGP 124 (143)
T ss_dssp TTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESS
T ss_pred hhceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEEC
Confidence 4679999999999999999999 6677775431 112348999999999999999889999999999999999999999
Q ss_pred CcccCCCC--CchhHHHHH
Q 008647 79 LGLGDDDQ--CIEDDFTAW 95 (558)
Q Consensus 79 ~~~~d~~~--~~~~~~~~W 95 (558)
++++|+.+ +.++.|++|
T Consensus 125 ~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 125 LLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp SEEEETTTHGGHHHHHHHH
T ss_pred cEEEecCCCcChHHHHhCC
Confidence 99999998 789999999
|
Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A .... |
| >PLN02844 oxidoreductase/ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-15 Score=165.01 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=127.0
Q ss_pred CCCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cC----CCCCCCCcc
Q 008647 318 ATPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI----PLEGNGDCS 389 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~----~G~~~~~~~ 389 (558)
.+..+|||+.+.+|.. +.|+|||+|+|..+++.++++|++. |..|+.|.+ ++ +|.....+.
T Consensus 337 ~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~ 405 (722)
T PLN02844 337 LKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCI 405 (722)
T ss_pred CCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccce
Confidence 4567899999876653 5799999998754467889988742 555666654 32 231111124
Q ss_pred EEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHH---
Q 008647 390 WAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE--- 465 (558)
Q Consensus 390 ~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~--- 465 (558)
++.+.+|+|.+..+....++++||||||||||++|++++........ ....++.|+|++|+.+ |..|.+++....
T Consensus 406 ~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~ 484 (722)
T PLN02844 406 PVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQ 484 (722)
T ss_pred EEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHh
Confidence 78999999988765444579999999999999999999987521100 1236899999999999 999999986321
Q ss_pred -HcCCccEEEEEEecCCCCccchhhhhHhc--HHHHHHhhhCCCEEEEeCCCc
Q 008647 466 -EEGVISELILAFSREGSQKEYVQHKMMDK--AAQLWSLLSKEGYLYVCGDAK 515 (558)
Q Consensus 466 -~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~--~~~l~~~~~~~~~iyvCGp~~ 515 (558)
.+....+++...+|+......+++.+... .+.+. +-.+..++.+||+..
T Consensus 485 ~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 485 SSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLES 536 (722)
T ss_pred HHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCc
Confidence 12234578888999876555666655442 11111 223457899999953
|
|
| >PRK07308 flavodoxin; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=135.16 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=81.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.|||++||||+|++|+++..|+++|.... +++++|+|||+||+.|+.||.+++.++++|.++||+.+.+..+
T Consensus 48 ~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~-----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~ 122 (146)
T PRK07308 48 DADIAIVATYTYGDGELPDEIVDFYEDLADLD-----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVK 122 (146)
T ss_pred cCCEEEEEeCccCCCCCCHHHHHHHHHHhcCC-----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEE
Confidence 57899999999999999999999999997764 7899999999999999999999999999999999999999998
Q ss_pred cCCCCC--chhHHHHHHHHHH
Q 008647 82 GDDDQC--IEDDFTAWRELVW 100 (558)
Q Consensus 82 ~d~~~~--~~~~~~~W~~~l~ 100 (558)
.+...+ ......+|.++|.
T Consensus 123 ~~~~p~~~~~~~~~~~~~~l~ 143 (146)
T PRK07308 123 VDLAAEDEDIERLEAFAEELA 143 (146)
T ss_pred EeCCCCHHHHHHHHHHHHHHH
Confidence 887762 3444556665543
|
|
| >PLN02292 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-15 Score=163.47 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=122.3
Q ss_pred CCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEE
Q 008647 318 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 393 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v 393 (558)
....+||++-+.+|. .+.|||||+|+|..+++.++++||. .|..|++|.+ ++.|+ ....-++.+
T Consensus 350 ~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd-~i~~~~V~V 417 (702)
T PLN02292 350 LMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSD-QIDRLAVSV 417 (702)
T ss_pred CCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCC-ccccceEEE
Confidence 345688887776564 3689999999985446789999983 3888999988 57772 111125789
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHH-------HH
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNN-------FE 465 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~-------~~ 465 (558)
.||+|.+..+.....+++|||||+||||+++++++..+....+ ....++.|+|++|+.+ |.++.+++.. ++
T Consensus 418 eGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~ 496 (702)
T PLN02292 418 EGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELS 496 (702)
T ss_pred ECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHh
Confidence 9999977544334469999999999999999999987631111 0136899999999999 9998876543 22
Q ss_pred HcCCccEEEEEEecCCCCcc-chhhhhHhcHHHHHHhh-----hCCCEEEEeCCC
Q 008647 466 EEGVISELILAFSREGSQKE-YVQHKMMDKAAQLWSLL-----SKEGYLYVCGDA 514 (558)
Q Consensus 466 ~~~~~~~~~~a~Sr~~~~k~-yvq~~l~~~~~~l~~~~-----~~~~~iyvCGp~ 514 (558)
++ ...++...++|+.+.+. |-++ ..+.+.+.+ .+...+.+|||.
T Consensus 497 ~~-~~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 497 SF-IDIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred hc-CCceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 33 34578888888765321 2222 222222221 145789999994
|
|
| >PLN02631 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-15 Score=165.15 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=114.1
Q ss_pred CCCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 317 SATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 317 ~~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
..+..+|||+.+.+|. .+.|+|||+|+|...++.++|+||. .|..|++|.+ ++.++ +..++.
T Consensus 332 ~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g---~~i~V~ 397 (699)
T PLN02631 332 GLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSI---DSLEVS 397 (699)
T ss_pred CCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCC---CeeEEE
Confidence 3556789998887665 3679999999986446789999983 4889999987 54421 013678
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHH------H
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNF------E 465 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~------~ 465 (558)
+.||+|.|..+.....++||||||+||||++|++++......++ ...+++.|+|++|+.+ |.+|.|||..+ .
T Consensus 398 VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l 476 (699)
T PLN02631 398 TEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDI 476 (699)
T ss_pred EECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhh
Confidence 88999977665445578999999999999999999987632111 1235899999999999 99999999863 2
Q ss_pred HcCCccEEEEEEecCCC
Q 008647 466 EEGVISELILAFSREGS 482 (558)
Q Consensus 466 ~~~~~~~~~~a~Sr~~~ 482 (558)
+ ..+.++...+||+++
T Consensus 477 ~-~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 477 S-RLNLRIEAYITREDK 492 (699)
T ss_pred h-cCceEEEEEEcCCCC
Confidence 2 235678889999764
|
|
| >PRK12359 flavodoxin FldB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-14 Score=129.88 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=82.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cc-hHHHHHHHHHHHHHHhCCCeEeec-
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVP- 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~l~~~l~~lGa~~i~~- 78 (558)
.|+++||.+||||.|++|+++..|+..|.... |+|+++||||+||+ .| ++||.+++.++++|.+.||+.+..
T Consensus 45 ~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~d-----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~ 119 (172)
T PRK12359 45 QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLN-----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYW 119 (172)
T ss_pred cCCEEEEEecccCCCcCcHHHHHHHHHHhhCC-----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeE
Confidence 58999999999999999999999999997765 89999999999998 69 899999999999999999987710
Q ss_pred -------------C--c------ccCCCC---CchhHHHHHHHHHHHHHHH
Q 008647 79 -------------L--G------LGDDDQ---CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 79 -------------~--~------~~d~~~---~~~~~~~~W~~~l~~~l~~ 105 (558)
. + ..|+.. -.+++++.|+++|.+.+..
T Consensus 120 ~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~~~~~~ 170 (172)
T PRK12359 120 PTEGYEFTSSKPLTADGQLFVGLALDEVNQYDLSDERIQQWCEQILLEMAE 170 (172)
T ss_pred eCCCcccccceeeEcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHHHHHHh
Confidence 0 0 112222 3679999999998776643
|
|
| >KOG3378 consensus Globins and related hemoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-15 Score=140.31 Aligned_cols=182 Identities=20% Similarity=0.271 Sum_probs=115.2
Q ss_pred CCCCCCChhHHHHhhC--CCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCc
Q 008647 315 FPSATPPIGVFFAAVA--PHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDC 388 (558)
Q Consensus 315 f~~~~~~~~~~l~~~~--p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~ 388 (558)
|.+....+|||+.+.. |++ .-|.||.++....-.+.++|.|+.+. .|++|+|+++ +++|
T Consensus 176 ~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A---------~G~VS~~~H~~~KVG------ 240 (385)
T KOG3378|consen 176 FRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVA---------GGVVSNFVHDNLKVG------ 240 (385)
T ss_pred eeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehh---------chhhHHHhhcccccc------
Confidence 3344557899998753 332 23555555443333678999988553 6999999998 9999
Q ss_pred cEEEEEeeCCCCcCCC---CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 008647 389 SWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 465 (558)
Q Consensus 389 ~~v~v~~p~g~F~lp~---~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~ 465 (558)
|.|.++.|.|.|.... +.++|++++|+|+||||+++|+++.+. -|..| .+...++++.
T Consensus 241 D~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-------------C~~~R------P~~~~~~~~~ 301 (385)
T KOG3378|consen 241 DIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-------------CYSSR------PFKQWLEQLK 301 (385)
T ss_pred ceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh-------------cCCCC------cHHHHHHHHH
Confidence 8999999999998753 456899999999999999999998664 12222 2223333322
Q ss_pred HcC-CccEEEEEEecCCC--CccchhhhhHh--cHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 466 EEG-VISELILAFSREGS--QKEYVQHKMMD--KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 466 ~~~-~~~~~~~a~Sr~~~--~k~yvq~~l~~--~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
.+. .+.++.-.||.+.+ .+.-|...+.. +.+.+-++-...++||.||| .++|+.|...|.++..+
T Consensus 302 ~K~k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 302 LKYKENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 210 01111111222222 22223222221 12233333335789999999 88999999999998754
|
|
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-14 Score=140.90 Aligned_cols=97 Identities=29% Similarity=0.473 Sum_probs=85.8
Q ss_pred cEEEEEeccCCCCCCCccHHHHHHHHhcCCC----CCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeec
Q 008647 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGND----RGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 4 ~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
+.++|+++|+-+|+|| +.-|.+||..... .+.+|.+++||||||||+.| ++||+.|+++|.++..|||.|++|
T Consensus 93 n~~~~lv~~~~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p 170 (601)
T KOG1160|consen 93 NALYFLVLPSYDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFP 170 (601)
T ss_pred ceEEEEEecccCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeee
Confidence 4789999999999999 8889999976433 36789999999999999999 999999999999999999999999
Q ss_pred CcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 79 LGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 79 ~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
+|++|.++ ..+++|...+...|+.
T Consensus 171 ~G~~~~~~---~~id~W~~~~~~~Lk~ 194 (601)
T KOG1160|consen 171 LGEVDMDS---AKIDEWTSLVAETLKD 194 (601)
T ss_pred cCcccccc---ccHHHHHHHHHHHHcC
Confidence 99999884 4455999988888765
|
|
| >PRK06703 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=125.15 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=85.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.|||++||||.|++|+++..|+++|.... +++++|+|||+||+.|++||.+++.++++|+++|++.+.+...
T Consensus 48 ~~d~viigspt~~~g~~p~~~~~f~~~l~~~~-----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~ 122 (151)
T PRK06703 48 AYDGIILGSYTWGDGDLPYEAEDFHEDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLK 122 (151)
T ss_pred cCCcEEEEECCCCCCcCcHHHHHHHHHHhcCC-----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeE
Confidence 47899999999999999999999999997654 7789999999999999999999999999999999999988888
Q ss_pred cCCCCC---chhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQC---IEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~~---~~~~~~~W~~~l~~~l~~ 105 (558)
.+...+ .......|.+++.+.+.+
T Consensus 123 ~~~~p~~~~~~~~~~~~~~~~~~~~~~ 149 (151)
T PRK06703 123 IELAPETDEDVEKCSNFAIAFAEKFAQ 149 (151)
T ss_pred EecCCCchhHHHHHHHHHHHHHHHHHh
Confidence 776653 345677888887766554
|
|
| >TIGR01752 flav_long flavodoxin, long chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=114.85 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=65.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cc-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+|+.+||++||||.|++|+++..|++.|.... +++++++|||+||+ .| ++||.+++.++++|+++||+.+...
T Consensus 44 ~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~-----l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 44 AYDKLILGTPTWGVGELQEDWEDFLPTLEELD-----FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW 118 (167)
T ss_pred hCCEEEEEecCCCCCcCcHHHHHHHHHhhcCC-----CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence 58899999999999999999999999986644 78999999999998 58 7999999999999999999988543
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. |
| >PRK09271 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=112.54 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.++.+||+++|||.|.+|+++..|+++|.... .++++++|||+||+.| ++||.+++.++++|... .+.
T Consensus 51 ~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~ 120 (160)
T PRK09271 51 DYDLYLLGTWTDNAGRTPPEMKRFIAELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPR 120 (160)
T ss_pred cCCEEEEECcccCCCcCCHHHHHHHHHHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCc
Confidence 46899999999999999999999999997743 3567899999999999 89999999999999764 244
Q ss_pred cccCCCCC---chhHHHHHHHHHHHHH
Q 008647 80 GLGDDDQC---IEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 ~~~d~~~~---~~~~~~~W~~~l~~~l 103 (558)
.+.+...+ ....+.+|..++++++
T Consensus 121 l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 121 LKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred eeeecCCccchhHHHHHHHHHHHHHHh
Confidence 55554332 2478899999888776
|
|
| >TIGR01753 flav_short flavodoxin, short chain | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-11 Score=108.40 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=77.0
Q ss_pred CCcEEEEEeccCCCCCCC-ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||+++||+.|.+| ++++.|+++|.... +++++++|||+|++.|+ ||.+++.++++|+++|++++.+..
T Consensus 45 ~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~-----~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~ 118 (140)
T TIGR01753 45 SYDAVLLGCSTWGDEDLEQDDFEPFFEELEDID-----LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGL 118 (140)
T ss_pred cCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCC-----CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCe
Confidence 478999999999999999 99999999997653 78999999999999998 999999999999999999999876
Q ss_pred ccCCCC--CchhHHHHHHHH
Q 008647 81 LGDDDQ--CIEDDFTAWREL 98 (558)
Q Consensus 81 ~~d~~~--~~~~~~~~W~~~ 98 (558)
..+... +.....++|.++
T Consensus 119 ~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 119 KVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred eeecCCCHHHHHHHHHHHHH
Confidence 665544 234445566544
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. |
| >COG0716 FldA Flavodoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=109.80 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=83.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchH-HHHHHHHHHHHHHhCC--CeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQG--GARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~-f~~~~~~l~~~l~~lG--a~~i~~ 78 (558)
.|+.++++++|||.|+.|+++.+|+..+.... +++++||+||+||+.|.. ||.++..+...|+..| +....+
T Consensus 48 ~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~~~-----~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~ 122 (151)
T COG0716 48 SYDELLLGTPTWGAGELPDDWYDFIEELEPID-----FKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILE 122 (151)
T ss_pred cCCEEEEEeCCCCCCcCCccHHHHHHHhcccC-----cCCceEEEEeccccccchHHHHHHHHHHHHHHHcCcccccccc
Confidence 57899999999999999999999999998844 889999999999999987 9999999999999999 666777
Q ss_pred Cccc--CCCC--CchhHHHHHHHHHHHH
Q 008647 79 LGLG--DDDQ--CIEDDFTAWRELVWPE 102 (558)
Q Consensus 79 ~~~~--d~~~--~~~~~~~~W~~~l~~~ 102 (558)
.... |... ..+...+.|.++++..
T Consensus 123 ~~~~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 123 TLGYIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred ccceeccCCCCCccHHHHHHHHHHHHhh
Confidence 6666 3333 5789999999887653
|
|
| >PRK06756 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-11 Score=107.77 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=79.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.|||+++|||.|.+|+++..|++.|.... ++++++++||.|++.|..||.+.+.+.++|.++|++.+.+...
T Consensus 49 ~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~-----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~ 123 (148)
T PRK06756 49 QYDGIILGAYTWGDGDLPDDFLDFYDAMDSID-----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLK 123 (148)
T ss_pred cCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCC-----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeE
Confidence 57899999999999999999999999987654 7899999999999999999999999999999999999988777
Q ss_pred cCCCCCchhHHH---HHHHHHHH
Q 008647 82 GDDDQCIEDDFT---AWRELVWP 101 (558)
Q Consensus 82 ~d~~~~~~~~~~---~W~~~l~~ 101 (558)
..... .+++++ .|.+.+.+
T Consensus 124 ~~~~p-~~~d~~~~~~~~~~~~~ 145 (148)
T PRK06756 124 VELTP-EDEDVEKCLQFGAEFVK 145 (148)
T ss_pred EecCC-CHHHHHHHHHHHHHHHH
Confidence 76554 355554 45444433
|
|
| >TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-11 Score=108.11 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+|+.+||++||||.|.+|+++..|+++|.. ++++|+|||+||+.| ++||.++++++++|++++ +.
T Consensus 50 ~~d~iilgs~t~~~g~~p~~~~~fl~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~ 116 (140)
T TIGR01754 50 NYDLVFLGTWTWERGRTPDEMKDFIAELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PV 116 (140)
T ss_pred hCCEEEEEcCeeCCCcCCHHHHHHHHHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----Cc
Confidence 478899999999999999999999999854 458999999999999 799999999999997762 33
Q ss_pred cccCCCC---CchhHHHHHHHHH
Q 008647 80 GLGDDDQ---CIEDDFTAWRELV 99 (558)
Q Consensus 80 ~~~d~~~---~~~~~~~~W~~~l 99 (558)
.+.+... +....+.+|.+++
T Consensus 117 ~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 117 LKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred eeEecCCcccccHHHHHHHHHHh
Confidence 4444433 2456778898764
|
This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation. |
| >TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=100.49 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=51.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHh
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCK 70 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~ 70 (558)
.++.+++ |+|||+|+.|+.+.+|++.+.. +.+||||.||+.| ++||.+++++.+++..
T Consensus 35 ~~~~vli-TyT~G~G~vP~~~~~Fle~~~n----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 35 DQEFVLI-TYTGGFGAVPKQTISFLNKKHN----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 3566655 9999999999999999988754 5799999999999 9999999999999876
|
Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised. |
| >PRK09267 flavodoxin FldA; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=99.73 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cc-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+|+.+||++|||+.|.+|+++..|++.+.... |++++++|||+||+ .| ++||.+.+.+++.|.+.|++.+...
T Consensus 46 ~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~-----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~ 120 (169)
T PRK09267 46 AYDLLILGIPTWGYGELQCDWDDFLPELEEID-----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHW 120 (169)
T ss_pred hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCC-----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECcc
Confidence 58899999999999999999999998875543 88999999999998 58 8999999999999999998766331
Q ss_pred ---cccC-----------------CC--C-CchhHHHHHHHHHHHH
Q 008647 80 ---GLGD-----------------DD--Q-CIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 ---~~~d-----------------~~--~-~~~~~~~~W~~~l~~~ 102 (558)
++.. .+ + -.+..+++|.++|.+.
T Consensus 121 ~~~gy~~~~~~~~~~~~~~g~~~d~~~~~~~td~~i~~w~~~i~~~ 166 (169)
T PRK09267 121 PTDGYTFEASKAVDDGKFVGLALDEDNQSELTDERIEAWVKQIKPE 166 (169)
T ss_pred CCCCccccccceeeCCEEEEEEecCCCchhhhHHHHHHHHHHHHHH
Confidence 2211 11 1 1367888999887764
|
|
| >PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-09 Score=96.78 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=49.2
Q ss_pred CEEEEccCccccchHHHHHHHHHHhh-cCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC--CccEEEEEEecCCC
Q 008647 409 PIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG--VISELILAFSREGS 482 (558)
Q Consensus 409 plilIa~GtGIAP~~s~l~~~~~~~~-~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~--~~~~~~~a~Sr~~~ 482 (558)
.++|||||+||||++++++++..... ......++.|+|.+|+.+.=..|.++|+++.... ..+++.+.++++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 58999999999999999999887554 1234688999999999883336776665544332 34567777776543
|
; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A. |
| >KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-08 Score=111.00 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=120.4
Q ss_pred CChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cC-CCC-CCC----Ccc
Q 008647 320 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI-PLE-GNG----DCS 389 (558)
Q Consensus 320 ~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~-~G~-~~~----~~~ 389 (558)
..+|||+-+-.|. ++-+||||+|+| .++.+.+.||.. |..|..|.+ +. +.. .+. ...
T Consensus 382 y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~ 448 (646)
T KOG0039|consen 382 YKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFP 448 (646)
T ss_pred CCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCc
Confidence 3578887775565 478999999999 378999999853 888888877 33 111 011 125
Q ss_pred EEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCC------------CCCCeEEEEeccCCCCcccc
Q 008647 390 WAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA------------QLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 390 ~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~------------~~~~i~L~~G~R~~~~d~~y 457 (558)
++.|.||+|.=..+-..-..++|||+|+|+|||.|++++.....+.+. ..+++..+|-||....=..+
T Consensus 449 ~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf 528 (646)
T KOG0039|consen 449 KILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWF 528 (646)
T ss_pred eEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHH
Confidence 799999999432222233467999999999999999999987443221 23567888888877723345
Q ss_pred HHHHHHHHHc---CCccEEEEEEecC----CCC----------------ccchh------hhhHhcHHHHHHhhh---CC
Q 008647 458 EDELNNFEEE---GVISELILAFSRE----GSQ----------------KEYVQ------HKMMDKAAQLWSLLS---KE 505 (558)
Q Consensus 458 ~~el~~~~~~---~~~~~~~~a~Sr~----~~~----------------k~yvq------~~l~~~~~~l~~~~~---~~ 505 (558)
.+.+.+.... +.. .++...+.. +.. +..++ +.-+-+.+.+.+-+. ++
T Consensus 529 ~~~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~ 607 (646)
T KOG0039|consen 529 KGLLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPN 607 (646)
T ss_pred HHHHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCC
Confidence 5555554422 211 233333211 000 01111 001122333333222 12
Q ss_pred --CEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 506 --GYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 506 --~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
.-|+.||| +.|.+.+++...+...
T Consensus 608 ~~vgVf~CGp-~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 608 VRVGVFSCGP-PGLVKELRKLCNDFSS 633 (646)
T ss_pred ceEEEEEeCC-HHHHHHHHHHHHhccc
Confidence 48999999 8999999998887653
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-08 Score=112.88 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=75.5
Q ss_pred CHHHHHHhCCCC--CCChhHHHHhhCCC-----C-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh
Q 008647 307 SLLEVMAEFPSA--TPPIGVFFAAVAPH-----L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 378 (558)
Q Consensus 307 ~~~d~l~~f~~~--~~~~~~~l~~~~p~-----~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~ 378 (558)
+++.+-.+.|.+ ..-+|||+++..+. + .||++||++.+.. .+.++|+|+++ |.+|..|++
T Consensus 804 ~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~ 871 (1028)
T PRK06567 804 KTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKT 871 (1028)
T ss_pred CEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhc
Confidence 344444445542 35699999997431 2 5679999998754 57899999976 999999999
Q ss_pred cCCCCCCCCccEEEEEeeCC-CCcCCCCCCCCEEEEccCccccc
Q 008647 379 AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAP 421 (558)
Q Consensus 379 l~~G~~~~~~~~v~v~~p~g-~F~lp~~~~~plilIa~GtGIAP 421 (558)
+++| +.+.+.||.| .|.++. .+.+++||||+|+||
T Consensus 872 l~~G------d~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 872 LSEN------EKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred CCCC------CEEEEEcccCCCCCCCC--CCeEEEEEccccHHH
Confidence 9999 8999999999 788764 358999999999998
|
|
| >PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-08 Score=86.18 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=62.5
Q ss_pred CcEEEEEeccCCC----CCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEee
Q 008647 3 HSIYLRLTCRYGD----GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 3 ~~~~i~~~sT~G~----G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
...++++++|||+ |+.|+...+|++.+... ...++|||.||+.| ++||.+++.+.+++. ...+
T Consensus 39 ~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n~--------~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l- 106 (134)
T PRK03600 39 DEPYILITPTYGGGGTAGAVPKQVIRFLNDEHNR--------KLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLL- 106 (134)
T ss_pred CCCEEEEEeccCCCCcCCcccHHHHHHHhccccC--------CcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeE-
Confidence 4578999999999 69999999997774332 34899999999999 999999999999976 2122
Q ss_pred cCcccCCCC--CchhHHHHHHHHHHH
Q 008647 78 PLGLGDDDQ--CIEDDFTAWRELVWP 101 (558)
Q Consensus 78 ~~~~~d~~~--~~~~~~~~W~~~l~~ 101 (558)
.+.+-+. ...+.+.+|++++|.
T Consensus 107 --~k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 107 --YRFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred --EEEecCCCHHHHHHHHHHHHHHHh
Confidence 2222222 234556778777755
|
|
| >PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-08 Score=83.05 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=56.0
Q ss_pred CCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 318 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
..+.+|||+.+.++. ...|+|||+|.|.. .+.++|+|+.. ..|.+|+||+++++| +.|.+.
T Consensus 28 ~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~---------~~G~~S~~L~~l~~G------d~v~i~ 91 (99)
T PF00970_consen 28 LDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRY---------PNGRVSRYLHQLKPG------DEVEIR 91 (99)
T ss_dssp -SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEEC---------TTSHHHHHHHTSCTT------SEEEEE
T ss_pred cccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEec---------cCCHHHHHHHhCCCC------CEEEEE
Confidence 346789999998662 24699999999965 67999999964 259999999999999 899999
Q ss_pred eeCCCCc
Q 008647 395 IRPSNFK 401 (558)
Q Consensus 395 ~p~g~F~ 401 (558)
+|.|.|.
T Consensus 92 gP~G~f~ 98 (99)
T PF00970_consen 92 GPYGNFT 98 (99)
T ss_dssp EEESSEE
T ss_pred EcccccC
Confidence 9999885
|
To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A .... |
| >PRK02551 flavoprotein NrdI; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=79.16 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=46.1
Q ss_pred cEEEEEeccC-CCCCCCccHHH------HHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHH
Q 008647 4 SIYLRLTCRY-GDGEPTDNAAR------FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEEL 68 (558)
Q Consensus 4 ~~~i~~~sT~-G~G~~p~n~~~------f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l 68 (558)
..+|+|++|| |.|.+|+++.. ..++|.... ..+..+||||+||++| +.||.+|+++++.+
T Consensus 55 ~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~ 122 (154)
T PRK02551 55 EPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYHD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF 122 (154)
T ss_pred CCEEEEEeeecCCCCCcccCccccchHHHHHHHcchh-----hhhheEEEEeecccHHHHHHHHHHHHHHHHc
Confidence 4678999999 88888876543 333443322 2567899999999999 99999999999764
|
|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.5e-06 Score=86.43 Aligned_cols=91 Identities=14% Similarity=-0.003 Sum_probs=73.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||.++||+.|.+| .+..|+++|.... ++++.+|+||. |..||.+.+.+.++|+++|++.+.+...
T Consensus 300 ~~d~ii~GspT~~~~~~~-~~~~~l~~l~~~~-----~~~K~~a~FGs----ygw~g~a~~~~~~~l~~~g~~~v~~~~~ 369 (394)
T PRK11921 300 KSKAILVGSSTINRGILS-STAAILEEIKGLG-----FKNKKAAAFGS----YGWSGESVKIITERLKKAGFEIVNDGIR 369 (394)
T ss_pred hCCEEEEECCCcCccccH-HHHHHHHHhhccC-----cCCCEEEEEec----CCCccHHHHHHHHHHHHCCCEEccCcEE
Confidence 478999999999999886 4999999998765 78999999997 7668999999999999999999887766
Q ss_pred cCCCC--CchhHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPE 102 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~ 102 (558)
..... +....+++|.+++.+.
T Consensus 370 ~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 370 ELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh
Confidence 65554 2345557777666543
|
|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=79.66 Aligned_cols=92 Identities=9% Similarity=-0.153 Sum_probs=72.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||.++||+.|.+| .+..|++.|.... ++++++++||. |.-+|.+++.+.++|+++|++.+ +..+
T Consensus 304 ~ad~vilGspT~~~~~~p-~~~~fl~~l~~~~-----l~gK~~~vFGS----ygw~g~a~~~~~~~l~~~g~~~~-~~l~ 372 (479)
T PRK05452 304 RSKGVLVGSSTMNNVMMP-KIAGLLEEITGLR-----FRNKRASAFGS----HGWSGGAVDRLSTRLQDAGFEMS-LSLK 372 (479)
T ss_pred hCCEEEEECCccCCcchH-HHHHHHHHhhccC-----cCCCEEEEEEC----CCcCcHHHHHHHHHHHHCCCEEe-ccEE
Confidence 478999999999988877 6999999987765 78999999996 45589999999999999999875 5555
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELD 104 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~ 104 (558)
+.... +..+....+.++|.+++.
T Consensus 373 ~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 373 AKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHh
Confidence 55544 234555667677766554
|
|
| >PRK05569 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00073 Score=60.99 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=55.6
Q ss_pred CCcEEEEEeccCCCCCCC-ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.+||.++||+.|.+| ..+..|++.|.... ++++++++||.+...+ +.+.+.+.+.|.+.|++.+.+
T Consensus 48 ~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~-----~~~K~v~~f~t~g~~~---~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 48 EADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTP-----NENKKCILFGSYGWDN---GEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred hCCEEEEECCCcCCCcCChHHHHHHHHHhhccC-----cCCCEEEEEeCCCCCC---CcHHHHHHHHHHHCCCeEeee
Confidence 578999999999888764 79999999986644 6899999999875443 345677888999999977654
|
|
| >PRK05568 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00079 Score=60.83 Aligned_cols=88 Identities=13% Similarity=-0.008 Sum_probs=60.6
Q ss_pred CCcEEEEEeccCCCCCCC-ccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.++.+||.++||+.|.+| ..+..|++.+... ++++++++||. |++. ..+.+.+.+.|+++|++.+.+.
T Consensus 48 ~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~------~~~k~~~~f~t~G~~~----~~~~~~~~~~l~~~g~~~~~~~ 117 (142)
T PRK05568 48 GADVVALGSPAMGDEVLEEGEMEPFVESISSL------VKGKKLVLFGSYGWGD----GEWMRDWVERMEGYGANLVNEG 117 (142)
T ss_pred hCCEEEEECCccCcccccchhHHHHHHHhhhh------hCCCEEEEEEccCCCC----ChHHHHHHHHHHHCCCEEeCCc
Confidence 578999999999999874 7899999887542 57899999998 3221 2346788888999999877663
Q ss_pred cccCCCC--CchhHHHHHHHHH
Q 008647 80 GLGDDDQ--CIEDDFTAWRELV 99 (558)
Q Consensus 80 ~~~d~~~--~~~~~~~~W~~~l 99 (558)
....... +..+...+|..+|
T Consensus 118 ~~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 118 LIVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred EEEecCCCHHHHHHHHHHHHHH
Confidence 3332222 2334444554443
|
|
| >PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00031 Score=61.53 Aligned_cols=57 Identities=28% Similarity=0.428 Sum_probs=43.9
Q ss_pred cEEEEEeccCCCCC----CCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHH
Q 008647 4 SIYLRLTCRYGDGE----PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEEL 68 (558)
Q Consensus 4 ~~~i~~~sT~G~G~----~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l 68 (558)
...|++++|||.|+ .|....+|.+.-.... .=.+|+|.||+.| +.||.+|+++.+..
T Consensus 39 ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N~~--------~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 39 EPFVLITPTYGFGENDGGVPKQVIRFLENPDNRK--------LLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp S-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHHGG--------GEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred CCEEEEecccCCCCCCCCCCHHHHHHHHHHHHHh--------hheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 35789999999999 9999999877544432 3468999999999 89999999998775
|
The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A. |
| >PRK06242 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=58.68 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=54.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||.++|| .|.+|..++.|.+.+.. +.++++++||.+......+ .+.+.+.|..+|++.+..
T Consensus 43 ~~d~ii~g~pvy-~~~~~~~~~~fl~~~~~-------~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 43 EYDLIGFGSGIY-FGKFHKSLLKLIEKLPP-------VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred HCCEEEEeCchh-cCCcCHHHHHHHHhhhh-------hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 578999999999 58899999999887743 4689999999988765433 788999999999988755
|
|
| >COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0028 Score=55.74 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=59.5
Q ss_pred EEEEEeccCCCC----CCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 5 IYLRLTCRYGDG----EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 5 ~~i~~~sT~G~G----~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
..|+|++|||.| +.|....+| |.... -...--+|.|.|++.| ..||.+|+.+.+++ |---++..
T Consensus 42 pyvlitpTyg~G~~~~~Vp~~vi~F---Ln~~~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~F 110 (141)
T COG1780 42 PYVLITPTYGGGGTVGAVPKQVIRF---LNNEH-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRF 110 (141)
T ss_pred CeEEEeccccCCCccCccCHHHHHH---hcccc-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEE
Confidence 578999999999 889888877 43322 2345578999999999 99999999998764 44333322
Q ss_pred cccCCCCCchhHHHHHHHHHHHH
Q 008647 80 GLGDDDQCIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 ~~~d~~~~~~~~~~~W~~~l~~~ 102 (558)
-+. ...+.-..+.+|+.++|+.
T Consensus 111 EL~-GT~~Dv~~v~~~v~~~~~~ 132 (141)
T COG1780 111 ELL-GTAEDVAAVRKGVTEFWKR 132 (141)
T ss_pred ecc-CCHHHHHHHHHHHHHHHHh
Confidence 111 1112346677888887774
|
|
| >COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=58.55 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=103.1
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEE
Q 008647 333 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 412 (558)
Q Consensus 333 ~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plil 412 (558)
...|.|||.+.... .+++.|-+-+.. ..|.+|.|-.+.++| |+|.+.+|.|.+..++ ....++|
T Consensus 85 ~~~R~YTiR~~d~~-~~e~~vDfVlH~--------~~gpas~WA~~a~~G------D~l~i~GP~g~~~p~~-~~~~~lL 148 (265)
T COG2375 85 PPQRTYTIRAVDAA-AGELDVDFVLHG--------EGGPASRWARTAQPG------DTLTIMGPRGSLVPPE-AADWYLL 148 (265)
T ss_pred CCcccceeeeeccc-ccEEEEEEEEcC--------CCCcchhhHhhCCCC------CEEEEeCCCCCCCCCC-CcceEEE
Confidence 46899999876432 355555443321 269999999999999 9999999999877654 3568999
Q ss_pred EccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhH
Q 008647 413 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMM 492 (558)
Q Consensus 413 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~ 492 (558)
||==|++--+.++|++.- ...+...|.-..+.+ |. .++ .. .....+.... |.+.. +. .++.
T Consensus 149 igDetAlPAIa~iLE~lp-------~~~~~~a~lev~d~a-d~---~~l---~~-~~~l~~~Wl~-r~~~~--~~-~ll~ 209 (265)
T COG2375 149 IGDETALPAIARILETLP-------ADTPAEAFLEVDDAA-DR---DEL---PS-PDDLELEWLA-RDDAP--TE-QLLA 209 (265)
T ss_pred eccccchHHHHHHHHhCC-------CCCceEEEEEeCChH-Hh---hcc---CC-CCceeEEEec-CCCcc--ch-HHHH
Confidence 999999988888887753 233446666666665 44 222 11 2222344433 33211 11 1221
Q ss_pred hcHHHHHHh-hhC-CCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHH--HHHHHHH
Q 008647 493 DKAAQLWSL-LSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK--AESIVKK 546 (558)
Q Consensus 493 ~~~~~l~~~-~~~-~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~--a~~~~~~ 546 (558)
.. +.+. +.. +.++||.|= ..+++.+++.| .++.|++... +..|++.
T Consensus 210 ~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L----~~e~g~dk~~i~a~gYW~~ 259 (265)
T COG2375 210 AA---LAQAALPAGDYYVWIAGE-ASAVKAIRKFL----RNERGFDKSRVRAIGYWRR 259 (265)
T ss_pred HH---HhcccCCCCceEEEEecc-HHHHHHHHHHH----hhhcCCCHHHhhhhhhhhc
Confidence 11 1111 122 369999998 66666555555 4555666543 3345543
|
|
| >PRK07116 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.069 Score=49.36 Aligned_cols=82 Identities=7% Similarity=0.018 Sum_probs=53.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.|+.|||++++|+ |.+|..++.|.+.+ . +.++++++|+. |.+.+ +.+...+.+.+... .+.+-.
T Consensus 76 ~~D~Iiig~Pv~~-~~~p~~v~~fl~~~---~-----l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~---~~~~~~ 140 (160)
T PRK07116 76 EYDVIFLGFPIWW-YVAPRIINTFLESY---D-----FSGKTVIPFATSGGSGI---GNAEKELKKSYPDA---NWKEGR 140 (160)
T ss_pred hCCEEEEECChhc-cccHHHHHHHHHhc---C-----CCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcC---ccccCe
Confidence 4789999999995 88899888887643 2 77899999999 77665 33344444444222 222222
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
..+.+ ..+.++++|++++
T Consensus 141 ~~~~~-~~~~~i~~wl~~~ 158 (160)
T PRK07116 141 LLNGG-ASKEEIKEWINKL 158 (160)
T ss_pred eecCC-CcHHHHHHHHHHc
Confidence 22211 2466899998764
|
|
| >TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.11 Score=49.70 Aligned_cols=73 Identities=12% Similarity=-0.151 Sum_probs=59.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.|||.++|| .|.+|..++.|++++..... ...+.++..++|+.+....-....+...+...|..+|..-+
T Consensus 68 ~aD~ii~GSPty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 68 DYDAIIFGTPTR-FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred HCCEEEEEeccc-ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 478999999999 79999999999999866432 23488999999999887766677777888888899998655
|
This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected. |
| >PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245 | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.0068 Score=51.90 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=4.7
Q ss_pred CHHHHHHhCCC--CCCChhHHHHhhCCCC-----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhc
Q 008647 307 SLLEVMAEFPS--ATPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA 379 (558)
Q Consensus 307 ~~~d~l~~f~~--~~~~~~~~l~~~~p~~-----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l 379 (558)
++++|....|. .+..+|||+-+.+|.+ +.+||||+|+|. ++.+.|.|+. .|..|..|.+.
T Consensus 15 ~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~ 81 (105)
T PF08022_consen 15 DVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHH
Confidence 44455555554 4678999998876754 577999999997 5789998874 37778877774
Q ss_pred C-CC-CCCCCccEEEEEeeCC
Q 008647 380 I-PL-EGNGDCSWAPIFIRPS 398 (558)
Q Consensus 380 ~-~G-~~~~~~~~v~v~~p~g 398 (558)
. .. .+.....++.|.||+|
T Consensus 82 ~~~~~~~~~~~~~v~idGPYG 102 (105)
T PF08022_consen 82 LSESPSKQGNRLRVFIDGPYG 102 (105)
T ss_dssp ---------------TTSTTS
T ss_pred HhhhcccCCCceEEEEECCCC
Confidence 2 11 0001114677778887
|
; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A. |
| >PRK03767 NAD(P)H:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.2 Score=48.12 Aligned_cols=73 Identities=12% Similarity=-0.145 Sum_probs=55.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.|||.++|| .|.+|..++.|++++...-. ...+.++.+++||...+..-.--...+.+...|..+|..-+
T Consensus 69 ~aD~ii~gsPty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 69 DYDAIIFGTPTR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred hCCEEEEEeccc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 478999999999 89999999999999865422 13488999999999776543333445556777788998655
|
|
| >KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.026 Score=59.36 Aligned_cols=61 Identities=30% Similarity=0.534 Sum_probs=55.1
Q ss_pred EEeecCcCc-h-----HHHHHHHHHHHHHHhCCCeEeecCcccCCCC--CchhHHHHHHHHHHHHHHHh
Q 008647 46 VFGLGNRQY-E-----HFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQL 106 (558)
Q Consensus 46 vfGlGds~y-~-----~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~--~~~~~~~~W~~~l~~~l~~~ 106 (558)
|||+||+.| + .|++-.+.+..||.+++|.....+++|++++ +....+..|.-.||++|..-
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 699999999 3 5999999999999999999999999999988 67888999998999988764
|
|
| >PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.12 Score=45.15 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCC
Q 008647 333 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 400 (558)
Q Consensus 333 ~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F 400 (558)
-..|.|||.+.... .+++.|-|.+.. ..|.+|.|..+.++| +.|.|.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~Hg--------~~Gpas~WA~~A~pG------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVLHG--------DEGPASRWARSARPG------DRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE--S--------S--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEECC--------CCCchHHHHhhCCCC------CEEEEeCCCCCC
Confidence 36799999987543 456666554331 138999999999999 999999999877
|
This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A. |
| >TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.1 Score=41.76 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=53.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+||+++.| .|.+|.-.+.|.+|+... .+.++.+++++.| ..+.++...-..+...|..+||..+
T Consensus 65 ~AD~iI~~sP~Y-~~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~ 132 (171)
T TIGR03567 65 QADGVVVATPVY-KASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHI 132 (171)
T ss_pred HCCEEEEECCcc-cCCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccc
Confidence 357899999999 899999999999998432 3888899998888 4565555544568889999999644
|
Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566). |
| >PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.92 Score=41.09 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=54.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
..+.+||++++| .|.+|.-++.|++++.. .....+.++.+++++.|-+.... ..+...+...|..+|+.-+-
T Consensus 70 ~aD~iI~~sP~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 70 EADGIIFASPVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp HSSEEEEEEEEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cCCeEEEeecEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 367899999999 79999999999999974 11234899999999988665533 23556777788889986553
|
5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction |
| >PRK11104 hemG protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.32 Score=45.75 Aligned_cols=42 Identities=14% Similarity=0.020 Sum_probs=35.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLG 50 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlG 50 (558)
.|+.|||.++|| .|.++..+..|.+.... .|+++++++|++|
T Consensus 46 ~yD~vIlGspi~-~G~~~~~~~~fl~~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 46 DYDRVVIGASIR-YGHFHSALYKFVKKHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred HCCEEEEECccc-cCCcCHHHHHHHHHHHH------HhCCCeEEEEEec
Confidence 489999999999 78899999999766532 1789999999998
|
|
| >PRK10569 NAD(P)H-dependent FMN reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.4 Score=40.38 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=54.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
+.+.+||+++.| .|..|.-.+.|++|+.. ..|.++.+++++.| ....+.-..-..+...|..+||..+
T Consensus 66 ~AD~iIi~tP~Y-~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 66 QADGLIVATPVY-KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred HCCEEEEECCcc-CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 467899999999 89999999999999943 24889999999998 5555555554677788889999754
|
|
| >PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.6 Score=40.11 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=47.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
+|+.|++..+.| .|.+|.-+..|.+ +.+ ++|++++.|-. |.+... .+.+.+.+.+ +...+.+-.
