Citrus Sinensis ID: 008679

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA
cccccccHHHHccccccccccccccccccEEEEccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEEccccccccccccccccccEEEEEcccccccEEEEEEEccccEEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHcccEEEEEEEccccccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEccEEEEccccccEEEEcccccccccccccccccccccccEEEEEcccccccccccccccEEcEEEEccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHccccccccccccccccccccccccccEEEcccccEEEEEEEEEEccccccEEEEEEEcccccEEEEEccEEEEcccccEEEEEEEEEEccccccccccccEEEEEEEEEcccEEEEcEEEEEEc
ccccccccHccccccccccccEEEcccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEEEccccccccccEcccccEEEEEEccccccccccEEEEccccEEEEEEEccccccccccEEEcccccccccccccHHHcccccccHHHcccEEEEEEcccccHHHHHHHHHHcccEEEEEEcccccccEEcccccccccEEccHHHHHHHHHHHHcccccEEEEEcccEEEccccccEEEEEcccccccccHHHccccccccccEEEEEcccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccEccccccccccccccccccccccccccccHHHcccccEEEEccHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEEccccEEEEEEccEEEEEEccEEEEEEEEEEEEcccccccccccEEEEEEEEEcccEEEEccEEEEEc
mdghgthtastvagrrvpnasafggfaegtasggaplARLAIYKAcwatpkaskaagntcFEADMLAAIDDAIRDGVHVLSIsigtnqpfafnrdgiAIGALNAVKHNILVACsagnsgpapsslsnlapwlitvgagsldrdfvgpvvlgtgmeiigktvtpynlkkmhplvyaadvvvpgvhqnetnqclpgsltpekvkgKIVLCmrgsgfklskgmevkraggvglilgnspangneysydahylpatavlYDDAIKIHEYIKSTNNPTAIIKQARTvlhtqpapfmanftsrgpnaldpyilkpditapglNILAAwseasspsklafdkRIVKYTIfsgtsmscPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMknnkalpitnadgsiatpfsfgsghfrptkaadpglvydasYEDYLLYLCShgfsftnpvfrcpnkppsalnlnypsiaipnlngTVIVKRTvtnvggsksvyffsakppmgvsvkanpsilffdhigqkksFTITVRLGsettrqgltkqyvfgwyrwtdglhlvrspmavsfa
mdghgthtastvagrrvpNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNEtnqclpgsltpekvkGKIVLCMRGsgfklskgmeVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRlgsettrqgltkqyVFGWYRWTDGLHLVRSPMAVSFA
MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVaaaaallkaIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA
**********************FGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG********LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVR********
MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSP****FDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVF*****PPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA
**********TVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA
*****THTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA
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MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
O65351757 Subtilisin-like protease no no 0.956 0.704 0.471 1e-133
O64495775 Subtilisin-like protease no no 0.967 0.695 0.410 1e-108
Q39547731 Cucumisin OS=Cucumis melo N/A no 0.922 0.703 0.373 6e-93
Q9LLL8749 Xylem serine proteinase 1 no no 0.935 0.695 0.384 5e-91
P29141806 Minor extracellular prote yes no 0.696 0.481 0.264 5e-25
Q02470 1902 PII-type proteinase OS=La N/A no 0.556 0.162 0.248 1e-08
P15293 1902 PII-type proteinase OS=La N/A no 0.570 0.167 0.243 4e-08
P16271 1902 PI-type proteinase OS=Lac N/A no 0.572 0.167 0.249 4e-08
P15292 1962 PIII-type proteinase OS=L yes no 0.588 0.167 0.247 1e-07
O31788442 Serine protease AprX OS=B no no 0.166 0.210 0.367 3e-06
>sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 Back     alignment and function desciption
 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/569 (47%), Positives = 355/569 (62%), Gaps = 36/569 (6%)

Query: 2   DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCF 61
           DGHGTHT+ST AG  V  AS  G +A GTA G AP AR+A+YK CW            CF
Sbjct: 210 DGHGTHTSSTAAGSVVEGASLLG-YASGTARGMAPRARVAVYKVCWL---------GGCF 259

Query: 62  EADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA 121
            +D+LAAID AI D V+VLS+S+G      + RDG+AIGA  A++  ILV+CSAGN+GP+
Sbjct: 260 SSDILAAIDKAIADNVNVLSMSLGGGMS-DYYRDGVAIGAFAAMERGILVSCSAGNAGPS 318

Query: 122 PSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNL--KKMHPLVYAADVV 179
            SSLSN+APW+ TVGAG+LDRDF    +LG G    G ++        K+ P +YA +  
Sbjct: 319 SSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNAS 378

Query: 180 VPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG 239
               +    N C+ G+L PEKVKGKIV+C RG   ++ KG  VK AGGVG+IL N+ ANG
Sbjct: 379 ----NATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANG 434

Query: 240 NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 299
            E   DAH LPAT V       I  Y+ +  NPTA I    TV+  +P+P +A F+SRGP
Sbjct: 435 EELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGP 494

Query: 300 NALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAAL 359
           N++ P ILKPD+ APG+NILAAW+ A+ P+ LA D R V++ I SGTSMSCPHV+  AAL
Sbjct: 495 NSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAAL 554

Query: 360 LKAIHPDWSSAAIRSALMTTAWMKNNKALPITN-ADGSIATPFSFGSGHFRPTKAADPGL 418
           LK++HP+WS AAIRSALMTTA+       P+ + A G  +TPF  G+GH  PT A +PGL
Sbjct: 555 LKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGL 614

Query: 419 VYDASYEDYLLYLCSHGFSFTNPVFRC---------PNKPPSALNLNYPSIAIPNLNGTV 469
           +YD + EDYL +LC+   ++T+P  R          P+K  S  +LNYPS A+ N++G  
Sbjct: 615 IYDLTTEDYLGFLCA--LNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAV-NVDGVG 671

Query: 470 IVK--RTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTR 527
             K  RTVT+VGG+ +          GV +   P++L F    +KKS+T+T  + S    
Sbjct: 672 AYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKP- 730

Query: 528 QGLTKQYVFGWYRWTDGLHLVRSPMAVSF 556
              +    FG   W+DG H+V SP+A+S+
Sbjct: 731 ---SGSNSFGSIEWSDGKHVVGSPVAISW 756
Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -
>sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 Back     alignment and function description
>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 Back     alignment and function description
>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 Back     alignment and function description
>sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 Back     alignment and function description
>sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 Back     alignment and function description
>sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 Back     alignment and function description
>sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 Back     alignment and function description
>sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 Back     alignment and function description
>sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
255562582 776 Xylem serine proteinase 1 precursor, put 1.0 0.717 0.707 0.0
224116492 775 predicted protein [Populus trichocarpa] 0.998 0.717 0.684 0.0
225462458 778 PREDICTED: subtilisin-like protease-like 0.996 0.713 0.666 0.0
359483572 777 PREDICTED: subtilisin-like protease-like 0.996 0.714 0.667 0.0
297791157 791 subtilase family protein [Arabidopsis ly 0.998 0.702 0.644 0.0
15242456 791 subtilase family protein [Arabidopsis th 0.998 0.702 0.645 0.0
147784535 860 hypothetical protein VITISV_036029 [Viti 0.976 0.632 0.662 0.0
449434276 791 PREDICTED: subtilisin-like protease-like 0.994 0.700 0.591 0.0
357136250 770 PREDICTED: subtilisin-like protease-like 0.994 0.719 0.580 0.0
297740588 740 unnamed protein product [Vitis vinifera] 0.928 0.698 0.616 0.0
>gi|255562582|ref|XP_002522297.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223538550|gb|EEF40155.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/557 (70%), Positives = 455/557 (81%)

Query: 1   MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTC 60
           MDGHGTHTASTVAG RV +A+A+GGFA GTASGGAPLA LAIYKACWA P   KA GNTC
Sbjct: 220 MDGHGTHTASTVAGNRVHDAAAYGGFARGTASGGAPLAHLAIYKACWALPNQEKANGNTC 279