T Consensus 73 ~YD~I~lG~PvW-~~~~~~pv~tFL~---~~~-----~~gK~v~~F~T~ggs~~~---~~~~~l~~~~---~~a~i~~g~ 137 (156)
T PF12682_consen 73 DYDTIFLGTPVW-WGTPPPPVRTFLE---QYD-----FSGKTVIPFCTSGGSGFG---NSLEDLKKLC---PGATILEGL 137 (156)
T ss_dssp G-SEEEEEEEEE-TTEE-CHHHHHHH---CTT-----TTTSEEEEEEE-SS--CH---HHHHHHHHH----TTSEE---E
T ss_pred cCCEEEEechHH-cCCCCHHHHHHHH---hcC-----CCCCcEEEEEeeCCCChh---HHHHHHHHHC---CCCEeecCe
Confidence 589999999999 7999998888854 433 78999999955 555442 2233333333 233444433
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
......-.+.++.+|+++|
T Consensus 138 ~~~~~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 138 AINRGSVSEEEIKEWLKKI 156 (156)
T ss_dssp E---S---HHHHHHHHHHT
T ss_pred EEeCCCcCHHHHHHHHHhC
Confidence 3322212678899998764
|
|
| >TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.6 Score=38.35 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=51.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+||+++.| .|.+|.-.+.|++|+.. ..+.++..++++.|..... ...+-..+...|..+|+..+
T Consensus 68 ~AD~iIi~tP~Y-~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 68 SADLLVVGSPVY-RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred HCCEEEEECCcC-cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccc
Confidence 357899999999 79999999999999853 2388999999999765432 22234456677778887654
|
Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model. |
| >PF12724 Flavodoxin_5: Flavodoxin domain | Back alignment and domain information |
|---|
Probab=85.14 E-value=5 Score=36.06 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=37.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR 52 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds 52 (558)
.|+.|||.+++|+ |..|..+.+|.+.+... |.+.++++|..|-+
T Consensus 43 ~yD~vi~gspiy~-g~~~~~~~~fi~~~~~~------l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 43 DYDAVIFGSPIYA-GRIPGEMREFIKKNKDN------LKNKKVALFSVGGS 86 (143)
T ss_pred cCCEEEEEEEEEC-CcCCHHHHHHHHHHHHH------HcCCcEEEEEEeCC
Confidence 5899999999995 89999999999877542 67889999988655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 558 | ||||
| 3qfr_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 1e-114 | ||
| 3qe2_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 1e-114 | ||
| 1amo_A | 615 | Three-Dimensional Structure Of Nadph-Cytochrome P45 | 1e-114 | ||
| 3es9_A | 618 | Nadph-Cytochrome P450 Reductase In An Open Conforma | 1e-113 | ||
| 3qfc_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 (V | 1e-113 | ||
| 1j9z_A | 622 | Cypor-W677g Length = 622 | 1e-113 | ||
| 1ja0_A | 620 | Cypor-W677x Length = 620 | 1e-113 | ||
| 1ja1_A | 622 | Cypor-Triple Mutant Length = 622 | 1e-112 | ||
| 3ojx_A | 622 | Disulfide Crosslinked Cytochrome P450 Reductase Ina | 1e-112 | ||
| 3fjo_A | 637 | Structure Of Chimeric Yh Cpr Length = 637 | 1e-101 | ||
| 3qfs_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 1e-88 | ||
| 3qft_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 5e-88 | ||
| 2bpo_A | 682 | Crystal Structure Of The Yeast Cpr Triple Mutant: D | 5e-65 | ||
| 2bf4_A | 682 | A Second Fmn-Binding Site In Yeast Nadph-Cytochrome | 5e-65 | ||
| 1tll_A | 688 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 2e-62 | ||
| 2qtz_A | 539 | Crystal Structure Of The Nadp+-Bound Fad-Containing | 1e-55 | ||
| 2qtl_A | 539 | Crystal Structure Of The Fad-Containing Fnr-Like Mo | 2e-54 | ||
| 4dqk_A | 391 | Crystal Structure Of The Fad Binding Domain Of Cyto | 9e-54 | ||
| 4dql_A | 393 | Crystal Structure Of The Fad Binding Domain Of Cyto | 3e-53 | ||
| 1f20_A | 435 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 8e-52 | ||
| 1ddg_A | 374 | Crystal Structure Of Sir-Fp60 Length = 374 | 2e-40 | ||
| 1b1c_A | 181 | Crystal Structure Of The Fmn-Binding Domain Of Huma | 6e-21 | ||
| 1gaq_A | 314 | Crystal Structure Of The Complex Between Ferredoxin | 4e-15 | ||
| 3vo2_A | 310 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 2e-14 | ||
| 3vo1_A | 314 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 2e-14 | ||
| 1sm4_A | 296 | Crystal Structure Analysis Of The Ferredoxin-Nadp+ | 7e-14 | ||
| 4af6_A | 308 | Pea Fnr L268v Mutant Length = 308 | 2e-13 | ||
| 3mhp_A | 296 | Fnr-Recruitment To The Thylakoid Length = 296 | 3e-13 | ||
| 1qg0_A | 308 | Wild-type Pea Fnr Length = 308 | 3e-13 | ||
| 1qga_A | 308 | Pea Fnr Y308w Mutant In Complex With Nadp+ Length = | 3e-13 | ||
| 1qfy_A | 308 | Pea Fnr Y308s Mutant In Complex With Nadp+ Length = | 3e-13 | ||
| 1bx0_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 2e-12 | ||
| 1fnb_A | 314 | Refined Crystal Structure Of Spinach Ferredoxin Red | 2e-12 | ||
| 1frq_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 3e-12 | ||
| 1bx1_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 3e-12 | ||
| 4af7_A | 308 | Pea Fnr C266m Mutant Length = 308 | 5e-12 | ||
| 1frn_A | 314 | The Involvement Of Ser96 In The Catalytic Mechanism | 1e-11 | ||
| 2xnc_A | 315 | Crystal Structure Of An Engineered Ferredoxin Nadp | 2e-11 | ||
| 2b5o_A | 402 | Ferredoxin-nadp Reductase Length = 402 | 4e-09 | ||
| 1quf_A | 304 | X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ | 7e-09 | ||
| 1jb9_A | 316 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 1e-08 | ||
| 3lvb_A | 311 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 1e-08 | ||
| 3lo8_A | 311 | Crystal Structure Of The Oxidized Form Of Ferredoxi | 1e-08 | ||
| 1w35_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Leng | 1e-08 | ||
| 1go2_A | 304 | Structure Of Ferredoxin-nadp+ Reductase With Lys 72 | 1e-08 | ||
| 1qgy_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-08 | ||
| 1e64_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-08 | ||
| 1e63_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-08 | ||
| 1gjr_A | 304 | Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By | 1e-08 | ||
| 1e62_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-08 | ||
| 1que_A | 303 | X-Ray Structure Of The Ferredoxin:nadp+ Reductase F | 1e-08 | ||
| 1w34_A | 304 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Lengt | 1e-08 | ||
| 1ogj_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Leu 263 Repl | 1e-08 | ||
| 1gr1_A | 303 | Structure Of Ferredoxin-Nadp+ Reductase With Glu 13 | 1e-08 | ||
| 1b2r_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Leng | 1e-08 | ||
| 1bjk_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Arg 264 Repl | 2e-08 | ||
| 1h85_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Val 136 Repl | 2e-08 | ||
| 2bsa_A | 303 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Compl | 2e-08 | ||
| 1qh0_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutat | 2e-08 | ||
| 1bqe_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 2e-08 | ||
| 1qgz_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 78 Repla | 2e-08 | ||
| 1ewy_A | 303 | Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reduct | 3e-08 | ||
| 2x3u_A | 303 | Ferredoxin-Nadp Reductase Mutant With Tyr 303 Repla | 3e-08 | ||
| 1ogi_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 5e-08 | ||
| 1h42_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 6e-08 | ||
| 2bmw_A | 304 | Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl | 8e-08 | ||
| 2rc5_A | 314 | Refined Structure Of Fnr From Leptospira Interrogan | 1e-07 | ||
| 2vyq_A | 304 | Ferredoxin:nadp Reductase Mutant With Thr 155 Repla | 1e-07 | ||
| 1bvy_F | 191 | Complex Of The Heme And Fmn-Binding Domains Of The | 3e-06 | ||
| 3hr4_A | 219 | Human Inos Reductase And Calmodulin Complex Length | 4e-05 | ||
| 1ykg_A | 167 | Solution Structure Of The Flavodoxin-Like Domain Fr | 5e-05 | ||
| 3jqq_A | 316 | Crystal Structure Of The H286k Mutant Of Ferredoxin | 5e-04 | ||
| 2ok7_A | 316 | Ferredoxin-Nadp+ Reductase From Plasmodium Falcipar | 6e-04 | ||
| 3jqp_A | 316 | Crystal Structure Of The H286l Mutant Of Ferredoxin | 6e-04 |
| >pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618 | Back alignment and structure |
|
| >pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615 | Back alignment and structure |
|
| >pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618 | Back alignment and structure |
|
| >pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|1J9Z|A Chain A, Cypor-W677g Length = 622 | Back alignment and structure |
|
| >pdb|1JA0|A Chain A, Cypor-W677x Length = 620 | Back alignment and structure |
|
| >pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622 | Back alignment and structure |
|
| >pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622 | Back alignment and structure |
|
| >pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637 | Back alignment and structure |
|
| >pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH Domain) Length = 458 | Back alignment and structure |
|
| >pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH DOMAIN And R457h Mutant) Length = 458 | Back alignment and structure |
|
| >pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682 | Back alignment and structure |
|
| >pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682 | Back alignment and structure |
|
| >pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688 | Back alignment and structure |
|
| >pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 Length = 391 | Back alignment and structure |
|
| >pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 In Complex With Nadp+ Length = 393 | Back alignment and structure |
|
| >pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase FadNADP+ Domain At 1.9a Resolution Length = 435 | Back alignment and structure |
|
| >pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 Length = 374 | Back alignment and structure |
|
| >pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human Cytochrome P450 Reductase At 1.93a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314 | Back alignment and structure |
|
| >pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310 | Back alignment and structure |
|
| >pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314 | Back alignment and structure |
|
| >pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296 | Back alignment and structure |
|
| >pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308 | Back alignment and structure |
|
| >pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296 | Back alignment and structure |
|
| >pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308 | Back alignment and structure |
|
| >pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314 | Back alignment and structure |
|
| >pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314 | Back alignment and structure |
|
| >pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314 | Back alignment and structure |
|
| >pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314 | Back alignment and structure |
|
| >pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314 | Back alignment and structure |
|
| >pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315 | Back alignment and structure |
|
| >pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402 | Back alignment and structure |
|
| >pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms Length = 304 | Back alignment and structure |
|
| >pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms Length = 316 | Back alignment and structure |
|
| >pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms - Test Set Withheld Length = 311 | Back alignment and structure |
|
| >pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+ Reductase From Maize Root At 1.05 Angstroms Length = 311 | Back alignment and structure |
|
| >pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Length = 304 | Back alignment and structure |
|
| >pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72 Replaced By Glu (k72e) Length = 304 | Back alignment and structure |
|
| >pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Glu (K75e) Length = 295 | Back alignment and structure |
|
| >pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Gln (K75q) Length = 304 | Back alignment and structure |
|
| >pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Ser (K75s) Length = 304 | Back alignment and structure |
|
| >pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By Cocrystallization Length = 304 | Back alignment and structure |
|
| >pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Arg (K75r) Length = 304 | Back alignment and structure |
|
| >pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms Length = 303 | Back alignment and structure |
|
| >pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Length = 304 | Back alignment and structure |
|
| >pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By Pro (L263p) Length = 303 | Back alignment and structure |
|
| >pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139 Replaced By Lys (E139k) Length = 303 | Back alignment and structure |
|
| >pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Length = 304 | Back alignment and structure |
|
| >pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu (r264e) Length = 295 | Back alignment and structure |
|
| >pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By Leu (V136l) Length = 295 | Back alignment and structure |
|
| >pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed With Nadp Length = 303 | Back alignment and structure |
|
| >pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By Asp And Leu 78 Mutated By Asp Length = 295 | Back alignment and structure |
|
| >pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly (T155g) Length = 295 | Back alignment and structure |
|
| >pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By Asp (L78d) Length = 295 | Back alignment and structure |
|
| >pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase Complex Length = 303 | Back alignment and structure |
|
| >pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By Phe (Y303f) Length = 303 | Back alignment and structure |
|
| >pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303 | Back alignment and structure |
|
| >pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304 | Back alignment and structure |
|
| >pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304 | Back alignment and structure |
|
| >pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314 | Back alignment and structure |
|
| >pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304 | Back alignment and structure |
|
| >pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The Cytochrome P450(Bm-3) Length = 191 | Back alignment and structure |
|
| >pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex Length = 219 | Back alignment and structure |
|
| >pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The Escherichia Coli Sulfite Reductase Length = 167 | Back alignment and structure |
|
| >pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum In Complex With 2'p- Amp Length = 316 | Back alignment and structure |
|
| >pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
| >pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 558 | |||
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 0.0 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 0.0 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 0.0 | |
| 3qfs_A | 458 | CPR, P450R, NADPH--cytochrome P450 reductase; flav | 0.0 | |
| 2qtl_A | 539 | MSR;, methionine synthase reductase; alpha-beta-al | 0.0 | |
| 4dql_A | 393 | Bifunctional P-450/NADPH-P450 reductase; rossmann | 0.0 | |
| 1f20_A | 435 | Nitric-oxide synthase; nitric-xoide synthase, redu | 0.0 | |
| 1ddg_A | 374 | Sulfite reductase (NADPH) flavoprotein alpha- comp | 0.0 | |
| 1fnb_A | 314 | Ferredoxin-NADP+ reductase; oxidoreductase (NADP+( | 1e-105 | |
| 3lo8_A | 311 | Ferredoxin--NADP reductase; electron transport, ox | 1e-104 | |
| 2bmw_A | 304 | Ferredoxin--NADP reductase; oxidoreductase, flavop | 1e-103 | |
| 2rc5_A | 314 | Ferredoxin-NADP reductase; FAD, oxidoreductase; HE | 1e-103 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 9e-99 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 3e-04 | |
| 3jqq_A | 316 | Ferredoxin NADP reductase; FAD, oxidoreductase; HE | 2e-92 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 8e-38 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 6e-35 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 9e-35 | |
| 2hna_A | 147 | Protein MIOC, flavodoxin; alpha-beta sandwich, fla | 6e-29 | |
| 1f4p_A | 147 | Flavodoxin; electron transport, flavoprotein, FMN, | 7e-18 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 1e-11 | |
| 1tvc_A | 250 | Methane monooxygenase component C, methane monooxy | 2e-11 | |
| 2fcr_A | 173 | Flavodoxin; electron transport; HET: FMN; 1.80A {C | 1e-10 | |
| 1krh_A | 338 | Benzoate 1,2-dioxygenase reductase; alpha-beta, FA | 8e-09 | |
| 1cqx_A | 403 | Flavohemoprotein; globin fold, six-stranded antipa | 8e-09 | |
| 1qfj_A | 232 | Protein (flavin reductase); riboflavin, ferredoxin | 1e-08 | |
| 2wc1_A | 182 | Flavodoxin; electron transport, flavoprotein; HET: | 1e-08 | |
| 1gvh_A | 396 | Flavohemoprotein; oxidoreductase, NADP, heme, flav | 2e-08 | |
| 2r6h_A | 290 | NADH:ubiquinone oxidoreductase, Na translocating, | 2e-07 | |
| 1yob_A | 179 | Flavodoxin 2, flavodoxin II; alpha-beta fold, non- | 5e-06 | |
| 2bgi_A | 272 | Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi | 8e-06 | |
| 2qdx_A | 257 | Ferredoxin reductase; oxidoreductase; HET: FAD; 1. | 2e-05 | |
| 1fdr_A | 248 | Flavodoxin reductase; ferredoxin reductase, flavin | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 | |
| 4fk8_A | 271 | Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st | 1e-04 | |
| 2cnd_A | 270 | NADH-dependent nitrate reductase; nitrate assimila | 8e-04 |
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618 | Back alignment and structure |
|---|
Score = 723 bits (1869), Expect = 0.0
Identities = 221/548 (40%), Positives = 317/548 (57%), Gaps = 13/548 (2%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
YG+G+PTDNA FY W E + L +KF VFGLGN+ YEHFN +G +D+ L + G
Sbjct: 81 YGEGDPTDNAQDFYDWLQETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLG 137
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIH 132
R+ LGLGDDD +E+DF WRE W + + E S + + +
Sbjct: 138 AQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIR-QYELVVHTDIDA 196
Query: 133 GPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITY 192
+ + N FD +P V R+L++ ++R +HLE D+S + I Y
Sbjct: 197 AKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQG-TERHLMHLELDISDSKIRY 255
Query: 193 ETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRT 252
E+GDHV VY N V + GK+LG L+++ SL+ +E+ + PFP P + RT
Sbjct: 256 ESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKK-----HPFPCPTSYRT 310
Query: 253 ALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSP--QGKDDYSQWVVASQRSLLE 310
AL Y DI NPPR L LA +A+EPSE E L+ ++S +GK+ Y WVV ++R +L
Sbjct: 311 ALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILA 370
Query: 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKG 370
++ + PS PPI + P LQ RYYSI+SS + P+ VH+ +V T GRI+KG
Sbjct: 371 ILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKG 429
Query: 371 VCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERM 430
V + W++ P+ NG + P+F+R S F+LP + P+IMVGPGTG+APF GF+QER
Sbjct: 430 VATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERA 489
Query: 431 ALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHK 490
L+Q G ++G LL++GCR D++Y +EL F +G +++L +AFSRE S K YVQH
Sbjct: 490 WLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHL 549
Query: 491 MMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQME 550
+ LW L+ ++YVCGDA+ MARDV T + IV E ++ ++A +KK +
Sbjct: 550 LKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTK 609
Query: 551 GRYLRDVW 558
GRY DVW
Sbjct: 610 GRYSLDVW 617
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688 | Back alignment and structure |
|---|
Score = 648 bits (1674), Expect = 0.0
Identities = 176/598 (29%), Positives = 272/598 (45%), Gaps = 63/598 (10%)
Query: 13 YGDGEPTDNAARFYKWFTE---------------------------------------GN 33
+G+G+P +N +F E
Sbjct: 68 FGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNF 127
Query: 34 DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 93
+ L ++F VFGLG+R Y HF G +D L + GG R++ + GD+ E+ F
Sbjct: 128 ESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFR 187
Query: 94 AWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASF 153
W + V+ + DD N + P + I R + V ++ G ++
Sbjct: 188 TWAKKVFKAACDVFCVGDDVN-IEKPNNSLISNDRSWKRNKFRLTYVAEAPDLTQGLSNV 246
Query: 154 DIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEA 212
+ R+ L P S RS I + +G + Y+ GDH+GV+ N ++ V
Sbjct: 247 HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNAL 306
Query: 213 GKLLGQS--LELLFSLHTDNEDGTPRG---SSLTPPFPGPCTLRTALARYADILNPPRKA 267
+ L + + + E T G + PCT+ A Y DI PP
Sbjct: 307 IERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPL 366
Query: 268 ALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFA 327
L A+ AT E +RL L +G +Y +W +++EV+ EFPS P +
Sbjct: 367 QLQQFASLATNEKEKQRLLVL--SKGLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLT 424
Query: 328 AVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGN 385
+ LQPRYYSISSSP PD VH+T A+V T G +H GVCS+W+
Sbjct: 425 QL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA---- 479
Query: 386 GDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMA-LKQDGAQLGPAL 443
P F+R + +F LP NP VP I+VGPGTG+APFR F Q+R ++ G P +
Sbjct: 480 --DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMV 537
Query: 444 LFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDKAAQ-LWSL 501
L FGCR ++D IY +E + +GV EL A+SRE + K+YVQ + ++ A+ ++
Sbjct: 538 LVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRA 597
Query: 502 LSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
L ++G ++YVCGD MA DV + + I+ +Q + A + + + + RY D++
Sbjct: 598 LKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682 | Back alignment and structure |
|---|
Score = 647 bits (1671), Expect = 0.0
Identities = 174/591 (29%), Positives = 273/591 (46%), Gaps = 54/591 (9%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 68
YG+G+ D A F + N L L++ +FGLGN YE FN ++ L
Sbjct: 105 FISTYGEGDFPDGAVNFEDFIC--NAEAGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHL 162
Query: 69 CKQGGARLVPLGLGDDDQC-IEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPE- 126
G RL LG DD ++D+ AW++ + L L ++ ++ + +
Sbjct: 163 SAAGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAKFTSQFQYTVLNE 222
Query: 127 -----YRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHL 181
+ S N + FD+ P + REL +DR+CIH
Sbjct: 223 ITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSRELFSS-NDRNCIHS 281
Query: 182 EFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241
EFD+SG+ I Y TGDH+ V+ N E VE+ + E +F L P ++
Sbjct: 282 EFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK-------PLDPTVK 334
Query: 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWV 301
PFP P T+ A+ Y +I P + +L A E+L LS KD ++ +
Sbjct: 335 VPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSK--DKDQFAVEI 392
Query: 302 VASQRSLLEVMAEFPSATPPIGV---FFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALV 358
+ ++ + + V F P + PRYYSISSS VHVT +
Sbjct: 393 TSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVE 452
Query: 359 YGPTPT---GRIHKGVCSTWMKNAIPLEGNGDCSW--------------------APIFI 395
P P GV + ++N + N + + P+ +
Sbjct: 453 NFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHV 512
Query: 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQ------LGPALLFFGCR 449
R SNF+LP+NPS P+IM+GPGTG+APFRGF++ER+A + + LG +LF+G R
Sbjct: 513 RRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSR 572
Query: 450 NRRMDFIYEDELNNFEEE-GVISELILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGY 507
N DF+Y+DE + ++ E+++A SR ++K YVQ K+ D Q++ +++ +
Sbjct: 573 NTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAF 631
Query: 508 LYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+YVCGDAKGMA+ V L I+ +++ + +A ++K + GRY DVW
Sbjct: 632 IYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* Length = 458 | Back alignment and structure |
|---|
Score = 628 bits (1623), Expect = 0.0
Identities = 179/457 (39%), Positives = 263/457 (57%), Gaps = 14/457 (3%)
Query: 109 DEDDANTVSTPYTAAIPEYRVMIHGPTVTSSV-----DNYSNMPNGNASFDIHHPCRVNV 163
+ V +I +Y +++H + V + N FD +P V
Sbjct: 8 HHHSSGLVPRGSHMSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAV 67
Query: 164 AVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELL 223
R+L+ ++R +HLE D+S + I YE+GDHV VY N V + GK+LG L+++
Sbjct: 68 TTNRKLN-QGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVV 126
Query: 224 FSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAE 283
SL+ +E+ + PFP P + RTAL Y DI NPPR L LA +A+EPSE E
Sbjct: 127 MSLNNLDEESNKK-----HPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQE 181
Query: 284 RLKFLSSP--QGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSIS 341
L+ ++S +GK+ Y WVV ++R +L ++ + PS PPI + P LQ RYYSI+
Sbjct: 182 LLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPID-HLCELLPRLQARYYSIA 240
Query: 342 SSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFK 401
SS + P+ VH+ +V T GRI+KGV + W++ P+ NG + P+F+R S F+
Sbjct: 241 SSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFR 300
Query: 402 LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDEL 461
LP + P+IMVGPGTG+APF GF+QER L+Q G ++G LL++GCR D++Y +EL
Sbjct: 301 LPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREEL 360
Query: 462 NNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDV 521
F +G +++L +AFSRE S K YVQH + LW L+ ++YVCGDA+ MARDV
Sbjct: 361 AQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDV 420
Query: 522 HRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
T + IV E ++ ++A +KK +GRY DVW
Sbjct: 421 QNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539 | Back alignment and structure |
|---|
Score = 610 bits (1575), Expect = 0.0
Identities = 152/543 (27%), Positives = 254/543 (46%), Gaps = 35/543 (6%)
Query: 43 KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 102
+FG + + + + L + R G D + ++ + + V E
Sbjct: 4 EFGALPVASPASLRTDLVKSELLHIESQVELLRFDDSGRKDSEVLKQNAVNSNQSNVVIE 63
Query: 103 L--DQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCR 160
L R + S PEY + ++ + + +
Sbjct: 64 DFESSLTRSVPPLSQASLNIPGLPPEYLQVHLQESLGQE-------ESQVSVTSADPVFQ 116
Query: 161 VNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSL 220
V ++ +L D+ ++ + +E D+S T +Y+ GD V N D V+ + L
Sbjct: 117 VPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLED 176
Query: 221 ELLFSLHTDNEDGTP-RGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEP 279
+ + + T +G++L P C+L+ +I P+KA L AL + ++
Sbjct: 177 KREHCVLLKIKADTKKKGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDS 236
Query: 280 SEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYS 339
+E RL+ L S QG DYS++V + LL+++ FPS PP+ + + P LQPR YS
Sbjct: 237 AEKRRLQELCSKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHL-PKLQPRPYS 295
Query: 340 ISSSPRFAPDRVHVTCALVYGPTP--TGRIHKGVCSTWMKNAIPLEGNGDCSWA------ 391
+SS F P ++H +V + T + KGVC+ W+ + + +
Sbjct: 296 CASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGK 355
Query: 392 ------PIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPA 442
IF R +N F LP +PS+PIIMVGPGTG+APF GFLQ R L++ G
Sbjct: 356 ALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAM 415
Query: 443 LLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSRE------GSQKEYVQHKMMDKAA 496
LFFGCR++ D+++ EL +F + G+++ L ++FSR+ + +YVQ +
Sbjct: 416 WLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQ 475
Query: 497 QLWS-LLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLR 555
Q+ LL + G++YVCGDAK MA+DVH L I+ ++ V+ +A + + E RYL+
Sbjct: 476 QVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQ 535
Query: 556 DVW 558
D+W
Sbjct: 536 DIW 538
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393 | Back alignment and structure |
|---|
Score = 547 bits (1413), Expect = 0.0
Identities = 137/406 (33%), Positives = 204/406 (50%), Gaps = 19/406 (4%)
Query: 155 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGK 214
+H NV +EL +P S RS HLE ++ +Y+ GDH+GV N + V
Sbjct: 3 MHGAFSTNVVASKELQQPGSARSTRHLEIELPKEA-SYQEGDHLGVIPRNYEGIVNRVTA 61
Query: 215 LLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAA 274
G L + E P ++ L +Y ++ +P + L A+AA
Sbjct: 62 RFGLDASQQIRLEAEEEKLAH------LPLAKTVSVE-ELLQYVELQDPVTRTQLRAMAA 114
Query: 275 HATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQ 334
P L+ L K Y + V+A + ++LE++ ++P+ F A + P ++
Sbjct: 115 KTVCPPHKVELEALLE---KQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALL-PSIR 170
Query: 335 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPI 393
PRYYSISSSPR + +T ++V G +G +KG+ S ++ GD I
Sbjct: 171 PRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE----GDTITCFI 226
Query: 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRM 453
S F LP +P P+IMVGPGTG+APFRGF+Q R LK+ G LG A L+FGCR+
Sbjct: 227 STPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHE 286
Query: 454 DFIYEDELNNFEEEGVISELILAFSRE-GSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCG 512
D++Y++EL N + EG+I+ L AFSR K YVQH M +L LL + + Y+CG
Sbjct: 287 DYLYQEELENAQSEGIIT-LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICG 345
Query: 513 DAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
D MA V TL + V + A +++ + +GRY +DVW
Sbjct: 346 DGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVW 391
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435 | Back alignment and structure |
|---|
Score = 547 bits (1412), Expect = 0.0
Identities = 141/434 (32%), Positives = 216/434 (49%), Gaps = 23/434 (5%)
Query: 138 SSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGD 196
+ V ++ G ++ + R+ L P S RS I + +G + Y+ GD
Sbjct: 10 TYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGD 69
Query: 197 HVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRG---SSLTPPFPGPCTLR 251
H+GV+ N ++ V + L + + + E T G + PCT+
Sbjct: 70 HLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIF 129
Query: 252 TALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311
A Y DI PP L A+ AT E +RL L +G +Y +W +++EV
Sbjct: 130 QAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVL--SKGLQEYEEWKWGKNPTMVEV 187
Query: 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHK 369
+ EFPS P + + LQPRYYSISSSP PD VH+T A+V T G +H
Sbjct: 188 LEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHH 246
Query: 370 GVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQE 428
GVCS+W+ P F+R + +F LP NP VP I+VGPGTG+APFR F Q+
Sbjct: 247 GVCSSWLNRIQA------DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQ 300
Query: 429 R-MALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEY 486
R ++ G P +L FGCR ++D IY +E + +GV EL A+SRE + K+Y
Sbjct: 301 RQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKY 360
Query: 487 VQHKMMDKAAQ-LWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 544
VQ + ++ A+ ++ L ++G ++YVCGD MA DV + + I+ +Q + A +
Sbjct: 361 VQDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFI 419
Query: 545 KKFQMEGRYLRDVW 558
+ + + RY D++
Sbjct: 420 SRLRDDNRYHEDIF 433
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374 | Back alignment and structure |
|---|
Score = 519 bits (1339), Expect = 0.0
Identities = 115/409 (28%), Positives = 200/409 (48%), Gaps = 39/409 (9%)
Query: 151 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVE 210
+ + P +++V +++ +S++ H+E D+ +G+ Y+ GD +GV+ +N V+
Sbjct: 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63
Query: 211 EAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALI 270
E +LL + ++ L AL + ++
Sbjct: 64 ELVELLWLKGDEPVTVE-----------------GKTLPLNEALQWHFELTVNTANI--- 103
Query: 271 ALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVA 330
+ +AT L + Y A+ +++++ F A +
Sbjct: 104 -VENYATLTRSETLLPLVGDKAKLQHY-----AATTPIVDMV-RFSPAQLDAEALINLL- 155
Query: 331 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSW 390
L PR YSI+SS + VHVT +V GR G S+++ + + EG
Sbjct: 156 RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG-----E 209
Query: 391 APIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCR 449
+FI + NF+LPANP P+IM+GPGTG+APFR F+Q+R A + G LFFG
Sbjct: 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNP 265
Query: 450 NRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLY 509
+ DF+Y+ E + +EGV++ + LA+SR+ +K YVQ K+ ++ A+LW ++ ++Y
Sbjct: 266 HFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIY 325
Query: 510 VCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
VCGDA MA+DV + L ++ E +D+ A+ + + ++E RY RDV+
Sbjct: 326 VCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314 | Back alignment and structure |
|---|
Score = 318 bits (816), Expect = e-105
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 24/256 (9%)
Query: 314 EFPSATPPIGVFFAAVAPHLQPRYYSISSSP---RFAPDRVHVTCALVYGPTPTGRIHKG 370
E S PH + R YSI+SS V + + G KG
Sbjct: 72 EGQSVGVIPDGEDKNGKPH-KLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKG 130
Query: 371 VCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFLQER 429
VCS ++ + P + +P +P+ IIM+G GTG+APFR FL +
Sbjct: 131 VCSNFLCDLKPGAE------VKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKM 184
Query: 430 MALKQDGAQL-GPALLFFGCRNRRMDFIYEDELNNFEEEGVIS-ELILAFSRE----GSQ 483
K D + G A LF G +Y++E +E+ + L A SRE +
Sbjct: 185 FFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGE 243
Query: 484 KEYVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAES 542
K Y+Q +M A +LW +L K+ Y+Y+CG KGM + + + ++ +
Sbjct: 244 KMYIQTRMAQYAVELWEMLKKDNTYVYMCG-LKGMEKGIDDIMVSLAAAEG----IDWIE 298
Query: 543 IVKKFQMEGRYLRDVW 558
++ + ++ +V+
Sbjct: 299 YKRQLKKAEQWNVEVY 314
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311 | Back alignment and structure |
|---|
Score = 314 bits (807), Expect = e-104
Identities = 67/329 (20%), Positives = 119/329 (36%), Gaps = 43/329 (13%)
Query: 247 PCTLRTALARYADILNP--PRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVAS 304
P L +A + P P A ++++ + + E + G Y +
Sbjct: 9 PLHLESAKEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEG---- 64
Query: 305 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALV----YG 360
+ P G R YSI+S+ V Y
Sbjct: 65 --------QSYGVIPP--GENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYY 114
Query: 361 PTPT---GRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPA-NPSVPIIMVGP 415
T GVCS ++ N+ P + + LP +P+ IM+
Sbjct: 115 DPETGKEDPSKNGVCSNFLCNSKPGDK------IQLTGPSGKIMLLPEEDPNATHIMIAT 168
Query: 416 GTGLAPFRGFLQERMALKQDGAQL-GPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SEL 473
GTG+APFRG+L+ + G A LF G N +Y++E ++ ++
Sbjct: 169 GTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRY 227
Query: 474 ILAFSREGSQ----KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529
A SRE K YVQ K+ + + +++ LL ++Y CG KGM + TL +
Sbjct: 228 DKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVA 286
Query: 530 QEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+ + + + + + ++ +V+
Sbjct: 287 ERRGE----SWDQKLAQLKKNKQWHVEVY 311
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304 | Back alignment and structure |
|---|
Score = 313 bits (803), Expect = e-103
Identities = 58/287 (20%), Positives = 101/287 (35%), Gaps = 30/287 (10%)
Query: 288 LSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSP--- 344
L G L+ + I + R YSI+S+
Sbjct: 32 LVKEGGIGIVQHIKFDLTGGNLKYIEGQS--IGIIPPGVDKNGKPEKLRLYSIASTRHGD 89
Query: 345 RFAPDRVHVTCALV-YGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKL 402
+ + + Y +G GVCST++ + P G I L
Sbjct: 90 DVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP----GS--EVKITGPVGKEMLL 143
Query: 403 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQL-----GPALLFFGCRNRRMDFIY 457
P +P +IM+ GTG+ P R +L + A G + L FG + +Y
Sbjct: 144 PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILY 202
Query: 458 EDELNNFEEEGVIS-ELILAFSREGSQ----KEYVQHKMMDKAAQLWSLLSKEG-YLYVC 511
++EL +++ + L A SRE + Y+Q ++ + A QLW L+ + + Y+C
Sbjct: 203 KEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYIC 262
Query: 512 GDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
G M + L ++ K + GR+ + +
Sbjct: 263 GP-PPMEEGIDAALSAAAAKEGV----TWSDYQKDLKKAGRWHVETY 304
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314 | Back alignment and structure |
|---|
Score = 312 bits (801), Expect = e-103
Identities = 57/258 (22%), Positives = 89/258 (34%), Gaps = 24/258 (9%)
Query: 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSP---RFAPDRVHVTCALVYGPTPTGRIH 368
P P R YSI+S D + G I
Sbjct: 70 GGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQ 129
Query: 369 -KGVCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPAN-PSVPIIMVGPGTGLAPFRGF 425
KGVCS +M + P + + F LP S I+ + GTG+APF G
Sbjct: 130 FKGVCSNYMCDLKPGDE------VTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGM 183
Query: 426 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-- 483
+E + K G L +G + + D L E + +LI A SRE
Sbjct: 184 SEELLEHKLIKFT-GNITLVYGAPYSD-ELVMMDYLKGLESKHKNFKLITAISREEKNSF 241
Query: 484 ---KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540
+ Y+ H++ ++A + +L+ G Y+CG KGM + V + I
Sbjct: 242 DGGRMYISHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGT-----Y 296
Query: 541 ESIVKKFQMEGRYLRDVW 558
E + + + +
Sbjct: 297 EEFKHHLEGAHQLFVETY 314
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 | Back alignment and structure |
|---|
Score = 304 bits (780), Expect = 9e-99
Identities = 67/324 (20%), Positives = 112/324 (34%), Gaps = 29/324 (8%)
Query: 247 PCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 306
+ + + P E L G
Sbjct: 96 MASSTKIVHPKTTDTSVPVNIYRPKTPFLGKCIENYE----LVDEGGSGTVRHVTFDISE 151
Query: 307 SLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR---FAPDRVHVTCALV-YGPT 362
L + E S PH + R YSI+S+ V + + Y
Sbjct: 152 GDLRYL-EGQSIGIIPPGEDKNGKPH-KLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDP 209
Query: 363 PTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAP 421
+G GVCST++ N I LP + ++M+ GTG+AP
Sbjct: 210 ESGETVYGVCSTYLCNLPVGT-----DDVKITGPVGKEMLLPDDEDATVVMLATGTGIAP 264
Query: 422 FRGFLQERMALKQDGAQL-GPALLFFGCRNRRMDFIYEDELNNFEEEGVIS-ELILAFSR 479
FR FL + + + G A L FG + +Y+D+ E + L A SR
Sbjct: 265 FRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAAENPDNFRLTYAISR 323
Query: 480 EGSQ----KEYVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIVQEQEN 534
E K YVQ ++ + A +L+ ++ K ++Y+CG KGM + T +++
Sbjct: 324 EQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRG- 381
Query: 535 VDSSKAESIVKKFQMEGRYLRDVW 558
E + + + E R+ +V+
Sbjct: 382 ---LNWEEMRRSMKKEHRWHVEVY 402
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 29/199 (14%), Positives = 46/199 (23%), Gaps = 31/199 (15%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 68
+T A R + + G G + V G + +
Sbjct: 4 ITSTANSTGNQSYANRLFIYEVVG--LGGDGRNENSLVRKSGTTFITVPYARMNQEMQRI 61
Query: 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYR 128
K GG + ED E + + P T
Sbjct: 62 TKLGGKI-------VSIRPAEDAAQIVSEGQSSAQASAQSPMASSTKIVHPKTTDTSVP- 113
Query: 129 VMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT 188
V I+ P P EL + H+ FD+S
Sbjct: 114 VNIYRPK---------------------TPFLGKCIENYELVDEGGSGTVRHVTFDISEG 152
Query: 189 GITYETGDHVGVYVENCDE 207
+ Y G +G+ D+
Sbjct: 153 DLRYLEGQSIGIIPPGEDK 171
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316 | Back alignment and structure |
|---|
Score = 285 bits (730), Expect = 2e-92
Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 37/269 (13%)
Query: 305 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT 364
Q + + + T + + + R YSISSS V +
Sbjct: 70 QINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNMENLSVAIKIHKYEQTENA 129
Query: 365 -GRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANP---SVPIIMVGPGTGLA 420
+ G CS ++KN D + F LP + + I + GTG++
Sbjct: 130 PNITNYGYCSGFIKNLKI----ND--DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGIS 183
Query: 421 PFRGFLQERMA------LKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS-EL 473
P+ FL++ A ++ G +++G N +Y +EL F++ + +
Sbjct: 184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNELEYFQKMYPNNINI 242
Query: 474 ILAFSRE---GSQKEYVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMARDVHRTLHTIV 529
FS + + YVQ ++ + + +L + LY+CG K + V L
Sbjct: 243 HYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDIL---- 297
Query: 530 QEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+ + D K + R +V+
Sbjct: 298 KSHDQFDEKK----------KKRVHVEVY 316
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Length = 191 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 8e-38
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQ 71
+G P DNA +F W ++ +++ VFG G++ + + K+ +DE L +
Sbjct: 77 SYNGHPPDNAKQFVDWLD--QASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAK 134
Query: 72 GGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL-----RDEDDANTVSTPY 120
G + G D E + WRE +W ++ ED+ +T+S +
Sbjct: 135 GAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQF 188
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Length = 167 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 6e-35
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
G+GEP + A +K+ + + P L+ F VF LG+ YE F + G D +L + G
Sbjct: 67 QGEGEPPEEAVALHKFLF--SKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELG 124
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVS 117
G RL+ D + + + WR V L + +V+
Sbjct: 125 GERLLDRVDADVE--YQAAASEWRARVVDALKSRAPVAAPSQSVA 167
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 9e-35
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
+G+G+ N + K + + ++ VFGLG+ Y F +D++L G
Sbjct: 97 FGNGDCPGNGEKLKKSLFMLKE---LNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLG 153
Query: 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL-RDEDDANTVSTPYTAAI----PEY 127
++L P+G GD+ ED F +W + + + YT+ + Y
Sbjct: 154 ASQLTPMGEGDELSGQEDAFRSWAVQTFKAACETFDVRGKQHIQIPKLYTSNVTWDPHHY 213
Query: 128 RV 129
R+
Sbjct: 214 RL 215
|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Length = 147 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-29
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
+G G+ DN + FY+ ++ P L ++FG G+G+R+Y+ F L+ EL G
Sbjct: 57 HGAGDIPDNLSPFYEAL---QEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSG 113
Query: 73 GARLVPLGLGD--DDQCIEDDFTAWRELVWPEL 103
+ + D ED W L
Sbjct: 114 AKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146
|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Length = 147 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 7e-18
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
E D+ + Q K FG G+ +E+F ++E+L G
Sbjct: 61 DDSIELQDDFIPLFDSL-----EETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLG 115
Query: 73 GARLVPLGLGDDD-QCIEDDFTAWRELVWPEL 103
+ D D + DD W V +
Sbjct: 116 AEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-11
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
D E D+ ++ F L K F G+++YEHF ++E + G
Sbjct: 62 MEDLEMQDDFLSLFEEFDRIG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELG 116
Query: 73 GARLVPLGLGD-DDQCIEDDFTAWRELVWPEL 103
+ + D + ++ E V +L
Sbjct: 117 ATIIAEGLKMEGDASNDPEAVASFAEDVLKQL 148
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-11
Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 43/203 (21%)
Query: 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA------IPLEGNGD 387
R YS ++ P R+ ++ G S +++N + ++G
Sbjct: 59 VSRSYSPANLPN-PEGRLEFLIRVLPE---------GRFSDYLRNDARVGQVLSVKG--- 105
Query: 388 CSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFF 446
P F L P V GTGLAP +++ ++F
Sbjct: 106 ---------PLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP----NETRIYF 152
Query: 447 GCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKE----YVQHKMMDKAAQLWSLL 502
G + Y DEL + E + E + + +
Sbjct: 153 GVNTEP-ELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLESSDA-- 209
Query: 503 SKEGYLYVCGDAKGMARDVHRTL 525
+Y+CG GM +
Sbjct: 210 --NPDIYLCG-PPGMIDAACELV 229
|
| >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Length = 173 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 27/117 (23%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCK 70
+ G T+ + + F ++ L +FGLG+ + ++F + + K
Sbjct: 56 WNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAK 115
Query: 71 QGGARLVP-------------------LGLGDDDQCIEDDFT-----AWRELVWPEL 103
QG + LGL D + W E V E
Sbjct: 116 QGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVN-DQIPMEKRVAGWVEAVVSET 171
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 61/296 (20%), Positives = 93/296 (31%), Gaps = 58/296 (19%)
Query: 252 TALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQW--VVASQRSLL 309
D L P LA S+A SS K + +A +L
Sbjct: 61 PEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEVCKTKIHHFEGTLARVENLS 120
Query: 310 EVMAEF----PSATPPIGVFFA------AVAPHLQPRYYSISSSPRFAPDRVHVTCALVY 359
+ F P I F A + + R YS SS P V
Sbjct: 121 DSTITFDIQLDDGQPDIH-FLAGQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVR----- 174
Query: 360 GPTPTGRIHKGVCSTWMKNA------IPLEG-NGDCSWAPIFIRPSNFKLPANPSVPIIM 412
+ +G S ++ + G G ++R P++M
Sbjct: 175 ------NVPQGKMSEYLSVQAKAGDKMSFTGPFGSF-----YLRDVK--------RPVLM 215
Query: 413 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472
+ GTG+APF LQ L+Q G++ P L FG D + ++L+ +++ E
Sbjct: 216 LAGGTGIAPFLSMLQ---VLEQKGSE-HPVRLVFGVTQDC-DLVALEQLDALQQKLPWFE 270
Query: 473 LILAFSREGSQ---KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL 525
+ SQ K YV + E +Y+CG M V L
Sbjct: 271 YRTVVAHAESQHERKGYVTGHIEYDWLNG-----GEVDVYLCG-PVPMVEAVRSWL 320
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 51/300 (17%), Positives = 90/300 (30%), Gaps = 44/300 (14%)
Query: 250 LRTALARYADILNPPR-----KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVAS 304
L A+ A LA + P G + +V+
Sbjct: 102 LLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMESELYERSAEQPGGWKGWRTFVIRE 161
Query: 305 QRSLLEVMAEF------PSATPP------IGV-FFAAVAPHLQPRYYSISSSPRFAPDRV 351
+R +V+ F V Q R YS+S P R+
Sbjct: 162 KRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRI 221
Query: 352 HVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP--SNFKLPANPSVP 409
V G G S + + + + GD + + +F + + P
Sbjct: 222 SVK------REGGGPQPPGYVSNLLHDHVNV---GD----QVKLAAPYGSFHIDVDAKTP 268
Query: 410 IIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV 469
I+++ G GL P L ++AL+ + G RN D L +
Sbjct: 269 IVLISGGVGLTPMVSML--KVALQAPPR---QVVFVHGARNSA-VHAMRDRLREAAKTYE 322
Query: 470 ISELILAFSREGSQ----KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL 525
+L + + + + ++Y ++D S+L + Y+CG R H L
Sbjct: 323 NLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICG-PIPFMRMQHDAL 381
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 38/146 (26%)
Query: 331 PHLQPRYYSISSSPRFAPDRV--HVTCALVYGPTPTGRIHKGVCSTWMKNA------IPL 382
R +S++S+P + H+ G + + + + I +
Sbjct: 41 DERDKRPFSMASTPD-EKGFIELHI-----------GASEINLYAKAVMDRILKDHQIVV 88
Query: 383 EG-NGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGP 441
+ +G+ L + P+I++ GTG + R L AL ++ +
Sbjct: 89 DIPHGE------------AWLRDDEERPMILIAGGTGFSYARSILLT--ALARNPNR--D 132
Query: 442 ALLFFGCRNRRMDFIYEDELNNFEEE 467
+++G R + EL +
Sbjct: 133 ITIYWGGREEQ-HLYDLCELEALSLK 157
|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} Length = 182 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-08
Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 28/123 (22%)
Query: 13 YGDGEPTDNAARFYKWFTE---GNDRGPWLQQLKFGVFGLGNRQ--YEHFNKIGIVLDEE 67
GDG+ +A E +FGLG++ F L E
Sbjct: 58 LGDGQLPGLSANAASESWEEFLPRIADQDFSGKTIALFGLGDQVTYPLEFVNALFFLHEF 117
Query: 68 LCKQGGARL---------------------VPLGLGDDDQ--CIEDDFTAWRELVWPELD 104
+G + + L L D+Q + W L+ +
Sbjct: 118 FSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQDNQAALTPERLKGWLSLIAADFG 177
Query: 105 QLL 107
+L
Sbjct: 178 LVL 180
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 39/278 (14%), Positives = 76/278 (27%), Gaps = 43/278 (15%)
Query: 267 AALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFF 326
A LA + S G + + + ++ ++ F G
Sbjct: 122 KAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAVA 181
Query: 327 AAVA-------------PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCS 373
PH + R YS++ P R+ V R G S
Sbjct: 182 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVK-----------REEGGQVS 230
Query: 374 TWMKNAIPLEGNGDCSWAPIFIRP--SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMA 431
W+ N + GD + + +F + P+ ++ G G P L
Sbjct: 231 NWLHNHANV---GD----VVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAK 283
Query: 432 LKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSR----EGSQKEYV 487
F N + DE+ + + + + ++ ++
Sbjct: 284 AGHT----AQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFD 338
Query: 488 QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL 525
+MD + + Y+CG G + + L
Sbjct: 339 SEGLMDLSKLEGAFSDPTMQFYLCG-PVGFMQFTAKQL 375
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 42/274 (15%), Positives = 84/274 (30%), Gaps = 53/274 (19%)
Query: 278 EPSEAERLKF-------LSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVF-FAAV 329
+ E E + F + P+ Y+ + + F + +
Sbjct: 30 KLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQ---------DRFRGDWDKMDAWSLTCK 80
Query: 330 APHLQPRYYSISSSPRFAPD-RVHVTCALVYG----PTPTGRIHKGVCSTWMKNAIP--- 381
R YS+++ P ++V A I G+ S+++ + P
Sbjct: 81 NEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDK 140
Query: 382 --LEG-NGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQ 438
+ G GD ++ +G G G+AP R + + G
Sbjct: 141 VMMSGPYGDFHIQD-------------TDAEMLYIGGGAGMAPLRAQILHLFRTLKTG-- 185
Query: 439 LGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ------KEYVQHKMM 492
++G R++ + YE++ E E + +A S + ++ +
Sbjct: 186 -RKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIY 243
Query: 493 DKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLH 526
D + + Y+CG MA V L
Sbjct: 244 DNYLKDHDAPE-DIEYYMCG-PGPMANAVKGMLE 275
|
| >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Length = 179 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-06
Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 34/122 (27%)
Query: 13 YGDGEPTDNAARFYKWFTE---GNDRGPWLQQLKFGVFGLGNRQ--YEHFNKIGIVLDEE 67
G+GE ++ E G +FGLG++ E++ L
Sbjct: 57 LGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSF 116
Query: 68 LCKQGGARL---------------------VPLGLGDDDQCIEDDFT-----AWRELVWP 101
+G + V L L D+Q T AW + P
Sbjct: 117 FKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQ---SGKTDERVAAWLAQIAP 173
Query: 102 EL 103
E
Sbjct: 174 EF 175
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 35/226 (15%), Positives = 75/226 (33%), Gaps = 53/226 (23%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395
R YSI+S + + + ++ G ++ +++ G+ I +
Sbjct: 64 RAYSIASPAW--DEELEFY---------SIKVPDGPLTSRLQHIKV----GE----QIIL 104
Query: 396 RP---SNFKLPANPSV-PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNR 451
RP + A + + GTG+APF ++E A ++ ++ CR
Sbjct: 105 RPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEKF----DEVIMMHACRTV 160
Query: 452 RMDFIYEDELNNFEEE-GVISELILA------------FSREGSQKEYVQHKMMDKAAQL 498
+ Y +L +E +I EL+ F G + + + + +
Sbjct: 161 A-ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGI 219
Query: 499 WSLLSKEGYLYVCG------------DAKGMARDVHRTLHTIVQEQ 532
+ + VCG ++ G+ + V E+
Sbjct: 220 APMNPETDRAMVCGSLAFNVDVMKVLESYGLREGANSEPREFVVEK 265
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 24/134 (17%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395
R YSI+S ++ G ++ +++ GD +
Sbjct: 50 RAYSIASPNYEEHLEFFSI-----------KVPDGPLTSRLQHLKE----GDELM--VSR 92
Query: 396 RPSNFKLPAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRM 453
+P+ + + P + ++ GTG+APF +Q+ ++ +L G R
Sbjct: 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS- 147
Query: 454 DFIYEDELNNFEEE 467
+ Y D + E
Sbjct: 148 ELAYADFITKVLPE 161
|
| >1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 56/225 (24%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395
R YS +SP ++ + G S + P GD + +
Sbjct: 50 RAYSYVNSPDNPDLEFYLV-----------TVPDGKLSPRLAALKP----GD----EVQV 90
Query: 396 RP--SNFKLPANPSVP--IIMVGPGTGLAPFRGFLQERMALKQDGAQLGPA---LLFFGC 448
+ F + + M+ GT + P+ +++ + G L +L
Sbjct: 91 VSEAAGFFVLDEVPHCETLWMLATGTAIGPY-------LSILRLGKDLDRFKNLVLVHAA 143
Query: 449 RNRRMDFIYEDELNNFEEEGVISELIL--AFSRE---GSQKEYVQHKMMDKAAQLW---S 500
R D Y + E+ +L + SRE GS + + +
Sbjct: 144 RYAA-DLSYLPLMQELEKR-YEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLP 201
Query: 501 LLSKEGYLYVCG-------------DAKGMARDVHRTLHTIVQEQ 532
+ + ++ +CG + + M + + R + E
Sbjct: 202 MNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAEH 246
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 78/562 (13%), Positives = 160/562 (28%), Gaps = 166/562 (29%)
Query: 47 FGLGNRQYEHFNKIGIVLDEELCKQGGARLVP------LGLGDDDQCIE--DDFTAWREL 98
F G QY + I V ++ + V L + D I D + L
Sbjct: 9 FETGEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 99 VW-----PE--LDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSS--VDNYSNMPNG 149
W E + + + + N Y + + P++ + ++ + N
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 150 NASFDIHHPCRVN--VAVRRELHKPDSDRS-CIHLEFDVSGTGITYETGDHV-------- 198
N F ++ R+ + +R+ L + ++ I V G+G T+ D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---GVLGSGKTWVALDVCLSYKVQCK 179
Query: 199 ---GVY---VENCDETVEEAGKLLGQSLELLFSLHTDNE-DGTPRGSSLTPPFPGPCTLR 251
++ ++NC+ LE+L L + + T R + +++
Sbjct: 180 MDFKIFWLNLKNCNSPETV--------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 252 TALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDD-YSQWVVAS---Q-R 306
L R + + P + L+ L + + + +
Sbjct: 232 AELRRL--LKSKPYENCLLVL----------------------LNVQNAKAWNAFNLSCK 267
Query: 307 SLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR 366
LL T V A S PD V
Sbjct: 268 ILL--------TTRFKQVTDFLSAATTT-HISLDHHSMTLTPDEV--------------- 303
Query: 367 IHKGVCSTWMKNAI---PLEGNGDCSWAPIFI------------RPSNFKLPANPSVPII 411
K + ++ P E + P + N+K + I
Sbjct: 304 --KSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 412 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 471
+ +L L PA R+M ++ L+ F I
Sbjct: 359 I----------------ESSLN----VLEPAEY------RKM---FDR-LSVFPPSAHIP 388
Query: 472 ELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 531
++L+ K V +++K + SL+ K K + +++ ++
Sbjct: 389 TILLSLIWFDVIKSDVM-VVVNKLHKY-SLVEK--------QPKESTISIP-SIYLELKV 437
Query: 532 QENVDSSKAESIVKKFQMEGRY 553
+ + + SIV + + +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTF 459
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 49/224 (21%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395
R YSI S ++ G ++ +++ GD I
Sbjct: 66 RAYSIVSPNYEEHLEFFSI-----------KVQNGPLTSRLQHLKV----GDPVL--IGK 108
Query: 396 RPSNFKLPAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRM 453
+P+ + N P + M+ GTGLAPF +++ ++ +L CR +
Sbjct: 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF----DKVVLTHTCRLKG- 163
Query: 454 DFIYEDELNNFEEEGVISELILAF--------SREGSQK-----EYVQHKMMDKAAQLWS 500
+ Y D + + ++ +RE + + + + +
Sbjct: 164 ELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLDMPP 223
Query: 501 LLSKEGYLYVCG------------DAKGMARDVHRTLHTIVQEQ 532
++ + +CG G+ + V E+
Sbjct: 224 FSPEQDRVMLCGSTAMLKDTTELLKKAGLVEGKNSAPGHYVIER 267
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 16/140 (11%)
Query: 336 RYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGD------CS 389
R Y+ +S + VY + G T +++P+ G
Sbjct: 62 RAYTPTSMV-DEIGHFDLLVK-VYFKNEHPKFPNGGLMTQYLDSLPV---GSYIDVKGPL 116
Query: 390 WAPIFIRPSNFKLPANPSVP--IIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFG 447
+ +F + + M+ G+G+ P + + L+ L +
Sbjct: 117 GHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQII--QAVLRDQPEDHTEMHLVYA 174
Query: 448 CRNRRMDFIYEDELNNFEEE 467
R D + DEL+ + E
Sbjct: 175 NRTED-DILLRDELDRWAAE 193
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 558 | |||
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 100.0 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 100.0 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 100.0 | |
| 3qfs_A | 458 | CPR, P450R, NADPH--cytochrome P450 reductase; flav | 100.0 | |
| 2qtl_A | 539 | MSR;, methionine synthase reductase; alpha-beta-al | 100.0 | |
| 4dql_A | 393 | Bifunctional P-450/NADPH-P450 reductase; rossmann | 100.0 | |
| 1f20_A | 435 | Nitric-oxide synthase; nitric-xoide synthase, redu | 100.0 | |
| 1ddg_A | 374 | Sulfite reductase (NADPH) flavoprotein alpha- comp | 100.0 | |
| 2bmw_A | 304 | Ferredoxin--NADP reductase; oxidoreductase, flavop | 100.0 | |
| 1fnb_A | 314 | Ferredoxin-NADP+ reductase; oxidoreductase (NADP+( | 100.0 | |
| 3vo2_A | 310 | Putative uncharacterized protein; rossmann fold, o | 100.0 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 100.0 | |
| 2rc5_A | 314 | Ferredoxin-NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 3lo8_A | 311 | Ferredoxin--NADP reductase; electron transport, ox | 100.0 | |
| 3jqq_A | 316 | Ferredoxin NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 1tvc_A | 250 | Methane monooxygenase component C, methane monooxy | 99.95 | |
| 1qfj_A | 232 | Protein (flavin reductase); riboflavin, ferredoxin | 99.94 | |
| 2r6h_A | 290 | NADH:ubiquinone oxidoreductase, Na translocating, | 99.94 | |
| 2eix_A | 243 | NADH-cytochrome B5 reductase; flavoprotein, FAD-bi | 99.94 | |
| 1fdr_A | 248 | Flavodoxin reductase; ferredoxin reductase, flavin | 99.94 | |
| 1krh_A | 338 | Benzoate 1,2-dioxygenase reductase; alpha-beta, FA | 99.94 | |
| 1umk_A | 275 | B5R, NADH-cytochrome B5 reductase; flavoprotein, b | 99.93 | |
| 4eh1_A | 243 | Flavohemoprotein; structural genomics, niaid, nati | 99.93 | |
| 1gvh_A | 396 | Flavohemoprotein; oxidoreductase, NADP, heme, flav | 99.93 | |
| 4fk8_A | 271 | Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st | 99.93 | |
| 4g1v_A | 399 | Flavohemoglobin; three domains: globin fold, antip | 99.93 | |
| 2bgi_A | 272 | Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi | 99.92 | |
| 1ep3_B | 262 | Dihydroorotate dehydrogenase B (PYRK subunit); het | 99.92 | |
| 1cqx_A | 403 | Flavohemoprotein; globin fold, six-stranded antipa | 99.92 | |
| 2cnd_A | 270 | NADH-dependent nitrate reductase; nitrate assimila | 99.92 | |
| 2qdx_A | 257 | Ferredoxin reductase; oxidoreductase; HET: FAD; 1. | 99.92 | |
| 2pia_A | 321 | Phthalate dioxygenase reductase; HET: FMN; 2.00A { | 99.91 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 99.91 | |
| 2gpj_A | 252 | Siderophore-interacting protein; structural genomi | 99.81 | |
| 3lrx_A | 158 | Putative hydrogenase; alpha-beta protein, structur | 99.75 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 99.74 | |
| 3lyu_A | 142 | Putative hydrogenase; the C-terminal has AN alpha- | 99.71 | |
| 3a1f_A | 186 | Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi | 99.71 | |
| 2hna_A | 147 | Protein MIOC, flavodoxin; alpha-beta sandwich, fla | 99.66 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 99.65 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 99.48 | |
| 1f4p_A | 147 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.36 | |
| 2wc1_A | 182 | Flavodoxin; electron transport, flavoprotein; HET: | 99.35 | |
| 1yob_A | 179 | Flavodoxin 2, flavodoxin II; alpha-beta fold, non- | 99.35 | |
| 2fcr_A | 173 | Flavodoxin; electron transport; HET: FMN; 1.80A {C | 99.31 | |
| 1ag9_A | 175 | Flavodoxin; electron transport, reductive activati | 99.28 | |
| 2bmv_A | 164 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.17 | |
| 1obo_A | 169 | Flavodoxin; electron transfer, flavoprotein, elect | 99.15 | |
| 1czn_A | 169 | Flavodoxin; FMN binding, redox potential, electron | 99.14 | |
| 2xod_A | 119 | NRDI protein, NRDI; flavoprotein, redox protein, r | 99.13 | |
| 1rlj_A | 139 | NRDI protein; flavoprotein, FMN, thioredoxin, alph | 98.98 | |
| 5nul_A | 138 | Flavodoxin; electron transport, flavoprotein, FMN; | 98.85 | |
| 3n3a_C | 153 | Protein NRDI; ribonucleotide reductase, four-helix | 98.5 | |
| 2fz5_A | 137 | Flavodoxin; alpha/beta doubly-wound topology, non- | 98.38 | |
| 3hly_A | 161 | Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein | 98.3 | |
| 3fni_A | 159 | Putative diflavin flavoprotein A 3; alpha-beta pro | 98.29 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 97.72 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 97.66 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 97.22 | |
| 2a5l_A | 200 | Trp repressor binding protein WRBA; APC5760, PA094 | 97.09 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 96.93 | |
| 3klb_A | 162 | Putative flavoprotein; structural genomi center fo | 96.69 | |
| 2ark_A | 188 | Flavodoxin; FMN, structural genomics, PSI, structu | 96.59 | |
| 3d7n_A | 193 | Flavodoxin, WRBA-like protein; structural genomics | 96.57 | |
| 4ici_A | 171 | Putative flavoprotein; PF12682 family protein, fla | 96.53 | |
| 3b6i_A | 198 | Flavoprotein WRBA; flavoproteins, NADH:quinone oxi | 96.23 | |
| 2vzf_A | 197 | NADH-dependent FMN reductase; oxidoreductase; 2.50 | 96.19 | |
| 2zki_A | 199 | 199AA long hypothetical Trp repressor binding prot | 96.01 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 95.63 | |
| 3gfs_A | 174 | FMN-dependent NADPH-azoreductase; flavoproteins, q | 95.55 | |
| 1t5b_A | 201 | Acyl carrier protein phosphodiesterase; structural | 95.54 | |
| 1ydg_A | 211 | Trp repressor binding protein WRBA; tetramer, stru | 95.51 | |
| 3edo_A | 151 | Flavoprotein, putative Trp repressor binding prote | 94.63 | |
| 1t0i_A | 191 | YLR011WP; FMN binding protein, flavodoxin, azoredu | 94.12 | |
| 1rtt_A | 193 | Conserved hypothetical protein; protein structure | 93.74 | |
| 3k1y_A | 191 | Oxidoreductase; structural genomics, PSI-2, protei | 93.59 | |
| 1sqs_A | 242 | Conserved hypothetical protein; structural genomic | 93.01 | |
| 4hs4_A | 199 | Chromate reductase; triple-layered, A/B/A structur | 91.64 | |
| 2hpv_A | 208 | FMN-dependent NADH-azoreductase; structural genomi | 91.02 | |
| 3lcm_A | 196 | SMU.1420, putative oxidoreductase; NADPH:quinone o | 90.74 | |
| 3fvw_A | 192 | Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s | 90.66 | |
| 1rli_A | 184 | Trp repressor binding protein; structural genomics | 90.17 | |
| 2q62_A | 247 | ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi | 89.89 | |
| 3svl_A | 193 | Protein YIEF; E. coli CHRR enzyme, chromate biorem | 89.5 | |
| 3u7r_A | 190 | NADPH-dependent FMN reductase; alpha/beta twisted | 89.19 | |
| 3ha2_A | 177 | NADPH-quinone reductase; structural genomics, PSI- | 88.08 | |
| 2fzv_A | 279 | Putative arsenical resistance protein; flavin bind | 87.53 | |
| 3r6w_A | 212 | FMN-dependent NADH-azoreductase 1; nitrofurazone, | 87.48 | |
| 3s2y_A | 199 | Chromate reductase; uranium reductase, oxidoreduct | 86.48 | |
| 3rpe_A | 218 | MDAB, modulator of drug activity B; structural gen | 86.15 | |
| 2amj_A | 204 | Modulator of drug activity B; oxidoreductase, mena | 84.3 | |
| 3f2v_A | 192 | General stress protein 14; alpha-beta protein., st | 84.26 | |
| 3p0r_A | 211 | Azoreductase; structural genomics, center for stru | 83.42 | |
| 3tem_A | 228 | Ribosyldihydronicotinamide dehydrogenase [quinone; | 83.1 | |
| 3u7i_A | 223 | FMN-dependent NADH-azoreductase 1; structural geno | 80.47 |
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-104 Score=878.48 Aligned_cols=535 Identities=41% Similarity=0.776 Sum_probs=474.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||+|++|+||+.||++|.....+ |++++||||||||++|++||+++++++++|+++||++++++++
T Consensus 70 ~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~~~~---l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~ 146 (618)
T 3qe2_A 70 DNALVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGL 146 (618)
T ss_dssp TTCEEEEEEECBGGGBCCGGGHHHHHHHHHCCCC---CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEE
T ss_pred cCcEEEEEcCccCCCCCCHHHHHHHHHHhhcccc---ccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccc
Confidence 3678999999999999999999999999875433 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCccc----ccCCC-CCCCCCCCCCCCCC
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVT----SSVDN-YSNMPNGNASFDIH 156 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~ 156 (558)
+|++.+++++|+.|.+.+|++|++.++.+..... ...+.|++....+... .+... .........+++.+
T Consensus 147 ~D~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 3qe2_A 147 GDDDGNLEEDFITWREQFWLAVCEHFGVEATGEE------SSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAK 220 (618)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSS
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHhCCCccccc------ccccceeEEecccccccccccccccccccccccCCCcccC
Confidence 9999899999999999999999998874321110 1224566655422110 11110 00111234567888
Q ss_pred CceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCC
Q 008647 157 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPR 236 (558)
Q Consensus 157 ~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~ 236 (558)
+|+.|+|++|++|+. +++++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++.......
T Consensus 221 ~~~~a~v~~n~~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~--- 296 (618)
T 3qe2_A 221 NPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES--- 296 (618)
T ss_dssp SCEEEEEEEEEECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTC---
T ss_pred CcEEEEEEeEEEcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccc---
Confidence 999999999999996 5679999999999988899999999999999999999999999999999999998764421
Q ss_pred CCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHcc--CCCchhHHHHHHhhcCCCHHHHHHh
Q 008647 237 GSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLS--SPQGKDDYSQWVVASQRSLLEVMAE 314 (558)
Q Consensus 237 ~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~--s~~~~~~~~~~~~~~~~~~~d~l~~ 314 (558)
..+.|+|.|+|++++|++|+||+++|+++||+.||.||+|+.+|++|.+|+ +++|++.|++|+.+++++++|||.+
T Consensus 297 --~~~~~~p~~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~ 374 (618)
T 3qe2_A 297 --NKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQD 374 (618)
T ss_dssp --SCCSSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHH
T ss_pred --cCCCCCCCceEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHh
Confidence 245689999999999999999999999999999999999999999999998 7889999999999999999999999
Q ss_pred CCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCC-CCCCCCcc----
Q 008647 315 FPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCS---- 389 (558)
Q Consensus 315 f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~-G~~~~~~~---- 389 (558)
||++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.|+++.++.+.|.||+||+++.+ | +
T Consensus 375 fps~~~p~~~l~~~l-p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~G------d~~~~ 447 (618)
T 3qe2_A 375 CPSLRPPIDHLCELL-PRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVG------ENGGR 447 (618)
T ss_dssp STTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----------C
T ss_pred CCccCCCHHHHHHhc-cccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccC------CCCcc
Confidence 999999999999999 999999999999998778999999999999998888999999999999888 7 6
Q ss_pred -EEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 -WAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 -~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.|.+|.|.|.+|.++.+|+||||+|||||||+||++++.....++...++++||||||+++.|++|++||++|.+.+
T Consensus 448 ~~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g 527 (618)
T 3qe2_A 448 ALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDG 527 (618)
T ss_dssp CEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHT
T ss_pred eEEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcC
Confidence 8999999999999988789999999999999999999998865444434689999999999955999999999999999
Q ss_pred CccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 008647 469 VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 548 (558)
.+++++++|||++..++|||+++.++.+.+++++.+++.||||||+..|+++|.++|.+++++++++++++|++|+++|+
T Consensus 528 ~l~~l~~a~Srd~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~ 607 (618)
T 3qe2_A 528 ALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLM 607 (618)
T ss_dssp SSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88899999999988899999999999999999888899999999944899999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 008647 549 MEGRYLRDVW 558 (558)
Q Consensus 549 ~~~Ry~~dvw 558 (558)
++|||++|||
T Consensus 608 ~~~RY~~Dv~ 617 (618)
T 3qe2_A 608 TKGRYSLDVW 617 (618)
T ss_dssp HTTSEEEEEE
T ss_pred HcCCeEEeec
Confidence 9999999999
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-98 Score=840.01 Aligned_cols=536 Identities=32% Similarity=0.570 Sum_probs=457.3
Q ss_pred CC-cEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LH-SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~-~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.+ +.+||++||||+|++|+||..||+||.... ...|++++|||||+||++|++||.+++.++++|+++||+++.+++
T Consensus 97 ~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~ 174 (682)
T 2bpo_A 97 DVPVIVSIFISTYGEGDFPDGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLG 174 (682)
T ss_dssp GCCSEEEEEEECBTTTBCCSSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCE
T ss_pred hcCCeEEEEeCccCCCCCCHHHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcE
Confidence 35 899999999999999999999999998754 123899999999999999999999999999999999999999999
Q ss_pred ccCCCC-CchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCC---cccccCCCCCCC----------
Q 008647 81 LGDDDQ-CIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGP---TVTSSVDNYSNM---------- 146 (558)
Q Consensus 81 ~~d~~~-~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------- 146 (558)
++|+++ +.+++|+.|.+++|++|++.++.+..... ..+.+.++.... ....+.+.....
T Consensus 175 ~~D~~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (682)
T 2bpo_A 175 EADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAK-------FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNAD 247 (682)
T ss_dssp EEETTTTCHHHHHHHHHHHHHHHHHHHTTCCCCCCC-------CCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTT
T ss_pred EEecCCcccHHHHHHHHHHHHHHHHhhcCCcccccc-------cCCcceeEecccCCccccccCcccccccccccccccc
Confidence 999986 78999999999999999998764322110 123333332211 111111110000
Q ss_pred CCCCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEE
Q 008647 147 PNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSL 226 (558)
Q Consensus 147 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~ 226 (558)
.+...+++.++||.|+|++|++|++ +++++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||++++++|++
T Consensus 248 ~~~~~~~~~~~p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~ 326 (682)
T 2bpo_A 248 GIQLGPFDLSQPYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDL 326 (682)
T ss_dssp CCBCSCCBTTBCCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEEC
T ss_pred ccccCcccCCCceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEE
Confidence 0123467788999999999999998 788999999999998899999999999999999999999999999999999998
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCC
Q 008647 227 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 306 (558)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~ 306 (558)
....+. .+.|+|.|+|++++|++|+||+++|+|+||+.||.||+|+.+|++|++|+ +|++.|++|+.++++
T Consensus 327 ~~~~~~-------~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~ 397 (682)
T 2bpo_A 327 KPLDPT-------VKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYF 397 (682)
T ss_dssp CBSSTT-------CCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTC
T ss_pred ecCCcc-------cCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCC
Confidence 755431 34589999999999999999999999999999999999999999999997 799999999999999
Q ss_pred CHHHHHHhCC----CCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCC---CCcccCcccHHhhhc
Q 008647 307 SLLEVMAEFP----SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT---GRIHKGVCSTWMKNA 379 (558)
Q Consensus 307 ~~~d~l~~f~----~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~---~~~~~G~~S~~L~~l 379 (558)
|++|+|.+|| ++++|+++++.++ |+++||+|||||+|..+++.++|+|+++.|+++. ++.+.|+||+||+++
T Consensus 398 ~i~dvL~~fp~~~~s~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l 476 (682)
T 2bpo_A 398 NIADALKYLSDGAKWDTVPMQFLVESV-PQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNI 476 (682)
T ss_dssp CHHHHHHHHHTTCCCTTSCHHHHHHHS-CBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHH
T ss_pred CHHHHHHhccCcccccCCCHHHHHHhC-cccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhc
Confidence 9999999999 8899999999998 9999999999999987679999999999998875 577899999999998
Q ss_pred CCCC---C---CCCccEEEEEee--------------CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhh-----
Q 008647 380 IPLE---G---NGDCSWAPIFIR--------------PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----- 434 (558)
Q Consensus 380 ~~G~---~---~~~~~~v~v~~p--------------~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~----- 434 (558)
++|. + ...++.+.|.+| .+.|.+|.++.+|+||||+||||||||||++++.....
T Consensus 477 ~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~ 556 (682)
T 2bpo_A 477 QLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKG 556 (682)
T ss_dssp HHHHTTCCTTTSCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC--
T ss_pred ccccccccccccccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccc
Confidence 7720 0 000044444444 44568887778899999999999999999999987543
Q ss_pred -cCCCCCCeEEEEeccCCCCccccHHHHHHHH-HcCCccEEEEEEec-CCCCccchhhhhHhcHHHHHHhhhCCCEEEEe
Q 008647 435 -DGAQLGPALLFFGCRNRRMDFIYEDELNNFE-EEGVISELILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVC 511 (558)
Q Consensus 435 -~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~-~~~~~~~~~~a~Sr-~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvC 511 (558)
.+...++++||||||++. |++|++||++|+ +.+.+++++++||| ++..++|||++|.++.+.+++++.+++.||||
T Consensus 557 ~~g~~~~~~~L~fG~R~~~-D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvC 635 (682)
T 2bpo_A 557 GNNVSLGKHILFYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVC 635 (682)
T ss_dssp --CCCCCCEEEEEEESSSS-SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEE
T ss_pred cccCCcCCEEEEEecCChh-hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEe
Confidence 232368999999999996 999999999995 55778899999999 55579999999999999999988778999999
Q ss_pred CCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 512 GDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 512 Gp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
||+++|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 636 Gpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 636 GDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp ECSTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCchHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 99668999999999999999999999999999999999999999999
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-95 Score=815.76 Aligned_cols=537 Identities=33% Similarity=0.596 Sum_probs=454.4
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----------------------------C-----------CCCCCCce
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----------------------------R-----------GPWLQQLK 43 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----------------------------~-----------~~~l~~~~ 43 (558)
++++||++||||+|+||+|++.|+++|..+.. + ...|++++
T Consensus 58 ~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~ 137 (688)
T 1tll_A 58 EALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVR 137 (688)
T ss_dssp CSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCE
T ss_pred CceEEEEEcccCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCe
Confidence 57899999999999999999999999986510 0 13589999
Q ss_pred EEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCC------
Q 008647 44 FGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVS------ 117 (558)
Q Consensus 44 ~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~------ 117 (558)
||||||||++|++||++++.+|++|+++||++|++++++|+..+.+.+|+.|.+.+|+++++.+....+.....
T Consensus 138 ~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (688)
T 1tll_A 138 FSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLI 217 (688)
T ss_dssp EEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------
T ss_pred EEEEeeccCchHHHHHHHHHHHHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 99999999999999999999999999999999999999999888999999999999999999875432211000
Q ss_pred CC-CccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCC-CccccCC
Q 008647 118 TP-YTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETG 195 (558)
Q Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~-~~~y~~G 195 (558)
.+ .....+.+++......... .....+++.++|+.++|++|++|++++++++|+||+|+++++ +++|+||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~G 289 (688)
T 1tll_A 218 SNDRSWKRNKFRLTYVAEAPDL--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPG 289 (688)
T ss_dssp CCSSSCCTTTEEEEECSCCCCH--------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTT
T ss_pred ccccccCCcceEEecccccccc--------cccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCC
Confidence 00 0011233444332111000 000012456788999999999999999999999999999764 6999999
Q ss_pred CeEEEeecCCHHHHHHHHHHhCC--CCccEEEEecCCCCCCCCC----CCCCCCCCCcccHHHHHhhhccccCCccHHHH
Q 008647 196 DHVGVYVENCDETVEEAGKLLGQ--SLELLFSLHTDNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAAL 269 (558)
Q Consensus 196 D~l~i~p~N~~~~V~~~l~~l~l--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l 269 (558)
|+|+|+|+|+++.|+++|++||+ ++++.|++....+...+.+ ...+.++| |+|++++|++|+||+++|++.||
T Consensus 290 D~l~V~P~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~~p~~~~l 368 (688)
T 1tll_A 290 DHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQL 368 (688)
T ss_dssp CEEEECCCCCHHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCCC-CccHHHHHHhheeCCCCCCHHHH
Confidence 99999999999999999999986 5688888865322111100 01235788 99999999999999999999999
Q ss_pred HHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCC
Q 008647 270 IALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPD 349 (558)
Q Consensus 270 ~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~ 349 (558)
+.||.||+|+.+|++|++|++ +++.|.+|+..++++++|+|.+||++++|++.++..+ |++.+|+|||||+|..+++
T Consensus 369 ~~la~~a~~~~ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~ 445 (688)
T 1tll_A 369 QQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPD 445 (688)
T ss_dssp HHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEEBCSCTTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHhC-cccceeEEeecCCcccCCC
Confidence 999999999999999999975 7889999999999999999999999999999999888 9999999999999976678
Q ss_pred eEEEEEEEEEccCCCC--CcccCcccHHhhhcCCCCCCCCccEEEEEeeC-CCCcCCCCCCCCEEEEccCccccchHHHH
Q 008647 350 RVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFL 426 (558)
Q Consensus 350 ~i~l~v~vv~~~~~~~--~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~-g~F~lp~~~~~plilIa~GtGIAP~~s~l 426 (558)
.++|+|+++.|+++.| +.+.|.||+||+++++| +.|.|.+|. |.|.+|.+..+|+||||+|||||||+||+
T Consensus 446 ~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~G------d~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l 519 (688)
T 1tll_A 446 EVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQAD------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFW 519 (688)
T ss_dssp EEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTT------SEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHH
T ss_pred eEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCC------CEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHH
Confidence 9999999998876643 56789999999999999 899999965 49999987788999999999999999999
Q ss_pred HHHHHHhh-cCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCC-ccchhhhhHhc-HHHHHHhh-
Q 008647 427 QERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL- 502 (558)
Q Consensus 427 ~~~~~~~~-~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~-k~yvq~~l~~~-~~~l~~~~- 502 (558)
+++..... .+...++++||||||+.+.|++|++||++|++.+.++++++++||++.. ++|||++|.++ .+.+++++
T Consensus 520 ~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~ 599 (688)
T 1tll_A 520 QQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALK 599 (688)
T ss_dssp HHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhc
Confidence 99876421 1224689999999999876899999999999999888999999999764 89999999988 77788766
Q ss_pred hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 503 SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 503 ~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
..+++|||||| ++|+++|.++|.+++.+++++++++|++|+++|++++||++|+|
T Consensus 600 ~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 600 EQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp TSCCEEEEEEE-HHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCcEEEEeCC-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 56899999999 78999999999999999999999999999999999999999998
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-83 Score=687.30 Aligned_cols=429 Identities=41% Similarity=0.765 Sum_probs=380.9
Q ss_pred CCCceEEEEcCCcc----cccCCCC-CCCCCCCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCe
Q 008647 123 AIPEYRVMIHGPTV----TSSVDNY-SNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDH 197 (558)
Q Consensus 123 ~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~ 197 (558)
..+.|++..+++.. ..+++.. ....++..+|+.++||.|+|++|++||+ +++|+|+||+|++++++++|+|||+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD~ 100 (458)
T 3qfs_A 22 SIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDH 100 (458)
T ss_dssp --CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCE
T ss_pred ceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCCE
Confidence 45778888875443 2344322 1233466789999999999999999997 5679999999999988999999999
Q ss_pred EEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCC
Q 008647 198 VGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHAT 277 (558)
Q Consensus 198 l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~ 277 (558)
|+|+|.|+++.|+++|++||++++..|++....... ..+.|+|.|+|++++|++|+||+++|+++||+.||.||+
T Consensus 101 l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~-----~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a~ 175 (458)
T 3qfs_A 101 VAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYAS 175 (458)
T ss_dssp EEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTC-----SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBC
T ss_pred EEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCccc-----ccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999998654321 235689999999999999999999999999999999999
Q ss_pred CHhHHHHHHHccCC--CchhHHHHHHhhcCCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEE
Q 008647 278 EPSEAERLKFLSSP--QGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTC 355 (558)
Q Consensus 278 ~~~~k~~L~~l~s~--~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v 355 (558)
|+.+|++|++|++. +|++.|++|+.++++|++|||.+||++++|+++|++++ |+++||+|||||+|..+++.++|+|
T Consensus 176 ~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~l-p~l~pR~YSIsSsp~~~~~~i~ltV 254 (458)
T 3qfs_A 176 EPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELL-PRLQARYYSIASSSKVHPNSVHICA 254 (458)
T ss_dssp SHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEEE
T ss_pred CHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhhC-CCCcceeEeeccCcccCCCEEEEEE
Confidence 99999999999874 68899999999999999999999999999999999999 9999999999999987789999999
Q ss_pred EEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc
Q 008647 356 ALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD 435 (558)
Q Consensus 356 ~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~ 435 (558)
+++.|+++.++.+.|.||+||+++.+||+......|.+.+|.|.|.+|.++.+|+||||+|||||||+||++++..+.++
T Consensus 255 ~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~ 334 (458)
T 3qfs_A 255 VVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQ 334 (458)
T ss_dssp ECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhc
Confidence 99999988888999999999999888741111116999999999999987788999999999999999999998654333
Q ss_pred CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCc
Q 008647 436 GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK 515 (558)
Q Consensus 436 ~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~ 515 (558)
+...++++||||||+.+.|++|++||++|++.+.+++++++|||++..++|||+++.++.+.+++++.+++.||||||+.
T Consensus 335 g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~ 414 (458)
T 3qfs_A 335 GKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDAR 414 (458)
T ss_dssp TCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCH
Confidence 33458899999999974499999999999999988889999999988899999999999999999888899999999955
Q ss_pred chHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 516 GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 516 ~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 415 ~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 415 NMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp THHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 8999999999999999999999999999999999999999999
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-79 Score=665.60 Aligned_cols=402 Identities=34% Similarity=0.616 Sum_probs=355.4
Q ss_pred CCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCC--ccEEEE
Q 008647 149 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSL--ELLFSL 226 (558)
Q Consensus 149 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~~~~ 226 (558)
...+|+..+||.|+|++|++||+++++|+|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++ +.+|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 456788999999999999999999999999999999998889999999999999999999999999999986 467887
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCC
Q 008647 227 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 306 (558)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~ 306 (558)
........ .+...+.++|.++|++++|++|+||+++|+|.||+.||.||+|+.+|++|.+|++++|++.|++|+.++++
T Consensus 185 ~~~~~~~~-~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~ 263 (539)
T 2qtl_A 185 KIKADTKK-KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACA 263 (539)
T ss_dssp EECTTCCC-TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTC
T ss_pred eccccccC-CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCC
Confidence 76543221 12345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCC--CCCcccCcccHHhhhc-----
Q 008647 307 SLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP--TGRIHKGVCSTWMKNA----- 379 (558)
Q Consensus 307 ~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~--~~~~~~G~~S~~L~~l----- 379 (558)
|++|+|.+||++++|+++|++++ |++++|+|||||+|..+++.++|+|+++.|+++ .++.+.|+||+||+++
T Consensus 264 ~lldvL~~fps~~~p~~~ll~~l-p~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~ 342 (539)
T 2qtl_A 264 CLLDLLLAFPSCQPPLSLLLEHL-PKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVL 342 (539)
T ss_dssp CHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC
T ss_pred CHHHHHHhCCCcCCCHHHHHHhC-cCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhc
Confidence 99999999999999999999999 999999999999997567999999999988543 3456789999999997
Q ss_pred ------CCCCCCCCcc-------EEEEEeeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC--CCCCCeE
Q 008647 380 ------IPLEGNGDCS-------WAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG--AQLGPAL 443 (558)
Q Consensus 380 ------~~G~~~~~~~-------~v~v~~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~i~ 443 (558)
++| + .|.|.+|.| .|.+|.+..+|+||||+||||||||||++++....+.+ ...++++
T Consensus 343 ~~~~~~~~G------d~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~ 416 (539)
T 2qtl_A 343 QPNIHASHE------DSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMW 416 (539)
T ss_dssp --------------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEE
T ss_pred cccccCCCC------CccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEE
Confidence 788 7 999999986 99999877899999999999999999999987644322 1368999
Q ss_pred EEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcc
Q 008647 444 LFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKG 516 (558)
Q Consensus 444 L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~ 516 (558)
||||||+.+.|++|++||++|++.+.+++++++|||++. .++|||++|.++.+.+++++ ..+++||||||+.+
T Consensus 417 LffG~R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~ 496 (539)
T 2qtl_A 417 LFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKN 496 (539)
T ss_dssp EEEEESCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHH
T ss_pred EEEEECCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHH
Confidence 999999994499999999999999998899999999976 68999999999999999988 56899999999438
Q ss_pred hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 517 MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 517 M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 497 M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 497 MAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 999999999999999999999999999999999999999999
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-78 Score=635.94 Aligned_cols=383 Identities=34% Similarity=0.609 Sum_probs=341.5
Q ss_pred CceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCC
Q 008647 157 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPR 236 (558)
Q Consensus 157 ~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~ 236 (558)
.++.|+|++|++||+++++++|+||+|++++ +++|+|||+|+|+|.|+++.|+++|++||++++..|++......
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~---- 79 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELPK-EASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEK---- 79 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECCT-TCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECCC-CCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCc----
Confidence 4678999999999999999999999999985 89999999999999999999999999999999988876542211
Q ss_pred CCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCC
Q 008647 237 GSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP 316 (558)
Q Consensus 237 ~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~ 316 (558)
....|++.|+|++++|++ +||+++|+++||+.||.||+|+.+|++|++|++. +.|.+|+.++++|++|+|.+||
T Consensus 80 --~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~fp 153 (393)
T 4dql_A 80 --LAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKYP 153 (393)
T ss_dssp ---------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHCT
T ss_pred --cccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhCC
Confidence 124477889999999999 9999999999999999999999999999999763 3799999999999999999999
Q ss_pred CCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCC-cccCcccHHhhhcCCCCCCCCccEEE--E
Q 008647 317 SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAP--I 393 (558)
Q Consensus 317 ~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~-~~~G~~S~~L~~l~~G~~~~~~~~v~--v 393 (558)
++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.++++.|+ .+.|.||+||+++++| +.|. |
T Consensus 154 s~~~p~~~~l~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~G------d~v~v~v 226 (393)
T 4dql_A 154 ACEMKFSEFIALL-PSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEG------DTITCFI 226 (393)
T ss_dssp TCCCCHHHHHHTS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCHHHHHHhC-CCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCc------CEEEEEE
Confidence 9999999999998 999999999999998767899999999988776554 4569999999999999 8888 5
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
.+|.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||++..|++|++||+++++.+.+ ++
T Consensus 227 ~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~l 305 (393)
T 4dql_A 227 STPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-TL 305 (393)
T ss_dssp ECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-EE
T ss_pred EcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-EE
Confidence 67889999998778899999999999999999999865544443457899999999954499999999999987654 79
Q ss_pred EEEEec-CCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCC
Q 008647 474 ILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGR 552 (558)
Q Consensus 474 ~~a~Sr-~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 552 (558)
++++|| ++..++|||+++.++.+.+++++.++++||||||++.|.++|+++|.+++++++++++++|++|+++|+++||
T Consensus 306 ~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 385 (393)
T 4dql_A 306 HTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGR 385 (393)
T ss_dssp EEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Confidence 999999 4557899999999999999998888999999999778999999999999999999999999999999999999
Q ss_pred eEEeeC
Q 008647 553 YLRDVW 558 (558)
Q Consensus 553 y~~dvw 558 (558)
|++|||
T Consensus 386 y~~dv~ 391 (393)
T 4dql_A 386 YAKDVW 391 (393)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999999
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-76 Score=628.61 Aligned_cols=396 Identities=36% Similarity=0.653 Sum_probs=352.2
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCC-CccccCCCeEEEeecCCHHHHHHHHHHhCC--CCccEEEEec
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLLGQ--SLELLFSLHT 228 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~~~~~~ 228 (558)
.++.++|+.++|++|++|++++++++|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++||+ ++++.|++..
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4677899999999999999999999999999999865 699999999999999999999999999986 6688888865
Q ss_pred CCCCCCCCC----CCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhc
Q 008647 229 DNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVAS 304 (558)
Q Consensus 229 ~~~~~~~~~----~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~ 304 (558)
..+...+.+ ...+.++| ++|++++|++|+||+++|+++||+.||.||+|+.+|++|++|++ +++.|.+|+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~ 180 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGK 180 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred cccccCCCCccccccccCCCC-CccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhcc
Confidence 321111100 01245788 99999999999999999999999999999999999999999975 788999999999
Q ss_pred CCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCC--CcccCcccHHhhhcCCC
Q 008647 305 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIPL 382 (558)
Q Consensus 305 ~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~--~~~~G~~S~~L~~l~~G 382 (558)
+++++|+|.+||++++|++.++..+ |++.+|+|||||+|..+++.++|+|+++.|.++.| +.+.|.||+||+++++|
T Consensus 181 ~~~i~~vl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~G 259 (435)
T 1f20_A 181 NPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQAD 259 (435)
T ss_dssp CCCHHHHHHHSTTBCBCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTT
T ss_pred CCCHHHHHHhCCcCCCCHHHHHHhC-CCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCC
Confidence 9999999999999999999999998 99999999999999766789999999998877653 56789999999999999
Q ss_pred CCCCCccEEEEEeeC-CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhh-cCCCCCCeEEEEeccCCCCccccHHH
Q 008647 383 EGNGDCSWAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDE 460 (558)
Q Consensus 383 ~~~~~~~~v~v~~p~-g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~-~~~~~~~i~L~~G~R~~~~d~~y~~e 460 (558)
+.|.+.+|. |.|.+|.+..+|+||||+|||||||+||++++..... .+...++++||||||+.+.|++|++|
T Consensus 260 ------d~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~E 333 (435)
T 1f20_A 260 ------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 333 (435)
T ss_dssp ------CEEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHH
T ss_pred ------CEEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHH
Confidence 899999954 5999998778899999999999999999999876321 12246899999999998768999999
Q ss_pred HHHHHHcCCccEEEEEEecCCCC-ccchhhhhHhc-HHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCH
Q 008647 461 LNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDS 537 (558)
Q Consensus 461 l~~~~~~~~~~~~~~a~Sr~~~~-k~yvq~~l~~~-~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 537 (558)
|+++++.+.++++++++||++.. ++|||+++.++ .+.+++++ ..++.|||||| ++|+++|.++|.+++.+++++++
T Consensus 334 l~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~ 412 (435)
T 1f20_A 334 TLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSE 412 (435)
T ss_dssp HHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCH
Confidence 99999999888899999999764 89999999887 77788766 56899999999 78999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 008647 538 SKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 538 ~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++|++|+++|+++|||++|||
T Consensus 413 ~~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 413 EDAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 999999999999999999999
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-75 Score=607.15 Aligned_cols=368 Identities=30% Similarity=0.521 Sum_probs=339.4
Q ss_pred CCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCC
Q 008647 151 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 230 (558)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 230 (558)
++|+.++||.|+|++|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..|++.
T Consensus 4 ~~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~--- 80 (374)
T 1ddg_A 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE--- 80 (374)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET---
T ss_pred CCCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC---
Confidence 45788999999999999999999999999999999888899999999999999999999999999999999988873
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHH
Q 008647 231 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 310 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d 310 (558)
+.++|++++|++|+||+ +|+|+||+.||.||+|++ |.+|+ ++++.|.+|+. +++++|
T Consensus 81 --------------~~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~--~~~~~~~~~~~--~~~~~~ 137 (374)
T 1ddg_A 81 --------------GKTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLV--GDKAKLQHYAA--TTPIVD 137 (374)
T ss_dssp --------------TEEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGT--TCTHHHHHHHH--HSCHHH
T ss_pred --------------CCCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHh--cChHHHHHHHc--CCCHHH
Confidence 13899999999999999 899999999999999974 88886 47888999987 479999
Q ss_pred HHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCcc
Q 008647 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCS 389 (558)
Q Consensus 311 ~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~ 389 (558)
+|.+||+ .+++|||+++. +++.+|+|||||+|..+++.++|+|+++.|+++ ++.+.|.||+||++ +++| +
T Consensus 138 vl~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~G------d 208 (374)
T 1ddg_A 138 MVRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE------G 208 (374)
T ss_dssp HHHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSS------C
T ss_pred HHHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCC------C
Confidence 9999999 99999999999 889999999999997667899999999988775 56678999999999 9999 8
Q ss_pred EEEEEeeC-CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 WAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 ~v~v~~p~-g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.+.+|. |.|.+|.+..+|+||||+|||||||+||++++... + ..++++||||||+.+.|++|++||+++++.+
T Consensus 209 ~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~ 284 (374)
T 1ddg_A 209 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---E-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEG 284 (374)
T ss_dssp EEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTT
T ss_pred EEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhC
Confidence 99999965 49999977789999999999999999999998863 2 4578999999999833999999999999999
Q ss_pred CccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeC-CCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 008647 469 VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCG-DAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 547 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCG-p~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 547 (558)
.++++++++||++..++|||+++.++.+.+++++.+++.||||| | ++|+++|.++|.+++++++++++++|++|+++|
T Consensus 285 ~~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 363 (374)
T 1ddg_A 285 VLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSEL 363 (374)
T ss_dssp SCCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88899999999988899999999998888999887899999999 7 899999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 008647 548 QMEGRYLRDVW 558 (558)
Q Consensus 548 ~~~~Ry~~dvw 558 (558)
+++|||++|||
T Consensus 364 ~~~~Ry~~dv~ 374 (374)
T 1ddg_A 364 RVERRYQRDVY 374 (374)
T ss_dssp HHTTCEEEEEC
T ss_pred HHCCCeEEecC
Confidence 99999999999
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=326.16 Aligned_cols=274 Identities=24% Similarity=0.417 Sum_probs=224.6
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.++...|+.++|+++++|++.++++++++++|++++..+.|+||+++.|.++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556778999999999999988889999999998865689999999999887631 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
.|
T Consensus 71 ------------------------------------------------------------~g------------------ 72 (304)
T 2bmw_A 71 ------------------------------------------------------------NG------------------ 72 (304)
T ss_dssp ------------------------------------------------------------TS------------------
T ss_pred ------------------------------------------------------------cC------------------
Confidence 00
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCC-CCcccCcccHHhhhcCCCCCCCC
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNGD 387 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~-~~~~~G~~S~~L~~l~~G~~~~~ 387 (558)
.+..+|+|||+|+|.. +++.++|+|+++.|.++. ++.+.|.+|+||+++++|
T Consensus 73 -------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G----- 128 (304)
T 2bmw_A 73 -------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPG----- 128 (304)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTT-----
T ss_pred -------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCC-----
Confidence 0136799999999852 357899999987666543 334579999999999999
Q ss_pred ccEEEEEeeCCCC-cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc--C---CCCCCeEEEEeccCCCCccccHHHH
Q 008647 388 CSWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--G---AQLGPALLFFGCRNRRMDFIYEDEL 461 (558)
Q Consensus 388 ~~~v~v~~p~g~F-~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~--~---~~~~~i~L~~G~R~~~~d~~y~~el 461 (558)
+.|.|.+|.|.| .++.+..+|+||||+|||||||+||++++...... + ...++++||||+|+.+ |++|.+||
T Consensus 129 -d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el 206 (304)
T 2bmw_A 129 -SEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEEL 206 (304)
T ss_dssp -CEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHH
T ss_pred -CEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHH
Confidence 899999999965 56655568999999999999999999987653211 0 0136899999999988 99999999
Q ss_pred HHHHHcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCC
Q 008647 462 NNFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENV 535 (558)
Q Consensus 462 ~~~~~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~ 535 (558)
+++++.+. ++++++++||++. .++|+++.+.+..+.+++++. .++.||+||| ++|+++|+++|.+++.+.+ +
T Consensus 207 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~ 284 (304)
T 2bmw_A 207 EEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-V 284 (304)
T ss_dssp HHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C
T ss_pred HHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c
Confidence 99988764 6789999999753 478999999888777777654 4679999999 8999999999999987654 4
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 008647 536 DSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 536 ~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+ +++++++|+++|||++|||
T Consensus 285 ~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 285 T---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp C---HHHHHHHHHHTTCEEEEEC
T ss_pred c---HHHHHHHHHHcCCeEEecC
Confidence 4 6889999999999999999
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=329.20 Aligned_cols=273 Identities=27% Similarity=0.469 Sum_probs=224.4
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.++...++.++|++++++++.++++++++|+|+.++ .+.|+||+++.|.++|..