Query: 61  FEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGP 120
           +EADMLAAIDDAI DGVHVLS+SIGT QP  + +DGIAIGA +A K NI+VAC+AGN+GP
Sbjct: 280 YEADMLAAIDDAIADGVHVLSMSIGTTQPVPYEQDGIAIGAFHAAKKNIVVACAAGNAGP 339

Query: 121 APSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVV 180
           APS+LSN APW+ITVGA ++DR F+GP+VLG G  I+G+TVTP  L KM+PLVYAAD+V 
Sbjct: 340 APSTLSNPAPWIITVGASTVDRAFLGPIVLGNGKTIMGQTVTPDKLDKMYPLVYAADMVA 399

Query: 181 PGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN 240
           PGV QNETNQCLP SL+P+KVKGKIVLCMRG+G ++ KGMEVKRAGGVG ILGNSPANGN
Sbjct: 400 PGVLQNETNQCLPNSLSPDKVKGKIVLCMRGAGMRVGKGMEVKRAGGVGYILGNSPANGN 459

Query: 241 EYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 300
           + S DAH LP TAV  D AI+I +YIKST NPTA I +A+TVLH  PAP MA F+SRGPN
Sbjct: 460 DVSVDAHVLPGTAVTSDQAIEILKYIKSTENPTATIGKAKTVLHYSPAPSMAAFSSRGPN 519

Query: 301 ALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALL 360
            +DP ILKPDI+APG+NILAAWS AS P+KL+ D R VK+ I SGTSM+CPHVAAAAALL
Sbjct: 520 VIDPNILKPDISAPGVNILAAWSGASPPTKLSTDNRTVKFNIDSGTSMACPHVAAAAALL 579

Query: 361 KAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVY 420
           KAIHP WSSAAIRSA+MTTAWMKNNK  PIT+  G  ATPF FGSG FRP KAADPGLVY
Sbjct: 580 KAIHPTWSSAAIRSAIMTTAWMKNNKGQPITDPSGEPATPFQFGSGQFRPAKAADPGLVY 639

Query: 421 DASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGG 480
           DA+Y+DY+ YLC++G    +P ++CP +   A NLNYPSIAIP LNGTV +KR+V NVG 
Sbjct: 640 DATYKDYVHYLCNYGLKDIDPKYKCPTELSPAYNLNYPSIAIPRLNGTVTIKRSVRNVGA 699

Query: 481 SKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYR 540
           S SVYFF+AKPPMG SVKA+PSIL F+H+ QKKSFTI +    E  ++    +Y FGWY 
Sbjct: 700 SNSVYFFTAKPPMGFSVKASPSILNFNHVNQKKSFTIRITANPEMAKKHQKDEYAFGWYT 759

Query: 541 WTDGLHLVRSPMAVSFA 557
           WTD  H VRSP+AVS A
Sbjct: 760 WTDSFHYVRSPIAVSLA 776

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116492|ref|XP_002317314.1| predicted protein [Populus trichocarpa] gi|222860379|gb|EEE97926.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462458|ref|XP_002269375.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483572|ref|XP_002269555.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297791157|ref|XP_002863463.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi|297309298|gb|EFH39722.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242456|ref|NP_199378.1| subtilase family protein [Arabidopsis thaliana] gi|9758669|dbj|BAB09208.1| subtilisin-like protease [Arabidopsis thaliana] gi|26451161|dbj|BAC42684.1| putative subtilisin-like protease [Arabidopsis thaliana] gi|28973549|gb|AAO64099.1| putative subtilisin [Arabidopsis thaliana] gi|332007897|gb|AED95280.1| subtilase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147784535|emb|CAN61728.1| hypothetical protein VITISV_036029 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434276|ref|XP_004134922.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] gi|449525046|ref|XP_004169531.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357136250|ref|XP_003569718.1| PREDICTED: subtilisin-like protease-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|297740588|emb|CBI30770.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2171938791 AT5G45650 "AT5G45650" [Arabido 0.998 0.702 0.633 7.9e-188
TAIR|locus:2172018754 AT5G45640 "AT5G45640" [Arabido 0.983 0.726 0.565 9.9e-158
UNIPROTKB|Q6H733799 P0026H03.20-1 "Putative subtil 0.967 0.674 0.474 3.6e-128
TAIR|locus:2168057778 SBT5.4 "AT5G59810" [Arabidopsi 0.973 0.696 0.466 1.2e-127
TAIR|locus:2158187757 ARA12 [Arabidopsis thaliana (t 0.956 0.704 0.467 7.2e-123
TAIR|locus:2050215772 AIR3 "AT2G04160" [Arabidopsis 0.973 0.702 0.445 1.5e-122
UNIPROTKB|Q75I27765 OSJNBa0091E13.30 "Putaive subt 0.797 0.580 0.477 2.6e-117
UNIPROTKB|Q8H4X8762 OJ1136_A10.113 "Putative subti 0.967 0.707 0.425 2.7e-116
TAIR|locus:2064696754 AT2G05920 "AT2G05920" [Arabido 0.953 0.704 0.445 6.4e-115
TAIR|locus:2131566764 SLP2 "AT4G34980" [Arabidopsis 0.962 0.701 0.441 1.5e-113
TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1821 (646.1 bits), Expect = 7.9e-188, P = 7.9e-188
 Identities = 354/559 (63%), Positives = 413/559 (73%)

Query:     2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCF 61
             DGHG+HTAST  GRRV  ASA GGFA+G+ASGGAPLARLAIYKACWA P A K  GN C 
Sbjct:   233 DGHGSHTASTAVGRRVLGASALGGFAKGSASGGAPLARLAIYKACWAKPNAEKVEGNICL 292

Query:    62 EADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA 121
             E DMLAAIDDAI DGVHV+SISIGT +PF F +DGIA+GAL+AVK NI+VA SAGNSGP 
Sbjct:   293 EEDMLAAIDDAIADGVHVISISIGTTEPFPFTQDGIAMGALHAVKRNIVVAASAGNSGPK 352

Query:   122 PSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVP 181
             P +LSNLAPW+ITVGA +LDR FVG +VLG G  I   ++T + + K  PLVYA++VVVP
Sbjct:   353 PGTLSNLAPWIITVGASTLDRAFVGGLVLGNGYTIKTDSITAFKMDKFAPLVYASNVVVP 412

Query:   182 GVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 241
             G+  NET+QCLP SL PE V GK+VLC+RG+G ++ KGMEVKRAGG G+ILGN  ANGNE
Sbjct:   413 GIALNETSQCLPNSLKPELVSGKVVLCLRGAGSRIGKGMEVKRAGGAGMILGNIAANGNE 472

Query:   242 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 301
                D+H++P   V      KI EYIK+  NP A IK  +TV   Q AP M  F+SRGPN 
Sbjct:   473 VPSDSHFVPTAGVTPTVVDKILEYIKTDKNPKAFIKPGKTVYKYQAAPSMTGFSSRGPNV 532

Query:   302 LDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXX 361
             +DP ILKPDITAPGL ILAAWS A SPSK++ D+R+  Y I+SGTSMSCPHV        
Sbjct:   533 VDPNILKPDITAPGLYILAAWSGADSPSKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLK 592

Query:   362 XIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYD 421
              IHP WSSAAIRSALMTTAWM N+K  PI +  G  A PF+ GSGHFRPTKAADPGLVYD
Sbjct:   593 AIHPKWSSAAIRSALMTTAWMTNDKKKPIQDTTGLPANPFALGSGHFRPTKAADPGLVYD 652

Query:   422 ASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVG-- 479
             ASY  YLLY CS   +  +P F+CP+K P   N NYPSIA+PNL  TV VKRTVTNVG  
Sbjct:   653 ASYRAYLLYGCSVNITNIDPTFKCPSKIPPGYNHNYPSIAVPNLKKTVTVKRTVTNVGTG 712

Query:   480 GSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGW 538
              S S Y FS KPP G+SVKA P+IL F+ IGQK+ F I ++ L ++        QY FGW
Sbjct:   713 NSTSTYLFSVKPPSGISVKAIPNILSFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGW 772

Query:   539 YRWTDGLHLVRSPMAVSFA 557
             + WTD +H+VRSP+AVS A
Sbjct:   773 FSWTDKVHVVRSPIAVSLA 791
GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IBA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IBA
GO:0042802 "identical protein binding" evidence=IEA
GO:0043086 "negative regulation of catalytic activity" evidence=IEA
TAIR|locus:2172018 AT5G45640 "AT5G45640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.21LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XI000523
hypothetical protein (775 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
cd04852307 cd04852, Peptidases_S8_3, Peptidase S8 family doma 2e-59
cd02120126 cd02120, PA_subtilisin_like, PA_subtilisin_like: P 3e-34
cd04852307 cd04852, Peptidases_S8_3, Peptidase S8 family doma 4e-32
cd07474295 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid 1e-27
cd07474295 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid 1e-18
cd07487264 cd07487, Peptidases_S8_1, Peptidase S8 family doma 7e-17
cd07490254 cd07490, Peptidases_S8_6, Peptidase S8 family doma 2e-15
pfam00082277 pfam00082, Peptidase_S8, Subtilase family 3e-14
cd07489312 cd07489, Peptidases_S8_5, Peptidase S8 family doma 5e-14
cd07477229 cd07477, Peptidases_S8_Subtilisin_subset, Peptidas 2e-13
cd04842293 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 5e-13
cd00306241 cd00306, Peptidases_S8_S53, Peptidase domain in th 2e-12
cd07481264 cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep 2e-12
cd07487264 cd07487, Peptidases_S8_1, Peptidase S8 family doma 3e-12
cd07473259 cd07473, Peptidases_S8_Subtilisin_like, Peptidase 4e-12
cd00306241 cd00306, Peptidases_S8_S53, Peptidase domain in th 1e-11
cd04077255 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep 1e-11
cd07475346 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 1e-11
cd07478455 cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam 5e-11
cd07477229 cd07477, Peptidases_S8_Subtilisin_subset, Peptidas 4e-10
cd07493261 cd07493, Peptidases_S8_9, Peptidase S8 family doma 4e-10
pfam0222596 pfam02225, PA, PA domain 2e-09
cd07484260 cd07484, Peptidases_S8_Thermitase_like, Peptidase 3e-09
pfam00082277 pfam00082, Peptidase_S8, Subtilase family 1e-08
cd07475346 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 2e-08
cd04848267 cd04848, Peptidases_S8_Autotransporter_serine_prot 2e-08
cd07473259 cd07473, Peptidases_S8_Subtilisin_like, Peptidase 4e-08
cd07490254 cd07490, Peptidases_S8_6, Peptidase S8 family doma 6e-07
cd07489312 cd07489, Peptidases_S8_5, Peptidase S8 family doma 1e-06
cd05562275 cd05562, Peptidases_S53_like, Peptidase domain in 1e-06
cd04848267 cd04848, Peptidases_S8_Autotransporter_serine_prot 2e-06
cd07496285 cd07496, Peptidases_S8_13, Peptidase S8 family dom 2e-06
TIGR03921350 TIGR03921, T7SS_mycosin, type VII secretion-associ 6e-06
cd07480297 cd07480, Peptidases_S8_12, Peptidase S8 family dom 3e-05
TIGR03921350 TIGR03921, T7SS_mycosin, type VII secretion-associ 6e-05
cd07482294 cd07482, Peptidases_S8_Lantibiotic_specific_protea 7e-05
COG1404508 COG1404, AprE, Subtilisin-like serine proteases [P 7e-05
cd07483291 cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti 8e-05
cd07476267 cd07476, Peptidases_S8_thiazoline_oxidase_subtilis 8e-05
cd04077255 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep 1e-04
COG1404508 COG1404, AprE, Subtilisin-like serine proteases [P 2e-04
cd05561239 cd05561, Peptidases_S8_4, Peptidase S8 family doma 3e-04
cd07498242 cd07498, Peptidases_S8_15, Peptidase S8 family dom 3e-04
cd04842293 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 5e-04
PTZ00262639 PTZ00262, PTZ00262, subtilisin-like protease; Prov 6e-04
cd07493261 cd07493, Peptidases_S8_9, Peptidase S8 family doma 7e-04
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 7e-04
cd07485273 cd07485, Peptidases_S8_Fervidolysin_like, Peptidas 0.001
cd04857412 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ 0.001
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 0.001
cd07480297 cd07480, Peptidases_S8_12, Peptidase S8 family dom 0.002
cd04847291 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas 0.002
>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 Back     alignment and domain information 
 Score =  199 bits (508), Expect = 2e-59
 Identities = 82/148 (55%), Positives = 94/148 (63%), Gaps = 10/148 (6%)

Query: 2   DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCF 61
           DGHGTHTAST AG  V NAS  GGFA GTASG AP AR+A+YK CW            CF
Sbjct: 108 DGHGTHTASTAAGNVVVNAS-VGGFAFGTASGVAPRARIAVYKVCWP--------DGGCF 158

Query: 62  EADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA 121
            +D+LAAID AI DGV V+S SIG   P     D IAI  L+AV+  I VA SAGNSGP 
Sbjct: 159 GSDILAAIDQAIADGVDVISYSIGGGSPD-PYEDPIAIAFLHAVEAGIFVAASAGNSGPG 217

Query: 122 PSSLSNLAPWLITVGAGSLDRDFVGPVV 149
            S++ N+APW+ TV A +L  D   P V
Sbjct: 218 ASTVPNVAPWVTTVAASTLKPDIAAPGV 245