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------- 84 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED------------------------- 84 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC-------------------------
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC-------------------------
Confidence 355677889999999999988888899999999876 489999999999876531
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
.+|
T Consensus 85 -----------------------------------------------------------~~g------------------ 87 (314)
T 1fnb_A 85 -----------------------------------------------------------KNG------------------ 87 (314)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------cCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
.+..+|+|||+|+|.. ..+.++|+|+++.|.++.++.+.|.+|+||+++++|
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~G------ 142 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPG------ 142 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTT------
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCC------
Confidence 1236799999999863 257899999987776655555679999999999999
Q ss_pred cEEEEEeeCCCC-cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F-~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.|.+|.|.| .++.+..+|+||||+|||||||++|++++......+ ...++++||||+|+.+ |++|.+||+++++
T Consensus 143 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~ 221 (314)
T 1fnb_A 143 AEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 221 (314)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred CEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 899999999976 455545689999999999999999999987521000 0146799999999998 9999999999988
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
.+. ++++++++||++. .++||++++.+..+.+++.+. .++.||+||| ++|+++|.+.|.+++.+.+ . +|
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~ 296 (314)
T 1fnb_A 222 KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DW 296 (314)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CH
T ss_pred hCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hH
Confidence 765 6789999999753 478999999887777766554 5789999999 8999999999999998754 3 47
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
++++++|+++|||++|||
T Consensus 297 ~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 297 IEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCcEEEecC
Confidence 899999999999999999
|
| >3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=326.95 Aligned_cols=273 Identities=26% Similarity=0.461 Sum_probs=227.7
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.|....|+.++|+++++++..+...++++|+|+.+. .+.|+||.++.|.++...
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------- 80 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG-EIPYREGQSIGIIADGED------------------------- 80 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC-------------------------
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC-CCcccCCCEEEEECCCcC-------------------------
Confidence 466788899999999999987777789999999664 688999999999764310
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
..|
T Consensus 81 -----------------------------------------------------------~~g------------------ 83 (310)
T 3vo2_A 81 -----------------------------------------------------------KNG------------------ 83 (310)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
-+..+|+|||+|+|.. +++.++|+|+++.|.++.++.+.|.+|+||+++++|
T Consensus 84 -------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G------ 138 (310)
T 3vo2_A 84 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 138 (310)
T ss_dssp -------------------CBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTT------
T ss_pred -------------------CcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCC------
Confidence 1236799999999963 367999999988877777777789999999999999
Q ss_pred cEEEEEeeCCCCc-CCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNFK-LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F~-lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.|.+|.|.|. +|.+..+|+||||+|||||||+||++++......+ ...++++||||+|+.+ |++|.+||+++++
T Consensus 139 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 217 (310)
T 3vo2_A 139 ADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKE 217 (310)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred CEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHH
Confidence 8999999999654 56556789999999999999999999987521100 0136899999999998 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
.++ ++++++++||++. .++||++++.+..+.+++++. .++.||+||| ++|+++|+++|.+++.+++ + ++
T Consensus 218 ~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~ 292 (310)
T 3vo2_A 218 MAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DW 292 (310)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CH
T ss_pred hCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CH
Confidence 875 7789999999864 478999999988888888775 5789999999 8999999999999998764 3 48
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
++|+++|+++|||++|||
T Consensus 293 ~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 293 MQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHCCceEEecC
Confidence 899999999999999999
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=326.17 Aligned_cols=274 Identities=25% Similarity=0.399 Sum_probs=224.4
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 232 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 232 (558)
+....|+.++|+++++++.+++.+++++|+|++++..+.|+||+++.|.+++..
T Consensus 117 ~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~-------------------------- 170 (402)
T 2b5o_A 117 YRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED-------------------------- 170 (402)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE--------------------------
T ss_pred ccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC--------------------------
Confidence 556778999999999999888888999999998864589999999999876521
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHH
Q 008647 233 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312 (558)
Q Consensus 233 ~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l 312 (558)
.+|
T Consensus 171 ----------------------------------------------------------~~g------------------- 173 (402)
T 2b5o_A 171 ----------------------------------------------------------KNG------------------- 173 (402)
T ss_dssp ----------------------------------------------------------TTT-------------------
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 000
Q ss_pred HhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCC-CCcccCcccHHhhhcCCCCCCCCc
Q 008647 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 313 ~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~-~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
.+..+|+|||+|+|.. +++.++|+|+++.|.+|. ++...|.+|+||+++++|.
T Consensus 174 ------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~----- 230 (402)
T 2b5o_A 174 ------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGT----- 230 (402)
T ss_dssp ------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTC-----
T ss_pred ------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCC-----
Confidence 1136799999999863 257899999987665532 3345799999999999982
Q ss_pred cEEEEEeeCCCC-cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F-~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.|.+|.|.| .++.+..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+++++
T Consensus 231 d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~ 309 (402)
T 2b5o_A 231 DDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAA 309 (402)
T ss_dssp CCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHHHH
T ss_pred ceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHHHH
Confidence 389999999965 566555689999999999999999999887521000 0136899999999998 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
.+. ++++++++||++. .++||++++.+..+.+++++. .++.||+||| ++|+++|.++|.+++.+.+. .+
T Consensus 310 ~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~----~~ 384 (402)
T 2b5o_A 310 ENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL----NW 384 (402)
T ss_dssp HCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----CH
T ss_pred hCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----hH
Confidence 775 6789999999753 478999999988778877774 5789999999 89999999999999988754 47
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
.+++++|+++|||++|||
T Consensus 385 ~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 385 EEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCEEEecC
Confidence 899999999999999999
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=308.93 Aligned_cols=278 Identities=24% Similarity=0.340 Sum_probs=217.6
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCc---------EEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccE
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRS---------CIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELL 223 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~---------~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~ 223 (558)
+....++.++|+++++|++.++.++ +++|+|+.++..+.|+||+++.|.++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4556788999999999998766666 9999999876558999999999998774200
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhh
Q 008647 224 FSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVA 303 (558)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~ 303 (558)
+. + ..+
T Consensus 81 ---------g~------------~--------------------------------------~~~--------------- 86 (314)
T 2rc5_A 81 ---------KK------------A--------------------------------------KGL--------------- 86 (314)
T ss_dssp ---------HH------------H--------------------------------------TTC---------------
T ss_pred ---------cC------------c--------------------------------------cch---------------
Confidence 00 0 000
Q ss_pred cCCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCc-ccCcccHHhhhc
Q 008647 304 SQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRI-HKGVCSTWMKNA 379 (558)
Q Consensus 304 ~~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~-~~G~~S~~L~~l 379 (558)
.+| ++.+|+|||+|+|.. +++.++|+|+++.+.++.|+. +.|.+|+||+++
T Consensus 87 ---------~~~----------------~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l 141 (314)
T 2rc5_A 87 ---------ADV----------------GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDL 141 (314)
T ss_dssp ---------SCC----------------BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTC
T ss_pred ---------hhc----------------CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcC
Confidence 011 147899999999852 357899999987665544443 469999999999
Q ss_pred CCCCCCCCccEEEEEeeCCCCc-CCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCcccc
Q 008647 380 IPLEGNGDCSWAPIFIRPSNFK-LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 380 ~~G~~~~~~~~v~v~~p~g~F~-lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y 457 (558)
++| +.|.|.+|.|.|. ++. +..+|+||||+|||||||++|++++.... .....++++||||+|+.+ |++|
T Consensus 142 ~~G------d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~-~~~~~~~v~l~~g~r~~~-d~~~ 213 (314)
T 2rc5_A 142 KPG------DEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK-LIKFTGNITLVYGAPYSD-ELVM 213 (314)
T ss_dssp CTT------CEEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTC-SSCBCSCEEEEEEESSGG-GSCS
T ss_pred CCc------CEEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhc-ccCCCCcEEEEEEeCCHH-HHhH
Confidence 999 8999999999764 454 35689999999999999999999987521 001246899999999999 9999
Q ss_pred HHHHHHHHHcCCccEEEEEEecCCC-----CccchhhhhHhcHHHHHHhhhCCCEEEEe-CCCcchHHHHHHHHHHHHHH
Q 008647 458 EDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLSKEGYLYVC-GDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 458 ~~el~~~~~~~~~~~~~~a~Sr~~~-----~k~yvq~~l~~~~~~l~~~~~~~~~iyvC-Gp~~~M~~~v~~~L~~i~~~ 531 (558)
.+||+++++.+.++++++++||++. .++||++++.+..+.+.+.+.+...+|+| || ++|+++|++.|.+++.
T Consensus 214 ~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp-~~m~~~v~~~L~~~g~- 291 (314)
T 2rc5_A 214 MDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRFYICGGP-KGMEKGVIEEIQKISG- 291 (314)
T ss_dssp HHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESS-TTTHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeEEEeCCc-HHHHHHHHHHHHHHHh-
Confidence 9999999887557789999999743 36899999988777776655333445999 99 8999999999999875
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 532 QENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 532 ~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.++ .++.|+.+|+++|||++|+|
T Consensus 292 -~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 292 -NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp -CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred -ccc---hHHHHHHHHHHCCCEEEecC
Confidence 333 36889999999999999999
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=306.49 Aligned_cols=274 Identities=23% Similarity=0.382 Sum_probs=218.1
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 232 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 232 (558)
++...++.++|++.+.++.++...++++++|..+. ...|+||.++.|..+...
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~~~-------------------------- 75 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGEN-------------------------- 75 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBC--------------------------
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCCCc--------------------------
Confidence 45567789999999999965555689999999875 589999999988653320
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHH
Q 008647 233 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312 (558)
Q Consensus 233 ~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l 312 (558)
.. ..|
T Consensus 76 ~~--------------------------------------------------------~~g------------------- 80 (311)
T 3lo8_A 76 PK--------------------------------------------------------KPG------------------- 80 (311)
T ss_dssp TT--------------------------------------------------------STT-------------------
T ss_pred cc--------------------------------------------------------cCC-------------------
Confidence 00 000
Q ss_pred HhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCC----CcccCcccHHhhhcCCCCCC
Q 008647 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG----RIHKGVCSTWMKNAIPLEGN 385 (558)
Q Consensus 313 ~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~----~~~~G~~S~~L~~l~~G~~~ 385 (558)
.+..+|+|||+|+|.. +++.++|+|+++.+..+.. +...|.+|+||+++++|
T Consensus 81 ------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G--- 139 (311)
T 3lo8_A 81 ------------------APQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG--- 139 (311)
T ss_dssp ------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTT---
T ss_pred ------------------CCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCc---
Confidence 1246899999999964 2478999999764433221 12569999999999999
Q ss_pred CCccEEEEEeeCCCCcCCC--CCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHH
Q 008647 386 GDCSWAPIFIRPSNFKLPA--NPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELN 462 (558)
Q Consensus 386 ~~~~~v~v~~p~g~F~lp~--~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~ 462 (558)
+.|.+.+|.|.|.+.. +..+|+||||+|||||||++|++++......+ ...++++||||+|+.+ |++|.+||+
T Consensus 140 ---d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~ 215 (311)
T 3lo8_A 140 ---DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFT 215 (311)
T ss_dssp ---CEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHH
T ss_pred ---CEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHHHH
Confidence 8999999999776543 35689999999999999999999987521100 0136799999999998 999999999
Q ss_pred HHHHcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCH
Q 008647 463 NFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDS 537 (558)
Q Consensus 463 ~~~~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 537 (558)
++++.+. .+++++++||++. .++||++.+.+..+.+++++..++.||+||| ++|+++|+++|.+++.+.+
T Consensus 216 ~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g---- 290 (311)
T 3lo8_A 216 SYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG---- 290 (311)
T ss_dssp HHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT----
T ss_pred HHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc----
Confidence 9998875 7789999999864 4789999999887777777777899999999 8999999999999997765
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 008647 538 SKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 538 ~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++|++++++|+++|||++|||
T Consensus 291 ~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp CCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCcEEEecC
Confidence 358899999999999999999
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=302.61 Aligned_cols=291 Identities=21% Similarity=0.346 Sum_probs=210.5
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
-|..++|+.++|+++.+|+.++...+|+||+|+.++ .+.|.+|..++|.|+..+.. ...+ .
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~GQ~~~i~~~~~~~~-----~~~~-------------~ 69 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG-LFKYLEGHTCGIIPYYNELD-----NNPN-------------N 69 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT-CCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC-CcceecCcEeEEECCCcccc-----cccc-------------c
Confidence 366789999999999999988878899999999865 69999999999999876422 0000 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
+ . +-| .+. ..+..++.. ..++
T Consensus 70 --~-----~--~~~-----~~~----------------~~~~~~~~h---------------------------~~~~-- 90 (316)
T 3jqq_A 70 --Q-----I--NKD-----HNI----------------INTTNHTNH---------------------------NNIA-- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --c-----c--ccc-----ccc----------------ccccccccc---------------------------cccc--
Confidence 0 0 000 000 000000000 0000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCC---CCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP---TGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~---~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
. ...- +...+|+|||+|+|.. +.++|+|+++.|..+ .++.+.|.+|+||+++++|
T Consensus 91 -------~------~~~~-g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~G------ 148 (316)
T 3jqq_A 91 -------L------SHIK-KQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIN------ 148 (316)
T ss_dssp --------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTT------
T ss_pred -------c------ccCC-CcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCC------
Confidence 0 0011 4568999999999964 689999998765432 1234579999999999999
Q ss_pred cEEEEEeeCCCCcCCCC---CCCCEEEEccCccccchHHHHHHHHHHhhc------CCCCCCeEEEEeccCCCCccccHH
Q 008647 389 SWAPIFIRPSNFKLPAN---PSVPIIMVGPGTGLAPFRGFLQERMALKQD------GAQLGPALLFFGCRNRRMDFIYED 459 (558)
Q Consensus 389 ~~v~v~~p~g~F~lp~~---~~~plilIa~GtGIAP~~s~l~~~~~~~~~------~~~~~~i~L~~G~R~~~~d~~y~~ 459 (558)
+.|.|.+|.|.|.++.+ ..+|+||||+|||||||+||++++...... +...++++||||+|+.+ |++|.+
T Consensus 149 d~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~ 227 (316)
T 3jqq_A 149 DDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLN 227 (316)
T ss_dssp CEEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHH
T ss_pred CEEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHH
Confidence 89999999999999865 368999999999999999999998752110 01247899999999999 999999
Q ss_pred HHHHHHHcCC-ccEEEEEEecCCC---CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccC
Q 008647 460 ELNNFEEEGV-ISELILAFSREGS---QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQEN 534 (558)
Q Consensus 460 el~~~~~~~~-~~~~~~a~Sr~~~---~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~ 534 (558)
||+++++... ++++++++||++. .++||++.+.+....+++++. .++.||+||| ++|++++.++|.+.. .
T Consensus 228 eL~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~G----~ 302 (316)
T 3jqq_A 228 ELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSHD----Q 302 (316)
T ss_dssp HHHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHcC----C
Confidence 9999998765 6789999999853 578999999988878877664 6899999999 899999988887654 2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 535 VDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 535 ~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+++ ...+|++.|+|
T Consensus 303 ~~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 303 FDE----------KKKKRVHVEVY 316 (316)
T ss_dssp -CH----------HHHTTEEEEEC
T ss_pred Ccc----------cccccEEEEeC
Confidence 221 34578999886
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-28 Score=238.97 Aligned_cols=185 Identities=18% Similarity=0.242 Sum_probs=152.7
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+++ ..|.+|+||+ ++++| +.|.|.+|
T Consensus 43 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~---------~~G~~s~~l~~~l~~G------d~v~v~gP 106 (250)
T 1tvc_A 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVG------QVLSVKGP 106 (250)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSS------SEEEEEEE
T ss_pred CcCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEEC---------CCCCchHHHHhcCCCC------CEEEEEcC
Confidence 45789999998676 57899999999864 57899999843 2599999996 79999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+++||||+|||||||++|++++... + ...+++|+||+|+.+ |++|.+||+++++....++++++
T Consensus 107 ~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (250)
T 1tvc_A 107 LGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEW---T-APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKAC 181 (250)
T ss_dssp ECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHH---T-CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEEC
T ss_pred ccccccCccCCceEEEEEeccCHHHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765558999999999999999999998762 2 457899999999999 99999999999887777889999
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|++++ .+++|++.+.+.. .+. ..+..||+||| ++|++++++.|.+..
T Consensus 182 ~s~~~~~~~g~~g~v~~~l~~~~---~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~G 233 (250)
T 1tvc_A 182 VWHPSGDWEGEQGSPIDALREDL---ESS-DANPDIYLCGP-PGMIDAACELVRSRG 233 (250)
T ss_dssp CSSCSSCCSSSSSSSSHHHHHHH---HHS-SSSSEEEEESS-HHHHHHHHHHHHHHC
T ss_pred eccCCCCcCCccceehHHHHhhh---hcc-cCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 998633 4678887765422 111 24689999999 899999999887654
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=234.11 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=146.5
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHH-hhhcCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW-MKNAIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~-L~~l~~G~~~~~~~~v~v~~p~ 397 (558)
.+.+|||+.+.+|....|+|||+|+|.. ++.++|+|+++. .|.+|++ +.++++| +.|.+.+|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~~~~~l~~G------d~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGASE---------INLYAKAVMDRILKD------HQIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHH------SEEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEcc---------CCchhHHHHHhCCCC------CEEEEeCCc
Confidence 4578999999878778999999999865 578999998653 3666765 6669999 899999999
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
|.|.++.+..+++||||+|||||||++|++++... + ...+++|+||+|+.+ |++|.+||+++++.+.+++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALAR---N-PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHH---C-TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhc---C-CCCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 99988765568999999999999999999998762 2 457899999999999 999999999999877778899999
Q ss_pred ecCCC----CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHH-HHH
Q 008647 478 SREGS----QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTL-HTI 528 (558)
Q Consensus 478 Sr~~~----~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L-~~i 528 (558)
|++++ .++++++.+.+. +. ..+..+|+||| ++|++++++.| .+.
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~ 217 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQD------HGTLAEHDIYIAGR-FEMAKIARDLFCSER 217 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHH------CSCCTTCEEEEESC-HHHHHHHHHHHHHHS
T ss_pred cCCCCCcCCceeeHHHHHHHh------cCCccccEEEEECC-HHHHHHHHHHHHHHc
Confidence 98754 246777655432 11 14679999999 89999999888 553
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=239.46 Aligned_cols=182 Identities=18% Similarity=0.307 Sum_probs=141.2
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEcc--C--CC--CCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCC
Q 008647 333 LQPRYYSISSSPRFAPDRVHVTCALVYGP--T--PT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANP 406 (558)
Q Consensus 333 ~~pR~YSIaS~p~~~~~~i~l~v~vv~~~--~--~~--~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~ 406 (558)
..+|+|||+|+|.. .+.++|+|+++... + +. .+...|.+|+||+++++| +.|.|.+|.|.|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~G------d~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPG------DKVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTT------CEEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCC------CEEEEEecccCCcCCC-C
Confidence 45799999999965 57899999863210 0 00 012369999999999999 8999999999998863 4
Q ss_pred CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC----
Q 008647 407 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS---- 482 (558)
Q Consensus 407 ~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~---- 482 (558)
.+++||||+|||||||+||+++++.. .....+++|+||+|+.+ |++|.+||+++++.+.++++++++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~---~~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRT---LKTGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHT---SCCCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHh---cCCCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 67999999999999999999988762 11357899999999998 99999999999987777899999998642
Q ss_pred --CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 483 --QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 483 --~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.++++++.+.+.. +.+.. ..++.||+||| ++|+++|++.|.+..
T Consensus 232 ~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 278 (290)
T 2r6h_A 232 TGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENLG 278 (290)
T ss_dssp CSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHHT
T ss_pred CCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 2567776553211 11111 13568999999 899999999987654
|
| >2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-27 Score=232.85 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=148.5
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+| . ...|+|||+|.|.. .+.++|+|+++ ..|.+|+||+++++| +.|.+.+
T Consensus 41 ~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~---------~~G~~S~~l~~l~~G------d~v~v~g 104 (243)
T 2eix_A 41 GLPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVY---------EKGQMSQYIDHLNPG------DFLQVRG 104 (243)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC---------TTCHHHHHHHTCCTT------CEEEEEE
T ss_pred CcCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEc---------CCCCcchHhhcCCCC------CEEEEEC
Confidence 3578999998755 1 35799999999864 57899999843 259999999999999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++.+..+++||||+|||||||++|++++.. ......+++|+||+|+.+ |++|.+||+++++.+.+++++.
T Consensus 105 P~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~---~~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 180 (243)
T 2eix_A 105 PKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIK---NPKEKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYY 180 (243)
T ss_dssp EECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEE
T ss_pred CeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHh---CCCCCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 999999886556899999999999999999999874 111357899999999998 9999999999988777788999
Q ss_pred EEecCCC----CccchhhhhHhcHHHHHHhhh---CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS----QKEYVQHKMMDKAAQLWSLLS---KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~---~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++|++++ .++++++.+. .+.+. .+..||+||| ++|++++++.|.+.+
T Consensus 181 ~~s~~~~~~~g~~g~v~~~~l------~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~G 234 (243)
T 2eix_A 181 VLNNPPAGWTGGVGFVSADMI------KQHFSPPSSDIKVMMCGP-PMMNKAMQGHLETLG 234 (243)
T ss_dssp EEEECCTTCCSEESSCCHHHH------HHHSCCTTSSEEEEEESS-HHHHHHHHHHHHHHT
T ss_pred EeCCCCccccCcCCccCHHHH------HHhcCCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 9998643 2467764321 12222 3568999999 899999999987654
|
| >1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-27 Score=230.09 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=150.6
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE-
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~- 394 (558)
.+.+|||+.+.+|. ...|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPG------DEVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTT------CEEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCc------CEEEEec
Confidence 46799999987663 46799999999863 7899998843 259999999999999 899999
Q ss_pred eeCCCCcCCCCC-CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CccE
Q 008647 395 IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 472 (558)
Q Consensus 395 ~p~g~F~lp~~~-~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~-~~~~ 472 (558)
+|.|.|.++... .+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.+||+++++.. .+++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKD---LD-RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCS---CT-TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHh---hC-CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 999999887543 5799999999999999999998643 11 357899999999998 999999999998764 4668
Q ss_pred EEEEEecCCC---CccchhhhhHhcH-HHHHHh-h-hCCCEEEEeCCCcchHHHHHHHH-HHHHH
Q 008647 473 LILAFSREGS---QKEYVQHKMMDKA-AQLWSL-L-SKEGYLYVCGDAKGMARDVHRTL-HTIVQ 530 (558)
Q Consensus 473 ~~~a~Sr~~~---~k~yvq~~l~~~~-~~l~~~-~-~~~~~iyvCGp~~~M~~~v~~~L-~~i~~ 530 (558)
++.++|+++. .++++++.+.+.. +....+ . ..+..||+||| ++|+++|++.| .+.+.
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~G~ 231 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETRQM 231 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHcCC
Confidence 8999998864 2578888776532 222111 1 24679999999 89999999988 66543
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=238.54 Aligned_cols=182 Identities=25% Similarity=0.297 Sum_probs=151.9
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|. ..+|+|||+|.|. .+.++|+|+++ ..|.+|+||+ ++++| +.|.+.+|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~---------~~G~~S~~L~~~l~~G------d~v~v~gP 200 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAG------DKMSFTGP 200 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTT------CEEEEEEE
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEc---------CCCCchhhHhhccCCC------CEEEEECC
Confidence 45789999998676 5789999999986 58899999853 2599999996 69999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+ .+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.++|+++++...+++++++
T Consensus 201 ~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~---~~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 274 (338)
T 1krh_A 201 FGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQ---KG-SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTV 274 (338)
T ss_dssp ECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHH---HC-CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEeCCC-CceEEEEEccccHhHHHHHHHHHHH---cC-CCCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765 4899999999999999999999876 22 457899999999998 99999999999987777889999
Q ss_pred EecCCC---CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~---~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. .++++++.+.+.. + -..+..||+||| ++|++++++.|.+..
T Consensus 275 ~s~~~~~~~~~g~v~~~l~~~~--~---~~~~~~vy~CGp-~~m~~~v~~~l~~~G 324 (338)
T 1krh_A 275 VAHAESQHERKGYVTGHIEYDW--L---NGGEVDVYLCGP-VPMVEAVRSWLDTQG 324 (338)
T ss_dssp ETTCCSSSSEESCSGGGCCGGG--G---GGGCSEEEEEEE-HHHHHHHHHHHHHHT
T ss_pred EecCCCCCCccCccCHHHHHhh--c---ccCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 998764 2578888775311 1 124679999999 899999999887653
|
| >1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-27 Score=236.09 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=148.4
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+++.+.+..+....|.+|+||+++++| +.|.|.+
T Consensus 46 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~g 118 (275)
T 1umk_A 46 GLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIG------DTIEFRG 118 (275)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCcEEEEEEeeCCcEEEeccccCCccCC-CCeEEEEEEEeccCcccccCCCChhHHHHhcCCCC------CEEEEEc
Confidence 34689999886432 36899999999864 68999999976433322222469999999999999 8999999
Q ss_pred eCCCCcC--------CCC--------CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHH
Q 008647 396 RPSNFKL--------PAN--------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYED 459 (558)
Q Consensus 396 p~g~F~l--------p~~--------~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~ 459 (558)
|.|.|.+ +.+ ..+++||||+|||||||++|++++.. ......+++|+||+|+.+ |++|.+
T Consensus 119 P~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~---~~~~~~~v~l~~~~r~~~-d~~~~~ 194 (275)
T 1umk_A 119 PSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMK---DPDDHTVCHLLFANQTEK-DILLRP 194 (275)
T ss_dssp EECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEESSGG-GCTTHH
T ss_pred CccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHh---CCCCCcEEEEEEEcCCHH-HhhHHH
Confidence 9998754 321 35799999999999999999999864 211357899999999988 999999
Q ss_pred HHHHHHHcCC-ccEEEEEEecCCCC----ccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHH-HHHHHHHHHH
Q 008647 460 ELNNFEEEGV-ISELILAFSREGSQ----KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMAR-DVHRTLHTIV 529 (558)
Q Consensus 460 el~~~~~~~~-~~~~~~a~Sr~~~~----k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~-~v~~~L~~i~ 529 (558)
||+++++... .+++++++|+++.. +++|++.+.+. .......++.||+||| ++|++ ++++.|.+++
T Consensus 195 el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~G 266 (275)
T 1umk_A 195 ELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHVG 266 (275)
T ss_dssp HHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHHT
T ss_pred HHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 9999988754 56788899986542 46676543211 1000124689999999 89999 8999887654
|
| >4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=227.22 Aligned_cols=184 Identities=15% Similarity=0.292 Sum_probs=146.7
Q ss_pred CCChhHHHHhhCCCC-----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~ 392 (558)
...+|||+.+.+|.. .+|+|||+|+|. .+.++|+|+.+. .++...|.+|+||+ ++++| +.|.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~~----~~~~~~G~~S~~l~~~l~~G------~~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKREG----VGSDNPGLVSHYLHNNVKVG------DSVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECTT----TTSSSCCHHHHHHHHHCCTT------CEEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEee----cCCCCCCeehhHHHhcCCCC------CEEE
Confidence 457899999876632 369999999985 478999888431 11224699999997 59999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++ +..+++||||+|||||||++|++++.. ++ ... ++|+||+|+.+ |++|.+||+++++.+ .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~---~~-~~~-v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAK---QN-KSG-VTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHH---TT-CCS-EEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHH---cC-CCe-EEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 99999999988 557899999999999999999999876 22 223 99999999999 999999999998877 678
Q ss_pred EEEEEecCCCC---ccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ---KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 473 ~~~a~Sr~~~~---k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+++++|++... +++++..+. . +-..+..||+||| +.|++++++.|.+...
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp-~~m~~~v~~~l~~~g~ 225 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGP-IGFMQYVVKQLLALGV 225 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEEC-HHHHHHHHHHHHHHTC
T ss_pred EEEEEccCCCcccccCCccHHHe-e------ccCCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 99999986542 455554332 1 1125789999999 8999999999987653
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-26 Score=241.16 Aligned_cols=182 Identities=14% Similarity=0.233 Sum_probs=147.2
Q ss_pred CCChhHHHHhhCCC-----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAPH-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+.+|+ ...|+|||+|.|. ++.++|+|+.+ ..|.+|+||++ +++| +.|.
T Consensus 182 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~G------d~v~ 244 (396)
T 1gvh_A 182 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVG------DVVK 244 (396)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTT------CEEE
T ss_pred CCCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCC------CEEE
Confidence 45789999987653 3479999999986 57899999843 14999999998 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++.+..+|+||||+|||||||+||++++... + ...+++|+||+|+.+ |++|.+||+++++.+++++
T Consensus 245 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 319 (396)
T 1gvh_A 245 LVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKA---G-HTAQVNWFHAAENGD-VHAFADEVKELGQSLPRFT 319 (396)
T ss_dssp EEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEE
T ss_pred EEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhc---C-CCCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeE
Confidence 9999999998755678999999999999999999998762 2 457899999999999 9999999999998888888
Q ss_pred EEEEEecCCCC---------ccchhhh-hHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ---------KEYVQHK-MMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~---------k~yvq~~-l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++++|+++.. .+++... +.+.. .+ +++.||+||| ++|+++|++.|.+.+
T Consensus 320 ~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~-----~~-~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 320 AHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAF-----SD-PTMQFYLCGP-VGFMQFTAKQLVDLG 379 (396)
T ss_dssp EEEEESSCCHHHHHHTCCSEESSCCGGGSSSCC-----CC-TTCEEEEESC-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCccccccCccCccCcCCHHHHhhcc-----CC-CCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 99999987531 2344322 21100 11 3689999999 899999999887644
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-27 Score=237.64 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=155.6
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE-
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~- 394 (558)
.+.+|||+.+.+|. ...|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 108 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVG------DPVLIGK 108 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEES
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCC------CEEEEec
Confidence 45789999987662 3579999999985 46788888743 259999999999999 899999
Q ss_pred eeCCCCcCCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC----
Q 008647 395 IRPSNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV---- 469 (558)
Q Consensus 395 ~p~g~F~lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~---- 469 (558)
+|.|.|.++. ...+++||||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+++++.+.
T Consensus 109 gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 183 (271)
T 4fk8_A 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE----RFDKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGD 183 (271)
T ss_dssp CCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH----HCSEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHH
T ss_pred CCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCccccc
Confidence 9999998875 35689999999999999999999876531 346899999999998 9999999999877654
Q ss_pred ----ccEEEEEEecCCC-CccchhhhhHhcHHHHHHh-----hhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHH
Q 008647 470 ----ISELILAFSREGS-QKEYVQHKMMDKAAQLWSL-----LSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK 539 (558)
Q Consensus 470 ----~~~~~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~-----~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~ 539 (558)
.++++.++|+++. .++++++.+.+.. .+..+ ...++.||+||| ++|++++++.|.+.......+
T Consensus 184 ~~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~i---- 257 (271)
T 4fk8_A 184 VIREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGKN---- 257 (271)
T ss_dssp HHHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCBT----
T ss_pred cccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhhc----
Confidence 4578888888764 4678887765421 11111 124679999999 899999999998766544333
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 008647 540 AESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 540 a~~~~~~l~~~~Ry~~dvw 558 (558)
...|+|+.|.|
T Consensus 258 --------~~~~~~~~E~y 268 (271)
T 4fk8_A 258 --------SAPGHYVIERA 268 (271)
T ss_dssp --------TBCBSEEEEES
T ss_pred --------CCCCcEEEEEe
Confidence 33678888876
|
| >4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=237.16 Aligned_cols=185 Identities=14% Similarity=0.255 Sum_probs=149.0
Q ss_pred CCChhHHHHhhC--C--C---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccE
Q 008647 319 TPPIGVFFAAVA--P--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSW 390 (558)
Q Consensus 319 ~~~~~~~l~~~~--p--~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~ 390 (558)
.+.+|||+.+.+ | . ..+|+|||+|+|. ++.++|+|+.... .+....|.+|+||+ ++++| +.
T Consensus 183 ~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~G------d~ 251 (399)
T 4g1v_A 183 PITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEAA---RENFPAGLVSEYLHKDAKVG------DE 251 (399)
T ss_dssp CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCCC---BTTBCCCHHHHHHHHTCCTT------CE
T ss_pred CCCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEeccC---CCCCCCCEehhHHHhCCCCC------CE
Confidence 356899999874 4 3 3579999999986 4789999984321 01123699999997 69999 89
Q ss_pred EEEEeeCCCCcCCCC----CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 391 APIFIRPSNFKLPAN----PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 391 v~v~~p~g~F~lp~~----~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
|.+.+|.|.|.++.+ ..+|+||||+|||||||+||++++... + ..++++|+||+|+.+ |++|.++|+++++
T Consensus 252 v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~ 326 (399)
T 4g1v_A 252 IKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKC---N-PNRPIYWIQSSYDEK-TQAFKKHVDELLA 326 (399)
T ss_dssp EEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHH---C-TTSCEEEEEEESSST-TSTTHHHHHHHHT
T ss_pred EEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHc---C-CCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 999999999999865 578999999999999999999998762 2 457899999999998 9999999999998
Q ss_pred cCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 467 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 467 ~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
...++++++++|+++ +++.. +.+.+.+..++.||+||| ++|++++++.|.+.+
T Consensus 327 ~~~~~~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (399)
T 4g1v_A 327 ECANVDKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGS-LAFMQAMIGHLKELE 379 (399)
T ss_dssp TCSSEEEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred hCCCcEEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888888999999864 44432 223333445789999999 899999999987654
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-26 Score=227.73 Aligned_cols=188 Identities=17% Similarity=0.217 Sum_probs=148.7
Q ss_pred CCChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 43 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~~---------~~G~~s~~l~~l~~G------d~v~v~ 105 (272)
T 2bgi_A 43 RFRSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIKV---------PDGPLTSRLQHIKVG------EQIILR 105 (272)
T ss_dssp CCCTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEE
T ss_pred ccCCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEEc---------cCCCchhHHHhCCCC------CEEEEe
Confidence 45789999987662 3579999999986 37899988743 259999999999999 899999
Q ss_pred -eeCCCCcCCCCC-CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----
Q 008647 395 -IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELN-NFEE----- 466 (558)
Q Consensus 395 -~p~g~F~lp~~~-~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~-~~~~----- 466 (558)
+|.|.|.++... .+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.+||+ ++++
T Consensus 106 ~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~ 180 (272)
T 2bgi_A 106 PKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEA---YE-KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIG 180 (272)
T ss_dssp EEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGG---GT-SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTT
T ss_pred eCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhh
Confidence 899999887543 5799999999999999999998654 21 357899999999998 999999999 9987
Q ss_pred c--CCccEEEEEEecCCC-CccchhhhhHhcH-HHHHHh--h-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 467 E--GVISELILAFSREGS-QKEYVQHKMMDKA-AQLWSL--L-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 467 ~--~~~~~~~~a~Sr~~~-~k~yvq~~l~~~~-~~l~~~--~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
. ...++++.++|+++. .++++++.+.+.. .....+ + ..++.||+||| ++|++++++.|.+.+
T Consensus 181 ~~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 249 (272)
T 2bgi_A 181 ELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLESYG 249 (272)
T ss_dssp TTSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHTTT
T ss_pred cccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 3 356688899998743 4678888776432 111111 1 24679999999 899999999887644
|
| >1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-26 Score=226.51 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=139.0
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|++++ .|.+|+||+++++| +.|.+.+
T Consensus 33 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~S~~l~~l~~G------d~v~v~g 96 (262)
T 1ep3_B 33 MDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGD---------ETTGTYKLSKLESG------AKVDVMG 96 (262)
T ss_dssp CCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCC---------TTSHHHHHHTCCTT------CEEEEEE
T ss_pred cCCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEec---------CCchHHHHhcCCCC------CEEEEEc
Confidence 35789999987664 68999999999864 578999998432 48999999999999 8999999
Q ss_pred eCCC-CcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 396 RPSN-FKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 396 p~g~-F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
|.|. |.++.+ ..+++||||+|||||||++|++++... ..+++|+||+|+++ |++|.+||++++.. ++
T Consensus 97 P~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~------~~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~ 165 (262)
T 1ep3_B 97 PLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKT------GCQMTILLGFASEN-VKILENEFSNLKNV----TL 165 (262)
T ss_dssp EESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHH------TCEEEEEEEESSGG-GCCCHHHHHTSTTE----EE
T ss_pred ccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHc------CCeEEEEEEcCCHH-HhhhHHHHhhhccC----cE
Confidence 9996 998764 367999999999999999999998761 26899999999999 99999999986542 34
Q ss_pred EEEEecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 474 ILAFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 474 ~~a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
+++ ++++. .++++++.+.+. +.+++.||+||| ++|++++++ |.+.
T Consensus 166 ~~~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 166 KIA-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYDQ 212 (262)
T ss_dssp EEE-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTTT
T ss_pred EEE-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHhC
Confidence 443 44432 357888755432 345689999999 899999998 7643
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-25 Score=234.26 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=147.1
Q ss_pred CCChhHHHHhhCC--C---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+.+| . ..+|+|||+|.|. .+.++|+|+.+. .++.+.|.+|+||++ +++| +.|.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~----~~~~~~G~~S~~L~~~l~~G------d~v~ 251 (403)
T 1cqx_A 184 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREG----GGPQPPGYVSNLLHDHVNVG------DQVK 251 (403)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCC----BTTBCCCHHHHHHHHHCCTT------CEEE
T ss_pred CCCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECC----CCCCCCCeehHHHhhCCCCC------CEEE
Confidence 4578999998755 2 2479999999986 578999998542 112235999999995 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++.+..+|+||||+|||||||+||++++.. ....+++|+||+|+.+ |++|.+||+++++.+.+++
T Consensus 252 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 325 (403)
T 1cqx_A 252 LAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-----APPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLD 325 (403)
T ss_dssp ECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-----SSCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEE
T ss_pred EecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-----CCCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcE
Confidence 999999999875567899999999999999999998763 1457899999999999 9999999999998877788
Q ss_pred EEEEEecCCCCc----cchh-hhhHhcHHHHHHh-hhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQK----EYVQ-HKMMDKAAQLWSL-LSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~k----~yvq-~~l~~~~~~l~~~-~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++++|+++... .|.+ .++... .+.+. ..+++.||+||| ++|+++|++.|.+.+
T Consensus 326 ~~~~~s~~~~~~~~~~~~~~~G~i~~~--~l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 385 (403)
T 1cqx_A 326 LFVFYDQPLPEDVQGRDYDYPGLVDVK--QIEKSILLPDADYYICGP-IPFMRMQHDALKNLG 385 (403)
T ss_dssp EEEEESSCCTTCCBTTTBSEESSCCGG--GSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCcccccccccCcCCCcCHH--HHhhccCCCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 999999875421 1221 122111 11111 113789999999 899999999887654
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-26 Score=227.35 Aligned_cols=191 Identities=15% Similarity=0.229 Sum_probs=143.1
Q ss_pred CCChhHHHHhhCC---CCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCC-cccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p---~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~-~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++ ...+|+|||+|+|.. ++.++|+|+++.. ...++ ...|.+|+||+++++| +.|.+.
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~G------d~v~v~ 113 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVG------SYIDVK 113 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTT------CEEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCC------CEEEEE
Confidence 4578999988643 236799999999864 5889999986521 11111 1259999999999999 899999
Q ss_pred eeCCC--------CcCCC--CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHH
Q 008647 395 IRPSN--------FKLPA--NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNF 464 (558)
Q Consensus 395 ~p~g~--------F~lp~--~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~ 464 (558)
+|.|. |.++. ...+++||||+|||||||++|++++.... .....+++|+||+|+.+ |++|.+||+++
T Consensus 114 gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~--~~~~~~v~l~~~~r~~~-d~~~~~el~~l 190 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQ--PEDHTEMHLVYANRTED-DILLRDELDRW 190 (270)
T ss_dssp EEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTT--TTCCCEEEEEEEESCGG-GCTTHHHHHHH
T ss_pred CCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcC--CCCCcEEEEEEEcCCHH-HcchHHHHHHH
Confidence 99996 55553 24679999999999999999999987621 11357899999999999 99999999999
Q ss_pred HHcCC-ccEEEEEEecC---CC----CccchhhhhHhcHHHHHHhhh---CCCEEEEeCCCcchHHH-HHHHHHH
Q 008647 465 EEEGV-ISELILAFSRE---GS----QKEYVQHKMMDKAAQLWSLLS---KEGYLYVCGDAKGMARD-VHRTLHT 527 (558)
Q Consensus 465 ~~~~~-~~~~~~a~Sr~---~~----~k~yvq~~l~~~~~~l~~~~~---~~~~iyvCGp~~~M~~~-v~~~L~~ 527 (558)
++... .+++++++|++ +. .++++++.+.+ +.+. .++.||+||| ++|+++ +++.|.+
T Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~------~~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 191 AAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLR------EHVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHH------HHSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHH------HhcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 87754 46788888873 21 25677664322 1222 3468999999 899996 5777764
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-26 Score=226.35 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=147.3
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE-
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~- 394 (558)
.+.+|||+.+.+|. ...|+|||+|.|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~~~~~i~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 92 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIKV---------PDGPLTSRLQHLKEG------DELMVSR 92 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEECS
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCC--CCeEEEEEEEe---------CCCcchhHHHhCCCC------CEEEEec
Confidence 45789999987552 3679999999986 37899988743 259999999999999 899999
Q ss_pred eeCCCCcCCCCC-CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----c
Q 008647 395 IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELN-NFEE-----E 467 (558)
Q Consensus 395 ~p~g~F~lp~~~-~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~-~~~~-----~ 467 (558)
+|.|.|.++... .+++||||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+ ++++ .
T Consensus 93 gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 167 (257)
T 2qdx_A 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE----RYEKVILVHGVRWVS-ELAYADFITKVLPEHEYFGD 167 (257)
T ss_dssp CCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH----HCSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHH
T ss_pred CCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC----CCCeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhc
Confidence 899999887542 579999999999999999999876521 246899999999998 999999999 8765 2
Q ss_pred --CCccEEEEEEecCCC-CccchhhhhHhcH-HHHHHh--h-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 468 --GVISELILAFSREGS-QKEYVQHKMMDKA-AQLWSL--L-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 468 --~~~~~~~~a~Sr~~~-~k~yvq~~l~~~~-~~l~~~--~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
...++++.++|+++. .++++++.+.+.. .....+ + ..++.||+||| ++|++++++.|.+.+
T Consensus 168 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 235 (257)
T 2qdx_A 168 QVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDSFG 235 (257)
T ss_dssp HHHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred cCCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 245678889998753 3678888776432 111111 1 24679999999 899999999887644
|
| >2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-25 Score=226.34 Aligned_cols=174 Identities=16% Similarity=0.204 Sum_probs=139.0
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCc-ccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGV-CSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~-~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|. +|+||+ ++++| +.|.|.+|
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~~---------~~G~g~S~~L~~~l~~G------d~v~v~gP 101 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRD---------SNGRGGSISFIDDTSEG------DAVEVSLP 101 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECC---------TTSCSHHHHHHHSCCTT------CEEEECCC
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEEe---------cCCcchhHHHHhcCCCC------CEEEEeCC
Confidence 3578999999877678999999999864 57899999843 2487 899999 69999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+ .+++||||+|||||||++|++++.. .+ ..+++|+||+|+.+ |++|.+||++++ .+.. +.+.
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~---~~--~~~v~l~~~~r~~~-~~~~~~el~~l~-~~~~--~~~~ 171 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRA---EG--LRSFRLYYLTRDPE-GTAFFDELTSDE-WRSD--VKIH 171 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHH---HC--SSEEEEEEEESCGG-GCTTHHHHHSTT-TTTT--EEEE
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHH---cC--CCcEEEEEEECChh-hhHHHHHHhcCc-cCCe--EEEE
Confidence 999999864 6799999999999999999999876 22 27899999999999 999999999885 2333 4455
Q ss_pred EecCCC-CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHH
Q 008647 477 FSREGS-QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 527 (558)
Q Consensus 477 ~Sr~~~-~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~ 527 (558)
++++.. .+.++++++.. ...+..||+||| ++|+++|++.|.+
T Consensus 172 ~~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 172 HDHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp ECTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred ECCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 565432 23344443322 124679999999 8999999998876
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=208.84 Aligned_cols=107 Identities=23% Similarity=0.461 Sum_probs=99.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||+|++|+||+.|+++|..... .+++++|||||+||++|++||.+++.++++|+++||++|+|+++
T Consensus 86 ~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~~---~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~ 162 (219)
T 3hr4_A 86 EERLLLVVTSTFGNGDCPGNGEKLKKSLFMLKE---LNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGE 162 (219)
T ss_dssp TCSEEEEEEECBTTTBCCGGGHHHHHHHHHCCC---CSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEE
T ss_pred cCCeEEEEEeccCCCcCCHHHHHHHHHHHhcch---hhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEE
Confidence 467999999999999999999999999987542 28899999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCC
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDED 111 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~ 111 (558)
+|++.+.+++|+.|.+++|++|++.++.+.
T Consensus 163 ~D~~~~~e~~~~~W~~~l~~~l~~~~~~~~ 192 (219)
T 3hr4_A 163 GDELSGQEDAFRSWAVQTFKAACETFDVRG 192 (219)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999889999999999999999999987644
|
| >2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=187.04 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=122.1
Q ss_pred CChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 320 PPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 320 ~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
..+|||+.+.+|. ...|+|||+|.+. +.++|.|+++. ..|.+|+||+++++| +.|.|.+
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~--------~~G~~S~~l~~l~~G------d~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHD--------TDGPASSWAKTAQVG------ELIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCS--------SCCHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeC--------CCCcHHHHHhhCCCC------CEEEEec
Confidence 4689999997664 4679999999763 57777776431 128999999999999 9999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++.+ .++++|||+|||||||++|++++. ...++++++++|+.+ |....+ ....++++.