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307
>gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 Back     alignment and domain information
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins Back     alignment and domain information
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins Back     alignment and domain information
>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 Back     alignment and domain information
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 Back     alignment and domain information
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family Back     alignment and domain information
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 Back     alignment and domain information
>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins Back     alignment and domain information
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases Back     alignment and domain information
>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families Back     alignment and domain information
>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins Back     alignment and domain information
>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 Back     alignment and domain information
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins Back     alignment and domain information
>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families Back     alignment and domain information
>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins Back     alignment and domain information
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases Back     alignment and domain information
>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins Back     alignment and domain information
>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins Back     alignment and domain information
>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins Back     alignment and domain information
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family Back     alignment and domain information
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases Back     alignment and domain information
>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases Back     alignment and domain information
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins Back     alignment and domain information
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 Back     alignment and domain information
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 Back     alignment and domain information
>gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family Back     alignment and domain information
>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases Back     alignment and domain information
>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 Back     alignment and domain information
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin Back     alignment and domain information
>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 Back     alignment and domain information
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin Back     alignment and domain information
>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases Back     alignment and domain information
>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins Back     alignment and domain information
>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases Back     alignment and domain information
>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins Back     alignment and domain information
>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 Back     alignment and domain information
>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 Back     alignment and domain information
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases Back     alignment and domain information
>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional Back     alignment and domain information
>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 Back     alignment and domain information
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin Back     alignment and domain information
>gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 Back     alignment and domain information
>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
cd04857412 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid 100.0
cd05562275 Peptidases_S53_like Peptidase domain in the S53 fa 100.0
cd07497311 Peptidases_S8_14 Peptidase S8 family domain, uncha 100.0
cd07478455 Peptidases_S8_CspA-like Peptidase S8 family domain 100.0
PTZ00262639 subtilisin-like protease; Provisional 100.0
cd07479255 Peptidases_S8_SKI-1_like Peptidase S8 family domai 100.0
cd07475346 Peptidases_S8_C5a_Peptidase Peptidase S8 family do 100.0
cd05561239 Peptidases_S8_4 Peptidase S8 family domain, unchar 100.0
cd07474295 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam 100.0
cd07489312 Peptidases_S8_5 Peptidase S8 family domain, unchar 100.0
cd07476267 Peptidases_S8_thiazoline_oxidase_subtilisin-like_p 100.0
cd07493261 Peptidases_S8_9 Peptidase S8 family domain, unchar 100.0
cd04852307 Peptidases_S8_3 Peptidase S8 family domain, unchar 100.0
cd07483291 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa 100.0
cd04847291 Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil 100.0
cd07487264 Peptidases_S8_1 Peptidase S8 family domain, unchar 100.0
cd07481264 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 100.0
cd07498242 Peptidases_S8_15 Peptidase S8 family domain, uncha 100.0
cd07490254 Peptidases_S8_6 Peptidase S8 family domain, unchar 100.0
cd07496285 Peptidases_S8_13 Peptidase S8 family domain, uncha 100.0
cd07485273 Peptidases_S8_Fervidolysin_like Peptidase S8 famil 100.0
PF00082282 Peptidase_S8: Subtilase family This is family S8 i 100.0
KOG1114 1304 consensus Tripeptidyl peptidase II [Posttranslatio 100.0
cd07477229 Peptidases_S8_Subtilisin_subset Peptidase S8 famil 100.0
cd07484260 Peptidases_S8_Thermitase_like Peptidase S8 family 100.0
cd07473259 Peptidases_S8_Subtilisin_like Peptidase S8 family 100.0
cd07494298 Peptidases_S8_10 Peptidase S8 family domain, uncha 100.0
cd04842293 Peptidases_S8_Kp43_protease Peptidase S8 family do 100.0
cd04077255 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 100.0
cd07482294 Peptidases_S8_Lantibiotic_specific_protease Peptid 100.0
cd04843277 Peptidases_S8_11 Peptidase S8 family domain, uncha 100.0
cd07480297 Peptidases_S8_12 Peptidase S8 family domain, uncha 100.0
cd07492222 Peptidases_S8_8 Peptidase S8 family domain, unchar 100.0
cd07491247 Peptidases_S8_7 Peptidase S8 family domain, unchar 100.0
cd07488247 Peptidases_S8_2 Peptidase S8 family domain, unchar 100.0
cd04848267 Peptidases_S8_Autotransporter_serine_protease_like 100.0
KOG1153501 consensus Subtilisin-related protease/Vacuolar pro 100.0
cd04059297 Peptidases_S8_Protein_convertases_Kexins_Furin-lik 99.97
KOG4266 1033 consensus Subtilisin kexin isozyme-1/site 1 protea 99.96
cd00306241 Peptidases_S8_S53 Peptidase domain in the S8 and S 99.95
COG1404508 AprE Subtilisin-like serine proteases [Posttransla 99.83
cd04056361 Peptidases_S53 Peptidase domain in the S53 family. 99.74
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.48
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.44
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.09
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.06
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.06
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.04
KOG3526629 consensus Subtilisin-like proprotein convertase [P 99.02
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 98.98
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 98.98
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 98.97
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 98.96
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 98.92
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 98.89
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 98.89
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 98.87
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 98.86
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 98.83
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 98.76
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 98.73
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 98.66
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 98.08
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 97.79
KOG2442541 consensus Uncharacterized conserved protein, conta 97.55
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 97.31
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 97.23
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 97.18
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 97.16
COG4934 1174 Predicted protease [Posttranslational modification 97.14
PF14874102 PapD-like: Flagellar-associated PapD-like 96.65
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 96.44
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 96.39
KOG3920193 consensus Uncharacterized conserved protein, conta 96.23
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 95.67
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 94.5
KOG3525431 consensus Subtilisin-like proprotein convertase [P 93.7
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 93.55
PF06030121 DUF916: Bacterial protein of unknown function (DUF 89.33
COG1470513 Predicted membrane protein [Function unknown] 88.56
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 82.83
TIGR02745434 ccoG_rdxA_fixG cytochrome c oxidase accessory prot 81.34
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II Back     alignment and domain information 
Probab=100.00  E-value=2.8e-42  Score=356.84  Aligned_cols=220  Identities=26%  Similarity=0.264  Sum_probs=165.1

Q ss_pred             CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679            2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS   81 (557)
Q Consensus         2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn   81 (557)
                      +||||||||||||+.         .....+.||||+|+|+.+|+++....      ..+....+++||++|++.|+||||
T Consensus       185 ~gHGThVAGIIAg~~---------~~~~~~~GVAP~A~I~svkv~d~~~g------s~~t~~~l~~ai~~ai~~gadVIN  249 (412)
T cd04857         185 GAHGTHVAGIAAAHF---------PEEPERNGVAPGAQIVSIKIGDTRLG------SMETGTALVRAMIAAIETKCDLIN  249 (412)
T ss_pred             CCCHHHHHHHHhCCC---------CCCCceEEecCCCeEEEEEeccCCCC------CccchHHHHHHHHHHHHcCCCEEE
Confidence            589999999999983         22334689999999999999865431      123456799999999999999999


Q ss_pred             EecCCCCCCCCCcchHHHHHH-HHHhCCcEEEEecCCCCCCCCCCCCC---CCceEEecccccCcceeeeEEeCCCcEEE
Q 008679           82 ISIGTNQPFAFNRDGIAIGAL-NAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGMEII  157 (557)
Q Consensus        82 ~SlG~~~~~~~~~~~~~~a~~-~a~~~Gv~vV~AAGN~G~~~~~~~~~---ap~vitVga~~~~~~~~~~~~~~~~~~~~  157 (557)
                      ||||........ ..+..++. .+.++|+++|+||||+|+...++..+   ++.||+|||............+       
T Consensus       250 ~SlG~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~-------  321 (412)
T cd04857         250 MSYGEATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL-------  321 (412)
T ss_pred             ecCCcCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-------
Confidence            999984321111 22333444 35579999999999999877766543   5799999985332110000000       


Q ss_pred             eeeeccCCCCceeeeEeecccccCCcCCCCCCCcCCCCCCCCCccceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCC
Q 008679          158 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA  237 (557)
Q Consensus       158 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~  237 (557)
                                                                                                      
T Consensus       322 --------------------------------------------------------------------------------  321 (412)
T cd04857         322 --------------------------------------------------------------------------------  321 (412)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCc
Q 008679          238 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN  317 (557)
Q Consensus       238 ~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~  317 (557)
                                                                    .....+.++.||||||+.+  +.+||||+|||+.
T Consensus       322 ----------------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~  353 (412)
T cd04857         322 ----------------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGA  353 (412)
T ss_pred             ----------------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCc
Confidence                                                          0011356889999999986  9999999999999


Q ss_pred             EEecccCCCCCCccccCccccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHcccccc
Q 008679          318 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMK  383 (557)
Q Consensus       318 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~  383 (557)
                      |++.-...           ...|..|+|||||||||||++|||++    .+|+|+|.+||++|++||+++
T Consensus       354 I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~  412 (412)
T cd04857         354 IASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL  412 (412)
T ss_pred             EEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence            98752211           15789999999999999999999975    478999999999999999864