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~-------~~~~~~~~~~~~~~~-d~~~l~-------~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLP-------NNAVGYAVIEVLSEA-DIQPLV-------HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSC-------TTCEEEEEEEESSGG-GCCCCC-------CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCC-------CCCcEEEEEEECCHH-Hhhccc-------CCCCcEEEE
Confidence 9999998754 469999999999999999999863 235678999999877 665321 223456666
Q ss_pred EEecCCCC-ccchhhhhHhcHHHHHHh-h-hCCCEEEEeCCCcchHHHHHHHHH-HHH
Q 008647 476 AFSREGSQ-KEYVQHKMMDKAAQLWSL-L-SKEGYLYVCGDAKGMARDVHRTLH-TIV 529 (558)
Q Consensus 476 a~Sr~~~~-k~yvq~~l~~~~~~l~~~-~-~~~~~iyvCGp~~~M~~~v~~~L~-~i~ 529 (558)
+++.+... ...+.+.+. ++ . ..+..+|+||| ++|++++++.|. +..
T Consensus 166 ~~~~~~~~~g~~~~~~l~-------~~~~~~~~~~vy~CGP-~~m~~av~~~l~~~~G 215 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIA-------QLPWLAGEPAVWIACE-FNSMRALRRHFKQAHA 215 (252)
T ss_dssp EECSSCCTTCHHHHHHHT-------TSCCCSSCEEEEEEEE-HHHHHHHHHHHHHHCC
T ss_pred EeCCCCCcccHHHHHHHH-------hccCCCCCcEEEEEcC-HHHHHHHHHHHHHhcC
Confidence 66544321 112222221 11 1 13568999999 899999999987 443
|
| >3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-19 Score=161.13 Aligned_cols=128 Identities=9% Similarity=-0.020 Sum_probs=83.9
Q ss_pred cCCCCCCCCccE-EEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCcccc
Q 008647 379 AIPLEGNGDCSW-APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 379 l~~G~~~~~~~~-v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y 457 (558)
+++| +. +.+.+|.|.|.... ..++++||||||||||++||+++... + ..+++|+ |+|+.+ |++|
T Consensus 1 L~~G------d~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~---~---~~~v~l~-g~r~~~-d~~~ 65 (158)
T 3lrx_A 1 MKEG------DSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQE---I---GNDVTTL-HVTFEP-MVIL 65 (158)
T ss_dssp -----------------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHH---H---TCEEEEE-EECBGG-GCCS
T ss_pred CcCC------CEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHh---c---CCcEEEE-EeCCHH-HhhH
Confidence 4677 89 59999999754433 46799999999999999999998865 2 2479999 999999 9999
Q ss_pred HHHHHHHHHcCCccEEEEEEecCCC--------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 458 EDELNNFEEEGVISELILAFSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 458 ~~el~~~~~~~~~~~~~~a~Sr~~~--------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.+||++++.+ ..+..+++++.. .++++++.+.+... + .+...||+||| ++|++++.+.|.+..
T Consensus 66 ~~el~~l~~~---~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~---~--~~~~~vy~CGP-~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 66 KEELEKAVTR---HIVEPVPLNPNQDFLANMKNVSQRLKEKVRELLE---S--EDWDLVFMVGP-VGDQKQVFEVVKEYG 136 (158)
T ss_dssp HHHHHHHSSE---EEECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHH---H--SCCSEEEEESC-HHHHHHHHHHHGGGT
T ss_pred HHHHHHHHhc---eEEEEeeccccccCCCCCCCCcccccHHHHHhhc---c--CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9999998642 222222333211 13455554332111 1 14568999999 999999999887654
Q ss_pred H
Q 008647 530 Q 530 (558)
Q Consensus 530 ~ 530 (558)
.
T Consensus 137 v 137 (158)
T 3lrx_A 137 V 137 (158)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=161.07 Aligned_cols=100 Identities=26% Similarity=0.651 Sum_probs=90.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||| +|++|+|+..|+++|..... ..|++++|||||+||++| ++||.+++.++++|+++||+++.+++
T Consensus 67 ~~d~vi~g~~Ty-~G~~p~~~~~fl~~L~~~~~--~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~ 143 (191)
T 1bvy_F 67 REGAVLIVTASY-NGHPPDNAKQFVDWLDQASA--DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRG 143 (191)
T ss_dssp SSSEEEEEECCB-TTBCCTTTHHHHHHHHTCCS--SCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEE
T ss_pred hCCeEEEEEeec-CCCcCHHHHHHHHHHHhccc--hhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccE
Confidence 478999999999 99999999999999986532 238899999999999999 79999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELVWPELD 104 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l~~~l~ 104 (558)
++|+..+.+.+++.|.+.+|++|.
T Consensus 144 ~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 144 EADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHHHHhc
Confidence 999855677779999999999996
|
| >3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=151.06 Aligned_cols=121 Identities=9% Similarity=0.009 Sum_probs=84.4
Q ss_pred EEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc
Q 008647 391 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI 470 (558)
Q Consensus 391 v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~ 470 (558)
+.|.+|.|.|....+ .++++||||||||||++||+++... ...+++|+ |+|+++ |++|.+||++++++
T Consensus 3 ~~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~------~~~~v~l~-g~R~~~-~~~~~~el~~l~~~--- 70 (142)
T 3lyu_A 3 LNVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQE------IGNDVTTL-HVTFEP-MVILKEELEKAVTR--- 70 (142)
T ss_dssp ----CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHH------TTCEEEEE-EEEEGG-GCCSHHHHHTTSSE---
T ss_pred eeeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHh------cCCcEEEE-EeCCHH-HhhHHHHHHHHHhh---
Confidence 568899997665533 6799999999999999999998775 23579999 999999 99999999987542
Q ss_pred cEEEEEEecCCC--------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 471 SELILAFSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 471 ~~~~~a~Sr~~~--------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
..+..+++++.. .+++|.+.+.+.. .. .+...||+||| ++|+++|.+.+.+..
T Consensus 71 ~~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~----~~-~~~~~vy~CGP-~~Mm~av~~~l~~~~ 131 (142)
T 3lyu_A 71 HIVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ES-EDWDLVFMVGP-VGDQKQVFEVVKEYG 131 (142)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH----HS-SCCSEEEEESC-HHHHHHHHHHHHHHT
T ss_pred eEEEEeecccccCCCCCCCCCccchhHHHHHhc----cc-CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 223334444321 1344544332211 10 13468999999 999999999888765
|
| >3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-18 Score=159.72 Aligned_cols=136 Identities=13% Similarity=0.205 Sum_probs=93.7
Q ss_pred EEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc---CCCCCCeEEEEeccCCCCccc-cHHHHHHHHHc
Q 008647 392 PIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD---GAQLGPALLFFGCRNRRMDFI-YEDELNNFEEE 467 (558)
Q Consensus 392 ~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~---~~~~~~i~L~~G~R~~~~d~~-y~~el~~~~~~ 467 (558)
.|.+|+|.|.++....+++||||||||||||+||++++...... +....+++|+||+|+.+ +++ |.++|+++++.
T Consensus 2 ~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~ 80 (186)
T 3a1f_A 2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQ 80 (186)
T ss_dssp CTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHH
T ss_pred eEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHH
Confidence 45789998876434467999999999999999999998764211 11357899999999999 888 99999999875
Q ss_pred ------CCccEEEEEEecCCCC---ccchh-----hhh----------HhcHHHHHH-h---hh-CCCEEEEeCCCcchH
Q 008647 468 ------GVISELILAFSREGSQ---KEYVQ-----HKM----------MDKAAQLWS-L---LS-KEGYLYVCGDAKGMA 518 (558)
Q Consensus 468 ------~~~~~~~~a~Sr~~~~---k~yvq-----~~l----------~~~~~~l~~-~---~~-~~~~iyvCGp~~~M~ 518 (558)
..++++++++|++... +.|++ +.+ +-+.+.+.+ + .. .+..||+||| ++|+
T Consensus 81 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~ 159 (186)
T 3a1f_A 81 MQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALA 159 (186)
T ss_dssp HHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHH
T ss_pred HhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHH
Confidence 3356788889886321 11111 000 001122222 1 11 3578999999 8999
Q ss_pred HHHHHHHHHHH
Q 008647 519 RDVHRTLHTIV 529 (558)
Q Consensus 519 ~~v~~~L~~i~ 529 (558)
++|++.|.+..
T Consensus 160 ~~v~~~l~~~g 170 (186)
T 3a1f_A 160 ETLSKQSISNS 170 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999988765
|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-17 Score=151.07 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=90.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||.|++|+++..|+++|.....+ +++++|+|||+||++|++||.+++.++++|+++||+++.+.+.
T Consensus 46 ~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~---l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~ 122 (147)
T 2hna_A 46 ASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPD---LSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLK 122 (147)
T ss_dssp SEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCC---TTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBC
T ss_pred cCCeEEEEECccCCCCCChhHHHHHHHHHhhccc---cCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEE
Confidence 4689999999999999999999999999864222 8899999999999999999999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
+|.+. +.++.+++|.+++++.|
T Consensus 123 ~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 123 INILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp CCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHh
Confidence 99876 67889999999998876
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=146.82 Aligned_cols=103 Identities=28% Similarity=0.463 Sum_probs=91.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||.|++|++++.|+++|..... ..|++++|+|||+||++|.+||.+++.++++|+++|++++.+.+.
T Consensus 56 ~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~--~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~ 133 (167)
T 1ykg_A 56 SEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKA--PKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVD 133 (167)
T ss_dssp GCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTC--CCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEE
T ss_pred cCCeEEEEEcccCCCcCChhHHHHHHHHHhccc--cccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeeccee
Confidence 478999999999999999999999999976321 238899999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhc
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLR 108 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~ 108 (558)
+|+ +.+..++.|.+++++.|...++
T Consensus 134 ~d~--~~~~~~~~w~~~l~~~l~~~~~ 158 (167)
T 1ykg_A 134 ADV--EYQAAASEWRARVVDALKSRAP 158 (167)
T ss_dssp ECT--TCHHHHHHHHHHHHHHHHTCC-
T ss_pred cCC--CcHHHHHHHHHHHHHHHHhhcC
Confidence 883 4789999999999999876544
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-14 Score=129.64 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCcEEEEEeccCCC--CCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGD--GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~--G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.++.+||++||||. |++|++++.|+++|.... +.+++|+|||+||++|..||.+++.++++|+++|++.+.+.
T Consensus 49 ~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~-----l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~ 123 (148)
T 3f6r_A 49 GYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEG 123 (148)
T ss_dssp TCSEEEEEECEECSSSCEECHHHHHHHTTGGGTC-----CTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCC
T ss_pred cCCEEEEEecccCCCCCCCcHHHHHHHHHhhccC-----CCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecc
Confidence 57899999999999 999999999999997643 88999999999999999999999999999999999999888
Q ss_pred cccCCCC-CchhHHHHHHHHHHHH
Q 008647 80 GLGDDDQ-CIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 ~~~d~~~-~~~~~~~~W~~~l~~~ 102 (558)
..++... +....++.|.+++++.
T Consensus 124 ~~~~~~p~~~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 124 LKMEGDASNDPEAVASFAEDVLKQ 147 (148)
T ss_dssp EEEESSGGGCHHHHHHHHHHHHHT
T ss_pred eEeecCcchHHHHHHHHHHHHHhh
Confidence 8777654 2567788888777653
|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=6.7e-13 Score=119.74 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=83.1
Q ss_pred CcEEEEEeccCCCCC--CCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 3 HSIYLRLTCRYGDGE--PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~--~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
++.+||+++|||.|. +|++++.|+++|.... +.+++++|||+||++|..||.+.+.++++|.++|++.+.+..
T Consensus 49 ~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~-----l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~ 123 (147)
T 1f4p_A 49 FDLVLLGCSTWGDDSIELQDDFIPLFDSLEETG-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGL 123 (147)
T ss_dssp CSEEEEEECEECSSSCEECTTTHHHHHTGGGSC-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCE
T ss_pred CCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcc-----cCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhccc
Confidence 889999999999999 9999999999997643 789999999999999977999999999999999999998877
Q ss_pred ccCCCCC-chhHHHHHHHHHHH
Q 008647 81 LGDDDQC-IEDDFTAWRELVWP 101 (558)
Q Consensus 81 ~~d~~~~-~~~~~~~W~~~l~~ 101 (558)
.+|...+ ....+.+|.+++++
T Consensus 124 ~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 124 RIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp EEESCGGGGHHHHHHHHHHHHT
T ss_pred ccccCchhHHHHHHHHHHHHHh
Confidence 7775543 56788999888764
|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=122.83 Aligned_cols=101 Identities=21% Similarity=0.387 Sum_probs=85.1
Q ss_pred CCcEEEEEeccCCCCCCC--------ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhC
Q 008647 2 LHSIYLRLTCRYGDGEPT--------DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQ 71 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p--------~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~l 71 (558)
.|+.|||+++|||.|++| ++++.|+++|.... |++++++|||+||+. | ++||.+++.++++|.++
T Consensus 47 ~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~l~~~~-----l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~ 121 (182)
T 2wc1_A 47 AYDFLILGTPTLGDGQLPGLSANAASESWEEFLPRIADQD-----FSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDR 121 (182)
T ss_dssp HCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGGGTTCC-----CTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTT
T ss_pred hCCeEEEEEeeCCCCCCCccccccchhHHHHHHHHhhhcc-----CCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHC
Confidence 478999999999999999 99999999986533 889999999999998 8 58999999999999999
Q ss_pred CCeEeecC-------------------ccc-CCCC---CchhHHHHHHHHHHHHHHHhh
Q 008647 72 GGARLVPL-------------------GLG-DDDQ---CIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 72 Ga~~i~~~-------------------~~~-d~~~---~~~~~~~~W~~~l~~~l~~~~ 107 (558)
||+.+.+. +.+ |..+ ..+..++.|.++|++.|...+
T Consensus 122 G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~~ 180 (182)
T 2wc1_A 122 GANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQDNQAALTPERLKGWLSLIAADFGLVL 180 (182)
T ss_dssp TCEEECCEECTTSCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCCC
T ss_pred CCEEEEeecCCCcCcccchhhhcCceeeeeccCCCCccccHHHHHHHHHHHHHHHhccc
Confidence 99988752 443 3222 258889999999999886543
|
| >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=121.78 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=82.6
Q ss_pred CCcEEEEEeccCCCCCCC--------ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhC
Q 008647 2 LHSIYLRLTCRYGDGEPT--------DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQ 71 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p--------~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~l 71 (558)
.|+.+||++||||.|++| ++++.|+++|.... |++++++|||+||+. | .+||.+++.++++|.++
T Consensus 46 ~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~~~~-----l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~ 120 (179)
T 1yob_A 46 QYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEGLD-----FSGKTVALFGLGDQVGYPENYLDALGELYSFFKDR 120 (179)
T ss_dssp TCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHTTCC-----CTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTT
T ss_pred cCCEEEEEeccCCCCcCCcccccccchHHHHHHHHhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHC
Confidence 588999999999999999 99999999997643 889999999999998 9 58999999999999999
Q ss_pred CCeEeecC-------------------cc-cCCCC---CchhHHHHHHHHHHHHHH
Q 008647 72 GGARLVPL-------------------GL-GDDDQ---CIEDDFTAWRELVWPELD 104 (558)
Q Consensus 72 Ga~~i~~~-------------------~~-~d~~~---~~~~~~~~W~~~l~~~l~ 104 (558)
||+.+.+. +. .|..+ ..++.++.|.+++++.|.
T Consensus 121 G~~~~~~~~~~g~~~~~s~~~~~~~f~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 121 GAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp TCEEECCBCCTTCCCSCCTTBSSSSBSSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred CCEEEEeeccCCCCcccchhhhcCceeccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 99988653 32 34322 368899999998876553
|
| >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=117.70 Aligned_cols=97 Identities=24% Similarity=0.345 Sum_probs=81.2
Q ss_pred CCcEEEEEeccCCCCCC----CccHHHHH-HHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhCCCe
Q 008647 2 LHSIYLRLTCRYGDGEP----TDNAARFY-KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGA 74 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~----p~n~~~f~-~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~lGa~ 74 (558)
.|+.+||++||||.|++ |+++..|+ +.|.... |++++|+|||+||+. | ++||.+++.++++|.++||+
T Consensus 45 ~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~~~-----l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~ 119 (173)
T 2fcr_A 45 DYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPEVD-----MKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAK 119 (173)
T ss_dssp GCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGGCC-----CTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCE
T ss_pred cCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccccc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 47899999999999999 99999999 8887644 889999999999998 8 68999999999999999999
Q ss_pred EeecC-------------------cc-cCC--CC-CchhHHHHHHHHHHHHH
Q 008647 75 RLVPL-------------------GL-GDD--DQ-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 75 ~i~~~-------------------~~-~d~--~~-~~~~~~~~W~~~l~~~l 103 (558)
.+.+. +. .|. ++ ..+..++.|.+++.+.|
T Consensus 120 ~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 120 PVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EECCBCGGGSCCSCCTTEETTEESSEEEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred EEeecccCCcccccchhhhCCeeeeeeecCCCCccccHHHHHHHHHHHHHHh
Confidence 88652 11 121 22 46888999999987765
|
| >1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=119.02 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+++||+++|||.|++|+++..|+++|.... |++++++|||+||+. | ++||.+.+.++++|.+.||+.+...
T Consensus 45 ~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~-----l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~ 119 (175)
T 1ag9_A 45 AYDILLLGIPTWYYGEAQCDWDDFFPTLEEID-----FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHW 119 (175)
T ss_dssp TCSEEEEECCEETTTEECHHHHHHHHHHTTCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCE
T ss_pred hCCEEEEEEeecCCCcChHHHHHHHhhhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 58899999999999999999999999997643 889999999999986 8 7899999999999999999887531
Q ss_pred --------------------cc-cCCCC---CchhHHHHHHHHHHHHHHH
Q 008647 80 --------------------GL-GDDDQ---CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 80 --------------------~~-~d~~~---~~~~~~~~W~~~l~~~l~~ 105 (558)
+. .|... ..+..++.|.+++++.+..
T Consensus 120 ~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 120 PTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp ECTTCCCSCCSCEEETTEESSEEECTTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred cCCCcccccchheeeCCeEEeeecCCCCcccccHHHHHHHHHHHHHHhhh
Confidence 11 22211 2567899999999988765
|
| >2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-12 Score=116.52 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=75.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-ch-HHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y~-~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+.+||++||||.|++|+++..|+++|.... |++++|+|||+||+. |. +||.+++.++++|.+ |+.+.+.
T Consensus 44 ~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~~~-----l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~ 116 (164)
T 2bmv_A 44 SFTKVILVAPTAGAGDLQTDWEDFLGTLEASD-----FANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQT 116 (164)
T ss_dssp TCSEEEEEEEEETTTEECHHHHHHHTTCCTHH-----HHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCE
T ss_pred hCCEEEEEECCcCCCcCcHHHHHHHHHHhhhh-----cCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccc
Confidence 58899999999999999999999999886532 778999999999995 95 799999999999998 7777652
Q ss_pred -------------------cc-cCCCC---CchhHHHHHHHHHHHH
Q 008647 80 -------------------GL-GDDDQ---CIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 -------------------~~-~d~~~---~~~~~~~~W~~~l~~~ 102 (558)
+. .|... ..++.+++|.+++++.
T Consensus 117 ~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 117 STDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp ESTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHTTT
T ss_pred cCCCccccchhhhhcCcccCccCCCCCccccCHHHHHHHHHHHHHh
Confidence 22 22222 2478899999887654
|
| >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-11 Score=110.29 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=80.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cch-HHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QYE-HFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y~-~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+.+||+++|||.|.+|++++.|+++|.... +++++++|||+|++ .|. +||.+.+.+++.|.++|++.+...
T Consensus 46 ~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~-----l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~ 120 (169)
T 1obo_A 46 DYQYLIIGCPTLNIGELQSDWEGLYSELDDVD-----FNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYW 120 (169)
T ss_dssp GCSEEEEEEEEETTTEECHHHHHHHTTGGGCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCE
T ss_pred hCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcC-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEee
Confidence 47899999999999999999999999987643 88999999999998 596 799999999999999999887541
Q ss_pred -------------------cc-cCC--CC-CchhHHHHHHHHHHHHH
Q 008647 80 -------------------GL-GDD--DQ-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 -------------------~~-~d~--~~-~~~~~~~~W~~~l~~~l 103 (558)
+. .+. ++ ..+..++.|.+++++.|
T Consensus 121 ~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 121 STDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp ECTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccchhhcCCceeeEEeeCCCccccCHHHHHHHHHHHHHHh
Confidence 11 121 12 35788999999998876
|
| >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-11 Score=110.64 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=80.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-ch-HHHHHHHHHHHHHHhCCCeEeec-
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVP- 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y~-~f~~~~~~l~~~l~~lGa~~i~~- 78 (558)
.|+.+||+++||+.|++|++++.|+++|.... ++++++++||+||+. |. .||.+.+.++++|.++||+.+..
T Consensus 46 ~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~~-----l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~ 120 (169)
T 1czn_A 46 AYDYLIIGCPTWNVGELQSDWEGIYDDLDSVN-----FQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYW 120 (169)
T ss_dssp GCSEEEEECCEETTTEECHHHHHHGGGGGGSC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCE
T ss_pred hCCEEEEEecccCCCcCCHHHHHHHHHhhhhc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 47899999999999999999999999997543 889999999999995 95 79999999999999999988752
Q ss_pred --C----------------cc-cCCC--C-CchhHHHHHHHHHHHHH
Q 008647 79 --L----------------GL-GDDD--Q-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 79 --~----------------~~-~d~~--~-~~~~~~~~W~~~l~~~l 103 (558)
. +. .|.. + ..++.++.|.+++++.|
T Consensus 121 ~~~g~~~~~s~~~~~~~~~gl~~~~~~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 121 PIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp ECTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHHHHT
T ss_pred cCCCcceecchheeCCeeeeeeecCCCccccCHHHHHHHHHHHHHHh
Confidence 1 11 2322 2 45788999999988765
|
| >2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-11 Score=105.85 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=64.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCch-HHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYE-HFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~-~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||||.|++|+++..|++. +++++|+|||+||+.|. .||.+++.++++|.. ...+..
T Consensus 32 ~~~~ii~g~pt~~~g~~p~~~~~fl~~----------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~~~~~- 97 (119)
T 2xod_A 32 IDEDFILITYTTGFGNVPERVLEFLER----------NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PIVSKF- 97 (119)
T ss_dssp CCSCEEEEECCBTTTBCCHHHHHHHHH----------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEEEEE-
T ss_pred cCCCEEEEEeecCCCcCCHHHHHHHHH----------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---ccEEEE-
Confidence 478999999999999999999999865 35689999999999995 599999999999754 223222
Q ss_pred ccCCCCCchhHHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELVW 100 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l~ 100 (558)
.+....+....+++|.++++
T Consensus 98 ~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 98 ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ETTCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHHHHHHhc
Confidence 22222223456888987765
|
| >1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.4e-10 Score=99.73 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=64.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
++.+|+++||||.|++|+++.+|++.. .+..|||+|+||++| +.||.+++.+++++ |..-+ ...+
T Consensus 44 ~~~~ilv~pTyG~G~~P~~v~~Fl~~~----------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~-~~~e 109 (139)
T 1rlj_A 44 DTPFVLVTYTTNFGQVPASTQSFLEKY----------AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPIL-HKFE 109 (139)
T ss_dssp CSCEEEEECCBGGGBCCHHHHHHHHHH----------GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEE-EEEE
T ss_pred CCCEEEEEcCcCCCcCcHHHHHHHHhC----------CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCc-ceEE
Confidence 467899999999999999999998531 246899999999999 88999999998776 44332 2222
Q ss_pred cCCCCCchhHHHHHHHHHHHH
Q 008647 82 GDDDQCIEDDFTAWRELVWPE 102 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~ 102 (558)
.+-.......+.+|++++|.+
T Consensus 110 l~g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 110 LSGTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHHHHH
Confidence 221113456788999888753
|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.1e-09 Score=91.37 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=71.9
Q ss_pred CCcEEEEEeccCCCCCCCc-cHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTD-NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~-n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||||.|.+|+ +++.|+++|... ++++++++||.|+..| |.+.+.++++|+++|++.+.+..
T Consensus 45 ~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~ 115 (138)
T 5nul_A 45 NEDILILGCSAMTDEVLEESEFEPFIEEISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPL 115 (138)
T ss_dssp TCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCE
T ss_pred hCCEEEEEcCccCCCCCChHHHHHHHHHHHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCce
Confidence 5889999999999999997 999999999763 6899999999988765 78899999999999999997766
Q ss_pred ccCCCC--CchhHHHHHHHHH
Q 008647 81 LGDDDQ--CIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~--~~~~~~~~W~~~l 99 (558)
.++... +. ...++|.+++
T Consensus 116 ~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 116 IVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp EEESSCGGGH-HHHHHHHHHH
T ss_pred EEecCCCHHH-HHHHHHHHHH
Confidence 666554 22 5555555443
|
| >3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.8e-08 Score=86.33 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=62.5
Q ss_pred CcEEEEEeccCC----CCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEee
Q 008647 3 HSIYLRLTCRYG----DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 3 ~~~~i~~~sT~G----~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.+.+|++++||| .|+.|+.+.+|++.+.. .+.-++|+|.||++| +.||.+++.+.+++.. ..+
T Consensus 59 ~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~v---P~l- 126 (153)
T 3n3a_C 59 DEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCGV---PWL- 126 (153)
T ss_dssp CSCEEEEEECCTTSSSSSSSCHHHHHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEE-
T ss_pred CCCEEEEEeccCCCCcCCcCcHHHHHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhCC---CeE-
Confidence 457899999999 59999999999876543 245799999999999 9999999999999862 222
Q ss_pred cCcccCCCC--CchhHHHHHHHHHHH
Q 008647 78 PLGLGDDDQ--CIEDDFTAWRELVWP 101 (558)
Q Consensus 78 ~~~~~d~~~--~~~~~~~~W~~~l~~ 101 (558)
.+.+-.. ...+.+.+|++++|+
T Consensus 127 --~kfEL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 127 --YRFELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp --EEEETTCCHHHHHHHHHHHHHHHH
T ss_pred --EEEeCCCCHHHHHHHHHHHHHHHh
Confidence 2223222 234556666666665
|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=7e-07 Score=78.62 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=69.1
Q ss_pred CCcEEEEEeccCCCCCCCc-cHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTD-NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~-n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||+++||+.|.+|. +++.|++++.. .++++++++||.+... ||.+.+.++++|..+|++.+ +..
T Consensus 46 ~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~------~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~-~~~ 115 (137)
T 2fz5_A 46 SKDVILLGCPAMGSEELEDSVVEPFFTDLAP------KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI-GTA 115 (137)
T ss_dssp TCSEEEEECCCBTTTBCCHHHHHHHHHHHGG------GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCEEEEEccccCCCCCCHHHHHHHHHHhhh------hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc-CcE
Confidence 5789999999999999998 59999999964 2789999999975433 78899999999999999888 444
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
.++...+..+.+..|.+++
T Consensus 116 ~~~g~~~~~~~~~~~~~~l 134 (137)
T 2fz5_A 116 IVNEMPDNAPECKELGEAA 134 (137)
T ss_dssp EEESSSSSCTHHHHHHHHH
T ss_pred EEeeCCChHHHHHHHHHHH
Confidence 4433332266677777655
|
| >3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.8e-07 Score=80.85 Aligned_cols=92 Identities=11% Similarity=-0.123 Sum_probs=71.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.+||+++||| |.+|. +.|++.|.... +.++++++||.++. +|.+.+.++++|+++|++.+.+...
T Consensus 51 ~~d~ii~Gspty~-g~~p~--~~fl~~l~~~~-----l~gk~v~~fgs~g~----~g~a~~~l~~~l~~~G~~~v~~~~~ 118 (161)
T 3hly_A 51 SARGIVLGTPPSQ-PSEAV--ATALSTIFAAA-----HNKQAIGLFDSYGG----DDEPIDALLAQFRNLGLHTAFPPIR 118 (161)
T ss_dssp HCSEEEEECCBSS-CCHHH--HHHHHHHHHHC-----CTTSEEEEECCCCS----SBCCHHHHHHHHHHTTCEESSSCBC
T ss_pred hCCEEEEEcCCcC-CchhH--HHHHHHHHhhh-----hCCCEEEEEEcCCC----CcHHHHHHHHHHHHCCCEEecCceE
Confidence 4789999999997 88875 88999887643 78999999997654 3788999999999999999877665
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
+.... +.......|.+.+...|.+
T Consensus 119 ~~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 119 VKDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 54443 2345566777777666653
|
| >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-07 Score=82.43 Aligned_cols=92 Identities=7% Similarity=-0.148 Sum_probs=72.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||.++||+ |++| +..|++.|.... +.++.+++||.++ .+|.+.+.+.++|+++|++.+.+...
T Consensus 56 ~~d~ii~Gspty~-g~~p--~~~~l~~l~~~~-----~~~k~va~fgs~g----~~~~a~~~l~~~l~~~G~~~v~~~~~ 123 (159)
T 3fni_A 56 RCTGLVIGMSPAA-SAAS--IQGALSTILGSV-----NEKQAVGIFETGG----GDDEPIDPLLSKFRNLGLTTAFPAIR 123 (159)
T ss_dssp TEEEEEEECCBTT-SHHH--HHHHHHHHHHHC-----CTTSEEEEECCSS----SCBCCHHHHHHHHHHTTCEESSSCBC
T ss_pred hCCEEEEEcCcCC-CCcc--HHHHHHHHHhhc-----ccCCEEEEEEcCC----CCcHHHHHHHHHHHHCCCEEecCceE
Confidence 4789999999997 8877 488999887654 6899999999764 34678899999999999999887766
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
+.... +.....+.|.+.+.+.+.+
T Consensus 124 ~~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 124 IKQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66554 2345666787777766655
|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
Probab=97.72 E-value=4.8e-05 Score=79.39 Aligned_cols=94 Identities=13% Similarity=-0.059 Sum_probs=72.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||+++|||.|.+| .++.|+++|.... +.++.+++||.+ ..||.+.+.+.+.|.++|++.+.+...
T Consensus 303 ~~d~ii~gsp~~~~~~~~-~~~~~l~~l~~~~-----l~~k~~~~f~t~----g~~~~a~~~l~~~l~~~G~~~~~~~~~ 372 (402)
T 1e5d_A 303 DAGAVIVGSPTHNNGILP-YVAGTLQYIKGLR-----PQNKIGGAFGSF----GWSGESTKVLAEWLTGMGFDMPATPVK 372 (402)
T ss_dssp TCSEEEEECCCBTTBCCH-HHHHHHHHHHHTC-----CCSCEEEEEEEE----SSSCHHHHHHHHHHHHTTCBCCSCCEE
T ss_pred HCCEEEEECCccCCCchH-HHHHHHHHhhhcc-----cCCCEEEEEEcC----CCccHHHHHHHHHHHHCCCEEecCceE
Confidence 578999999999877766 6999999997654 789999999974 346889999999999999988864444
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
++... +....+..|.+++...+.+
T Consensus 373 ~~~~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 373 VKNVPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 44332 2345677888777766654
|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.9e-05 Score=79.94 Aligned_cols=91 Identities=7% Similarity=-0.215 Sum_probs=68.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecC-c
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL-G 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~-~ 80 (558)
.++.+||+++||+.|.+| .++.|+++|.... ++++.+++||.+ ..||.+.+.++++|.++|++.+.+. .
T Consensus 302 ~~d~ii~g~p~y~~~~~~-~~~~~l~~l~~~~-----~~~k~~~~~~s~----g~~~~a~~~l~~~l~~~g~~~~~~~~~ 371 (398)
T 1ycg_A 302 DARAVLVGSPTINNDILP-VVSPLLDDLVGLR-----PKNKVGLAFGAY----GWGGGAQKILEERLKAAKIELIAEPGP 371 (398)
T ss_dssp HCSEEEEECCCBTTBCCG-GGHHHHHHHHHHC-----CSSCEEEEEEEE----SSSCCHHHHHHHHHHHTTCEESCSSCC
T ss_pred HCCEEEEECCccCccchH-HHHHHHHHHhccc-----cCCCEEEEEEeC----CCchHHHHHHHHHHHHCCeEEecCceE
Confidence 468999999999877777 5999999997643 789999999974 4479999999999999999888754 4
Q ss_pred ccCCCC--CchhHHHHHHHHHHHH
Q 008647 81 LGDDDQ--CIEDDFTAWRELVWPE 102 (558)
Q Consensus 81 ~~d~~~--~~~~~~~~W~~~l~~~ 102 (558)
.++... .....++.|.+++...
T Consensus 372 ~~~~~p~~~~~~~~~~~~~~l~~~ 395 (398)
T 1ycg_A 372 TVQWVPRGEDLQRCYELGRKIAAR 395 (398)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHHHH
Confidence 343332 2334555666555443
|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00033 Score=73.01 Aligned_cols=94 Identities=12% Similarity=-0.117 Sum_probs=68.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||+++||+ |.+|..++.|++++...... . |+++++++||.|+.. +.+.+.+.+.|..+|++.+.+ ..
T Consensus 307 ~~d~iiigsP~y~-~~~~~~~k~~ld~l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~-~~ 378 (404)
T 2ohh_A 307 ESGAIALGAPTIY-DEPYPSVGDLLMYLRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACE-EE 378 (404)
T ss_dssp TCSEEEEECCEET-TEECTHHHHHHHHHHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEE-EE
T ss_pred HCCEEEEECcccc-ccchHHHHHHHHHhhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeE-EE
Confidence 5789999999996 55666799999999764322 2 689999999998875 567789999999999988876 33
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
..... +.....+.|.+++.+.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
T 2ohh_A 379 VYYVPTGDELDACFEAGRKLAAEI 402 (404)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHH
Confidence 33222 23455667776665443
|
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0016 Score=60.65 Aligned_cols=75 Identities=11% Similarity=-0.186 Sum_probs=61.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||+++||. |.+|..++.|++++.... ....|.++++++|+.+...+..++.+...+...|..+|++.+.+
T Consensus 71 ~aD~ii~gsP~y~-~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 71 NCAGLALGSPTRF-GNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp TCSEEEEEEECBT-TBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred HCCEEEEEcChhc-cCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 5789999999995 889999999999886420 00127899999999998877556888899999999999987644
|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=68.11 Aligned_cols=94 Identities=7% Similarity=-0.201 Sum_probs=68.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCC-CCceEEEEeecCcCchHHHHHHHHHHHHHHh-CCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWL-QQLKFGVFGLGNRQYEHFNKIGIVLDEELCK-QGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l-~~~~~avfGlGds~y~~f~~~~~~l~~~l~~-lGa~~i~~~ 79 (558)
.++.+||+++||+. .+|..++.|++++.... + +++++++||.|+.. +.+.+.+...|.. +|++.+.+.
T Consensus 307 ~~D~iiigsP~y~~-~~~~~~k~fld~l~~~~-----~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~ 376 (414)
T 2q9u_A 307 DSGAVAFASPTLNN-TMMPSVAAALNYVRGLT-----LIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEK 376 (414)
T ss_dssp TCSEEEEECCCBTT-BCCHHHHHHHHHHHHHT-----TTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSS
T ss_pred hCCEEEEEcCccCc-CchHHHHHHHHHHHhhc-----ccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCc
Confidence 57899999999964 55556999999997643 5 78999999998764 4577899999999 999877643
Q ss_pred -cccCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 80 -GLGDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 80 -~~~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
..+.... +.......|.+++...+.+
T Consensus 377 ~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 405 (414)
T 2q9u_A 377 GITFKFNYTEELLEQAYNAGVDLGKRAIA 405 (414)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2345566777766665554
|
| >3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0048 Score=55.79 Aligned_cols=82 Identities=12% Similarity=-0.012 Sum_probs=57.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.|+.|||.++|| .|.+|..+..|.+.+ . ++++++++|+. |.+.+. .+.+.+.+.|. ||+ +.+-.
T Consensus 78 ~yd~iilG~P~~-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~~~g---~~~~~l~~~l~--~~~-~~~g~ 142 (162)
T 3klb_A 78 KYEVLFVGFPVW-WYIAPTIINTFLESY---D-----FAGKIVVPFATSGGSGIG---NCEKNLHKAYP--DIV-WKDGK 142 (162)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHTS---C-----CTTCEEEEEEECSSCCSH---HHHHHHHHHCT--TSE-ECCCE
T ss_pred hCCEEEEEcccc-cCCCCHHHHHHHHhc---C-----CCCCEEEEEEEeCCCCcc---HHHHHHHHHcC--CCE-eecce
Confidence 488999999999 589998888886653 2 78999999987 666663 34566666664 554 33433
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
.+.. ...+.+++.|++++
T Consensus 143 ~~~g-~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 143 LLNG-QITRDLVTEWFEKI 160 (162)
T ss_dssp ECCS-CCCHHHHHHHHHHT
T ss_pred EEeC-CCCHHHHHHHHHHh
Confidence 3322 24578999998764
|
| >2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0099 Score=54.95 Aligned_cols=102 Identities=8% Similarity=-0.142 Sum_probs=68.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeec--
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVP-- 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~-- 78 (558)
.++.+||+++|| .|.+|..++.|++++..... ..+.++++++||. |+.. ..+..+.+.+...|..+|...+..
T Consensus 52 ~aD~ii~gsP~y-~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~ 127 (188)
T 2ark_A 52 WADGLAVGSPTN-MGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTD 127 (188)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEE
T ss_pred hCCEEEEEeCcc-CCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCc
Confidence 478999999999 89999999999999876211 2288999999999 5543 224666777888888888855421
Q ss_pred ----Cc--------ccCCC-CCchhHHHHHHHHHHHHHHHhh
Q 008647 79 ----LG--------LGDDD-QCIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 79 ----~~--------~~d~~-~~~~~~~~~W~~~l~~~l~~~~ 107 (558)
.. .+.-. .+.......|.+++...+.+..
T Consensus 128 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 128 YVGKKFTLHYGAVVAGEPRSEEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp EEETTEEESSSEEEESSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccCCCcceeecCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111 1123455677777777766653
|
| >3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0046 Score=57.56 Aligned_cols=73 Identities=16% Similarity=-0.002 Sum_probs=59.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.+||.++||. |.+|..++.|++++...- ....+.++++++|+.+.+.+..+..+...+...|..+|..-+
T Consensus 54 ~~D~ii~gsP~y~-g~~~~~~k~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 54 AADAIIFGTPTYM-GGPSWQFKKFADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HCSEEEEEEEEET-TEECHHHHHHHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HCCEEEEEeCccC-CCccHHHHHHHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 4789999999995 999999999999986310 012278999999999988886678889999999999998654
|
| >4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0079 Score=54.95 Aligned_cols=82 Identities=11% Similarity=0.016 Sum_probs=58.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.|||+++||+ |.+|..+..|.+.+ . ++++++++|+.+-... +..+.+.+.+.|. ||+ +.+-..
T Consensus 87 ~yD~iilg~Pvy~-g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~-~~~g~~ 152 (171)
T 4ici_A 87 TYDVVFIGYPIWW-DLAPRIINTFIEGH---S-----LKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLN-WKEGRL 152 (171)
T ss_dssp GCSEEEEEEECBT-TBCCHHHHHHHHHS---C-----CTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSE-ECCCEE
T ss_pred HCCEEEEeccccc-CCchHHHHHHHHHc---C-----CCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCe-eccCeE
Confidence 5789999999996 88898888887765 2 7899999999964322 2456666777765 554 444444
Q ss_pred cCCCCCchhHHHHHHHHH
Q 008647 82 GDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l 99 (558)
.+. ..+.++..|++++
T Consensus 153 ~~~--~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 153 LNR--TDEKAIRAWLDVI 168 (171)
T ss_dssp CSS--CCHHHHHHHHHHH
T ss_pred ecC--CCHHHHHHHHHHh
Confidence 433 2578899998764
|
| >3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0087 Score=55.49 Aligned_cols=73 Identities=11% Similarity=-0.144 Sum_probs=57.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||.++|| .|.+|..++.|++++..... ...+.++++++|+.+... .....+.+.+...|..+|+..+-
T Consensus 68 ~aD~ii~gsP~y-~~~~~~~lk~~ld~~~~~~~-~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 68 DYDAIIFGTPTR-FGNMSGQMRTFLDQTGGLWA-SGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GCSEEEEEEEEE-TTEECHHHHHHHTTCHHHHH-HTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HCCEEEEEeChh-cCCchHHHHHHHHHhhhhhh-hcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 478999999999 79999999999998854210 012789999999998775 44556778888899999987664
|
| >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0047 Score=57.69 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=54.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||++++| .|..|..++.|.+++... .+.++++++|+.|.... .++.....+...|..+|++.+-
T Consensus 69 ~aD~ii~~sP~y-~~~~p~~lK~~ld~l~~~-----~~~gK~~~~~~tgg~~~-~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 69 NADGLIVATPIY-KASYTGLLKAFLDILPQF-----ALAGKAALPLATGGSPA-HVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHTTSCTT-----TTTTCEEEEEEEESSGG-GGGHHHHTHHHHHHTTTCSEEC
T ss_pred HCCEEEEEeCcc-CCCCCHHHHHHHHhcccc-----ccCCCEEEEEEECCCcc-hhhHHHHHHHHHHHHcCCEecc
Confidence 368999999999 588999999999998542 38899999999987643 3333324688999999998764
|
| >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.011 Score=54.86 Aligned_cols=75 Identities=7% Similarity=-0.138 Sum_probs=57.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||.+++|. |.+|..++.|++++...- ....+.++++++|+.+...+.....+.+.+...|..+|+..+-.
T Consensus 70 ~aD~ii~gsP~y~-~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 70 WADGFAIGSPTRY-GNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp HCSEEEEEEECBT-TBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred hCCEEEEECCccc-cCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 3689999999995 899999999999885320 01238899999999877765333667788999999999876643
|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.015 Score=60.85 Aligned_cols=84 Identities=11% Similarity=-0.116 Sum_probs=61.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||.++||+ |++++.+..|+..|.... +.++..|+||.+- |- +.+.+.+.++|+++|.+-+-+ ..
T Consensus 319 ~~~~ivlGspT~~-~~~~p~~~~~l~~l~~~~-----~~~K~~~~FGSyG--Ws--g~a~~~~~~~l~~~~~~~v~~-~~ 387 (410)
T 4dik_A 319 DSEALIFGVSTYE-AEIHPLMRFTLLEIIDKA-----NYEKPVLVFGVHG--WA--PSAERTAGELLKETKFRILSF-TE 387 (410)
T ss_dssp TCSEEEEEECCTT-SSSCHHHHHHHHHHHHHC-----CCCCEEEEEEECC--CC--CTTSCCHHHHHTTSSCEEEEE-EE
T ss_pred hCCeEEEEeCCcC-CcCCHHHHHHHHHHHhcc-----cCCCEEEEEECCC--CC--cHHHHHHHHHHHHCCCEEECc-EE
Confidence 5788999999996 677778999999988765 6789999999632 21 467899999999999876544 33
Q ss_pred cCCCCCchhHHHHHH
Q 008647 82 GDDDQCIEDDFTAWR 96 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~ 96 (558)
.-.....++.+++-.
T Consensus 388 ~~~~~~de~~lee~~ 402 (410)
T 4dik_A 388 IKGSNMDERKIEEAI 402 (410)
T ss_dssp ECSTTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 332333455555543
|
| >3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.017 Score=52.56 Aligned_cols=67 Identities=4% Similarity=-0.004 Sum_probs=54.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.+||++++| .|.+|..++.|.+|+.... +.++.+++||. |... .+..+...+...|..+|+..+
T Consensus 63 ~aD~ii~~tP~y-~~~~p~~lk~~lD~l~~~~-----~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 63 KADAIVLLSPEY-HSGMSGALKNALDFLSSEQ-----FKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HCSSEEEEEECS-SSSCCHHHHHHHHTCCHHH-----HTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEE
T ss_pred HCCEEEEEcCCc-CCCCCHHHHHHHHHhCHhh-----hCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEe
Confidence 367899999999 8999999999999986532 78899999984 4331 235677889999999999765
|
| >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.028 Score=52.02 Aligned_cols=102 Identities=8% Similarity=-0.076 Sum_probs=70.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCch--HHHHHHHHHHHHHHhC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYE--HFNKIGIVLDEELCKQ 71 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y~--~f~~~~~~l~~~l~~l 71 (558)
.++.+||++++| .|.+|.-.+.|.+++..... +...+.++++++|+.+...|. .|+.+...+...|..+
T Consensus 86 ~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l~~~ 164 (201)
T 1t5b_A 86 AHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFI 164 (201)
T ss_dssp HCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHHHHT
T ss_pred hCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHHhhc
Confidence 368999999999 67899999999999974211 012478999999998777663 3666777788999999
Q ss_pred CCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 72 GGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 72 Ga~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
|++.+-......... .+...++|+++..+.+.+
T Consensus 165 G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 197 (201)
T 1t5b_A 165 GITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDS 197 (201)
T ss_dssp TCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEecccC-ChHHHHHHHHHHHHHHHH
Confidence 998663322221111 234457787766555543
|
| >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.028 Score=52.67 Aligned_cols=75 Identities=11% Similarity=-0.065 Sum_probs=58.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||.+++| .|.+|..++.|++++...- ....+.++++++|+.+...+..+..+...+...|..+|...+..
T Consensus 78 ~aD~ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 78 WAEAIVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp HCSEEEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred HCCEEEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 468999999999 5899999999999875320 01238899999999988766444677888999999999876643
|
| >3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.055 Score=48.00 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=53.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.|||.++||. |.+|..++.|++.+.. +.+..+++|+.|.+... .+.+.+.+.+. ||+ +.+-..
T Consensus 76 ~~d~iilG~P~~~-g~~~~~~~~fl~~~~~-------~~~k~~~~~t~gg~~~g---~~~~~l~~~~~--~~~-~~~g~~ 141 (151)
T 3edo_A 76 NYDLILIGSPVWS-GYPATPIKTLLDQMKN-------YRGEVASFFTSAGTNHK---AYVSHFNEWAD--GLN-VIGVAR 141 (151)
T ss_dssp GCSEEEEEEEEET-TEECTHHHHHHHHTTT-------CCSEEEEEEECSSCCHH---HHHHHHHHHTT--TSE-EEEEEE
T ss_pred hCCEEEEEcceec-ccccHHHHHHHHhchh-------cCCEEEEEEEeCCCCCC---cHHHHHHHHcC--CCe-eecccc
Confidence 5889999999995 9999999999988741 67889999999998762 23455666664 443 323222
Q ss_pred cCCCCCchhHHHHHH
Q 008647 82 GDDDQCIEDDFTAWR 96 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~ 96 (558)
.+ .++..|+
T Consensus 142 ~~------~~~~~w~ 150 (151)
T 3edo_A 142 DD------SEVDKWS 150 (151)
T ss_dssp TT------TTHHHHH
T ss_pred cH------HHHHHHh
Confidence 22 3588886
|
| >1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.12 Score=47.44 Aligned_cols=66 Identities=14% Similarity=-0.056 Sum_probs=54.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||++++| .|.+|..++.|.+++.. .+.++++++|+.|...- ..+...+...|..+|++.+-
T Consensus 84 ~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~~---~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 84 ALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEEE
T ss_pred hCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcch---hhHHHHHHHHHHHCCCEEcc
Confidence 478999999999 58899999999998853 27899999999988542 34667889999999998664
|
| >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.12 Score=47.58 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=56.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||++++| .|.+|..++.|.+++..... ..+.++++++|+.+...+. ...+...+...|..+|++.+-
T Consensus 72 ~aD~ii~~sP~y-~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 72 AADALLFATPEY-NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp HCSEEEEECCEE-TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred hCCEEEEEcccc-ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 368899999999 67799999999999976421 2488999999999754442 235668888999999997665
|
| >3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.18 Score=46.73 Aligned_cols=67 Identities=10% Similarity=0.004 Sum_probs=52.3
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|.+|.-++.|.+|+... .+.++..++++.|... ......-..+...|..+|+..+
T Consensus 86 AD~ivi~sP~Y-~~~~~~~lK~~iD~~~~~-----~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv 152 (191)
T 3k1y_A 86 SDGLVVATPVF-KASYTGLFKMFFDILDTD-----ALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVV 152 (191)
T ss_dssp CSEEEEEEECB-TTBSCHHHHHHHHHSCTT-----TTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEEC
T ss_pred CCEEEEEcCcc-CCcCcHHHHHHHHHhhhh-----hcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEc
Confidence 57899999999 899999999999999652 3899999999988543 2222222338888999999765
|
| >1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.2 Score=47.99 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=68.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.|||.+++| .|.+|..++.|.+++.... ....+.+++.++|+.+...- ...+...+...|..+|+..+-....
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~g--~~~~~~~l~~~l~~~G~~~v~~~~~ 154 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESNG--SDNVSEYLRDIFSYMGGQILHQVSI 154 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSCC--SCCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCCc--hhhHHHHHHHHHHHCCCeeeeEEEE
Confidence 367899999999 7889999999999985421 12348899999987653321 2245667888999999987654433
Q ss_pred cCC-CCCchhHHHHHHHHHHHHHHH
Q 008647 82 GDD-DQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~-~~~~~~~~~~W~~~l~~~l~~ 105 (558)
.+. .......++.+.+++...+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 155 TNSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp EGGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred eccCChHHHHHHHHHHHHHHHHHhc
Confidence 222 113456666777766666543
|
| >4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.61 Score=43.30 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=55.7
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|..|.-.+.|.+|+.... ...|.++.+++++.+-..+-.. .+...|...|..+|+..+
T Consensus 74 AD~iVi~tP~Y-~~s~p~~LK~~iD~~~~~~--~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v 143 (199)
T 4hs4_A 74 ADAVVIVTPEY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVL 143 (199)
T ss_dssp SSEEEEEECCB-TTBCCHHHHHHHHHHTTSS--SCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEEC
T ss_pred CCEEEEEcCcc-CCCcCHHHHHHHHHhcccC--CcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEc
Confidence 67899999999 7889999999999997721 2458999999999965545222 245678899999999766
|
| >2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.91 Score=42.02 Aligned_cols=101 Identities=9% Similarity=-0.059 Sum_probs=64.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 73 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa 73 (558)
.++.+||++++| .|.+|.-++.|.+++..... +...|.+++++++......|..=..+...+...|.-+|.
T Consensus 94 ~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~~~G~ 172 (208)
T 2hpv_A 94 SADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFIGV 172 (208)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHHHTTC
T ss_pred hCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHHhCCC
Confidence 367899999999 78899999999999865211 113478999999865444452102344567778888999
Q ss_pred eEeecCcccCCCCCchhHHHHHHHHHHHHHH
Q 008647 74 ARLVPLGLGDDDQCIEDDFTAWRELVWPELD 104 (558)
Q Consensus 74 ~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~ 104 (558)
+.+-......... .+...++|+++..+...
T Consensus 173 ~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~ 202 (208)
T 2hpv_A 173 DQVDGLFIEGIDH-FPDRAEELLNTAMTKAT 202 (208)
T ss_dssp CEEEEEEEECTTT-CGGGHHHHHHHHHHHHH
T ss_pred CeeeEEEEccccC-CHHHHHHHHHHHHHHHH
Confidence 8664433222222 23556677765544443
|
| >3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=0.56 Score=43.33 Aligned_cols=104 Identities=10% Similarity=-0.087 Sum_probs=72.2
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcC--chHH--HHHHHHHHHHHHh
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ--YEHF--NKIGIVLDEELCK 70 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~--y~~f--~~~~~~l~~~l~~ 70 (558)
.+.+||+++.| .+.+|.-.+.|.+++..... +...|.|+++.|+..+... |..+ ......+...|.-
T Consensus 74 AD~iV~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~ 152 (196)
T 3lcm_A 74 ADHLIFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKP 152 (196)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGG
T ss_pred CCEEEEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHh
Confidence 68999999999 78999999999999954211 1135899999998877665 5211 1112456667777
Q ss_pred CCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhh
Q 008647 71 QGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 71 lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~ 107 (558)
+|.+.+-...........++...+|++++.+...+.+
T Consensus 153 ~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 153 CAISPVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp GTCCCEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred cCCceeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8998765544444433467788899988777666544
|
| >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=90.66 E-value=1.3 Score=40.59 Aligned_cols=73 Identities=11% Similarity=-0.024 Sum_probs=55.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC-----CCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND-----RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~-----~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.+||++++| .|..|.-.+.|.+++..... ....|.++++++++.+... .+..+...+...|..+|++.+
T Consensus 67 ~AD~iV~~sP~y-~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v 143 (192)
T 3fvw_A 67 EADAIWIFSPVY-NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLV 143 (192)
T ss_dssp HCSEEEEECCCB-TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEEC
T ss_pred hCCEEEEECccc-ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeee
Confidence 367899999999 78899999999999976321 0135899999999887663 233445778889999999866
Q ss_pred e
Q 008647 77 V 77 (558)
Q Consensus 77 ~ 77 (558)
-
T Consensus 144 ~ 144 (192)
T 3fvw_A 144 D 144 (192)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 | Back alignment and structure |
|---|
Probab=90.17 E-value=0.89 Score=40.99 Aligned_cols=75 Identities=9% Similarity=-0.088 Sum_probs=55.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCC------CCCCCceEEEEeecCcCch-HHHHHHHHHHHHHHhCCCe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRG------PWLQQLKFGVFGLGNRQYE-HFNKIGIVLDEELCKQGGA 74 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~------~~l~~~~~avfGlGds~y~-~f~~~~~~l~~~l~~lGa~ 74 (558)
.++.|||++++| .|.+|.-++.|.+++....... ..+.+++.++|+.+..... .+..+...+...|..+|.+
T Consensus 71 ~aD~ii~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~ 149 (184)
T 1rli_A 71 QCHILIFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMS 149 (184)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCE
T ss_pred hCCEEEEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCc
Confidence 578999999999 7889999999999885421110 1267899999988665321 2344667888899999998
Q ss_pred Eee
Q 008647 75 RLV 77 (558)
Q Consensus 75 ~i~ 77 (558)
.+-
T Consensus 150 ~~~ 152 (184)
T 1rli_A 150 FKG 152 (184)
T ss_dssp EEE
T ss_pred cce
Confidence 663
|
| >2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.89 E-value=1.5 Score=42.12 Aligned_cols=71 Identities=8% Similarity=-0.075 Sum_probs=54.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|.+|.-.+.|.+|+.........+.++..++++.+-..-. . .+...+...|..+|+..+
T Consensus 99 AD~iI~~sP~Y-n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg-~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 99 SEGQVWVSPER-HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQS-F-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp CSEEEEEEECS-SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCC-C-HHHHHHHHHHHHTTCEEC
T ss_pred CCEEEEEeCCC-CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCccH-H-HHHHHHHHHHHHCCCEEe
Confidence 57899999999 79999999999999965322123489999999998533221 1 355788889999999765
|
| >3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.50 E-value=1.5 Score=40.41 Aligned_cols=70 Identities=9% Similarity=-0.054 Sum_probs=53.8
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|..|.-.+.|.+|+.... ...+.++..++++..-..+-.. .+...|...|..+|+.-+
T Consensus 73 AD~iv~~sP~y-~~~~~~~lK~~iD~~~~~~--~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 73 ADGVVIVTPEY-NYSVPGGLKNAIDWLSRLP--DQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp SSEEEEEECCB-TTBCCHHHHHHHHHHHTST--TCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEEC
T ss_pred CCEEEEEeccc-CCCCCHHHHHHHHHHhhcC--ccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEc
Confidence 57899999999 8999999999999998732 2358999999999632222111 345778889999999755
|
| >3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=89.19 E-value=4.9 Score=36.83 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+||+++.| +|..|.-.+.|.+||.+.. ....+.++.++++|.+-..+-.. .+...|...|..+|+..+
T Consensus 67 ~aD~~ii~tPeY-n~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 67 HSDAVLAITPEY-NRSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp TSSEEEEECCCB-TTBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred hCCcEEEechhh-cccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 467899999999 7999999999999996532 12459999999998755544222 234567788899999655
|
| >3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} | Back alignment and structure |
|---|
Probab=88.08 E-value=2.7 Score=38.16 Aligned_cols=103 Identities=7% Similarity=-0.118 Sum_probs=70.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCC---CCCCCCCCceEEEEeecCcC---ch-------HHHHHHHHHHHHH
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGN---DRGPWLQQLKFGVFGLGNRQ---YE-------HFNKIGIVLDEEL 68 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~---~~~~~l~~~~~avfGlGds~---y~-------~f~~~~~~l~~~l 68 (558)
..+.+||.++.| .+.+|.-.+.|.+.+.... .....|.|+++.++...... |. .+...-+-+...+
T Consensus 51 ~aD~iV~~~P~y-~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~ 129 (177)
T 3ha2_A 51 QNDRIILEFPLY-WYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFA 129 (177)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHH
T ss_pred hCCEEEEECChh-hccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHH
Confidence 468999999999 7889999999999875420 01235899999988665543 31 2334444556677
Q ss_pred HhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 69 ~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
.-+|.+-+-+..........+.+.++|+++..+.|..
T Consensus 130 ~~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~l~~ 166 (177)
T 3ha2_A 130 NKTKMMYLPILAVHQFLYLEPDAQQRLLVAYQQYATN 166 (177)
T ss_dssp HHTTCEECCCEEEESGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCCeEeCeEEEeCCCCCCHHHHHHHHHHHHHHHcc
Confidence 7889977644443332334577889999887776664
|
| >2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4 | Back alignment and structure |
|---|
Probab=87.53 E-value=2.1 Score=42.00 Aligned_cols=71 Identities=8% Similarity=-0.165 Sum_probs=54.0
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|..|.-++.|.+|+.........+.++..++++.+-..- .+ .+...+...|..+|+..+
T Consensus 124 ADgiV~aSP~Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~g-g~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 124 SEGQVWCSPER-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQ-SF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp CSEEEEEEEEE-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSC-CC-HHHHHHHHHHHHTTCEEC
T ss_pred CCeEEEEcCcc-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCcc-HH-HHHHHHHHHHHhcCcEEe
Confidence 57899999999 8999999999999996532222348999999999853322 22 345678888999998765
|
| >3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A* | Back alignment and structure |
|---|
Probab=87.48 E-value=1.8 Score=40.19 Aligned_cols=101 Identities=11% Similarity=0.008 Sum_probs=66.5
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCC---------CC---CCCCCCceEEEEee-cC-cCch-----HHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN---------DR---GPWLQQLKFGVFGL-GN-RQYE-----HFNKIGIV 63 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~---------~~---~~~l~~~~~avfGl-Gd-s~y~-----~f~~~~~~ 63 (558)
.+.+||+++.| .+.+|.-.+.|.+++.... .+ ...|.++++.++.. |. ..|. .+...-..
T Consensus 88 AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~~~ 166 (212)
T 3r6w_A 88 SDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPW 166 (212)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGCCSHHH
T ss_pred CCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchhhhHHH
Confidence 67899999999 7889999999999995421 11 23588998888866 42 2332 23344566
Q ss_pred HHHHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 64 LDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 64 l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
+...|.-+|.+.+-.. ........++..+.|+++..+.+.+
T Consensus 167 l~~~l~~~G~~~~~~v-~~~g~~~~~~~~~~~l~~a~~~~~~ 207 (212)
T 3r6w_A 167 LRTALGFIGIDEVTVV-AAEGEESGGRSFEDSCDEAEQRLLA 207 (212)
T ss_dssp HHHHHHHHTCCEEEEE-EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCceeEEE-EEecccCCHHHHHHHHHHHHHHHHH
Confidence 7788888999877333 3332223456677777665555443
|
| >3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii} | Back alignment and structure |
|---|
Probab=86.48 E-value=0.13 Score=47.86 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=55.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
..+.+||++++| .|..|.-.+.|.+|+..... ..+.++.+++++.+...+. ...+...+...|..+|+..+-
T Consensus 73 ~AD~iIi~tP~Y-~~s~p~~lK~~iD~l~~~~~--~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 73 TADAVVIVTPEY-NYSVPGVLKNAIDWLSRVSP--QPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 467899999999 67899999999999976421 1488999999997544332 344667888888889987663
|
| >3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.15 E-value=5 Score=37.71 Aligned_cols=103 Identities=10% Similarity=-0.055 Sum_probs=69.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcC--C-----------------CCCCCCCCceEEEEeecCcCchHH-----
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEG--N-----------------DRGPWLQQLKFGVFGLGNRQYEHF----- 57 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~--~-----------------~~~~~l~~~~~avfGlGds~y~~f----- 57 (558)
..+.|||.++.| .+..|.-.+.|++.+... . .+...|.|+++.|+-.-......|
T Consensus 83 ~aD~iv~~~P~y-~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~ 161 (218)
T 3rpe_A 83 WADTIIYQMPAW-WMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQ 161 (218)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTS
T ss_pred hCCEEEEECChH-hccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhccccc
Confidence 367899999999 889999999999988542 1 112357899988876655543222
Q ss_pred --HH-----HHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhh
Q 008647 58 --NK-----IGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 58 --~~-----~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~ 107 (558)
+. .-.-+...|.-+|.+.+-+....+... +.++++|++++.+.|.+.+
T Consensus 162 ~~~g~~~~~~l~p~~~~l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 162 FFHGVGVDGVYLPFHKANQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp TTTTCHHHHHTHHHHHHHHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 22 222246777789998775544444332 4578888888877777655
|
| >2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A* | Back alignment and structure |
|---|
Probab=84.30 E-value=4.6 Score=37.31 Aligned_cols=75 Identities=11% Similarity=-0.008 Sum_probs=52.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCC-------------------CCCCCCCCceEEEEeecCcCchHH------
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN-------------------DRGPWLQQLKFGVFGLGNRQYEHF------ 57 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~-------------------~~~~~l~~~~~avfGlGds~y~~f------ 57 (558)
.+.|||.++.| .+.+|.-.+.|.+.+.... .+...|.+++++++.........|
T Consensus 71 AD~iV~~~P~y-~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~ 149 (204)
T 2amj_A 71 ADVVIWQMPGW-WMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQF 149 (204)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSS
T ss_pred CCEEEEECCcc-ccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCccc
Confidence 68999999999 7889999999999763210 112358899999988765533222
Q ss_pred ------HHHHHHHHHHHHhCCCeEeec
Q 008647 58 ------NKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 58 ------~~~~~~l~~~l~~lGa~~i~~ 78 (558)
..+...+...|.-+|++.+-.
T Consensus 150 ~~~~~~~~~l~~l~~~l~~~G~~~~~~ 176 (204)
T 2amj_A 150 FHGVGVDGVYLPFHKANQFLGMEPLPT 176 (204)
T ss_dssp SCSCCHHHHTHHHHHHHHHTTCEECCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeecce
Confidence 123334677888899986633
|
| >3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} | Back alignment and structure |
|---|
Probab=84.26 E-value=7.7 Score=35.54 Aligned_cols=104 Identities=11% Similarity=-0.065 Sum_probs=65.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----CCCCCCCceEEEEeecCcC---ch-------HHHHHHHHHHHH
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----RGPWLQQLKFGVFGLGNRQ---YE-------HFNKIGIVLDEE 67 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~avfGlGds~---y~-------~f~~~~~~l~~~ 67 (558)
..+.|||.++.| .+.+|.-.+.|.+++..... ....|.|+++.++...... |. .+...-.-+...
T Consensus 58 ~AD~iv~~~P~y-~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~ 136 (192)
T 3f2v_A 58 THDSLVWQFPIY-WFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELT 136 (192)
T ss_dssp TSSSEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHH
T ss_pred hCCEEEEEcChh-hcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHH
Confidence 467899999999 78899999999999865321 1246899999988765554 41 233444446678
Q ss_pred HHhCCCeEeecCcccCCCCC------chhHHHHHHHHHHHHHHHh
Q 008647 68 LCKQGGARLVPLGLGDDDQC------IEDDFTAWRELVWPELDQL 106 (558)
Q Consensus 68 l~~lGa~~i~~~~~~d~~~~------~~~~~~~W~~~l~~~l~~~ 106 (558)
+.-+|.+.+-+....+.... .+.+++...++..+.|.+.
T Consensus 137 ~~f~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~~~l~~~ 181 (192)
T 3f2v_A 137 AKYCNADYRPPFTFHTIDSNAGYSEAARQEVERSARDYLAWLDAL 181 (192)
T ss_dssp HHHTTCEECCCEEEEC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCeEeeeEEEeccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 88899986644333332211 2345555555544545543
|
| >3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.42 E-value=2.8 Score=39.05 Aligned_cols=101 Identities=5% Similarity=-0.029 Sum_probs=66.7
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCch-----HHHHHHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYE-----HFNKIGIVLDEELC 69 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y~-----~f~~~~~~l~~~l~ 69 (558)
.+.+||+++.| .+..|.-.+.|.+++..... +...|.++++.++..-...|. .|...-..+...|.
T Consensus 93 aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~l~~~l~ 171 (211)
T 3p0r_A 93 ADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYVASMMG 171 (211)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBSHHHHHHHHH
T ss_pred CCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHHHHHHHHHHH
Confidence 57899999999 78899999999999964321 123588999988875434452 13334566778888
Q ss_pred hCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 70 KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 70 ~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
-+|.+.+-....... ....+.-++|+++..+.+.+
T Consensus 172 ~~G~~~v~~i~~~g~-~~~~~~~~~~l~~a~~~~~~ 206 (211)
T 3p0r_A 172 FFGATNMETVVIEGH-NQFPDKAEEIITAGLEEAAK 206 (211)
T ss_dssp HTTCCSCEEEEEECT-TTSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCeeeEEEEecc-ccCchHHHHHHHHHHHHHHH
Confidence 899986533322222 22234667887766555544
|
| >3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ... | Back alignment and structure |
|---|
Probab=83.10 E-value=3.4 Score=39.01 Aligned_cols=106 Identities=11% Similarity=-0.117 Sum_probs=69.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCc---Cch--HHHHHHHH----H
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNR---QYE--HFNKIGIV----L 64 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds---~y~--~f~~~~~~----l 64 (558)
.++.|||+++.| .|.+|.-.+.|.+++..... ....|.|+++.++..... .|. .++...+. +
T Consensus 92 ~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g~~~~~~~~l~p~ 170 (228)
T 3tem_A 92 EADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPL 170 (228)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTSTTCCHHHHHHHH
T ss_pred hCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhccccCCHHHHHHHH
Confidence 367899999999 78999999999999864311 124589999988855443 342 12222222 2
Q ss_pred H-HHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhhc
Q 008647 65 D-EELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLR 108 (558)
Q Consensus 65 ~-~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~~ 108 (558)
. ..+.-+|.+.+-+....+.....++...+|++++.+.|.....
T Consensus 171 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 171 QHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp HCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1 1334478776644444444444677888999888887776554
|
| >3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=80.47 E-value=6.9 Score=36.75 Aligned_cols=104 Identities=8% Similarity=-0.070 Sum_probs=69.5
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCC-CCceEEEEeecCcCc------hHHHHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWL-QQLKFGVFGLGNRQY------EHFNKIGIVLDEE 67 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l-~~~~~avfGlGds~y------~~f~~~~~~l~~~ 67 (558)
.+.+||+++.| .+..|.-.+.|.+++..... +...+ .+++..|+..-...| ..+......+...
T Consensus 95 aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~~~~~~l~~~ 173 (223)
T 3u7i_A 95 ANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHKYLKAM 173 (223)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTCHHHHHHHHH
T ss_pred CCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHHHHHHHHHHH
Confidence 57899999999 78899999999999965321 11235 788888886644434 2234455677888
Q ss_pred HHhCCCeEeecCcccCCCC-CchhHHHHHHHHHHHHHHHhh
Q 008647 68 LCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 68 l~~lGa~~i~~~~~~d~~~-~~~~~~~~W~~~l~~~l~~~~ 107 (558)
|.-+|.+.+-......... +.++.++++.+++.....+..
T Consensus 174 l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 174 FNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889998764332222222 467777788777665555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 558 | ||||
| d1ja1a1 | 279 | b.43.4.1 (A:240-518) NADPH-cytochrome p450 reducta | 3e-87 | |
| d1f20a1 | 270 | b.43.4.1 (A:963-1232) Neuronal nitric-oxide syntha | 6e-67 | |
| d1ja1a3 | 160 | c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta | 4e-57 | |
| d1ddga1 | 221 | b.43.4.1 (A:226-446) Sulfite reductase flavoprotei | 1e-49 | |
| d1f20a2 | 165 | c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth | 2e-45 | |
| d1ddga2 | 153 | c.25.1.4 (A:447-599) Sulfite reductase flavoprotei | 1e-42 | |
| d1fnda2 | 160 | c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo | 7e-35 | |
| d1jb9a2 | 154 | c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo | 1e-32 | |
| d2bmwa2 | 162 | c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo | 1e-27 | |
| d1ja1a2 | 177 | c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductas | 7e-25 | |
| d1ykga1 | 146 | c.23.5.2 (A:63-208) Sulfite reductase alpha-compon | 8e-21 | |
| d1tlla2 | 202 | c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FM | 3e-20 | |
| d1bvyf_ | 152 | c.23.5.1 (F:) FMN-binding domain of the cytochrome | 8e-18 | |
| d1a8pa2 | 158 | c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo | 3e-12 | |
| d1tvca2 | 141 | c.25.1.2 (A:111-251) Methane monooxygenase compone | 8e-12 | |
| d1gvha3 | 143 | c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d | 9e-12 | |
| d2cnda2 | 146 | c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea | 5e-11 | |
| d1f4pa_ | 147 | c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [ | 8e-11 | |
| d2fcra_ | 173 | c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: | 2e-10 | |
| d1cqxa3 | 142 | c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d | 2e-10 | |
| d1rlja_ | 135 | c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis | 3e-10 | |
| d1qfja2 | 135 | c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase | 2e-09 | |
| d1yoba1 | 179 | c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelan | 3e-09 | |
| d1jb9a1 | 157 | b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxi | 1e-08 | |
| d1krha2 | 133 | c.25.1.2 (A:206-338) Benzoate dioxygenase reductas | 5e-08 | |
| d1umka2 | 147 | c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma | 6e-08 | |
| d1fdra2 | 148 | c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo | 8e-08 | |
| d2piaa2 | 120 | c.25.1.2 (A:104-223) Phthalate dioxygenase reducta | 4e-06 | |
| d1czna_ | 169 | c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus | 2e-05 | |
| d1fuea_ | 163 | c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [Tax | 4e-05 | |
| d1fnda1 | 136 | b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox | 7e-05 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 8e-05 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 3e-04 | |
| d1ag9a_ | 175 | c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: | 8e-05 | |
| d1oboa_ | 169 | c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7 | 5e-04 | |
| d1ep3b2 | 160 | c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase | 0.001 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 269 bits (688), Expect = 3e-87
Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 14/286 (4%)
Query: 122 AAIPEYRVMIHGPTVTSSV-----DNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDR 176
++I +Y +++H + V + N FD +P V R+L++ ++R
Sbjct: 1 SSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQG-TER 59
Query: 177 SCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPR 236
+HLE D+S + I YE+GDHV VY N V + G++LG L+++ SL+ +E+ +
Sbjct: 60 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKK 119
Query: 237 GSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQG--K 294
PFP P T RTAL Y DI NPPR L LA +A+EPSE E L ++S G K
Sbjct: 120 -----HPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGK 174
Query: 295 DDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVT 354
+ Y WVV ++R +L ++ ++PS PPI + P LQ RYY+I+SS + P+ VH+
Sbjct: 175 ELYLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYAIASSSKVHPNSVHIC 233
Query: 355 CALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 400
V +GR++KGV ++W++ P NG + P+F+R S F
Sbjct: 234 AVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQF 279
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 270 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 216 bits (550), Expect = 6e-67
Identities = 80/269 (29%), Positives = 117/269 (43%), Gaps = 17/269 (6%)
Query: 138 SSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGD 196
+ V ++ G ++ + R+ L P S RS I + +G + Y+ GD
Sbjct: 10 TYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGD 69
Query: 197 HVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRG---SSLTPPFPGPCTLR 251
H+GV+ N ++ V + L + + + E T G + PCT+
Sbjct: 70 HLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIF 129
Query: 252 TALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311
A Y DI PP L A+ AT E +RL LS +G +Y +W +++EV
Sbjct: 130 QAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPTMVEV 187
Query: 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHK 369
+ EFPS P LQPRYYSISSSP PD VH+T A+V T G +H
Sbjct: 188 LEEFPSIQMPAT-LLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHH 246
Query: 370 GVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398
GVCS+W+ P F+R +
Sbjct: 247 GVCSSWLNRIQA------DDVVPCFVRGA 269
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 186 bits (473), Expect = 4e-57
Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)
Query: 401 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDE 460
+LP + P+IMVGPGTG+APF GF+QER L++ G ++G LL++GCR D++Y +E
Sbjct: 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREE 60
Query: 461 LNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEG-YLYVCGDAKGMAR 519
L F ++G +++L +AFSRE + K YVQH + LW L+ + G ++YV GDA+ MA+
Sbjct: 61 LARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAK 120
Query: 520 DVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
DV T + IV E ++ ++A VKK +GRY +VW
Sbjct: 121 DVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 168 bits (427), Expect = 1e-49
Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 35/250 (14%)
Query: 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEA 212
+ P +++V +++ +S++ H+E D+ +G+ Y+ GD +GV+ +N V+E
Sbjct: 6 YSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEL 65
Query: 213 GKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIAL 272
+LL G L AL + ++ +
Sbjct: 66 VELLWLK-----------------GDEPVTVEGKTLPLNEALQWHFELTVNTA----NIV 104
Query: 273 AAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPH 332
+AT L + Y + + + M F A + P
Sbjct: 105 ENYATLTRSETLLPLVGDKAKLQHY------AATTPIVDMVRFSPAQLDAEALINLLRP- 157
Query: 333 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP 392
L PR YSI+SS + VHVT +V GR G S+++ + + E
Sbjct: 158 LTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE-----GEVR 211
Query: 393 IFIRPS-NFK 401
+FI + NF+
Sbjct: 212 VFIEHNDNFR 221
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 155 bits (392), Expect = 2e-45
Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMA-LKQDGAQLGPALLFFGCRNRRMDFIYE 458
F LP NP VP I+VGPGTG+APFR F Q+R ++ G P +L FGCR ++D IY
Sbjct: 2 FHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYR 61
Query: 459 DELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDKAAQL--WSLLSKEGYLYVCGDAK 515
+E + +GV EL A+SRE + K+YVQ + ++ A+ +L + G++YVCGD
Sbjct: 62 EETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT 121
Query: 516 GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
MA DV + + I+ +Q + A + + + + RY D++
Sbjct: 122 -MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 163
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 147 bits (372), Expect = 1e-42
Identities = 64/157 (40%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 402 LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDEL 461
LPANP P+IM+GPGTG+APFR F+Q+R A + G FFG + DF+Y+ E
Sbjct: 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWL----FFGNPHFTEDFLYQVEW 56
Query: 462 NNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDV 521
+ +EGV++ + LA+SR+ +K YVQ K+ ++ A+LW ++ ++YVCGDA MA+DV
Sbjct: 57 QRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDV 116
Query: 522 HRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+ L ++ E +D+ A+ + + ++E RY RDV+
Sbjct: 117 EQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 126 bits (318), Expect = 7e-35
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 401 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDE 460
+P +P+ IIM+G GTG+APFR FL + K D + F +Y++E
Sbjct: 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEE 61
Query: 461 LNNFEEEGVIS-ELILAFSRE----GSQKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDA 514
+E+ + L A SRE +K Y+Q +M A +LW +L K+ Y+Y+CG
Sbjct: 62 FEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-L 120
Query: 515 KGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
KGM + + + ++ + ++ + ++ +V+
Sbjct: 121 KGMEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQWNVEVY 160
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 120 bits (301), Expect = 1e-32
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 405 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNF 464
+P+ IM+ GTG+APFRG+L+ + G F +Y++E ++
Sbjct: 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY 60
Query: 465 EEEGVIS-ELILAFSRE----GSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMAR 519
++ + A SRE K YVQ K+ + + +++ LL ++Y CG GM
Sbjct: 61 LKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMP 119
Query: 520 DVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
+ TL + + + + + + + ++ +V+
Sbjct: 120 GIQDTLKKVAERRGE----SWDQKLAQLKKNKQWHVEVY 154
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 106 bits (266), Expect = 1e-27
Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 15/167 (8%)
Query: 402 LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQL-----GPALLFFGCRNRRMDFI 456
LP +P +IM+ GTG+ P R +L + A G + L FG
Sbjct: 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILY 60
Query: 457 YEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSK-----EGYLYVC 511
E+ ++ L A SRE + + + D+ A+ L + + + Y+C
Sbjct: 61 KEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYIC 120
Query: 512 GDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558
G M + L ++ K + GR+ + +
Sbjct: 121 GP-PPMEEGIDAALSAAAAKEGVT----WSDYQKDLKKAGRWHVETY 162
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 99.4 bits (247), Expect = 7e-25
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MLHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKI 60
+ S+ + YG+G+PTDNA FY W + L +KF VFGLGN+ YEHFN +
Sbjct: 66 IDKSLVVFCMATYGEGDPTDNAQDFYDWL---QETDVDLTGVKFAVFGLGNKTYEHFNAM 122
Query: 61 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 107
G +D+ L + G R+ LGLGDDD +E+DF WRE WP + +
Sbjct: 123 GKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFF 169
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 86.7 bits (214), Expect = 8e-21
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGI 62
+ + +T G+GEP + A +K+ + + P L+ F VF LG+ YE F + G
Sbjct: 46 EKLLIVVTSTQGEGEPPEEAVALHKFLF--SKKAPKLENTAFAVFSLGDTSYEFFCQSGK 103
Query: 63 VLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPEL 103
D +L + GG RL+ D + + + WR V L
Sbjct: 104 DFDSKLAELGGERLLDRVDADVEY--QAAASEWRARVVDAL 142
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.9 bits (214), Expect = 3e-20
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 39/151 (25%)
Query: 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN----------------------------- 33
++ L +T +G+G+P +N +F E
Sbjct: 50 EALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSS 109
Query: 34 ----------DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGD 83
+ L ++F VFGLG+R Y HF G +D L + GG R++ + GD
Sbjct: 110 GDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGD 169
Query: 84 DDQCIEDDFTAWRELVWPELDQLLRDEDDAN 114
+ E+ F W + V+ + DD N
Sbjct: 170 ELCGQEEAFRTWAKKVFKAACDVFCVGDDVN 200
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Score = 78.2 bits (192), Expect = 8e-18
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 10 TCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYE-HFNKIGIVLDEEL 68
+G P DNA +F W + ++ +++ VFG G++ + + K+ +DE L
Sbjct: 54 VTASYNGHPPDNAKQFVDWLDQ--ASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETL 111
Query: 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPEL 103
+G + G D E + WRE +W ++
Sbjct: 112 AAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 146
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Score = 62.7 bits (151), Expect = 3e-12
Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 17/157 (10%)
Query: 406 PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 465
P + M+ GTGLAPF +Q+ ++ +L G R + +
Sbjct: 6 PGKHLYMLSTGTGLAPFMSLIQDPEVYERF----EKVVLIHGVRQVNELAYQQFITEHLP 61
Query: 466 EEGVISELILA------------FSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGD 513
+ E + F +G + ++ + + L + ++ +CG
Sbjct: 62 QSEYFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICG- 120
Query: 514 AKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQME 550
+ M + L + + ++++ +E
Sbjct: 121 SPSMLDESCEVLDGFGLKISPRMGEPGDYLIERAFVE 157
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Score = 60.8 bits (146), Expect = 8e-12
Identities = 24/127 (18%), Positives = 36/127 (28%), Gaps = 6/127 (4%)
Query: 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYED 459
F L P V GTGLAP +++ + N + Y D
Sbjct: 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPN-----ETRIYFGVNTEPELFYID 55
Query: 460 ELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMAR 519
EL + E + E Q +D + +Y+CG GM
Sbjct: 56 ELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCG-PPGMID 114
Query: 520 DVHRTLH 526
+
Sbjct: 115 AACELVR 121
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 60.7 bits (146), Expect = 9e-12
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 8/137 (5%)
Query: 402 LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDEL 461
+ P+ ++ G G P L F N + + DE+
Sbjct: 1 MAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHT----AQVNWFHAAENGDVHA-FADEV 55
Query: 462 NNFEEEGVISELILAFSREGSQ---KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMA 518
+ + + K + + ++L S + G
Sbjct: 56 KELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFM 115
Query: 519 RDVHRTLHTIVQEQENV 535
+ + L + +QEN+
Sbjct: 116 QFTAKQLVDLGVKQENI 132
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Score = 58.8 bits (141), Expect = 5e-11
Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 8/143 (5%)
Query: 399 NFKLPANPSV--PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFI 456
+F + + M+ G+G+ P + + L+ L + R +
Sbjct: 2 SFVINGKQRNARRLAMICGGSGITPMYQII--QAVLRDQPEDHTEMHLVYANRTEDDILL 59
Query: 457 YEDELNNFEEEGVISELILAFSREGSQKE----YVQHKMMDKAAQLWSLLSKEGYLYVCG 512
++ E ++ + +E V + + CG
Sbjct: 60 RDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACG 119
Query: 513 DAKGMARDVHRTLHTIVQEQENV 535
+ + L + + N
Sbjct: 120 PPPMIQFAISPNLEKMKYDMANS 142
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Score = 58.2 bits (140), Expect = 8e-11
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 13 YGD--GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCK 70
+GD E D+ + E Q K FG G+ +E+F ++E+L
Sbjct: 59 WGDDSIELQDDFIPLFDSLEE-----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKN 113
Query: 71 QGGARLVPLGLGDDD-QCIEDDFTAWRELVWPEL 103
G + D D + DD W V +
Sbjct: 114 LGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147
|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Chondrus crispus [TaxId: 2769]
Score = 57.4 bits (138), Expect = 2e-10
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 25/119 (21%)
Query: 10 TCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ--YEHFNKIGIVLDEE 67
+ G T+ + + F ++ L +FGLG+ + ++F + +
Sbjct: 53 APTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDC 112
Query: 68 LCKQG---------------------GARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 103
KQG + + L L + +E W E V E
Sbjct: 113 FAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAVVSET 171
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Score = 56.5 bits (135), Expect = 2e-10
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 9/134 (6%)
Query: 405 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNF 464
+ PI+++ G GL P L+ + A + G RN + + +
Sbjct: 3 DAKTPIVLISGGVGLTPMVSMLKVALQ-----APPRQVVFVHGARNSAVHAMRDRLREAA 57
Query: 465 EEEG---VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDV 521
+ + + ++Y ++D S+L + Y+CG R
Sbjct: 58 KTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICG-PIPFMRMQ 116
Query: 522 HRTLHTIVQEQENV 535
H L + + +
Sbjct: 117 HDALKNLGIHEARI 130
|
| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavoprotein NrdI domain: Flavoprotein NrdI species: Bacillus subtilis [TaxId: 1423]
Score = 56.1 bits (135), Expect = 3e-10
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 9 LTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEE 67
+T G+ + F + + L GV GN+ + ++F K + +
Sbjct: 50 VTYTTNFGQVPASTQSFLEKY----------AHLLLGVAASGNKVWGDNFAKSADTISRQ 99
Query: 68 LCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 107
+ G D + FT E V + +
Sbjct: 100 YQVPILHKFELSGTSKD----VELFTQEVERVVTKSSAKM 135
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 7/121 (5%)
Query: 405 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNF 464
+ P+I++ GTG + R L +A + ++G R + + +
Sbjct: 3 DEERPMILIAGGTGFSYARSILLTALARNPNRDITI----YWGGREEQHLYDLCELEALS 58
Query: 465 EEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRT 524
+ + + + E + + +L E +Y+ G MA+
Sbjct: 59 LKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTL--AEHDIYIAG-RFEMAKIARDL 115
Query: 525 L 525
Sbjct: 116 F 116
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Score = 54.7 bits (131), Expect = 3e-09
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 28/119 (23%)
Query: 13 YGDGEPTDNAARFYKWFTEG---NDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEE 67
G+GE ++ E G +FGLG++ E++ L
Sbjct: 57 LGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSF 116
Query: 68 LCKQGG---------------------ARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 103
+G + V L L D+Q ++ AW + PE
Sbjct: 117 FKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQSGKTDERVAAWLAQIAPEF 175
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 51.9 bits (124), Expect = 1e-08
Identities = 22/100 (22%), Positives = 29/100 (29%), Gaps = 15/100 (15%)
Query: 314 EFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALV----YGPTPT---GR 366
+ PP AP R YSI+S+ V Y T
Sbjct: 65 QSYGVIPPGENPKKPGAPQ-NVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDP 123
Query: 367 IHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPAN 405
GVCS ++ N+ P GD + LP
Sbjct: 124 SKNGVCSNFLCNSKP----GDK--IQLTGPSGKIMLLPEE 157
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Score = 49.9 bits (118), Expect = 5e-08
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 409 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468
P++M+ GTG+APF LQ + P L FG ++L+ +++
Sbjct: 7 PVLMLAGGTGIAPFLSMLQVLEQKGSE----HPVRLVFGVTQDCDLV-ALEQLDALQQKL 61
Query: 469 VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL 525
E + + ++ + + + L E +Y+CG M V L
Sbjct: 62 PWFEYRTVVAHA--ESQHERKGYVTGHIEYDWLNGGEVDVYLCG-PVPMVEAVRSWL 115
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 6e-08
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 5/144 (3%)
Query: 394 FIRPSNFKLPANPSV-PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRR 452
IRP P +V + M+ GTG+ P ++ M D L F + +
Sbjct: 4 AIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMK---DPDDHTVCHLLFANQTEK 60
Query: 453 MDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKA-AQLWSLLSKEGYLYVC 511
+ + + +L R +Y Q + ++ +E + +C
Sbjct: 61 DILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMC 120
Query: 512 GDAKGMARDVHRTLHTIVQEQENV 535
G + L + E
Sbjct: 121 GPPPMIQYACLPNLDHVGHPTERC 144
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Score = 49.6 bits (117), Expect = 8e-08
Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 11/145 (7%)
Query: 409 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468
+ M+ GT + P+ L+ L + +L R +
Sbjct: 8 TLWMLATGTAIGPYLSILRLGKDLDRF----KNLVLVHAARYAADLSYLPLMQELEKRYE 63
Query: 469 VISELILAFSREGSQKEYVQHKMMD------KAAQLWSLLSKEGYLYVCGDAKGMARDVH 522
+ SRE + ++ + + ++ +CG M RD
Sbjct: 64 GKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCG-NPQMVRDTQ 122
Query: 523 RTLHTIVQEQENVDSSKAESIVKKF 547
+ L Q +++ + +
Sbjct: 123 QLLKETRQMTKHLRRRPGHMTAEHY 147
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Score = 44.1 bits (103), Expect = 4e-06
Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 18/134 (13%)
Query: 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYE 458
F L I+V G G+ P ++ A L++ R+ +
Sbjct: 1 EFPLDKRAK-SFILVAGGIGITPMLSMARQLRAEGLR-----SFRLYYLTRD-PEGTAFF 53
Query: 459 DELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMA 518
DEL + E + ++ ++Y CG + +
Sbjct: 54 DELTSDEWRSDVKIHHDHGDPTK----------AFDFWSVFEKSKPAQHVYCCG-PQALM 102
Query: 519 RDVHRTLHTIVQEQ 532
V
Sbjct: 103 DTVRDMTGHWPSGT 116
|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Synechococcus elongatus PCC 7942 [TaxId: 1140]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 28/118 (23%)
Query: 10 TCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 69
+ GE + Y N +G +++ + G ++F +L+E++
Sbjct: 54 CPTWNVGELQSDWEGIYDDLDSVNFQG---KKVAYFGAGDQVGYSDNFQDAMGILEEKIS 110
Query: 70 KQGGARLVP-------------------LGLGDDDQCIEDDFT-----AWRELVWPEL 103
G + +GL D+ + D T W + E
Sbjct: 111 SLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDN-QPDLTKNRIKTWVSQLKSEF 167
|
| >d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Helicobacter pylori [TaxId: 210]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 28/113 (24%)
Query: 13 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 72
G G+ + F G+ GLG++ + +
Sbjct: 54 AGAGDLQTDWEDFLGTLEA-----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA 108
Query: 73 ---------------------GARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 102
G + V L + +D+Q ++ W E V
Sbjct: 109 GKVVGQTSTDGYHFAASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVRGS 161
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 40.8 bits (95), Expect = 7e-05
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 333 LQPRYYSISSSPRFAPDRVH---VTCALVYGPTPTGRIHKGVCSTWMKNAIP 381
+ R YSI+SS + + G KGVCS ++ + P
Sbjct: 72 HKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKP 123
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 40.5 bits (94), Expect = 8e-05
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCD 206
+ + P V L K H++FD++G + Y G +G+ D
Sbjct: 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD 60
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 39.0 bits (90), Expect = 3e-04
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 331 PHLQPRYYSISSSPRFAPDRVHVTCALV----YGPTPTGRIHKGVCSTWMKNAIP 381
+ R YSI+S+ V Y +G GVCST++ + P
Sbjct: 64 KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP 118
|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Escherichia coli [TaxId: 562]
Score = 41.2 bits (96), Expect = 8e-05
Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 31/127 (24%)
Query: 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVF--GLGNRQYEHFNKI 60
+ I L + GE + F+ E +F G E+F
Sbjct: 46 YDILLLGIPTWYYGEAQCDWDDFFPTLEE-----IDFNGKLVALFGCGDQEDYAEYFCDA 100
Query: 61 GIVLDEELCKQGGARL----------------------VPLGLGDDDQ--CIEDDFTAWR 96
+ + + +G + V L + +D Q + W
Sbjct: 101 LGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWV 160
Query: 97 ELVWPEL 103
+ + EL
Sbjct: 161 KQISEEL 167
|
| >d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]
Score = 38.9 bits (90), Expect = 5e-04
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 26/124 (20%)
Query: 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGI 62
+ + GE + Y + + + + + G ++F
Sbjct: 47 YQYLIIGCPTLNIGELQSDWEGLYSELDDVD---FNGKLVAYFGTGDQIGYADNFQDAIG 103
Query: 63 VLDEELCKQGGA---------------------RLVPLGLGDDDQC--IEDDFTAWRELV 99
+L+E++ ++GG + V L L +D+Q +D +W +
Sbjct: 104 ILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQL 163
Query: 100 WPEL 103
E
Sbjct: 164 KSEF 167
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 37.4 bits (86), Expect = 0.001
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 409 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 467
I+++G G G+ P ++ + G + I E+E +N +
Sbjct: 10 KILIIGGGIGVPPLYELAKQLE------KTGCQMTILLGFASEN-VKILENEFSNLKNV 61
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 558 | |||
| d1ja1a1 | 279 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1f20a1 | 270 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 100.0 | |
| d1ddga1 | 221 | Sulfite reductase flavoprotein {Escherichia coli [ | 100.0 | |
| d1ja1a3 | 160 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1f20a2 | 165 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 99.97 | |
| d1ddga2 | 153 | Sulfite reductase flavoprotein {Escherichia coli [ | 99.97 | |
| d1fnda2 | 160 | Ferredoxin reductase (flavodoxin reductase) {Spina | 99.96 | |
| d1jb9a2 | 154 | Ferredoxin reductase (flavodoxin reductase) {Maize | 99.95 | |
| d2bmwa2 | 162 | Ferredoxin reductase (flavodoxin reductase) {Cyano | 99.94 | |
| d1ja1a2 | 177 | NADPH-cytochrome p450 reductase, N-terminal domain | 99.94 | |
| d1ykga1 | 146 | Sulfite reductase alpha-component CysJ N-terminal | 99.92 | |
| d1tlla2 | 202 | Nitric oxide (NO) synthase FMN domain {Rat (Rattus | 99.91 | |
| d1bvyf_ | 152 | FMN-binding domain of the cytochrome P450bm-3 {Bac | 99.89 | |
| d1tvca2 | 141 | Methane monooxygenase component C, MmoC {Methyloco | 99.87 | |
| d1krha2 | 133 | Benzoate dioxygenase reductase {Acinetobacter sp. | 99.85 | |
| d1qfja2 | 135 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 99.81 | |
| d1f4pa_ | 147 | Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | 99.8 | |
| d1jb9a1 | 157 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.8 | |
| d1fdra2 | 148 | Ferredoxin reductase (flavodoxin reductase) {Esche | 99.79 | |
| d1cqxa3 | 142 | Flavohemoglobin, C-terminal domain {Alcaligenes eu | 99.79 | |
| d1gvha3 | 143 | Flavohemoglobin, C-terminal domain {Escherichia co | 99.78 | |
| d1umka2 | 147 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 99.77 | |
| d2fcra_ | 173 | Flavodoxin {Chondrus crispus [TaxId: 2769]} | 99.75 | |
| d2piaa2 | 120 | Phthalate dioxygenase reductase {Pseudomonas cepac | 99.75 | |
| d2cnda2 | 146 | Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | 99.74 | |
| d1yoba1 | 179 | Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | 99.72 | |
| d1ag9a_ | 175 | Flavodoxin {Escherichia coli [TaxId: 562]} | 99.7 | |
| d1czna_ | 169 | Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI | 99.7 | |
| d1fnda1 | 136 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.69 | |
| d1a8pa2 | 158 | Ferredoxin reductase (flavodoxin reductase) {Azoto | 99.66 | |
| d1rlja_ | 135 | Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423] | 99.66 | |
| d2bmwa1 | 133 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.65 | |
| d1ep3b2 | 160 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 99.54 | |
| d1oboa_ | 169 | Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11 | 99.49 | |
| d1fuea_ | 163 | Flavodoxin {Helicobacter pylori [TaxId: 210]} | 99.41 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 98.86 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 98.67 | |
| d1fdra1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 98.65 | |
| d1qfja1 | 97 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 98.62 | |
| d1cqxa2 | 111 | Flavohemoglobin, central domain {Alcaligenes eutro | 98.52 | |
| d1a8pa1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 98.5 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 98.5 | |
| d1krha1 | 100 | Benzoate dioxygenase reductase {Acinetobacter sp. | 98.44 | |
| d2cnda1 | 114 | Nitrate reductase core domain {Corn (Zea mays) [Ta | 98.4 | |
| d2piaa1 | 103 | Phthalate dioxygenase reductase {Pseudomonas cepac | 98.38 | |
| d1tvca1 | 109 | Methane monooxygenase component C, MmoC {Methyloco | 98.34 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 98.34 | |
| d1gvha2 | 107 | Flavohemoglobin, central domain {Escherichia coli | 98.25 | |
| d1ep3b1 | 101 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 98.2 | |
| d1umka1 | 124 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 98.01 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 98.01 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 95.99 | |
| d1nni1_ | 171 | Azobenzene reductase {Bacillus subtilis [TaxId: 14 | 91.35 | |
| d1sqsa_ | 232 | Hypothetical protein SP1951 {(Streptococcus pneumo | 89.93 | |
| d1t0ia_ | 185 | Hypothetical protein Ylr011wp {Baker's yeast (Sacc | 88.75 | |
| d1rtta_ | 174 | Hypothetical protein PA1204 {Pseudomonas aeruginos | 85.87 | |
| d2z98a1 | 200 | ACP phosphodiesterase AcpD {Escherichia coli [TaxI | 85.73 | |
| d1krha1 | 100 | Benzoate dioxygenase reductase {Acinetobacter sp. | 83.55 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.5e-49 Score=396.07 Aligned_cols=247 Identities=40% Similarity=0.738 Sum_probs=228.1
Q ss_pred CCCCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEE
Q 008647 147 PNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSL 226 (558)
Q Consensus 147 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~ 226 (558)
.+...||+.++||.|+|++|++|+. +++|+++||+|||++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++
T Consensus 31 ~~~~~~y~~~nP~~A~v~~n~~L~~-~s~k~~~Hie~dl~~s~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~ 109 (279)
T d1ja1a1 31 ENQKPPFDAKNPFLAAVTANRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSL 109 (279)
T ss_dssp TSCCSSCBTTBCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccCCCCCCCCCCEEeEEEEEEEeCC-CCCccEEEEEEEcCCCCceecCCCEEEEEeCCCHHHHHHHHHHcCCCCceEEEe
Confidence 3467889999999999999999995 677999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCC--CchhHHHHHHhhc
Q 008647 227 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSP--QGKDDYSQWVVAS 304 (558)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~--~~~~~~~~~~~~~ 304 (558)
....... ....|+|.|+|++++|++|+||+++|++.+|+.|+.||+|+.+|++|++|++. ++.+.|.+|+.++
T Consensus 110 ~~~~~~~-----~~~~p~p~~~tl~~lL~~~~Di~~~p~k~~l~~La~~a~~~~~k~~L~~l~~~~~~~~~~y~~~~~~~ 184 (279)
T d1ja1a1 110 NNLDEES-----NKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEA 184 (279)
T ss_dssp EESCTTC-----SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHGGGCSSSHHHHHHHHHTTTT
T ss_pred ccCCCcc-----ccccCCCCchhHHHHHHhhccccCCCcHHHHHHHHHHcCChHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 8766532 24668999999999999999999999999999999999999999999999764 5678899999999
Q ss_pred CCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCC
Q 008647 305 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEG 384 (558)
Q Consensus 305 ~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~ 384 (558)
+++++|+|.+||++++|+++|++++ |+++||+|||||+|..++++++|||.+|+|.+++|+.+.|+||+||.++.+|++
T Consensus 185 ~~~ildlL~~fps~~~pl~~ll~~l-p~L~PR~YSISSSp~~~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~~~~ 263 (279)
T d1ja1a1 185 RRHILAILQDYPSLRPPIDHLCELL-PRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGE 263 (279)
T ss_dssp TCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCCCST
T ss_pred CCCHHHHHhhCcccCCCHHHHHHhC-ccCCCceeeEecCcccCCCEEEEEEEEEEeecCCCCcccccchHHHhhcCCCCC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999865
Q ss_pred CCCccEEEEEeeCCCC
Q 008647 385 NGDCSWAPIFIRPSNF 400 (558)
Q Consensus 385 ~~~~~~v~v~~p~g~F 400 (558)
..++..|+|+++.++|
T Consensus 264 ~~~~~~vpifir~s~F 279 (279)
T d1ja1a1 264 NGGRALVPMFVRKSQF 279 (279)
T ss_dssp TSSCCEEEEEEECCSC
T ss_pred cCCceEEEEEEcCCCC
Confidence 5455589999988876
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.3e-46 Score=373.60 Aligned_cols=236 Identities=33% Similarity=0.564 Sum_probs=208.7
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecCCHHHHHHHHHHhCCCCc--cEEEEecC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQSLE--LLFSLHTD 229 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~--~~~~~~~~ 229 (558)
++.++||.|+|++|++|+.++++|+++||+||+++ .+++|+|||+|+|+|.|+++.|++++++||++++ ..|++...
T Consensus 25 ~~~k~~~~a~v~~~~~L~~~~s~r~t~hield~~g~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~ 104 (270)
T d1f20a1 25 VHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEML 104 (270)
T ss_dssp HHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEE
T ss_pred hccCCcEeeEEEEEEeccCCCCCccEEEEEEEcCCCCCCeEcCCCEEEEEeCCCHHHHHHHHHHhCCCCccCEEEEeeec
Confidence 55788999999999999999999999999999985 4799999999999999999999999999999874 55665543
Q ss_pred CCCCCCCC---CCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCC
Q 008647 230 NEDGTPRG---SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 306 (558)
Q Consensus 230 ~~~~~~~~---~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~ 306 (558)
.......+ .....+++.|+|++++|++|+||+++|++.+|+.||.||+|+.+|++|.+|+ +|.++|.+|+..+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~p~tl~~~l~~~~Di~~~p~~~~l~~La~~~~~~~ek~~L~~l~--~~~~~~~~~~~~~~~ 182 (270)
T d1f20a1 105 EERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNP 182 (270)
T ss_dssp EEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHT--TCSHHHHHHHHHHCC
T ss_pred ccccccccccccccccCCCCCccHHHHHHhheecccCCCHHHHHHHHHHCCCHHHHHHHHhhc--ccHHHHHHHHhccCC
Confidence 32221111 1122345558999999999999999999999999999999999999999996 688999999999999
Q ss_pred CHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCC--CcccCcccHHhhhcCCCCC
Q 008647 307 SLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIPLEG 384 (558)
Q Consensus 307 ~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~--~~~~G~~S~~L~~l~~G~~ 384 (558)
|++|+|.+||++++|++.|++++ |+++||+|||||+|..++++++|+|++|+|+++++ +.+.|+||+||+++++|
T Consensus 183 tlldvL~~fps~~~pl~~ll~~l-p~L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~G-- 259 (270)
T d1f20a1 183 TMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQAD-- 259 (270)
T ss_dssp CHHHHHHHSTTBCBCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTT--
T ss_pred cHHHHHHhccccCCCHHHHHHhc-cccccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCC--
Confidence 99999999999999999999999 99999999999999988999999999999988754 56889999999999999
Q ss_pred CCCccEEEEEeeC
Q 008647 385 NGDCSWAPIFIRP 397 (558)
Q Consensus 385 ~~~~~~v~v~~p~ 397 (558)
+.|.++++.
T Consensus 260 ----d~v~v~vr~ 268 (270)
T d1f20a1 260 ----DVVPCFVRG 268 (270)
T ss_dssp ----CEEEEEEEC
T ss_pred ----CEEEEEEec
Confidence 899998865
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-39 Score=314.91 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=188.2
Q ss_pred CCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCC
Q 008647 151 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 230 (558)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 230 (558)
.||+..+||.|+|++|++||+++++|+++||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..+++.
T Consensus 4 ~p~~~~~p~~a~v~~n~~Lt~~~~~~~~~hleldl~~~~~~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~--- 80 (221)
T d1ddga1 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE--- 80 (221)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET---
T ss_pred CCCCCCCCEEEEEEeEEEecCCCCCceEEEEEEEcCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCcccccccC---
Confidence 57889999999999999999999999999999999988999999999999999999999999999999999888763
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHH
Q 008647 231 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 310 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d 310 (558)
+.++|++++|++|+||+. |++.+|+.++.++.++.. +..++ +++.+.+|... .++ +
T Consensus 81 --------------~~~~~l~~~l~~~~di~~-~~~~~l~~~a~~~~~~~~---~~~~~---d~~~~~~~~~~--~~~-~ 136 (221)
T d1ddga1 81 --------------GKTLPLNEALQWHFELTV-NTANIVENYATLTRSETL---LPLVG---DKAKLQHYAAT--TPI-V 136 (221)
T ss_dssp --------------TEEEEHHHHHHHHBCCSC-CCHHHHHHHHHHHTCTTT---GGGTT---CTHHHHHHHHH--SCH-H
T ss_pred --------------CCcccHHHHhcccccccC-CcHHHHHHHHHhcCCHHH---hhccC---CHHHHHHHhcc--cch-h
Confidence 237899999999999985 789999999999987632 22333 34556666653 344 5
Q ss_pred HHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCcc
Q 008647 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCS 389 (558)
Q Consensus 311 ~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~ 389 (558)
.|.+||++++|++.|++++ |+++||+|||||+|..++++++|+|++|+|.+ .++.+.|+||+||.+ +++| +
T Consensus 137 ~l~~~~~~~~pl~~ll~~l-p~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~-~~~~r~GvcS~~L~~~l~~g------~ 208 (221)
T d1ddga1 137 DMVRFSPAQLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDV-EGRARAGGASSFLADRVEEE------G 208 (221)
T ss_dssp HHHHHSCCCCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEE-TTEEEECHHHHHHHHSCCSS------C
T ss_pred HHhhcccCCCCHHHHHHhh-hccCceeeeeccccccCCCeeeEEEEEEEeeC-CCCccceecHHHHHhhCCCC------C
Confidence 5567999999999999999 99999999999999988999999999999976 477899999999986 8999 8
Q ss_pred EEEEEeeCC-CCc
Q 008647 390 WAPIFIRPS-NFK 401 (558)
Q Consensus 390 ~v~v~~p~g-~F~ 401 (558)
+|.|+++.+ .|+
T Consensus 209 ~V~v~ir~s~~FR 221 (221)
T d1ddga1 209 EVRVFIEHNDNFR 221 (221)
T ss_dssp EEEEEEECCTTSC
T ss_pred EEEEEEecCCCCC
Confidence 999999876 574
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.3e-37 Score=281.50 Aligned_cols=158 Identities=44% Similarity=0.858 Sum_probs=145.9
Q ss_pred cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecC
Q 008647 401 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSRE 480 (558)
Q Consensus 401 ~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~ 480 (558)
+||.++.+|+||||+|||||||+|||+++....+++...++++||||||+.+.|++|++||+++.+++.++++++++||+
T Consensus 1 rlP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~ 80 (160)
T d1ja1a3 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE 80 (160)
T ss_dssp CCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSSEEEEEETTS
T ss_pred CcCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCCceeEEEeecc
Confidence 47888899999999999999999999998776555556789999999999876999999999999999999999999999
Q ss_pred CCCccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 481 GSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 481 ~~~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+.++.|||+.+.++.+.+++++. .++.||||||++.|+++|+++|.+++++.++++.++|++|+++|+++|||++|||
T Consensus 81 ~~~~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~~r~~~dv~ 159 (160)
T d1ja1a3 81 QAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159 (160)
T ss_dssp SSSCCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccCccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecc
Confidence 88899999999999999999774 5899999997568999999999999999999999999999999999999999999
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=1.6e-31 Score=245.92 Aligned_cols=159 Identities=39% Similarity=0.749 Sum_probs=138.8
Q ss_pred CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHh-hcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALK-QDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~-~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
+|.||.++.+|+||||+|||||||+|||+++.... .++....++++|||+|+...+++|.+++.++.+.+.++++++++
T Consensus 1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 80 (165)
T d1f20a2 1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAY 80 (165)
T ss_dssp TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 59999999999999999999999999999976532 23345678899999988775789999999999999999999999
Q ss_pred ecCCC-CccchhhhhHhc-HHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeE
Q 008647 478 SREGS-QKEYVQHKMMDK-AAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYL 554 (558)
Q Consensus 478 Sr~~~-~k~yvq~~l~~~-~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 554 (558)
||+.. ...|+++.+.+. .+.+++.+ .+++.||+||| ++|+++|+++|.+++.++++++.++|++++++|+++|||+
T Consensus 81 sr~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~r~~ 159 (165)
T d1f20a2 81 SREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 159 (165)
T ss_dssp SSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred eccccCCCCcccchHHHHHHHHHHhhccCCCcEEEEECC-cchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 99865 456888887664 55666655 46899999999 8999999999999999999999999999999999999999
Q ss_pred EeeC
Q 008647 555 RDVW 558 (558)
Q Consensus 555 ~dvw 558 (558)
+|||
T Consensus 160 ~ev~ 163 (165)
T d1f20a2 160 EDIF 163 (165)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9999
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.2e-31 Score=240.64 Aligned_cols=153 Identities=42% Similarity=0.814 Sum_probs=136.5
Q ss_pred CCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCC
Q 008647 402 LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREG 481 (558)
Q Consensus 402 lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~ 481 (558)
||.++.+|+||||+|||||||+|||+++... + ...+++++||+|+...+++|.+|+..+++.+.++++++++|++.
T Consensus 1 LP~d~~~plvlIa~GtGIaP~~s~l~~~~~~---~-~~~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~ 76 (153)
T d1ddga2 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAAD---E-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQ 76 (153)
T ss_dssp CCSSTTSCEEEECCGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSS
T ss_pred CCcCCCCCEEEEECchhHHHHHHHHHHHHHh---c-CCCceEEeecccCcHHHHHhHHHHHHHHHcCCCceEEEEEEecc
Confidence 5778899999999999999999999998863 2 45667778777665548999999999999999999999999998
Q ss_pred CCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 482 SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 482 ~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
....|+++.+..+...+...+..++.+|+|||.+.|+++|+++|.+++++.++++.|+|++++++|+++|||++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e~a~~~~~~l~~~gR~~~e~~ 153 (153)
T d1ddga2 77 KEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153 (153)
T ss_dssp SSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCcccccchHHHHHHHHHhhhccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecC
Confidence 88889999998888877777788899999998345579999999999999999999999999999999999999999
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.96 E-value=7.4e-29 Score=226.40 Aligned_cols=152 Identities=30% Similarity=0.588 Sum_probs=127.4
Q ss_pred cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-cEEEEEEe
Q 008647 401 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFS 478 (558)
Q Consensus 401 ~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~S 478 (558)
.||.++.+|+||||+|||||||+|||+++......+ ...++++||||+|+.+ |++|.+|+.++.+.+.. +.+.+++|
T Consensus 2 ~LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~s 80 (160)
T d1fnda2 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVS 80 (160)
T ss_dssp CCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEET
T ss_pred CCCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHH-HHHHHHHHHHHHHhcCCceeEEEEEc
Confidence 578888999999999999999999999987532211 2357899999999999 99999999999888654 45667777
Q ss_pred cCCC----CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCe
Q 008647 479 REGS----QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRY 553 (558)
Q Consensus 479 r~~~----~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 553 (558)
++.. .+.++++.+......+++.+ ..++.||+||| ++|+++|.++|.+++..++. +|.+|+++|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~l~~~~~~~g~----~a~~~~~~l~~~~ry 155 (160)
T d1fnda2 81 REQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEGI----DWIEYKRQLKKAEQW 155 (160)
T ss_dssp TTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEC-HHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHTTCE
T ss_pred cchhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCC-HHHHHHHHHHHHHHHHhcch----hHHHHHHHHHHcCCe
Confidence 7643 46789999988888888765 45789999999 99999999999999976543 478899999999999
Q ss_pred EEeeC
Q 008647 554 LRDVW 558 (558)
Q Consensus 554 ~~dvw 558 (558)
++|||
T Consensus 156 ~~e~~ 160 (160)
T d1fnda2 156 NVEVY 160 (160)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99999
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.95 E-value=3e-28 Score=220.96 Aligned_cols=148 Identities=27% Similarity=0.489 Sum_probs=123.1
Q ss_pred CCCCCEEEEccCccccchHHHHHHHHHHhhc-CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-cEEEEEEecCCC
Q 008647 405 NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFSREGS 482 (558)
Q Consensus 405 ~~~~plilIa~GtGIAP~~s~l~~~~~~~~~-~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~Sr~~~ 482 (558)
|+++|+||||+|||||||+|||++++..... ....++++||||||+.. |++|.+|+.++.+++.. +.+..+.+++..
T Consensus 1 Dp~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
T d1jb9a2 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRYDKALSREQK 79 (154)
T ss_dssp CTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHHHHHHHCTTTEEEEEEETTTCC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccc-hhHHHHHHHHHHHhCCCCEEEEEEeccCCc
Confidence 4568999999999999999999998763211 12446799999999998 99999999999888654 445556666543
Q ss_pred ----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 483 ----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 483 ----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.++++++.+....+.+..++.+++.|||||| +.|+++|.++|.+++.+++.. |++++.+|+++|||++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~mm~~v~~~L~~~~~~~g~~----~~~~~~~l~~~~r~~~d~w 154 (154)
T d1jb9a2 80 NRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRGES----WDQKLAQLKKNKQWHVEVY 154 (154)
T ss_dssp ----CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHHTCC----HHHHHHHHHHTTCEEEEEC
T ss_pred CcCCcccccchHHHHhHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHCCCEEEecC
Confidence 3578888888888778788888999999999 899999999999999877543 7889999999999999999
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.94 E-value=6.9e-27 Score=213.33 Aligned_cols=151 Identities=25% Similarity=0.491 Sum_probs=123.9
Q ss_pred CCCCCCCCEEEEccCccccchHHHHHHHHHHhhc-----CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-cEEEE
Q 008647 402 LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD-----GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELIL 475 (558)
Q Consensus 402 lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~-----~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~ 475 (558)
||.++.+|+||||||||||||+|||+++...... ....++++|+||+|+.+ |.+|.+|+.++...... +.+++
T Consensus 1 lP~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~-d~~~~~e~~~~~~~~~~~~~~~~ 79 (162)
T d2bmwa2 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEEIQQKYPDNFRLTY 79 (162)
T ss_dssp CCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEE
T ss_pred CCcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchh-HHHHHHHHHHHHHhcCCceEEEE
Confidence 6888889999999999999999999998753211 12457899999999999 99999999998877654 45666
Q ss_pred EEecCCC----CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHC
Q 008647 476 AFSREGS----QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQME 550 (558)
Q Consensus 476 a~Sr~~~----~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~ 550 (558)
+.++... .+.++++...+..+.+...+ ..++.|||||| ++|+++|.+.|.+++.+++.. +.+|+.+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~g~~~~~~----~~~~~~~l~~~ 154 (162)
T d2bmwa2 80 AISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEGVT----WSDYQKDLKKA 154 (162)
T ss_dssp EETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHT
T ss_pred EeecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHhhcccCcc----HHHHHHHHHHC
Confidence 6776543 35678888877777777655 45789999999 899999999999998765544 67899999999
Q ss_pred CCeEEeeC
Q 008647 551 GRYLRDVW 558 (558)
Q Consensus 551 ~Ry~~dvw 558 (558)
|||++|||
T Consensus 155 ~r~~~e~~ 162 (162)
T d2bmwa2 155 GRWHVETY 162 (162)
T ss_dssp TCEEEEEC
T ss_pred CCeEEecC
Confidence 99999999
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=3.1e-27 Score=218.41 Aligned_cols=106 Identities=45% Similarity=0.904 Sum_probs=99.6
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCccc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 82 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~ 82 (558)
+.++||++||||+|++|+|+++||+||++...+ |++++|||||||||.|++||.++++++++|+++||++++|++++
T Consensus 68 ~~~~i~~~ST~g~G~~P~n~~~F~~~L~~~~~~---l~~~~yaVfGlGds~Y~~Fc~a~~~l~~~L~~lGa~~i~~~g~~ 144 (177)
T d1ja1a2 68 KSLVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLG 144 (177)
T ss_dssp TCEEEEEEEEETTTEECGGGHHHHHHHHHCCCC---CTTCEEEEEEEECSSSSSTTHHHHHHHHHHHHTTCEESSCCEEE
T ss_pred cceEEEEEeccCCCCCCHhHHHHHHHHHhcccc---ccCceEEEEecCCccHHHHHHHHHHHHHHHHHcCCcEEEcceee
Confidence 567999999999999999999999999986544 99999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcCCC
Q 008647 83 DDDQCIEDDFTAWRELVWPELDQLLRDED 111 (558)
Q Consensus 83 d~~~~~~~~~~~W~~~l~~~l~~~~~~~~ 111 (558)
|++.+.+++|+.|++++|++|++.++.+.
T Consensus 145 D~~~~~e~~~~~W~~~l~~~L~~~~~~~~ 173 (177)
T d1ja1a2 145 DDDGNLEEDFITWREQFWPAVCEFFGVEA 173 (177)
T ss_dssp ETTTCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99888999999999999999999987543
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=5.8e-26 Score=203.30 Aligned_cols=100 Identities=29% Similarity=0.510 Sum_probs=92.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||+|++|+|++.||++|.+... ..|++++|||||||||+|++||.++++++++|+++||++++|+++
T Consensus 45 ~~~~~i~~~sT~g~G~~P~~~~~f~~~l~~~~~--~~l~~~~~aVfGlGds~Y~~Fc~~~~~l~~~l~~lGa~~i~~~~~ 122 (146)
T d1ykga1 45 SEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKA--PKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVD 122 (146)
T ss_dssp GCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTC--CCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEE
T ss_pred cccceEEEEeecCCCcCchhHHHHHHHHHcccc--cccCCCeEEEEcCcchhHHHHHHHHHHHHHHHHHCCCcEeeCcee
Confidence 467899999999999999999999999976432 238999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
+|++ .+.++++|++++|++|+.
T Consensus 123 ~D~~--~e~~~~~W~~~~~~~L~~ 144 (146)
T d1ykga1 123 ADVE--YQAAASEWRARVVDALKS 144 (146)
T ss_dssp ECTT--CHHHHHHHHHHHHHHHHT
T ss_pred cCCC--CHHHHHHHHHHHHHHHHh
Confidence 9975 689999999999999875
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=9.8e-25 Score=206.44 Aligned_cols=111 Identities=30% Similarity=0.530 Sum_probs=100.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCC---------------------------------------CCCCCCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDR---------------------------------------GPWLQQL 42 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~---------------------------------------~~~l~~~ 42 (558)
.++.+||++||||+|+||+|++.||+||.+...+ ...|+++
T Consensus 49 ~~~~~i~~~sT~g~Ge~p~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 128 (202)
T d1tlla2 49 HEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANV 128 (202)
T ss_dssp GCSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTC
T ss_pred cccceEEeccccCCCCCChhHHHHHHHHHhcccccccccccccccccccccccccchhhhccccccccccccccchhcCc
Confidence 3678999999999999999999999999763211 2369999
Q ss_pred eEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhhcCCCC
Q 008647 43 KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDD 112 (558)
Q Consensus 43 ~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~ 112 (558)
+||||||||++|++||.+|+++|++|.+|||+|++|++++|++.+.++.|++|+++||++|.+.++..++
T Consensus 129 ~faV~GlGds~y~~Fc~~ak~ld~~l~~LGA~ri~~~g~~D~~~~~e~~~~~W~~~l~~~l~~~~~~~~~ 198 (202)
T d1tlla2 129 RFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDD 198 (202)
T ss_dssp EEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred eeEEEccCcccHHHHhhhHHHHHHHHHhCCCcccccchhccCCCCcHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999889999999999999999999976544
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Probab=99.89 E-value=5.9e-24 Score=191.91 Aligned_cols=101 Identities=23% Similarity=0.594 Sum_probs=91.1
Q ss_pred EEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCcccCC
Q 008647 6 YLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDD 84 (558)
Q Consensus 6 ~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~ 84 (558)
+||++||||+|++|+|+.+||++|.+... ..+++++|||||||||+| ++||.++++++++|+++||++|+|++++|+
T Consensus 50 ~i~~~stt~~G~~p~~~~~f~~~l~~~~~--~~~~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l~~lGA~~i~~~~~~D~ 127 (152)
T d1bvyf_ 50 AVLIVTASYNGHPPDNAKQFVDWLDQASA--DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADA 127 (152)
T ss_dssp EEEEEECCBTTBCCTTTHHHHHHHHTCCS--SCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEET
T ss_pred ceEEEeccccCCCcccHHHHHHHHHhcch--hhccCceeeeeeccccchhhhhhhHHHHHHHHHHHcCCeEeECceeecC
Confidence 45566667789999999999999987543 347999999999999999 589999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhc
Q 008647 85 DQCIEDDFTAWRELVWPELDQLLR 108 (558)
Q Consensus 85 ~~~~~~~~~~W~~~l~~~l~~~~~ 108 (558)
.++.+++++.|+++||++|.+.++
T Consensus 128 ~~~~e~~~~~W~~~l~~~L~~~~~ 151 (152)
T d1bvyf_ 128 SDDFEGTYEEWREHMWSDVAAYFN 151 (152)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcC
Confidence 888999999999999999998764
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=99.87 E-value=2.4e-22 Score=179.17 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=99.4
Q ss_pred CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEec
Q 008647 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSR 479 (558)
Q Consensus 400 F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr 479 (558)
|.|+++..+|+||||+|||||||+||++++... + ...+++|+||+|+.+ |++|.+||++|++...+++++.++++
T Consensus 1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~~ 75 (141)
T d1tvca2 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEW---T-APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACVWH 75 (141)
T ss_dssp CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHH---T-CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECCSS
T ss_pred CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHc---C-CCCceEEEeecccch-hhhhHHHHHHHHhhccccccceeecc
Confidence 789988899999999999999999999998763 2 457899999999999 99999999999988888899999998
Q ss_pred CCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 480 EGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 480 ~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+.. .++++++.+.+.... ...+..||+||| ++|++++.+.|.+.+
T Consensus 76 ~~~~~~~~~g~~~~~~~~~~~~----~~~~~~vyiCGp-~~m~~~v~~~l~~~G 124 (141)
T d1tvca2 76 PSGDWEGEQGSPIDALREDLES----SDANPDIYLCGP-PGMIDAACELVRSRG 124 (141)
T ss_dssp CSSCCSSSSSSSSHHHHHHHHH----SSSSSEEEEESS-HHHHHHHHHHHHHHC
T ss_pred cccCcCCccchhHHHHHHhccc----ccccceeeccCC-HHHHHHHHHHHHHcC
Confidence 654 345666665443211 124679999999 999999999987764
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=99.85 E-value=3.3e-22 Score=176.38 Aligned_cols=115 Identities=26% Similarity=0.357 Sum_probs=96.1
Q ss_pred CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC--
Q 008647 405 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS-- 482 (558)
Q Consensus 405 ~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~-- 482 (558)
+..+|+||||||||||||+||++++.. ++ ...+++|+||+|+++ |++|.++|++|+++.++++++.++|+++.
T Consensus 3 d~~rplv~IAgG~GItP~~s~l~~~~~---~~-~~~~i~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~ 77 (133)
T d1krha2 3 DVKRPVLMLAGGTGIAPFLSMLQVLEQ---KG-SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVVAHAESQH 77 (133)
T ss_dssp CCSSCEEEEEEGGGHHHHHHHHHHHHH---HC-CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEETTCCSSS
T ss_pred CCCCCEEEEEccHhHHHHHHHHHHHHH---cC-CCCceEEEEeecchh-HHHHHHHHHHHHHhCCceeeeeeeecccccc
Confidence 456899999999999999999999776 33 457899999999999 99999999999999888899999998764
Q ss_pred -CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 483 -QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 483 -~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
.++++++.+.+... -..+..||+||| ++|+++|.+.|.+.+.
T Consensus 78 ~~~g~v~~~i~~~~~-----~~~~~~vyiCGp-~~m~~~v~~~L~~~Gv 120 (133)
T d1krha2 78 ERKGYVTGHIEYDWL-----NGGEVDVYLCGP-VPMVEAVRSWLDTQGI 120 (133)
T ss_dssp SEESCSGGGCCGGGG-----GGGCSEEEEEEE-HHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHhhc-----ccccceEEEECC-HHHHHHHHHHHHHcCC
Confidence 35688877755321 124789999999 9999999999988653
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.6e-20 Score=164.36 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=89.5
Q ss_pred CCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC-
Q 008647 404 ANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS- 482 (558)
Q Consensus 404 ~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~- 482 (558)
++..+|+||||+|||||||+||+++++.. + ..++++|+||+|+.+ |++|.+++.++......+.+..+.++...
T Consensus 2 ed~~rplv~IagGtGiaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 76 (135)
T d1qfja2 2 DDEERPMILIAGGTGFSYARSILLTALAR---N-PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVEQPEAG 76 (135)
T ss_dssp SCSSSCEEEEEETTCHHHHHHHHHHHHHH---C-TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEESSCCTT
T ss_pred CCCCCCEEEEECceeHHHHHHHHHHHHHc---c-cccceeEEEecccHh-HHHHHHHHHHHHHhcCccceeeeecccCcc
Confidence 35678999999999999999999998763 2 567899999999999 99999999999998888777777776654
Q ss_pred ---CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHH
Q 008647 483 ---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLH 526 (558)
Q Consensus 483 ---~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~ 526 (558)
..+++++.+.+... ...+..+||||| ++|++++.+.|.
T Consensus 77 ~~~~~g~~~~~~~~~~~-----~~~~~~~yvCGp-~~m~~~~~~~L~ 117 (135)
T d1qfja2 77 WRGRTGTVLTAVLQDHG-----TLAEHDIYIAGR-FEMAKIARDLFC 117 (135)
T ss_dssp CCSEESCHHHHHHHHCS-----CCTTCEEEEESC-HHHHHHHHHHHH
T ss_pred cccccCchHHHHHHhcc-----CcccCceEeeCC-HHHHHHHHHHHH
Confidence 24566655533210 124689999999 999999988774
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Probab=99.80 E-value=1e-20 Score=169.64 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=87.4
Q ss_pred CCcEEEEEeccCCCC--CCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDG--EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G--~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.++++||++||||+| ++|++++.|++.|.... |++++|||||||||+|++||.++++++++|+++||+++.++
T Consensus 48 ~~~~vii~~sT~g~g~~~~~~~~~~f~~~l~~~~-----l~~~~~avfGlGds~y~~f~~a~~~l~~~l~~lGa~~v~~~ 122 (147)
T d1f4pa_ 48 GFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETG-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDG 122 (147)
T ss_dssp TCSEEEEEECEECSSSCEECTTTHHHHHTGGGSC-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCC
T ss_pred ccCeEEEEecccCCcCCChhhhHHHhhhcccccc-----ccCCcEEEEecCCccHHHHhHHHHHHHHHHHhCCCEEeeCC
Confidence 367899999999977 56899999999997754 88999999999999999999999999999999999999999
Q ss_pred cccCCCC-CchhHHHHHHHHHHHHH
Q 008647 80 GLGDDDQ-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 ~~~d~~~-~~~~~~~~W~~~l~~~l 103 (558)
+++|.+. +.+++|..|.++|+.+|
T Consensus 123 ~~~d~~~~~~~~~~~~W~~~l~~al 147 (147)
T d1f4pa_ 123 LRIDGDPRAARDDIVGWAHDVRGAI 147 (147)
T ss_dssp EEEESCGGGGHHHHHHHHHHHHTTC
T ss_pred EEEecCCccchHHHHHHHHHHHHhC
Confidence 9999765 67889999999988653
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.80 E-value=7e-20 Score=164.43 Aligned_cols=128 Identities=19% Similarity=0.240 Sum_probs=106.6
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.|..++||.|+|++|++|+..++.+.++||+|++++ ++.|+|||.|+|+|+|.+
T Consensus 22 ~y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~-~~~y~~Gq~lgI~p~~~~------------------------- 75 (157)
T d1jb9a1 22 TYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGEN------------------------- 75 (157)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBC-------------------------
T ss_pred cCCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCC-CccEecCceEEEEcCCcc-------------------------
Confidence 477899999999999999999999999999999976 899999999999997742
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
..
T Consensus 76 -~~----------------------------------------------------------------------------- 77 (157)
T d1jb9a1 76 -PK----------------------------------------------------------------------------- 77 (157)
T ss_dssp -TT-----------------------------------------------------------------------------
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCC---CeEEEEEEEEEccCC----CCCcccCcccHHhhhcCCCCC
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAP---DRVHVTCALVYGPTP----TGRIHKGVCSTWMKNAIPLEG 384 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~---~~i~l~v~vv~~~~~----~~~~~~G~~S~~L~~l~~G~~ 384 (558)
... .++++|.|||||+|..++ +.+.++|+.+.|..+ .++.+.|+||+||+++++|
T Consensus 78 ---------------~~~-~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~G-- 139 (157)
T d1jb9a1 78 ---------------KPG-APQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG-- 139 (157)
T ss_dssp ---------------STT-CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTT--
T ss_pred ---------------ccC-ccCCcCEEEecCCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCCc--
Confidence 001 456899999999997654 357888887766443 3678899999999999999
Q ss_pred CCCccEEEEEeeCC-CCcCCCC
Q 008647 385 NGDCSWAPIFIRPS-NFKLPAN 405 (558)
Q Consensus 385 ~~~~~~v~v~~p~g-~F~lp~~ 405 (558)
+.|.|++|.| .|.||+|
T Consensus 140 ----d~V~i~gp~g~~F~lPed 157 (157)
T d1jb9a1 140 ----DKIQLTGPSGKIMLLPEE 157 (157)
T ss_dssp ----CEEEEEEEECSTTCCCCS
T ss_pred ----CEEEEEecCCCcccCCCC
Confidence 9999999999 6888864
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=4.4e-20 Score=165.39 Aligned_cols=135 Identities=15% Similarity=0.217 Sum_probs=94.2
Q ss_pred CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE-EEEEecCCCC--
Q 008647 407 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL-ILAFSREGSQ-- 483 (558)
Q Consensus 407 ~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~-~~a~Sr~~~~-- 483 (558)
.+++||||+|||||||+||++++.. .+ ..++++||||+|+.+ |++|.++++++.+....+.. ..+.++++..
T Consensus 6 ~k~lvlIa~GtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T d1fdra2 6 CETLWMLATGTAIGPYLSILRLGKD---LD-RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLRIQTVVSRETAAGS 80 (148)
T ss_dssp CSEEEEEEEGGGGHHHHHHHHHCCS---CT-TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEEEEEEESSSCCTTE
T ss_pred CCEEEEEEcCeEHHHHHHHHHHHHH---hC-CCCcEEEEEecCcHH-HHHHHHHhhhHHHhccccccccccccCcccccc
Confidence 4789999999999999999998754 22 578999999999999 99999999999888655544 4455555442
Q ss_pred -ccchhhhhHhcH--HHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 484 -KEYVQHKMMDKA--AQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 484 -k~yvq~~l~~~~--~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.+++++.+.... +.+...+ ..++.|||||| ++|+++|.+.|.+.. ++++ ....+.|+|+.|-|
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~e~~----g~~e-------~~~~~~g~i~~E~~ 147 (148)
T d1fdra2 81 LTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETR----QMTK-------HLRRRPGHMTAEHY 147 (148)
T ss_dssp EESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHH----CCCB-------CBTTBCCSEEEEEC
T ss_pred ccccccchHHHHHHHHhhccccccccceEEEECC-HHHHHHHHHHHHHhc----CCCc-------cCCCCCCeEEEEeC
Confidence 234444443321 1111112 24567999999 999999999987643 2221 01133578888875
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.79 E-value=4.4e-20 Score=164.18 Aligned_cols=117 Identities=20% Similarity=0.356 Sum_probs=89.0
Q ss_pred CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCc
Q 008647 405 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK 484 (558)
Q Consensus 405 ~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k 484 (558)
+..+|+||||+|||||||+||++++.. ....+++|+||+|+++ |++|.+++.++++...+++++.+++++....
T Consensus 3 d~~~plvliagGtGIaP~~sil~~~~~-----~~~~~i~li~~~r~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (142)
T d1cqxa3 3 DAKTPIVLISGGVGLTPMVSMLKVALQ-----APPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDLFVFYDQPLPED 76 (142)
T ss_dssp TCCSCEEEEESSCCHHHHHHHHHHHTC-----SSCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEEEEEESSCCTTC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHH-----cCCCcEEEEeeccChh-hhhhHHHHHHHHHhCCCeEEEEEEcccCCcc
Confidence 457899999999999999999987653 2457899999999999 9999999999999988889999999876421
Q ss_pred ----cchhhhhHhcHHHHHHh-hhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 485 ----EYVQHKMMDKAAQLWSL-LSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 485 ----~yvq~~l~~~~~~l~~~-~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.+...... ....+.+. ...++.|||||| ++|++++.+.|.+.+
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 124 (142)
T d1cqxa3 77 VQGRDYDYPGLV-DVKQIEKSILLPDADYYICGP-IPFMRMQHDALKNLG 124 (142)
T ss_dssp CBTTTBSEESSC-CGGGSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHTT
T ss_pred cccccccchhhh-HHHHHHhhcccCCceEEEECC-hhHHHHHHHHHHHcC
Confidence 11111110 01111222 235789999999 999999999987754
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.5e-20 Score=163.83 Aligned_cols=118 Identities=14% Similarity=0.246 Sum_probs=89.4
Q ss_pred CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCC--
Q 008647 406 PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-- 483 (558)
Q Consensus 406 ~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~-- 483 (558)
..+|+||||+|||||||+||++++... + ..++++|+||+|+.+ |++|.+++.++.++.+.++++.+++++...
T Consensus 5 ~d~plv~IagGtGiaP~~s~l~~l~~~---~-~~~~i~l~~~~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T d1gvha3 5 DDTPVTLISAGVGQTPMLAMLDTLAKA---G-HTAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHTWYRQPSEADR 79 (143)
T ss_dssp TTCCEEEEEEGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEEEEEESSCCHHHH
T ss_pred CCCCEEEEEchhhHHHHHHHHHHHHHc---C-CCceEEEEeecCCHH-HHHHHHHHHHHHHhCCceEEEEEEeccCcccc
Confidence 458999999999999999999998763 2 457899999999999 999999999999998888899999876541
Q ss_pred -ccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 484 -KEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 484 -k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
..+++.........+.+.. ..+..+|+||| ++|+++|.+.|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~iCGp-~~m~~~v~~~L~~~G 126 (143)
T d1gvha3 80 AKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGP-VGFMQFTAKQLVDLG 126 (143)
T ss_dssp HHTCCSEESSCCGGGSSSCCCCTTCEEEEESC-HHHHHHHHHHHHHTT
T ss_pred cccceeeeccccHHHHHhcccccCcEEEEeCc-HHHHHHHHHHHHHcC
Confidence 1122111111111111111 24689999999 999999999888754
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=9.9e-20 Score=163.11 Aligned_cols=123 Identities=18% Similarity=0.301 Sum_probs=90.6
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CccEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISELI 474 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~-~~~~~~ 474 (558)
|.+.+....+..++++|||+|||||||+||+++++. ++...++++|+||+|+.+ |++|++||+++++.. ..++++
T Consensus 7 p~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~---~~~~~~~i~L~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 82 (147)
T d1umka2 7 PDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMK---DPDDHTVCHLLFANQTEK-DILLRPELEELRNKHSARFKLW 82 (147)
T ss_dssp SSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEE
T ss_pred CCCCCCcccccCCeEEEEECCeecchHHHHHHHHHh---cCCCCceEEEEEEeCccc-cchhHHHHhhhhhhcCcceEEE
Confidence 344444333445789999999999999999999865 222557899999999999 999999999998764 566788
Q ss_pred EEEecCCCC----ccchhhhhHhcHHHHHHhh---hCCCEEEEeCCCcchHHH-HHHHHHHHH
Q 008647 475 LAFSREGSQ----KEYVQHKMMDKAAQLWSLL---SKEGYLYVCGDAKGMARD-VHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~~~----k~yvq~~l~~~~~~l~~~~---~~~~~iyvCGp~~~M~~~-v~~~L~~i~ 529 (558)
.+.+++... +++++..+ +.+.+ ..+..+|+||| +.|++. +++.|.+++
T Consensus 83 ~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~~vyiCGP-~~m~~~~~~~~L~~~G 138 (147)
T d1umka2 83 YTLDRAPEAWDYGQGFVNEEM------IRDHLPPPEEEPLVLMCGP-PPMIQYACLPNLDHVG 138 (147)
T ss_dssp EEESSCCSSCSSEESSCCHHH------HHHHSCCGGGCCEEEEESC-HHHHHHTTHHHHHHHT
T ss_pred EEecccccCcccceeehHHHH------HHHhcCCCcCCcEEEEeCC-HHHHHHHHHHHHHHcC
Confidence 888876543 33443222 22222 34779999999 899975 677887764
|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Chondrus crispus [TaxId: 2769]
Probab=99.75 E-value=4.2e-19 Score=162.89 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=82.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC--chHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ--YEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~--y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+.+||+|||||+|++|++++.||+++.....++..|++++||||||||+. |++||.+++.|+++|+++||++|...
T Consensus 45 ~~d~li~g~sT~g~Ge~p~~~~~~~~~l~~~~~~~~~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~ 124 (173)
T d2fcra_ 45 DYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFS 124 (173)
T ss_dssp GCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGGCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCB
T ss_pred cCCeEEEEEeccCCCCCchhHHHHHHHHhhccccCCCCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEeccc
Confidence 4789999999999999999999999998643333345999999999999998 48999999999999999999999331
Q ss_pred -------------------cc-cCC--CC-CchhHHHHHHHHHHHHH
Q 008647 80 -------------------GL-GDD--DQ-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 -------------------~~-~d~--~~-~~~~~~~~W~~~l~~~l 103 (558)
|+ .|+ +. ..+..+++|+++|.+.+
T Consensus 125 ~~~gy~f~~s~a~~~~~f~gL~lD~dn~~~~t~~ri~~W~~~l~~e~ 171 (173)
T d2fcra_ 125 NPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp CGGGSCCSCCTTEETTEESSEEEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccChhhcCCccccccccccccchhhHHHHHHHHHHHHHHh
Confidence 11 122 22 45788999999887754
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=99.75 E-value=2.9e-19 Score=154.12 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=80.5
Q ss_pred CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEe
Q 008647 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 478 (558)
Q Consensus 399 ~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~S 478 (558)
.|.+++ ..+|+||||+|||||||+||++++... ...+++|+||+|+++ |++|.+++++++..... .++...+
T Consensus 1 dF~l~~-~~~~~v~IagGtGiaP~~s~~~~l~~~-----~~~~~~l~~~~r~~~-~~~~~~~l~~~~~~~~~-~~~~~~~ 72 (120)
T d2piaa2 1 EFPLDK-RAKSFILVAGGIGITPMLSMARQLRAE-----GLRSFRLYYLTRDPE-GTAFFDELTSDEWRSDV-KIHHDHG 72 (120)
T ss_dssp CSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHH-----CSSEEEEEEEESCGG-GCTTHHHHHSTTTTTTE-EEEECTT
T ss_pred CCCCCC-CCCCEEEEEecccHHHHHHHHHHHHHh-----cCCCeEEEEeeCCHH-HhhhhHHHHHHhhCCCe-EEeeecC
Confidence 488885 568999999999999999999998652 346799999999999 99999999998765433 2332222
Q ss_pred cCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHH
Q 008647 479 REGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLH 526 (558)
Q Consensus 479 r~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~ 526 (558)
+.. ....+...+. ...+++.+|+||| ++|+++|++.+.
T Consensus 73 ~~~-~~~~~~~~~~--------~~~~~~~~y~CGp-~~mi~~v~~~~~ 110 (120)
T d2piaa2 73 DPT-KAFDFWSVFE--------KSKPAQHVYCCGP-QALMDTVRDMTG 110 (120)
T ss_dssp CTT-SCCCHHHHHS--------SCCTTEEEEEESC-HHHHHHHHHHTT
T ss_pred CCc-ccccHHHHhc--------cCCCcCEEEEeCC-HHHHHHHHHHHc
Confidence 222 2222222221 1235789999999 999999998664
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Probab=99.74 E-value=6.8e-19 Score=156.75 Aligned_cols=126 Identities=16% Similarity=0.247 Sum_probs=84.8
Q ss_pred CCCcCCCC--CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE-EE
Q 008647 398 SNFKLPAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE-LI 474 (558)
Q Consensus 398 g~F~lp~~--~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~-~~ 474 (558)
|.|.++.. ..+++||||+|||||||+||++++.... ....++++|+||+|+.+ +.+|.+++..+.+...... .+
T Consensus 1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~--~~~~~~v~l~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T d2cnda2 1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQ--PEDHTEMHLVYANRTED-DILLRDELDRWAAEYPDRLKVW 77 (146)
T ss_dssp SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTT--TTCCCEEEEEEEESCGG-GCTTHHHHHHHHHHCTTTEEEE
T ss_pred CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhC--CccCceEEEEEeecccc-cchhHHHHhhHHHhCCCceeEE
Confidence 56777533 3579999999999999999999987621 12457899999999999 9999999999988765433 33
Q ss_pred EEEecCCC---CccchhhhhHhcHHHHHHhhh---CCCEEEEeCCCcchHHH-HHHHHHHHH
Q 008647 475 LAFSREGS---QKEYVQHKMMDKAAQLWSLLS---KEGYLYVCGDAKGMARD-VHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~~---~k~yvq~~l~~~~~~l~~~~~---~~~~iyvCGp~~~M~~~-v~~~L~~i~ 529 (558)
...+.... ...+....+. .+.+.+.+. +++.||+||| ++|++. |++.|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~--~~~l~~~~~~~~~~~~vyiCGp-~~m~~~av~~~L~~~G 136 (146)
T d2cnda2 78 YVIDQVKRPEEGWKYSVGFVT--EAVLREHVPEGGDDTLALACGP-PPMIQFAISPNLEKMK 136 (146)
T ss_dssp EEESCCSCGGGCCCSEESSCC--HHHHHHHSCCCSSSEEEEEECC-HHHHHTTTHHHHHTTT
T ss_pred EeeccccCcccccccccCccc--hHHHHHhcccCCCCcEEEEECC-HHHHHHHHHHHHHHcC
Confidence 33332221 1111122221 112222232 3568999999 899985 677777654
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Probab=99.72 E-value=4e-18 Score=156.92 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=76.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHH-----HHhcCCCCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYK-----WFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGA 74 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~-----~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~ 74 (558)
.++.+||++||||+|++|+|+..|++ ++.... ...|++++||||||||+.| ++||.+++.|+++|+++||+
T Consensus 46 ~~d~~i~~~sT~G~Ge~Pd~~~~f~~~~w~~~~~~~~--~~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~ 123 (179)
T d1yoba1 46 QYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIE--GLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAK 123 (179)
T ss_dssp TCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHT--TCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCE
T ss_pred CcCEEEEEecccCCCCCCchhHHHHHHHHHHHHhhcc--ccccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCe
Confidence 47899999999999999999887642 222211 1239999999999999985 88999999999999999999
Q ss_pred EeecC-------------------cc-cCCCC--C-chhHHHHHHHHHHHHH
Q 008647 75 RLVPL-------------------GL-GDDDQ--C-IEDDFTAWRELVWPEL 103 (558)
Q Consensus 75 ~i~~~-------------------~~-~d~~~--~-~~~~~~~W~~~l~~~l 103 (558)
+|... |. .|+.. + .++.++.|+++|++.+
T Consensus 124 ~iG~~~~~gy~f~~s~a~~~~~f~GL~lD~dnq~~~t~~ri~~W~~~l~~e~ 175 (179)
T d1yoba1 124 IVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQSGKTDERVAAWLAQIAPEF 175 (179)
T ss_dssp EECCBCCTTCCCSCCTTBSSSSBSSEEECTTTCGGGHHHHHHHHHHHHGGGG
T ss_pred EeeccCCCCcccccchhccCCceeeeeccccCchhhhHHHHHHHHHHHHHHh
Confidence 99432 11 23332 2 4788999998876543
|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=6.1e-18 Score=155.41 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=81.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+++.+||++||||+|++|+|++.||+.+.... |++++|||||+||+.| ++||.+++.++++|+++||+++...
T Consensus 45 ~~~~~i~~~sT~g~Ge~p~~~~~~~~~l~~~~-----l~~~~~avfglGd~~~~~~~F~~a~~~l~~~l~~~Ga~~iG~~ 119 (175)
T d1ag9a_ 45 AYDILLLGIPTWYYGEAQCDWDDFFPTLEEID-----FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHW 119 (175)
T ss_dssp TCSEEEEECCEETTTEECHHHHHHHHHHTTCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCE
T ss_pred cccEEEEEecccCCCCCchHHHHHHhhccccc-----cCCCcEEEEEccCCchhhhHHHHHHHHHHHHHHhcCCEEeccc
Confidence 57899999999999999999999999997755 8999999999999986 7899999999999999999998542
Q ss_pred c--------------------c-cCCCC---CchhHHHHHHHHHHHHHH
Q 008647 80 G--------------------L-GDDDQ---CIEDDFTAWRELVWPELD 104 (558)
Q Consensus 80 ~--------------------~-~d~~~---~~~~~~~~W~~~l~~~l~ 104 (558)
. . .|++. ..+..++.|+++|++.|.
T Consensus 120 ~~~gy~f~~s~a~~~~~~~~gL~~D~dn~~~~t~~ri~~W~~~l~~e~~ 168 (175)
T d1ag9a_ 120 PTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp ECTTCCCSCCSCEEETTEESSEEECTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcccccchhhccCCeeeeeeeccccchhHHHHHHHHHHHHHHHHhC
Confidence 1 1 12222 235678899998887664
|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Synechococcus elongatus PCC 7942 [TaxId: 1140]
Probab=99.70 E-value=5e-18 Score=155.12 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=81.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC--chHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ--YEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~--y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+++||+|||||+|++|+||+.||++|...+ +++++||+||+||+. |++||.++++|+++|+++||++|...
T Consensus 46 ~~d~li~g~sT~g~Ge~p~~~~~f~~~l~~~~-----l~~k~~a~fglGd~~~~y~~F~~a~~~l~~~l~~~Ga~~ig~~ 120 (169)
T d1czna_ 46 AYDYLIIGCPTWNVGELQSDWEGIYDDLDSVN-----FQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYW 120 (169)
T ss_dssp GCSEEEEECCEETTTEECHHHHHHGGGGGGSC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCE
T ss_pred ccCeEEEEecCCCCCCCcHHHHHHHhhhhccc-----CCCceEEEEEecCCcccchhhhhHHHHHHHHHHhCCCceecCc
Confidence 47899999999999999999999999998765 889999999999995 69999999999999999999999653
Q ss_pred cc--------------------cCCCC--C-chhHHHHHHHHHHHHH
Q 008647 80 GL--------------------GDDDQ--C-IEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 ~~--------------------~d~~~--~-~~~~~~~W~~~l~~~l 103 (558)
.. .|+.. + .+..++.|+++|++.+
T Consensus 121 ~~~~y~~~~s~a~~~~~f~GL~lD~d~~~~~t~~ri~~W~~~l~~e~ 167 (169)
T d1czna_ 121 PIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp ECTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHHHHT
T ss_pred cCCCcccccchhccCCeEEeeeccccCchhhhHHHHHHHHHHHHHHh
Confidence 22 13322 1 3677889999887654
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.69 E-value=4.3e-17 Score=143.04 Aligned_cols=121 Identities=23% Similarity=0.317 Sum_probs=103.5
Q ss_pred CCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCC
Q 008647 151 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 230 (558)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 230 (558)
..|+.++||.++|+++++|+..++.+.++||+|++++ .+.|+||+.|+|.|++..+
T Consensus 12 ~~y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~-~~~y~pGQ~v~v~~p~~~~----------------------- 67 (136)
T d1fnda1 12 NKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGEDK----------------------- 67 (136)
T ss_dssp CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBCT-----------------------
T ss_pred eeecCCCCeEEEEEeEEEccCCCCCceEEEEecccCC-CCcccCCCEEEEECCCccc-----------------------
Confidence 4578899999999999999998888999999999975 7999999999999976420
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHH
Q 008647 231 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 310 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d 310 (558)
++
T Consensus 68 -------------------------------------------------------------~~----------------- 69 (136)
T d1fnda1 68 -------------------------------------------------------------NG----------------- 69 (136)
T ss_dssp -------------------------------------------------------------TS-----------------
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred HHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCC---CCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCC
Q 008647 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGD 387 (558)
Q Consensus 311 ~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~---~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~ 387 (558)
.++.+|.|||||+|... .+.++|+|+.+.+.+..++.+.|+||+||++|++|
T Consensus 70 --------------------~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~G----- 124 (136)
T d1fnda1 70 --------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPG----- 124 (136)
T ss_dssp --------------------SBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCTT-----
T ss_pred --------------------ccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhccCCCc-----
Confidence 23467999999999753 36799999988888777778899999999999999
Q ss_pred ccEEEEEeeCCC
Q 008647 388 CSWAPIFIRPSN 399 (558)
Q Consensus 388 ~~~v~v~~p~g~ 399 (558)
|.|.+.+|+|.
T Consensus 125 -D~V~v~GP~Gk 135 (136)
T d1fnda1 125 -AEVKLTGPVGK 135 (136)
T ss_dssp -CEEEEEEEECS
T ss_pred -CEEEEeCCCCC
Confidence 99999999983
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Probab=99.66 E-value=1.3e-17 Score=150.38 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=87.0
Q ss_pred CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC--------ccEEEEEEe
Q 008647 407 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV--------ISELILAFS 478 (558)
Q Consensus 407 ~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~--------~~~~~~a~S 478 (558)
.+++||||+|||||||+||+++++... ..++++++||+|+.+ |.+|.++|..+..... .+++....+
T Consensus 7 ~~~lvlIagGtGIaP~~sil~~~~~~~----~~~~~~l~~g~r~~~-~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
T d1a8pa2 7 GKHLYMLSTGTGLAPFMSLIQDPEVYE----RFEKVVLIHGVRQVN-ELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVT 81 (158)
T ss_dssp CSEEEEEEEGGGGHHHHHHTTCHHHHH----HCSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEES
T ss_pred CCCEEEEEchhhHHHHHHHHHHHHHhC----CCCceeeeeccccHH-HHhhHHHHHHHHhhhhhhhhccccceEEEEecc
Confidence 579999999999999999999987632 457899999999999 9999999988766543 224455555
Q ss_pred cCCCC-ccchhhhhHhcH--HHHHH--hhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCC
Q 008647 479 REGSQ-KEYVQHKMMDKA--AQLWS--LLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVD 536 (558)
Q Consensus 479 r~~~~-k~yvq~~l~~~~--~~l~~--~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~ 536 (558)
+.... .+.......... +.+.. ....+..||+||| ++|+++|.++|.+++.+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCGp-~~m~~~v~~~L~~~G~~~~~~~ 143 (158)
T d1a8pa2 82 RESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGS-PSMLDESCEVLDGFGLKISPRM 143 (158)
T ss_dssp SSCCSSBSCHHHHHHSSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCSST
T ss_pred cccccccccccchhccchhhhhhhccccCcccceEEEECC-HHHHHHHHHHHHHcCCCccCCc
Confidence 55432 222222211111 11100 1124679999999 9999999999999887665443
|
| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavoprotein NrdI domain: Flavoprotein NrdI species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=3.1e-17 Score=143.54 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=68.8
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.+.+||||||||+|++|+++++||++|.+ ++|||||+||++| ++||.++++++++|....+.++ +
T Consensus 44 ~~~~ilitsT~G~Ge~P~~~~~F~~~l~~----------~~~aV~G~Gd~~y~~~Fc~a~~~i~~~~~~~~~~~~----E 109 (135)
T d1rlja_ 44 DTPFVLVTYTTNFGQVPASTQSFLEKYAH----------LLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKF----E 109 (135)
T ss_dssp CSCEEEEECCBGGGBCCHHHHHHHHHHGG----------GEEEEEEEECGGGGGGTTHHHHHHHHHHTCCEEEEE----E
T ss_pred ccceEEEecCCCCCCCCHHHHHHHHhccc----------cceEEEEeCCchHHHHHHHHHHHHHHHhCCCceEee----e
Confidence 34688999999999999999999998743 6899999999999 6999999999998843333222 1
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
........+.|.+|+++++..+..
T Consensus 110 ~~g~~~D~e~~~~~v~~~~~~~~~ 133 (135)
T d1rlja_ 110 LSGTSKDVELFTQEVERVVTKSSA 133 (135)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHc
Confidence 111112357888999988887654
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.65 E-value=4.2e-16 Score=136.51 Aligned_cols=123 Identities=24% Similarity=0.322 Sum_probs=101.6
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 232 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 232 (558)
|+.++||.|+|+++++||.++....++||+|++++..+.|.|||.++|+|+|.+.
T Consensus 7 ~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~------------------------- 61 (133)
T d2bmwa1 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK------------------------- 61 (133)
T ss_dssp BBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCT-------------------------
T ss_pred cCCCCCeEEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccc-------------------------
Confidence 6678999999999999999888889999999999878999999999999998520
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHH
Q 008647 233 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312 (558)
Q Consensus 233 ~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l 312 (558)
.+
T Consensus 62 -----------------------------------------------------------~~------------------- 63 (133)
T d2bmwa1 62 -----------------------------------------------------------NG------------------- 63 (133)
T ss_dssp -----------------------------------------------------------TS-------------------
T ss_pred -----------------------------------------------------------cc-------------------
Confidence 00
Q ss_pred HhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCC---CCeEEEEEEEEEccCC-CCCcccCcccHHhhhcCCCCCCCCc
Q 008647 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTP-TGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 313 ~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~---~~~i~l~v~vv~~~~~-~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
....+|.|||||+|... .+.++++|+.+.+... .+....|.||+||+++++|
T Consensus 64 ------------------~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~G------ 119 (133)
T d2bmwa1 64 ------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPG------ 119 (133)
T ss_dssp ------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTT------
T ss_pred ------------------cccceeeeeecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhhHhhCCCC------
Confidence 11357999999999653 3469999987754332 3456789999999999999
Q ss_pred cEEEEEeeCCCCcC
Q 008647 389 SWAPIFIRPSNFKL 402 (558)
Q Consensus 389 ~~v~v~~p~g~F~l 402 (558)
|.|.+.+|.|.|.|
T Consensus 120 D~v~v~GP~G~~fL 133 (133)
T d2bmwa1 120 SEVKITGPVGKEML 133 (133)
T ss_dssp CEEEEEEEECSSSC
T ss_pred CEEEEeCCccceeC
Confidence 99999999998865
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.54 E-value=1.9e-15 Score=136.69 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=76.0
Q ss_pred CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC-Ccc
Q 008647 407 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS-QKE 485 (558)
Q Consensus 407 ~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~-~k~ 485 (558)
..++||||+|||||||+||++++.+ ...+++++||+|+++ |.+|.+||+++... .+++....... .++
T Consensus 8 ~~kvllIAgG~GitPl~sm~~~l~~------~~~~v~l~~g~r~~~-~~~~~~el~~~~~~----~~~~~~~~~~~~~~g 76 (160)
T d1ep3b2 8 TDKILIIGGGIGVPPLYELAKQLEK------TGCQMTILLGFASEN-VKILENEFSNLKNV----TLKIATDDGSYGTKG 76 (160)
T ss_dssp TSEEEEEEEGGGSHHHHHHHHHHHH------HTCEEEEEEEESSGG-GCCCHHHHHTSTTE----EEEEEETTCSSSEES
T ss_pred CCEEEEEEeeeeHHHHHHHHHHHHh------ccCceEEEEecCCHH-HHHHHHHHHHhhCC----CccccccCccccccc
Confidence 4579999999999999999998664 246899999999999 99999999887542 23333322221 345
Q ss_pred chhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 486 YVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 486 yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
++.+.+.+. ......+|+||| .+|+++|.+.+.+.
T Consensus 77 ~v~~~~~~~-------~~~~~~vy~CGP-~~m~~~v~~~~~~~ 111 (160)
T d1ep3b2 77 HVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAKKYDQL 111 (160)
T ss_dssp CHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHHHTTTC
T ss_pred cHHHHHHhh-------ccccceeeeecc-chHHHHHHHHHHhc
Confidence 565543321 235689999999 89999998877654
|
| >d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]
Probab=99.49 E-value=1.4e-14 Score=132.11 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=80.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC--chHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ--YEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~--y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+.+||++||||.|++|++++.||..|.... ++++++|+||+||+. |++||.+++.++++|.++||+.+...
T Consensus 46 ~~d~~i~g~sT~g~G~~p~~~~~~~~~l~~~~-----l~~k~~a~fg~Gd~~~~~e~f~~a~~~l~~~l~~~g~~~ig~~ 120 (169)
T d1oboa_ 46 DYQYLIIGCPTLNIGELQSDWEGLYSELDDVD-----FNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYW 120 (169)
T ss_dssp GCSEEEEEEEEETTTEECHHHHHHHTTGGGCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCE
T ss_pred cCCEEEEEEecCCCCCCChhHHHhhhhhcccC-----CCCCceeEEeccCCcchhhhHhhhHHHHHHHHHhcCCcccccc
Confidence 47899999999999999999999999998765 899999999999995 59999999999999999999988431
Q ss_pred -------------------ccc-CCCC---CchhHHHHHHHHHHHHH
Q 008647 80 -------------------GLG-DDDQ---CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 -------------------~~~-d~~~---~~~~~~~~W~~~l~~~l 103 (558)
|.. |+.. -.++.++.|+++|++.+
T Consensus 121 ~~~g~~f~~s~~~~~~~fiGl~lD~d~~~e~t~eri~~Wv~~i~~e~ 167 (169)
T d1oboa_ 121 STDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp ECTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCccccccccccCCeEEecCcCccCcccccHHHHHHHHHHHHHHh
Confidence 111 3222 23677889999887754
|
| >d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Helicobacter pylori [TaxId: 210]
Probab=99.41 E-value=2e-14 Score=129.98 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=60.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.+||++||||+|++|+|++.||+.+.... |++++||||||||+.| .+||.+...+...+ .||+.+..
T Consensus 43 ~~d~li~~~sT~g~G~~p~~~~~~~~~l~~~~-----l~g~~~avfglGd~~~~~~~f~~a~~~~~~~~--~ga~~vg~ 114 (163)
T d1fuea_ 43 GFTKVILVAPTAGAGDLQTDWEDFLGTLEASD-----FANKTIGLVGLGDQDTYSETFAEGIFHIYEKA--KAGKVVGQ 114 (163)
T ss_dssp TCSEEEEEEEBCGGGCBCHHHHHHHTTCCTHH-----HHTSEEEEEEECCTTTTTBSTTCHHHHHHHHH--TTSEECCC
T ss_pred cCceEEEecccCCCCCCCHhHHHHHhhccccc-----CCCCeEEEEEecCcccccccchhhhHHHHHHh--cCCccccc
Confidence 57899999999999999999999998876543 8999999999999975 78999999987654 78887743
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=98.86 E-value=3.1e-09 Score=92.39 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=69.4
Q ss_pred CCcEEEEEeccCCCCCCCccH-HHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNA-ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~-~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||||.|.+|+++ ..|++.+.. . ++++++++||.|+..|.. +.+.++++|+++||+.+.+..
T Consensus 46 ~~d~ii~g~pT~~~g~~p~~~~~~~~~~~~~-~-----~~gk~~~~fgs~g~~~~~---a~~~l~~~l~~~G~~~v~~~~ 116 (137)
T d2fz5a1 46 SKDVILLGCPAMGSEELEDSVVEPFFTDLAP-K-----LKGKKVGLFGSYGWGSGE---WMDAWKQRTEDTGATVIGTAI 116 (137)
T ss_dssp TCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-G-----CSSCEEEEEEEESSCCSH---HHHHHHHHHHHTTCEEEEEEE
T ss_pred ccceEEEEEecccCCcCChhHHHHHHHHhcc-c-----cCCCeEEEEEecCCCcCH---HHHHHHHHHHHCCCEEeecee
Confidence 578999999999999999875 567777743 2 789999999999988744 568899999999999999888
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
..+...+ .+....|-+.|
T Consensus 117 ~~~~~~d-~~~~~e~g~~l 134 (137)
T d2fz5a1 117 VNEMPDN-APECKELGEAA 134 (137)
T ss_dssp EESSSSS-CTHHHHHHHHH
T ss_pred ecCCCCh-HHHHHHHHHHH
Confidence 7776543 34455665443
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.67 E-value=3.3e-08 Score=85.69 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=69.0
Q ss_pred CCcEEEEEeccCCCCCCCccH-HHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNA-ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~-~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||||.|.+|+++ ..|++.+.. . ++++++++||.... .||.+.+.++++|.++||+.+.+..
T Consensus 45 ~~~~~i~g~pt~~~g~~p~~~~~~~~~~~~~-~-----~~gk~~~~f~s~g~---~~~~~~~~~~~~l~~~G~~~v~~~~ 115 (138)
T d5nula_ 45 NEDILILGCSAMTDEVLEESEFEPFIEEIST-K-----ISGKKVALFGSYGW---GDGKWMRDFEERMNGYGCVVVETPL 115 (138)
T ss_dssp TCSEEEEEECCBTTTBCCTTTHHHHHHHHGG-G-----CTTCEEEEEEEESS---SCSHHHHHHHHHHHHTTCEECSCCE
T ss_pred cCCeEEEEEeccCCCCCChHHHHHHHHHhCc-c-----CCCCcEEEEEEecC---CCCHHHHHHHHHHHHCCCEEecCcE
Confidence 578999999999999998874 556555432 2 78899999986543 4688899999999999999999988
Q ss_pred ccCCCC-CchhHHHHHHHHH
Q 008647 81 LGDDDQ-CIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~-~~~~~~~~W~~~l 99 (558)
.++... +..+...+|.++|
T Consensus 116 ~~~~~p~e~~~~~~~~g~~l 135 (138)
T d5nula_ 116 IVQNEPDEAEQDCIEFGKKI 135 (138)
T ss_dssp EEESSCGGGHHHHHHHHHHH
T ss_pred EECCCCcHHHHHHHHHHHHH
Confidence 887665 3345566676554
|
| >d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=5.4e-09 Score=85.61 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=55.8
Q ss_pred CCCCCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEE
Q 008647 316 PSATPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP 392 (558)
Q Consensus 316 ~~~~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~ 392 (558)
|...+.+|||+.+.+|.. ..|+|||+|+|. ++.++++|+.+ ..|.+|+||+++++| |.|.
T Consensus 26 p~~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~--~~~~~~~vk~~---------~~G~~S~~l~~lk~G------D~v~ 88 (99)
T d1fdra1 26 PVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPD--NPDLEFYLVTV---------PDGKLSPRLAALKPG------DEVQ 88 (99)
T ss_dssp CCCCCCTTCEEEEEECC---CEEEEEECCSCTT--CSSEEEEEECC---------TTCSSHHHHHTCCTT------CEEE
T ss_pred CCCCCCCCcEEEeccCCCCCcEEEEEccCCCCC--CceeEEEEEEe---------cCcHHHHHHhhCCCC------CEEE
Confidence 445678899999875532 469999999986 47899999843 259999999999999 9999
Q ss_pred EEeeCC-CCcC
Q 008647 393 IFIRPS-NFKL 402 (558)
Q Consensus 393 v~~p~g-~F~l 402 (558)
|.+|.| .|.|
T Consensus 89 v~gP~~g~F~L 99 (99)
T d1fdra1 89 VVSEAAGFFVL 99 (99)
T ss_dssp EESSCBCCCSG
T ss_pred ECcCCCCEEEC
Confidence 999775 5543
|
| >d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=3.6e-09 Score=86.33 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 318 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
..+.+|||+.+.+|....|+|||+|+|.. ++.++|+|+... .|..|+||.+ +++| +.|.|.+|
T Consensus 28 ~~f~~GQ~v~l~~~~~~~r~ySias~p~~-~~~l~l~ir~~~---------~g~~s~~l~~~l~~G------~~v~v~gP 91 (97)
T d1qfja1 28 FSFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGASE---------INLYAKAVMDRILKD------HQIVVDIP 91 (97)
T ss_dssp CCCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHH------SEEEEEEE
T ss_pred CccCCCCEEEEEEcCCCcEEEEEEEcCCC-CcEEEEEEeEcc---------CCchhHhHhhcCCCC------CEEEEecc
Confidence 34578999999888888999999999975 689999998653 5999999976 9999 89999999
Q ss_pred CCCCcC
Q 008647 397 PSNFKL 402 (558)
Q Consensus 397 ~g~F~l 402 (558)
.|.|.|
T Consensus 92 ~G~~~l 97 (97)
T d1qfja1 92 HGEAWL 97 (97)
T ss_dssp ECSCCC
T ss_pred CCceEC
Confidence 997764
|
| >d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=98.52 E-value=1.2e-08 Score=85.34 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=57.1
Q ss_pred CCChhHHHHhhCCC-----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAPH-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
...+|||+.+.++. ...|+|||+|+|. ++.++|+|+.+. .++...|.+|+||++ +++| +.|.
T Consensus 34 ~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~--~~~~~~~v~~~~----~~~~~~G~~S~~l~~~l~~G------d~v~ 101 (111)
T d1cqxa2 34 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREG----GGPQPPGYVSNLLHDHVNVG------DQVK 101 (111)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCC----BTTBCCCHHHHHHHHHCCTT------CEEE
T ss_pred CCCCCCEEEEEeecCCCcceeeeeccccCCcc--CCCeEEEEEEec----CCCcccchhHHHHHhcCCCC------CEEE
Confidence 45789999886442 2579999999986 467999998442 223346999999985 9999 9999
Q ss_pred EEeeCCCCcC
Q 008647 393 IFIRPSNFKL 402 (558)
Q Consensus 393 v~~p~g~F~l 402 (558)
+.+|.|.|.|
T Consensus 102 v~gP~G~F~L 111 (111)
T d1cqxa2 102 LAAPYGSFHI 111 (111)
T ss_dssp ECCCBCSCSC
T ss_pred EEccCeEeEC
Confidence 9999999986
|
| >d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Azotobacter vinelandii [TaxId: 354]
Probab=98.50 E-value=2.3e-08 Score=81.71 Aligned_cols=66 Identities=14% Similarity=0.028 Sum_probs=53.7
Q ss_pred CCCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 318 ATPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
..+.+|||+.+.+|.. ..|+|||+|+|. ++.++++++.+ ..|.+|+||+++++| |+|.+.
T Consensus 29 ~~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~--~~~~~~~i~~~---------~~G~~S~~L~~l~~G------d~v~v~ 91 (99)
T d1a8pa1 29 LRFENGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKEG------DELMVS 91 (99)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEECC---------SSCSSHHHHTTCCTT------CEEEEE
T ss_pred CccCCCcEEEEeccCCCceeEeeccccCCCC--CCcEEEEEEEe---------CCCChhHHHHhCCCC------CEEEEC
Confidence 4567899999975543 359999999996 46888888733 259999999999999 899997
Q ss_pred -eeCCCC
Q 008647 395 -IRPSNF 400 (558)
Q Consensus 395 -~p~g~F 400 (558)
+|.|.|
T Consensus 92 ~gP~G~l 98 (99)
T d1a8pa1 92 RKPTGTL 98 (99)
T ss_dssp SCCBCSC
T ss_pred CCCceeE
Confidence 899976
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=2.7e-08 Score=87.46 Aligned_cols=91 Identities=13% Similarity=-0.107 Sum_probs=69.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.+||+++||+ |.+|+.+..|++.+.... ++++++++||. |..||.+++.++++|.++|++.+.+. .
T Consensus 57 ~~d~iiigspt~~-~~~~~~~~~~l~~~~~~~-----~~~k~~~~fgs----~g~~~~a~~~~~~~l~~~G~~~v~~~-~ 125 (148)
T d1vmea1 57 DSEALIFGVSTYE-AEIHPLMRFTLLEIIDKA-----NYEKPVLVFGV----HGWAPSAERTAGELLKETKFRILSFT-E 125 (148)
T ss_dssp TCSEEEEEECEET-TEECHHHHHHHHHHHHHC-----CCCCEEEEEEE----CCCCCCC-CCHHHHHHTSSCEEEEEE-E
T ss_pred HCCEeEEEecccC-CccCchHHHHHHHHhhcc-----cCCCEEEEEEc----CCCccchHHHHHHHHHHcCCcEEeeE-E
Confidence 4789999999997 777778899999887654 78999999995 66789999999999999999887554 3
Q ss_pred cCCCCCchhHHHHHHHHHHHHH
Q 008647 82 GDDDQCIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l 103 (558)
.......++.+++|.+.+-+.|
T Consensus 126 ~~~~~~de~~~~e~~~~~~k~l 147 (148)
T d1vmea1 126 IKGSNMDERKIEEAISLLKKEL 147 (148)
T ss_dssp ECSTTCCTHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHhc
Confidence 3333334667777776655443
|
| >d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=98.44 E-value=6.6e-08 Score=79.01 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 318 ATPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
..+.+|||+.+.+|.. ..|+|||+|+|. ++.++++|+.+ ..|.+|+||++ +++| ++|.+.+
T Consensus 32 ~~f~pGQ~v~l~i~g~~~~r~ys~~~~~~--~~~~~~~i~~~---------~~G~~s~~l~~~l~~G------d~v~v~g 94 (100)
T d1krha1 32 IHFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAG------DKMSFTG 94 (100)
T ss_dssp CCCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTT------CEEEEEE
T ss_pred CCCCCCEEEEEEECCcceeEEeeccCCCc--cCceEEEEEEe---------eCCchhhhhhccCCCC------CEEEEec
Confidence 3457999999987753 589999999986 47888888743 25999999976 9999 8999999
Q ss_pred eCCCCc
Q 008647 396 RPSNFK 401 (558)
Q Consensus 396 p~g~F~ 401 (558)
|.|.|.
T Consensus 95 P~G~Ff 100 (100)
T d1krha1 95 PFGSFY 100 (100)
T ss_dssp EECSCS
T ss_pred cccccC
Confidence 999874
|
| >d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Nitrate reductase core domain species: Corn (Zea mays) [TaxId: 4577]
Probab=98.40 E-value=3.4e-08 Score=82.83 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=60.4
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+++||++.+..+. ...|+||++|+|.. ++.++|+|+............+|.+|.||+++++| |.|.|++
T Consensus 32 ~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~~~~~~~ik~~~~~~~~~~~~gG~~s~~l~~l~~G------d~v~i~g 104 (114)
T d2cnda1 32 GLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVG------SYIDVKG 104 (114)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTT------CEEEEEE
T ss_pred CccceEEEEEEeecccceEEeeeccCCCCCC-CCEEEEEEEeccCCCccccccCchhHHHHhhCCCC------CEEEEEC
Confidence 35789999886442 24899999999976 68999999864322111223469999999999999 9999999
Q ss_pred eCCCCcCC
Q 008647 396 RPSNFKLP 403 (558)
Q Consensus 396 p~g~F~lp 403 (558)
|.|.|.+.
T Consensus 105 P~G~F~y~ 112 (114)
T d2cnda1 105 PLGHVEYT 112 (114)
T ss_dssp EECSEECC
T ss_pred CceeeEEC
Confidence 99999864
|
| >d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=98.38 E-value=7.8e-08 Score=79.05 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=53.1
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCc-ccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGV-CSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~-~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|. +|+||+ ++++| +.|.+++|
T Consensus 38 ~f~pGQ~v~v~~~~~~~R~YSl~s~p~~-~~~~~i~Vk~~---------~~g~~~S~~l~~~l~~G------d~v~v~~P 101 (103)
T d2piaa1 38 PFEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRD---------SNGRGGSISFIDDTSEG------DAVEVSLP 101 (103)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECC---------TTSCSHHHHHHHSCCTT------CEEEECCC
T ss_pred CCCCCceEEEEEecceeEEEEEecCCCC-CCEEEEEEEEE---------CCCccchHHHHhcCCCC------CEEEEeCC
Confidence 3578999999888778899999999965 68999999843 2465 599997 49999 89999988
Q ss_pred CC
Q 008647 397 PS 398 (558)
Q Consensus 397 ~g 398 (558)
.+
T Consensus 102 rn 103 (103)
T d2piaa1 102 RN 103 (103)
T ss_dssp BC
T ss_pred cC
Confidence 64
|
| >d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=98.34 E-value=1.1e-07 Score=78.96 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=54.6
Q ss_pred CCCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 318 ATPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
..+.+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+++ ..|.+|+||++ +++| +.|.+.+
T Consensus 42 ~~f~pGQ~v~l~~~g~~~~R~ySias~p~~-~~~~~~~i~~~---------~~G~~S~~l~~~l~~G------d~v~i~g 105 (109)
T d1tvca1 42 VKFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVG------QVLSVKG 105 (109)
T ss_dssp CSCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSS------SEEEEEE
T ss_pred ccCCCCcEEEEEECCccccccceeccCCcC-CceeEEEEEEe---------CCchHHHHHHhhCCCC------CEEEEeC
Confidence 3567899999976654 6899999999975 67899999843 26999999975 9999 8999999
Q ss_pred eCC
Q 008647 396 RPS 398 (558)
Q Consensus 396 p~g 398 (558)
|.|
T Consensus 106 P~G 108 (109)
T d1tvca1 106 PLG 108 (109)
T ss_dssp EEC
T ss_pred Ccc
Confidence 987
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=98.34 E-value=4.7e-07 Score=79.51 Aligned_cols=96 Identities=13% Similarity=-0.046 Sum_probs=78.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.+||.++||+ |.++..++.|++.+.... +.++.+++||. |..||.+.+.+++.|.++|++.+.+...
T Consensus 53 ~~d~vi~Gspt~~-~~~~~~~~~~l~~~~~~~-----~~~k~~~~fgs----~g~~~~a~~~~~~~l~~~g~~~v~~~~~ 122 (152)
T d1e5da1 53 DAGAVIVGSPTHN-NGILPYVAGTLQYIKGLR-----PQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVK 122 (152)
T ss_dssp TCSEEEEECCCBT-TBCCHHHHHHHHHHHHTC-----CCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEE
T ss_pred hCCEEEEeccccC-CccCchhHHHHHHhhccC-----CCCCEEEEEEe----eCCCCccHHHHHHHHHHCCCEEecCcEE
Confidence 4789999999995 778888999999988765 78999999995 4457899999999999999999987776
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHHHhh
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~~~~ 107 (558)
++... ...+....|.++|.++|++..
T Consensus 123 ~~~~p~~~~~~~~~e~g~~i~~~lk~k~ 150 (152)
T d1e5da1 123 VKNVPTHADYEQLKTMAQTIARALKAKL 150 (152)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 65544 234567789888888887643
|
| >d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=3.2e-07 Score=75.75 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCChhHHHHhhCCC-----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAPH-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+.++. ...|+|||+|.|. .+.++|+|+.+ ..|.+|+||+ ++++| +.|.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~--~~~~~i~vk~~---------~~G~~S~~l~~~l~~G------d~v~ 98 (107)
T d1gvha2 36 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVG------DVVK 98 (107)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTT------CEEE
T ss_pred CCCCCCEEEEEeeccccCceEEeeccccCCCC--CCceEEEEEEc---------CCcchhHHHHhcCCCC------CEEE
Confidence 45789999876452 2459999999886 57899999843 3699999998 59999 9999
Q ss_pred EEeeCCCCc
Q 008647 393 IFIRPSNFK 401 (558)
Q Consensus 393 v~~p~g~F~ 401 (558)
+.+|.|.|.
T Consensus 99 v~gP~G~Ff 107 (107)
T d1gvha2 99 LVAPAGDFF 107 (107)
T ss_dssp EEEEECSCC
T ss_pred EeCccccCC
Confidence 999999884
|
| >d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.20 E-value=1.6e-07 Score=76.75 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=52.7
Q ss_pred CChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEee
Q 008647 320 PPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 320 ~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p 396 (558)
..+|||+.+.+|.. ..|+|||+|.+.. ++.++|.+++.. .|..|.+|+++++| +.|.|.+|
T Consensus 33 ~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~-~~~i~~~i~~~~---------~g~~t~~l~~l~~G------d~v~v~GP 96 (101)
T d1ep3b1 33 DLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGD---------ETTGTYKLSKLESG------AKVDVMGP 96 (101)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCC---------TTSHHHHHHTCCTT------CEEEEEEE
T ss_pred cCCCceEEEEccCCccEeeccceeeeCCCC-CcEEEEEEeecC---------cchhhHHHHhCCCC------CEEEEecc
Confidence 45799999975643 4699999998865 688999887432 48889999999999 99999999
Q ss_pred CCC
Q 008647 397 PSN 399 (558)
Q Consensus 397 ~g~ 399 (558)
.|+
T Consensus 97 ~G~ 99 (101)
T d1ep3b1 97 LGN 99 (101)
T ss_dssp ESB
T ss_pred cCC
Confidence 993
|
| >d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=7.1e-07 Score=75.63 Aligned_cols=77 Identities=14% Similarity=-0.018 Sum_probs=56.9
Q ss_pred CCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+++||++.+.++.- ..|+||++|.|.. ++.++++|++...........+|..|.+|++|++| |.|.|++
T Consensus 42 ~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~g~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~G------D~v~v~g 114 (124)
T d1umka1 42 GLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIG------DTIEFRG 114 (124)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTT------CEEEEEE
T ss_pred ccceeeEEEEEecccceeEEEeeccCCcccC-CceEEEEEEecccccccccCCCcchHHHHhcCCCC------CEEEEEC
Confidence 357889888763322 4699999999976 68999999854311100112357888999999999 9999999
Q ss_pred eCCCCcC
Q 008647 396 RPSNFKL 402 (558)
Q Consensus 396 p~g~F~l 402 (558)
|.|.|..
T Consensus 115 P~G~F~y 121 (124)
T d1umka1 115 PSGLLVY 121 (124)
T ss_dssp EECSEEE
T ss_pred CeeeeEE
Confidence 9999864
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=98.01 E-value=2.4e-06 Score=74.51 Aligned_cols=91 Identities=9% Similarity=-0.104 Sum_probs=69.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc-c
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG-L 81 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~-~ 81 (558)
|+.+||.++|| .|.+|..++.|++.|.... ++++.+++||. |-.++.+.+.+.++|..+|++.+.+.+ .
T Consensus 54 ~d~ii~Gspt~-~g~~~~~~~~~l~~l~~~~-----~~~k~~~~fgs----~g~~g~a~~~l~~~l~~~g~~~v~~~~~~ 123 (149)
T d1ycga1 54 ARAVLVGSPTI-NNDILPVVSPLLDDLVGLR-----PKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEPGPT 123 (149)
T ss_dssp CSEEEEECCCB-TTBCCGGGHHHHHHHHHHC-----CSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSSCCE
T ss_pred CCeEEEEeecc-cCCCCHHHHHHHHHHhccc-----cCCCEEEEEec----ccCCchhHHHHHHHHHHCCCEEeccceEE
Confidence 78999999999 5888889999999998765 77899999984 434567899999999999999987643 3
Q ss_pred cCCCCC--chhHHHHHHHHHHHHH
Q 008647 82 GDDDQC--IEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~~--~~~~~~~W~~~l~~~l 103 (558)
+....+ ......+|.++|.+.|
T Consensus 124 ~~~~P~~~dl~~~~e~g~~ia~kl 147 (149)
T d1ycga1 124 VQWVPRGEDLQRCYELGRKIAARI 147 (149)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EcccCCHHHHHHHHHHHHHHHHHh
Confidence 322222 2345667776665554
|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Flavodoxin FldA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.99 E-value=0.0093 Score=52.96 Aligned_cols=72 Identities=8% Similarity=-0.190 Sum_probs=58.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
+++.+||.++|| .|.+|..++.|++.+..... ..++|+.+++||.+.....-...+...+...|..+|...+
T Consensus 49 ~~d~iiiGsPty-~g~~~~~~~~fld~~~~~~~--~~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vv 120 (184)
T d2arka1 49 WADGLAVGSPTN-MGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVF 120 (184)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEEC
T ss_pred hCcEEEEecCcc-ccccCHHHHHHHHHHHHHHH--HHhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEe
Confidence 478999999999 89999999999999865321 2389999999999777664445577889999999999765
|
| >d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Azobenzene reductase species: Bacillus subtilis [TaxId: 1423]
Probab=91.35 E-value=0.2 Score=43.00 Aligned_cols=97 Identities=5% Similarity=-0.027 Sum_probs=61.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec---
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP--- 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~--- 78 (558)
+.+.+||+++.| .|.+|..++.|.+|+... .+.++..++++.+-...-.+ .+...+...|..+|+.-+-.
T Consensus 63 ~aD~vIi~sP~Y-~~~~~~~lKn~iD~~~~~-----~~~~K~~~~~~~s~g~~gg~-~~~~~l~~~l~~l~~~v~~~~~~ 135 (171)
T d1nni1_ 63 KADAIVLLSPEY-HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGGKGGI-NALNNMRTVMRGVYANVIPKQLV 135 (171)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHCCHH-----HHTTCEEEEEEECCSTTTTH-HHHHHHHHHHHHTTCEECSCCEE
T ss_pred ccCceEEechHH-hcccchhHhHHHHHhccc-----ccCCCeEEEEEEeeCccchH-HHHHHHHHHHHHCCCEEECCeEE
Confidence 367899999999 799999999999998543 27788888887743322222 23455777888999975421
Q ss_pred --CcccCCCC-CchhHHHHHHHHHHHHHHH
Q 008647 79 --LGLGDDDQ-CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 79 --~~~~d~~~-~~~~~~~~W~~~l~~~l~~ 105 (558)
....|.+. ...+.+.+.++.+.+.|.+
T Consensus 136 ~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~ 165 (171)
T d1nni1_ 136 LDPVHIDVENATVAENIKESIKELVEELSM 165 (171)
T ss_dssp ECGGGEEGGGTEECHHHHHHHHHHHHHHHH
T ss_pred eccceeccCCCcCCHHHHHHHHHHHHHHHH
Confidence 11111111 2334555555555555544
|
| >d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Hypothetical protein SP1951 domain: Hypothetical protein SP1951 species: (Streptococcus pneumoniae) [TaxId: 1313]
Probab=89.93 E-value=0.36 Score=43.73 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=56.3
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCccc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 82 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~ 82 (558)
.+.+||++++| .|..|..++.|.+++.... ....|.|+..+++..+-..- ...+...|...|..+|++.+...+..
T Consensus 80 AD~iI~~sP~y-~~~~s~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~g--~~~~~~~l~~~l~~~G~~~v~~~~~~ 155 (232)
T d1sqsa_ 80 SDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESNG--SDNVSEYLRDIFSYMGGQILHQVSIT 155 (232)
T ss_dssp CSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSCC--SCCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCEEEEEeccc-cCcchHHHHHHHHHhHhhh-ccccccCCeEEEEEEccCCc--HHHHHHHHHHHHHHCCCEEeceeEEe
Confidence 57899999999 7889999999999997532 22348899999886533221 11255678888999999988655543
|
| >d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein Ylr011wp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.93 Score=39.18 Aligned_cols=65 Identities=14% Similarity=-0.059 Sum_probs=52.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+||+++.| .|.+|.-.+.|.+|+.. .+.++.++|++.|.+.= . .+...|...|..+|+..+
T Consensus 84 ~AD~iIi~tP~Y-~~~~~~~lK~~iD~~~~------~~~gKpv~ivs~g~~gg--~-~a~~~L~~~l~~~g~~vv 148 (185)
T d1t0ia_ 84 ALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG--S-KCNDQLQEVLHGLKMNVI 148 (185)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT--H-HHHHHHHHHHHHTTCEEE
T ss_pred hCCCeEEEEeee-cCCCcHHHHHHHHHhhH------HHCCCEEEEEEEcCcch--H-HHHHHHHHHHHHCCCEEc
Confidence 357899999999 68999999999999843 27899999998876531 1 245678899999999766
|
| >d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein PA1204 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.87 E-value=2.3 Score=36.13 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=54.3
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||+++.| .|..|.-.+.|.+|+.... ...|.|+.+++++.+-..+.... +...+...|..+||..+
T Consensus 67 aD~iii~sP~y-~~s~~~~lKn~iD~l~~~~--~~~~~gK~~~~i~~sgG~~~~~~-~~~~l~~~l~~~g~~~i 136 (174)
T d1rtta_ 67 ADALLFATPEY-NYSMAGVLKNAIDWASRPP--EQPFSGKPAAILGASAGRFGTAR-AQYHLRQTLVFLDVHPL 136 (174)
T ss_dssp CSEEEEECCEE-TTEECHHHHHHHHHHTCSS--SCTTTTCEEEEEEECSSTTTTHH-HHHHHHHHHHHHTCEEC
T ss_pred CCeEEEEccch-hccccHHHHHHHHHHhccc--ccccCCCEEEEEEECCCccchHH-HHHHHHHHHHHCCCEEc
Confidence 57899999999 7999999999999996532 24599999999987655443332 45567788888999765
|
| >d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: ACP phosphodiesterase AcpD species: Escherichia coli [TaxId: 562]
Probab=85.73 E-value=1.1 Score=39.10 Aligned_cols=102 Identities=8% Similarity=-0.031 Sum_probs=68.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCC
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQG 72 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lG 72 (558)
.+.+||+++.| .+.+|.-.+.|.+++..... +...+.+++..|+..+...| ..+..+...+...|.-+|
T Consensus 86 AD~iv~~sP~y-~~~~pa~lK~~IDr~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 164 (200)
T d2z98a1 86 HDVIVIAAPMY-NFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFLGFIG 164 (200)
T ss_dssp CSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEECCCSCEEEEEEECSSCCTTSTTCCHHHHHHHHHHHTT
T ss_pred cCcEEEEEccc-cccCCHHHHHHHHHhhcCCccccccCCCchhcccCceEEEEEecCCCccccchhhhHHHHHHHHHhCC
Confidence 57899999999 78899999999999964221 11246677787887766666 345556667778888899
Q ss_pred CeEeecCcccCCCCCchhHHHHHHHHHHHHHHHh
Q 008647 73 GARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 106 (558)
Q Consensus 73 a~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~ 106 (558)
++.+-.+ ..+.....++.-++++++..+.+.++
T Consensus 165 ~~~v~~i-~~~g~~~~~e~~~~~~~~A~~~~~~l 197 (200)
T d2z98a1 165 ITDVKFV-FAEGIAYGPEMAAKAQSDAKAAIDSI 197 (200)
T ss_dssp CCCEEEE-EECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEE-EEecccCCHHHHHHHHHHHHHHHHHH
Confidence 9766433 22222223445567766655555443
|
| >d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=83.55 E-value=1.1 Score=34.32 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=33.8
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeec
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 203 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 203 (558)
|.++|++.++++. ++++++|++++. ...|+||.++.|.-+
T Consensus 4 ~~~~v~~v~~lt~-----~v~~~~l~~~~~~~~~~f~pGQ~v~l~i~ 45 (100)
T d1krha1 4 FEGTLARVENLSD-----STITFDIQLDDGQPDIHFLAGQYVNVTLP 45 (100)
T ss_dssp EEEEEEEEEESSS-----SEEEEEEEECTTCCCCCCCTTCEEEEECT
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEcCCCCcCCCCCCCEEEEEEEC
Confidence 6799999999985 699999999863 378999999998643
|