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family Back     alignment and domain information
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 Back     alignment and domain information
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins Back     alignment and domain information
>PTZ00262 subtilisin-like protease; Provisional Back     alignment and domain information
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins Back     alignment and domain information
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases Back     alignment and domain information
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 Back     alignment and domain information
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins Back     alignment and domain information
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 Back     alignment and domain information
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases Back     alignment and domain information
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 Back     alignment and domain information
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 Back     alignment and domain information
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins Back     alignment and domain information
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins Back     alignment and domain information
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 Back     alignment and domain information
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins Back     alignment and domain information
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 Back     alignment and domain information
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 Back     alignment and domain information
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 Back     alignment and domain information
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin Back     alignment and domain information
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification Back     alignment and domain information
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins Back     alignment and domain information
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins Back     alignment and domain information
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins Back     alignment and domain information
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 Back     alignment and domain information
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases Back     alignment and domain information
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins Back     alignment and domain information
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases Back     alignment and domain information
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 Back     alignment and domain information
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 Back     alignment and domain information
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 Back     alignment and domain information
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 Back     alignment and domain information
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 Back     alignment and domain information
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases Back     alignment and domain information
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases Back     alignment and domain information
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families Back     alignment and domain information
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04056 Peptidases_S53 Peptidase domain in the S53 family Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3vta_A621 Crystal Structure Of Cucumisin, A Subtilisin-Like E 3e-92
3i6s_A649 Crystal Structure Of The Plant Subtilisin-Like Prot 6e-73
3afg_A539 Crystal Structure Of Pron-Tk-Sp From Thermococcus K 4e-07
3eif_A 936 1.9 Angstrom Crystal Structure Of The Active Form O 5e-05
2sni_E275 Structural Comparison Of Two Serine Proteinase-Prot 3e-04
2sbt_A275 A Comparison Of The Three-Dimensional Structures Of 3e-04
2sic_E275 Refined Crystal Structure Of The Complex Of Subtili 4e-04
1s02_A275 Effects Of Engineered Salt Bridges On The Stability 4e-04
1yjb_A275 Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit 4e-04
1lw6_E281 Crystal Structure Of The Complex Of Subtilisin Bpn' 4e-04
1sbi_A275 Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, 4e-04
1sub_A275 Calcium-Independent Subtilisin By Design Length = 2 5e-04
1a2q_A275 Subtilisin Bpn' Mutant 7186 Length = 275 5e-04
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 Back     alignment and structure 
Iteration: 1

 Score =  335 bits (860), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 210/567 (37%), Positives = 312/567 (55%), Gaps = 53/567 (9%)
Query: 2   DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCF 61
           +GHGTHTAST AG  V  A+ +G    GTA GG PLAR+A YK CW          + C 
Sbjct: 92  NGHGTHTASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCW---------NDGCS 141
Query: 62  EADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA 121
           + D+LAA DDAI DGV ++S+S+G   P  +  D IAIG+ +AV+  IL + SAGN GP 
Sbjct: 142 DTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPN 201
Query: 122 PSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVP 181
             + ++L+PWL++V A ++DR FV  V +G G    G ++  ++  + +PLV   D+   
Sbjct: 202 FFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNT 260
Query: 182 GVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAGGVGLILGNSPANGN 240
           G  ++ +  C   S+ P  +KGKIV+C    G  +  K ++    G  G+++    +N  
Sbjct: 261 GFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLD----GAAGVLM---TSNTR 313
Query: 241 EYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 300
           +Y+ D++ LP++ +  +D +    YI S  +P A I ++ T+L+   AP + +F+SRGPN
Sbjct: 314 DYA-DSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPN 371
Query: 301 ALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXX 360
                ++KPDI+ PG+ ILAAW   +    +   +R   + I SGTSMSCPH+       
Sbjct: 372 RATKDVIKPDISGPGVEILAAWPSVAPVGGI---RRNTLFNIISGTSMSCPHITGIATYV 428
Query: 361 XXIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVY 420
              +P WS AAI+SALMTTA   N +  P           F++GSGH  P KA  PGLVY
Sbjct: 429 KTYNPTWSPAAIKSALMTTASPMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVY 480
Query: 421 DASYEDYLLYLCSHGFSFTNPVFRCPNKPPSAL--------NLNYPSIAI---PNLNGTV 469
           DA+  DY+ +LC  G++ T  V R      +          +LNYPS  +   P+     
Sbjct: 481 DANESDYVKFLCGQGYN-TQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQ 539
Query: 470 IVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQG 529
              RT+T+V    S Y      P G+++  NP++L F+ +G +KSFT+TVR        G
Sbjct: 540 YFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR--------G 591
Query: 530 LTKQYVF-GWYRWTDGLHLVRSPMAVS 555
             K +V      W+DG+H VRSP+ ++
Sbjct: 592 SIKGFVVSASLVWSDGVHYVRSPITIT 618
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 Back     alignment and structure
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 Back     alignment and structure
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 Back     alignment and structure
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 Back     alignment and structure
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 Back     alignment and structure
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 Back     alignment and structure
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 Back     alignment and structure
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 Back     alignment and structure
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 Back     alignment and structure
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 Back     alignment and structure
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 Back     alignment and structure
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 0.0
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 1e-179
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 1e-127
3afg_A539 Subtilisin-like serine protease; propeptide, therm 1e-21
3afg_A539 Subtilisin-like serine protease; propeptide, therm 2e-12
3lxu_X 1354 Tripeptidyl-peptidase 2; spindle complex, aminopep 6e-21
3lxu_X 1354 Tripeptidyl-peptidase 2; spindle complex, aminopep 1e-16
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 7e-21
2ixt_A310 36KDA protease; serine protease, sphericase, subti 2e-20
2ixt_A310 36KDA protease; serine protease, sphericase, subti 7e-11
1to2_E281 Subtilisin BPN'; serine protease, hydrolase; HET: 5e-19
1to2_E281 Subtilisin BPN'; serine protease, hydrolase; HET: 4e-13
1r0r_E274 Subtilisin carlsberg; high resolution, serine prot 7e-19
1r0r_E274 Subtilisin carlsberg; high resolution, serine prot 5e-13
1gci_A269 Subtilisin; hydrolase, serine protease; 0.78A {Bac 1e-18
1gci_A269 Subtilisin; hydrolase, serine protease; 0.78A {Bac 2e-11
1r6v_A671 Subtilisin-like serine protease; sandwich domain, 2e-16
1r6v_A671 Subtilisin-like serine protease; sandwich domain, 9e-11
2iy9_A347 SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col 3e-16
2iy9_A347 SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col 4e-08
1wmd_A434 Protease; alpha-beta hydrolase fold, jelly-roll be 4e-16
1wmd_A434 Protease; alpha-beta hydrolase fold, jelly-roll be 2e-11
2x8j_A327 Intracellular subtilisin protease; hydrolase, seri 2e-15
2x8j_A327 Intracellular subtilisin protease; hydrolase, seri 4e-10
4aks_A360 PATG, thiazoline oxidase/subtilisin-like protease; 6e-15
4aks_A360 PATG, thiazoline oxidase/subtilisin-like protease; 8e-12
1thm_A279 Thermitase; hydrolase(serine protease); 1.37A {The 4e-14
1thm_A279 Thermitase; hydrolase(serine protease); 1.37A {The 4e-11
3t41_A471 Epidermin leader peptide processing serine protea; 4e-14
3t41_A471 Epidermin leader peptide processing serine protea; 1e-09
1dbi_A280 AK.1 serine protease; hydrolase; 1.80A {Bacillus S 8e-14
1dbi_A280 AK.1 serine protease; hydrolase; 1.80A {Bacillus S 3e-11
2qtw_B 546 Proprotein convertase subtilisin/kexin type 9; cor 8e-14
2qtw_B546 Proprotein convertase subtilisin/kexin type 9; cor 2e-05
2b6n_A278 Proteinase K; S binding, substrate specificity, pr 1e-13
2b6n_A278 Proteinase K; S binding, substrate specificity, pr 2e-05
4dzt_A276 Aqualysin-1, aqualysin-I; serine protease, calcium 3e-13
4dzt_A276 Aqualysin-1, aqualysin-I; serine protease, calcium 1e-05
1sh7_A284 Extracellular subtilisin-like serine proteinase; c 4e-13
1sh7_A284 Extracellular subtilisin-like serine proteinase; c 4e-05
2z30_A320 TK-subtilisin; thermococcus kodakaraensis, hydrola 7e-13
2z30_A320 TK-subtilisin; thermococcus kodakaraensis, hydrola 2e-08
2p4e_P692 Proprotein convertase subtilisin/kexin type 9; pro 1e-12
2p4e_P692 Proprotein convertase subtilisin/kexin type 9; pro 6e-05
3lpc_A340 APRB2; protease, subtilase, virulence factor, hydr 2e-12
3lpc_A340 APRB2; protease, subtilase, virulence factor, hydr 5e-05
2z2z_A395 TK-subtilisin precursor; thermococcus kodakaraensi 3e-12
2z2z_A395 TK-subtilisin precursor; thermococcus kodakaraensi 1e-08
3f7m_A279 Alkaline serine protease VER112; verticillium psal 1e-10
3f7m_A279 Alkaline serine protease VER112; verticillium psal 7e-05
2pwa_A279 Proteinase K; structure, alanine boronic acid, hyd 4e-10
2pwa_A279 Proteinase K; structure, alanine boronic acid, hyd 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2id4_A503 Kexin; KEX2, kexin, furin, proprotein, prohormone, 2e-05
1p8j_A471 Furin precursor; prohormone convertase, SPC1, PACE 6e-05
2oxa_A600 Extracellular serine protease; kexin, hydrolase; 1 9e-05
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 Back     alignment and structure
 Score =  540 bits (1392), Expect = 0.0
 Identities = 206/564 (36%), Positives = 300/564 (53%), Gaps = 47/564 (8%)

Query: 2   DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCF 61
           +GHGTHTAST AG  V  A+ +G    GTA GG PLAR+A YK CW          + C 
Sbjct: 92  NGHGTHTASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCWN---------DGCS 141

Query: 62  EADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA 121
           + D+LAA DDAI DGV ++S+S+G   P  +  D IAIG+ +AV+  IL + SAGN GP 
Sbjct: 142 DTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPN 201

Query: 122 PSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVP 181
             + ++L+PWL++V A ++DR FV  V +G G    G ++  ++  + +PLV   D+   
Sbjct: 202 FFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNT 260

Query: 182 GVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 241
           G  ++ +  C   S+ P  +KGKIV+C    G         K   G   +L     +   
Sbjct: 261 GFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPH----EFFKSLDGAAGVL---MTSNTR 313

Query: 242 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 301
              D++ LP++ +  +D +    YI S  +P A I ++ T+     AP + +F+SRGPN 
Sbjct: 314 DYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNR 372

Query: 302 LDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 361
               ++KPDI+ PG+ ILAAW   +        +R   + I SGTSMSCPH+   A  +K
Sbjct: 373 ATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVK 429

Query: 362 AIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYD 421
             +P WS AAI+SALMTTA   N +  P           F++GSGH  P KA  PGLVYD
Sbjct: 430 TYNPTWSPAAIKSALMTTASPMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYD 481

Query: 422 ASYEDYLLYLCSHGFS------FTNPVFRCPN-KPPSALNLNYPSIAI---PNLNGTVIV 471
           A+  DY+ +LC  G++       T     C +       +LNYPS  +   P+       
Sbjct: 482 ANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYF 541

Query: 472 KRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLT 531
            RT+T+V    S Y      P G+++  NP++L F+ +G +KSFT+TV       R  + 
Sbjct: 542 NRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV-------RGSIK 594

Query: 532 KQYVFGWYRWTDGLHLVRSPMAVS 555
              V     W+DG+H VRSP+ ++
Sbjct: 595 GFVVSASLVWSDGVHYVRSPITIT 618
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 Back     alignment and structure
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 Back     alignment and structure
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 Back     alignment and structure
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 Back     alignment and structure
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 Back     alignment and structure
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 Back     alignment and structure
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 Back     alignment and structure
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 Back     alignment and structure
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 Back     alignment and structure
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 Back     alignment and structure
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 Back     alignment and structure
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 Back     alignment and structure
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 Back     alignment and structure
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 Back     alignment and structure
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 Back     alignment and structure
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 Back     alignment and structure
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 Back     alignment and structure
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 Back     alignment and structure
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 Back     alignment and structure
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 Back     alignment and structure
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 Back     alignment and structure
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 Back     alignment and structure
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 Back     alignment and structure
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 Back     alignment and structure
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 Back     alignment and structure
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 Back     alignment and structure
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 Back     alignment and structure
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 Back     alignment and structure
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 Back     alignment and structure
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 Back     alignment and structure
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 Back     alignment and structure
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 Back     alignment and structure
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 Back     alignment and structure
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 Back     alignment and structure
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 Back     alignment and structure
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 Back     alignment and structure
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 Back     alignment and structure
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 Back     alignment and structure
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 Back     alignment and structure
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 Back     alignment and structure
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 Back     alignment and structure
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 Back     alignment and structure
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 Back     alignment and structure
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 Back     alignment and structure
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 Back     alignment and structure
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 Back     alignment and structure
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 Back     alignment and structure
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 Back     alignment and structure
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 100.0
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 100.0
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 100.0
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 100.0
3afg_A539 Subtilisin-like serine protease; propeptide, therm 100.0
3lxu_X 1354 Tripeptidyl-peptidase 2; spindle complex, aminopep 100.0
1gci_A269 Subtilisin; hydrolase, serine protease; 0.78A {Bac 100.0
4h6x_A357 Thiazoline oxidase/subtilisin-like protease; hydro 100.0
1dbi_A280 AK.1 serine protease; hydrolase; 1.80A {Bacillus S 100.0
1r0r_E274 Subtilisin carlsberg; high resolution, serine prot 100.0
3zxy_A282 Subtilisin-like protein; hydrolase; 1.58A {Prochlo 100.0
1to2_E281 Subtilisin BPN'; serine protease, hydrolase; HET: 100.0
1thm_A279 Thermitase; hydrolase(serine protease); 1.37A {The 100.0
2z2z_A395 TK-subtilisin precursor; thermococcus kodakaraensi 100.0
2x8j_A327 Intracellular subtilisin protease; hydrolase, seri 100.0
1r6v_A671 Subtilisin-like serine protease; sandwich domain, 100.0
2ixt_A310 36KDA protease; serine protease, sphericase, subti 100.0
3t41_A471 Epidermin leader peptide processing serine protea; 100.0
4h6w_A306 N-terminal cyanobactin protease; hydrolase; 2.45A 100.0
2z30_A320 TK-subtilisin; thermococcus kodakaraensis, hydrola 100.0
2iy9_A347 SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col 100.0
3lpc_A340 APRB2; protease, subtilase, virulence factor, hydr 100.0
1wmd_A434 Protease; alpha-beta hydrolase fold, jelly-roll be 100.0
2pwa_A279 Proteinase K; structure, alanine boronic acid, hyd 100.0
1sh7_A284 Extracellular subtilisin-like serine proteinase; c 100.0
2b6n_A278 Proteinase K; S binding, substrate specificity, pr 100.0
1p8j_A471 Furin precursor; prohormone convertase, SPC1, PACE 100.0
4dzt_A276 Aqualysin-1, aqualysin-I; serine protease, calcium 100.0
2oxa_A600 Extracellular serine protease; kexin, hydrolase; 1 100.0
2qtw_B546 Proprotein convertase subtilisin/kexin type 9; cor 100.0
2id4_A503 Kexin; KEX2, kexin, furin, proprotein, prohormone, 100.0
3f7m_A279 Alkaline serine protease VER112; verticillium psal 100.0
2p4e_P692 Proprotein convertase subtilisin/kexin type 9; pro 100.0
3hjr_A600 Extracellular serine protease; kexin, hydrolase; 1 100.0
1ga6_A372 Serine-carboxyl proteinase; serine-carboxyl protei 99.86
1t1e_A552 Kumamolisin; proenzyme, prosubtilase, activation m 99.84
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 98.99
3edy_A544 Tripeptidyl-peptidase 1; protease, TPP1, sedolisin 98.92
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 97.37
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 96.99
3kas_A 640 Transferrin receptor protein 1; transferrin recept 96.86
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 96.78
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 95.18
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 91.51
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 89.79
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 88.39
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 86.47
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
Probab=100.00  E-value=6.9e-107  Score=896.74  Aligned_cols=523  Identities=37%  Similarity=0.611  Sum_probs=470.6

Q ss_pred             CCCchhhHHhhccCCCCCCCccCCCCCceeeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 008679            2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS   81 (557)
Q Consensus         2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~~gvdVIn   81 (557)
                      +||||||||||||+...+.+++ |++.+.+.||||+|+|++||+|+..+         |..+++++||++|+++|+||||
T Consensus       101 ~GHGThVAgiiag~~~~~~~~~-G~~~g~~~GvAP~A~l~~~kv~~~~g---------~~~~~i~~Ai~~A~~~gvdVIn  170 (649)
T 3i6s_A          101 DGHGTHCASITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSFNEG---------TFTSDLIAAMDQAVADGVDMIS  170 (649)
T ss_dssp             SSHHHHHHHHHHCCCEEEEEET-TEEEEEECCSSTTCEEEEEECEETTE---------ECHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCcHHHHHHHHhCCCCcCcccc-ccccCceeEECCCCEEEEEeccCCCC---------CCHHHHHHHHHHHHHcCCCEEE
Confidence            6999999999999988888887 88888899999999999999999864         8999999999999999999999


Q ss_pred             EecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEEEeeee
Q 008679           82 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV  161 (557)
Q Consensus        82 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~~g~~~  161 (557)
                      ||||.. ...+..++++.++++|+++|++||+||||+|+...++.+.+||+|+|||++.+|.|...+.++|++.+.|+++
T Consensus       171 ~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lgng~~~~g~sl  249 (649)
T 3i6s_A          171 ISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSL  249 (649)
T ss_dssp             ECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEETTSCEEEEECC
T ss_pred             eCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeCCCcEEeeeec
Confidence            999984 4567789999999999999999999999999998999999999999999999999999999999999999998


Q ss_pred             ccCCC-CceeeeEeecccccCCcCCCCCCCcCCCCCCCCCc--cceEEEEeeCCccchhhhHHHhhcCceEEEEEeCCCC
Q 008679          162 TPYNL-KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKV--KGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN  238 (557)
Q Consensus       162 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~g~~~~~~k~~~~~~~Ga~gvi~~n~~~~  238 (557)
                      +.... ...+||++..          ....|.+..++..++  +||||||+|+.|.+.+|.++++++|+.|+|++|+.  
T Consensus       250 ~~~~~~~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~--  317 (649)
T 3i6s_A          250 FPARAFVRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP--  317 (649)
T ss_dssp             CSSCBCEEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG--
T ss_pred             ccCcccCcceeeEecc----------cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc--
Confidence            87655 6778999864          346799988888777  99999999999999999999999999999999986  


Q ss_pred             CCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCeeeecCCcE
Q 008679          239 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI  318 (557)
Q Consensus       239 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I  318 (557)
                       .....+.+.+|+++|+.++++.|++|++++.+++++|.+..++......+.++.||||||+...+++|||||+|||++|
T Consensus       318 -~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~I  396 (649)
T 3i6s_A          318 -GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLI  396 (649)
T ss_dssp             -GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEEEECSSE
T ss_pred             -cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEEeCCCCe
Confidence             3455677899999999999999999999999999999999999888889999999999999988899999999999999


Q ss_pred             EecccCCCCCCccccCc-cccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHccccccCCCCCcccCC-CCC
Q 008679          319 LAAWSEASSPSKLAFDK-RIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA-DGS  396 (557)
Q Consensus       319 ~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~-~~~  396 (557)
                      +++|+..........+. +...|..|||||||||||||++|||||+||+|+|++||++||+||.+++..++++.+. .+.
T Consensus       397 lsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~~~~  476 (649)
T 3i6s_A          397 LAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNK  476 (649)
T ss_dssp             EEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETTTSS
T ss_pred             EeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccccccCC
Confidence            99999865433322222 3468999999999999999999999999999999999999999999999998888764 466


Q ss_pred             CCCCCeeeccccCccCcCCCCceeeccchhhhhhhhcCCCCCC------CCccc--CCCCCCCCCCCCCCeeEeec-CCc
Q 008679          397 IATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT------NPVFR--CPNKPPSALNLNYPSIAIPN-LNG  467 (557)
Q Consensus       397 ~~~~~~~G~G~vn~~~A~~~~lv~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~ln~ps~~~~~-~~~  467 (557)
                      ++++++||+|+||+.+|++||||||++++||++|||+++|+.+      +..+.  |+.   ...+||||||+++. +.+
T Consensus       477 ~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~---~~~~lNyPs~~~~~~~~~  553 (649)
T 3i6s_A          477 AATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN---PSADLNYPSFIALYSIEG  553 (649)
T ss_dssp             BCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC---CCCCCCCSSEEEEECCSS
T ss_pred             cCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC---chhhcCCCcEEeecccCC
Confidence            8899999999999999999999999999999999999999865      34456  985   46799999999987 566


Q ss_pred             e-----EEEEEEEEEcCCCCeEEEEEeeCCCccEEEEecceEEEcCCCcEEEEEEEEEeCcccccccCCCceEEEEEEEE
Q 008679          468 T-----VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT  542 (557)
Q Consensus       468 ~-----~t~~~tvtn~~~~~~ty~~~v~~~~g~~~~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~G~l~~~  542 (557)
                      .     ++|+|||||||+...+|+++++.|.|++|+|+|++|+|++.+|+++|+|||+..     ....+.|.||+|+|+
T Consensus       554 ~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~-----~~~~~~~~fg~l~w~  628 (649)
T 3i6s_A          554 NFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI-----GDEGQSRNVGSITWV  628 (649)
T ss_dssp             CCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC-----CC---CCCEEEEEEE
T ss_pred             CCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec-----ccCCCceEEEEEEEE
Confidence            6     899999999999899999999999999999999999999899999999999986     344567899999999


Q ss_pred             C--CccEEEeEEEEEe
Q 008679          543 D--GLHLVRSPMAVSF  556 (557)
Q Consensus       543 ~--~~~~v~~P~~~~~  556 (557)
                      +  ++|.||+||+|++
T Consensus       629 ~~~~~h~vrsPi~v~~  644 (649)
T 3i6s_A          629 EQNGNHSVRSPIVTSP  644 (649)
T ss_dssp             ETTSCCEEEEEEEEEE
T ss_pred             cCCCCeEEEEeEEEEE
Confidence            8  8999999999986
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Back     alignment and structure
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Back     alignment and structure
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Back     alignment and structure
>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A Back     alignment and structure
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Back     alignment and structure
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Back     alignment and structure
>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A Back     alignment and structure
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Back     alignment and structure
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Back     alignment and structure
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Back     alignment and structure
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Back     alignment and structure
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Back     alignment and structure
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Back     alignment and structure
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Back     alignment and structure
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} Back     alignment and structure
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Back     alignment and structure
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Back     alignment and structure
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Back     alignment and structure
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Back     alignment and structure
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Back     alignment and structure
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Back     alignment and structure
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Back     alignment and structure
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Back     alignment and structure
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Back     alignment and structure
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Back     alignment and structure
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Back     alignment and structure
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A Back     alignment and structure
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Back     alignment and structure
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} Back     alignment and structure
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* Back     alignment and structure
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A Back     alignment and structure
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 557
d1v6ca_435 c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud 4e-35
d1r6va_671 c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni 8e-12
d2ixta1309 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus 8e-11
d1to2e_281 c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie 3e-10
d1r0re_274 c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls 7e-10
d1gcia_269 c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 4e-09
d1p8ja2334 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou 1e-08
d1wmda2318 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, 6e-08
d2pwaa1279 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach 1e-06
d2id4a2339 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak 1e-05
d1dbia_280 c.41.1.1 (A:) Thermostable serine protease {Bacill 4e-04
d1thma_279 c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar 0.001
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score =  135 bits (339), Expect = 4e-35
 Identities = 72/420 (17%), Positives = 130/420 (30%), Gaps = 62/420 (14%)

Query: 2   DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCF 61
           + HGTH A T+A                   G  P     I+            + +   
Sbjct: 63  NAHGTHVAGTIAAIA----------NNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVA 112

Query: 62  EADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA 121
             D       A     +V+++S+G +      R+ +         + +L+  +AGN+G +
Sbjct: 113 AIDTCVNSGGA-----NVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGNAGDS 163

Query: 122 PSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVP 181
             S       +++V A   + D          +EI G                    ++ 
Sbjct: 164 SYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEA----------------ILS 207

Query: 182 GVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 241
            V   E                 +V   R +    S       A   G +      NG  
Sbjct: 208 TVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGAL-AECTVNGTS 266

Query: 242 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 301
           +S              + I + E + +  +    I   +          +    S  P  
Sbjct: 267 FSCGN---------MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGL 317

Query: 302 LDPYIL--KPDITAPGLNILAAWSEA----SSPSKLAFDKRIVKYTIFSGTSMSCPHVAA 355
            +P+++    DIT P +++  A   A       S    ++    Y  ++GTSM+ PHV+ 
Sbjct: 318 QNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSG 377

Query: 356 AAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 415
            A L+ + HP+ S++ +R+AL  TA           +           G G      A  
Sbjct: 378 VATLVWSYHPECSASQVRAALNATA-----------DDLSVAGRDNQTGYGMINAVAAKA 426
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 Back     information, alignment and structure
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 Back     information, alignment and structure
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 Back     information, alignment and structure
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 Back     information, alignment and structure
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 Back     information, alignment and structure
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 Back     information, alignment and structure
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 Back     information, alignment and structure
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 Back     information, alignment and structure
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 Back     information, alignment and structure
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 Back     information, alignment and structure
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d1v6ca_435 Alkaline serine protease Apa1 {Pseudoalteromonas s 100.0
d1r6va_671 Fervidolysin {Fervidobacterium pennivorans [TaxId: 100.0
d1dbia_280 Thermostable serine protease {Bacillus sp., AK.1 [ 100.0
d1to2e_281 Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' 100.0
d1gcia_269 Subtilisin {Bacillus lentus [TaxId: 1467]} 100.0
d1thma_279 Thermitase {Thermoactinomyces vulgaris [TaxId: 202 100.0
d1r0re_274 Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 100.0
d2ixta1309 Sphericase {Bacillus sphaericus [TaxId: 1421]} 100.0
d2pwaa1279 Proteinase K {Fungus (Tritirachium album), strain 100.0
d1wmda2318 Alkaline serine protease kp-43, N-terminal domain 100.0
d1p8ja2334 Furin, N-terminal domain {Mouse (Mus musculus) [Ta 99.96
d2id4a2339 Kexin, N-terminal domain {Baker's yeast (Saccharom 99.96
d1ga6a_369 Serine-carboxyl proteinase, SCP {Pseudomonas sp., 99.9
d1t1ga_357 Serine-carboxyl proteinase, SCP {Bacillus novosp. 99.87
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 97.39
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 97.04
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 96.63
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=100.00  E-value=5.1e-43  Score=371.42  Aligned_cols=328  Identities=24%  Similarity=0.286  Sum_probs=206.3

Q ss_pred             CCCchhhHHhhccCCCCCCCccCCCCCceeeeecC--CCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHH-CCCc
Q 008679            2 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAP--LARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR-DGVH   78 (557)
Q Consensus         2 ~GHGThVAgiiAG~~~~~~~~~~g~~~~~~~GvAP--~A~L~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~A~~-~gvd   78 (557)
                      +||||||||||||+.         . +..+.||||  +++|+.+|++....        .+...++++||+++++ .+++
T Consensus        63 ~gHGThvAgiiag~~---------~-~~g~~GvAp~~~~~l~~~~~~~~~~--------~~~~~~~~~a~~~a~~~~~~~  124 (435)
T d1v6ca_          63 NAHGTHVAGTIAAIA---------N-NEGVVGVMPNQNANIHIVKVFNEAG--------WGYSSSLVAAIDTCVNSGGAN  124 (435)
T ss_dssp             CCHHHHHHHHHHCCC---------S-SSBCCCSSCSSCSEEEEEECEETTE--------ECCSSCHHHHHHHHHHTTCCS
T ss_pred             CCcHHHHHHHHhccC---------C-CCceEEEecccCceeeeeecccccc--------cchhhhhhhHHHHHhhcccce
Confidence            589999999999972         2 123579999  89999999998765        3666779999999996 5999


Q ss_pred             EEEEecCCCCCCCCCcchHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEecccccCcceeeeEEeCCCcEE--
Q 008679           79 VLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI--  156 (557)
Q Consensus        79 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~~~~~--  156 (557)
                      |||+|||..    .....++.++.++.++|++||+||||+|+...+.+..++++|+||+.+.+.........+....+  
T Consensus       125 vin~S~g~~----~~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~a  200 (435)
T d1v6ca_         125 VVTMSLGGS----GSTTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISG  200 (435)
T ss_dssp             EEEECCCBS----CCBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEE
T ss_pred             EEecccCCC----CCCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEee
Confidence            999999983    23456677888899999999999999998888888888999999998765432221111111111  


Q ss_pred             EeeeeccCCCCceeeeEe---ecc-cccCCc------CCCCCCC---------------c--CCCCCCCCCccceEEEEe
Q 008679          157 IGKTVTPYNLKKMHPLVY---AAD-VVVPGV------HQNETNQ---------------C--LPGSLTPEKVKGKIVLCM  209 (557)
Q Consensus       157 ~g~~~~~~~~~~~~~l~~---~~~-~~~~~~------~~~~~~~---------------c--~~~~~~~~~~~gkivl~~  209 (557)
                      +|..+..........+..   ... ......      .......               |  ....+...++.+++.++.
T Consensus       201 pG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (435)
T d1v6ca_         201 PGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVE  280 (435)
T ss_dssp             ECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEE
T ss_pred             cccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceee
Confidence            111111000000000000   000 000000      0000000               0  001111234445555555


Q ss_pred             eCCc-----cchhhhHHHhhcCceEEEEEeCCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEEeceEEee
Q 008679          210 RGSG-----FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLH  284 (557)
Q Consensus       210 ~g~~-----~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~  284 (557)
                      +...     ....+.......++.+++.+++                                                 
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  311 (435)
T d1v6ca_         281 RVGNQGSSYPEINSTKACKTAGAKGIIVYSN-------------------------------------------------  311 (435)
T ss_dssp             CCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-------------------------------------------------
T ss_pred             ccCCccccceeeeeceeecccCCcceEEecc-------------------------------------------------
Confidence            4321     2333334444444444444433                                                 


Q ss_pred             cCCCCccccccCCCCCCCC--CCCcCCeeeecCCcEEecccCCC----CCCccccCccccceeeeccccchhhhHHHHHH
Q 008679          285 TQPAPFMANFTSRGPNALD--PYILKPDITAPGLNILAAWSEAS----SPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAA  358 (557)
Q Consensus       285 ~~~~~~~a~fSS~GP~~~~--~~~lKPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aA  358 (557)
                                 +.+|....  ....||||.+||..|.++.....    .............|..|||||||||||||++|
T Consensus       312 -----------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aA  380 (435)
T d1v6ca_         312 -----------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVAT  380 (435)
T ss_dssp             -----------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHH
T ss_pred             -----------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHH
Confidence                       22232211  15679999999999876643210    00000011123679999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHccccccCCCCCcccCCCCCCCCCCeeeccccCccCcCCCCceeeccchhhhhhhhc
Q 008679          359 LLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCS  433 (557)
Q Consensus       359 Ll~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~~~~~~~~~~~~~~  433 (557)
                      ||||+||+|+++|||++||+||+++..           ++++++||+|+||+.+|++           ||...|.
T Consensus       381 Ll~q~~P~~s~~~vk~~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~-----------~l~~~~~  433 (435)
T d1v6ca_         381 LVWSYHPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAKA-----------YLDESCT  433 (435)
T ss_dssp             HHHHHCTTSCHHHHHHHHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred             HHHHHCCCCCHHHHHHHHHhhCcccCC-----------CCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence            999999999999999999999997743           3567899999999999854           6766664
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Back     information, alignment and structure
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Back     information, alignment and structure
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Back     information, alignment and structure
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Back     information, alignment and structure
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Back     information, alignment and structure
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Back     information, alignment and structure
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Back     information, alignment and structure
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Back     information, alignment and structure
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Back     information, alignment and structure
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Back     information, alignment and structure
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Back     information, alignment and structure
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure