Citrus Sinensis ID: 008694

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSILYS
cHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccEEEEccEEEEEcccccccccEEEEcccccccccEEEEcccccccEEEcccccccccccccccccccccccccccccccEEcccEEEccEEEEEEEEcccHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccHHccccEEEccccccccccccEEEEEEEEcccccccccEEEEEEEccccccccEEEccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHcccccccccHHHHHHHcHHHHHccccHHHHHHccEEEEEccccccccEEEEEEcccEEEEEEccccHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHccccc
cccHHcccHHHHHHHHcccHcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcEEEEcccEEEEEHHEcccccEEEEEccccccccEEEEEEEcccEEEccHHccccccEEEccccccccccccccccEEEEEEccEEEEEEEEEEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccEEEEEccccccccccEEEEEEEEEcccccccccEEEEEEcccccccccEEcccccccccccccHHHHHHHHHHHHHcccEEcccccccEEEEcccHHHHHHHHHHHHHccccccccccHHccccHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEEEcccccEEEEEcccHHHHHHccEEEEcccccEEcccHHHHHHHHHHHHHHHcccccc
MEDAYARSVVEVLDffgvdptkgltdsqVARHVRIYgknvlpqeKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGetgltaflePSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGcfsilpaaelvpgdivevnvgckipaDMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNavyqdktnilFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNighfrdpshggflRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSlpsvetlgcttvicsdktgtlTTNMMSVAKICVVHSVqqgpiiaeygvtgttyapegvvfdssgiqlefpaqlpclLHIARCSALCNEsvlqynpdkgnyekiGEATEVALRVLAEKvglpgfdsmpsaLNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCvmfskgapesvlsrctnilcndngfivpMTANIRAELESRLNRldnsilys
MEDAYARSVVEvldffgvdptkgltdsqvarhvriygknvlpqekRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILpaaelvpgdivEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATnavyqdktnILFSGTVVVAGRARAVVVGVGAntamgsirdsmlqTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVrslpsvetlgctTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELesrlnrldnsilys
MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSvillilaanaavgviTETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTvvvagraravvvgvgaNTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSILYS
*****ARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSML****EVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAEL**************
*EDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQ**DEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGI*LEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSILY*
MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSILYS
*****ARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDN*****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNxxxxxxxxxxxxxxxxxxxxxGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSILYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q9SY55 998 Calcium-transporting ATPa yes no 0.996 0.556 0.830 0.0
P54209 1037 Cation-transporting ATPas N/A no 0.967 0.519 0.568 1e-172
Q9YGL9 1042 Sarcoplasmic/endoplasmic yes no 0.964 0.515 0.520 1e-147
O55143 1044 Sarcoplasmic/endoplasmic yes no 0.960 0.512 0.541 1e-146
P20647 1042 Sarcoplasmic/endoplasmic yes no 0.960 0.513 0.543 1e-146
P16615 1042 Sarcoplasmic/endoplasmic yes no 0.960 0.513 0.541 1e-146
P11607 1042 Sarcoplasmic/endoplasmic yes no 0.960 0.513 0.541 1e-146
P11507 1043 Sarcoplasmic/endoplasmic yes no 0.960 0.512 0.541 1e-145
O46674 997 Sarcoplasmic/endoplasmic yes no 0.960 0.536 0.541 1e-145
Q00779 997 Sarcoplasmic/endoplasmic N/A no 0.960 0.536 0.539 1e-145
>sp|Q9SY55|ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3 Back     alignment and function desciption
 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/555 (83%), Positives = 504/555 (90%)

Query: 1   MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
           MEDAYARSV EVLDFFGVDPTKGL+DSQV  H R+YG+NVLP+EKRT FWKLVLKQFDDL
Sbjct: 1   MEDAYARSVSEVLDFFGVDPTKGLSDSQVVHHSRLYGRNVLPEEKRTPFWKLVLKQFDDL 60

Query: 61  LVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRA 120
           LVKILI AA++SF LAL NGETGLTAFLEP VILLILAANAAVGVITETNAEKALEELRA
Sbjct: 61  LVKILIVAAIVSFVLALANGETGLTAFLEPFVILLILAANAAVGVITETNAEKALEELRA 120

Query: 121 YQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGE 180
           YQA+IATVLRNGCFSILPA ELVPGDIVEV VGCKIPAD+RMIEM SN  RVDQAILTGE
Sbjct: 121 YQANIATVLRNGCFSILPATELVPGDIVEVTVGCKIPADLRMIEMSSNTFRVDQAILTGE 180

Query: 181 SCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTE 240
           SCSVEK++D  + TNAVYQDK NILFSGT VVAGR RAVV+GVG+NTAMGSI DSMLQT+
Sbjct: 181 SCSVEKDVDCTLTTNAVYQDKKNILFSGTDVVAGRGRAVVIGVGSNTAMGSIHDSMLQTD 240

Query: 241 DEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAV 300
           DE TPLKKKLDEFG+FLAKVIAGICVLVW+VNIGHF DPSHGGF +GAIHYFKIAVALAV
Sbjct: 241 DEATPLKKKLDEFGSFLAKVIAGICVLVWVVNIGHFSDPSHGGFFKGAIHYFKIAVALAV 300

Query: 301 AAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVA 360
           AAIPEGLPAVVTTCLALGTK+MARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSV+
Sbjct: 301 AAIPEGLPAVVTTCLALGTKKMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVS 360

Query: 361 KICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNES 420
           KICVV S + GP+I E+ V+GTTYAPEG VFDS+G+QL+ PAQ PCL H+A CS+LCN+S
Sbjct: 361 KICVVQSAEHGPMINEFTVSGTTYAPEGTVFDSNGMQLDLPAQSPCLHHLAMCSSLCNDS 420

Query: 421 VLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIE 480
           +LQYNPDK +YEKIGE+TEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH+WE +
Sbjct: 421 ILQYNPDKDSYEKIGESTEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHYWENQ 480

Query: 481 FKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIR 540
           FKKV +LEF+RDRKMMSVLCSHKQM VMFSKGAPES+++RC  ILCN +G +VP+TA  R
Sbjct: 481 FKKVYVLEFTRDRKMMSVLCSHKQMDVMFSKGAPESIIARCNKILCNGDGSVVPLTAAGR 540

Query: 541 AELESRLNRLDNSIL 555
           AELESR     +  L
Sbjct: 541 AELESRFYSFGDETL 555
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to an endomembrane compartment. Involved in calcium-enhanced root growth, in tolerance to toxic levels of manganese and in secretory processes. Has a crucial role in manganese nutrition, but is not involved in transporting copper, iron or zinc.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8
>sp|P54209|ATC1_DUNBI Cation-transporting ATPase CA1 OS=Dunaliella bioculata GN=CA1 PE=2 SV=1 Back     alignment and function description
>sp|Q9YGL9|AT2A3_CHICK Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Gallus gallus GN=ATP2A3 PE=2 SV=1 Back     alignment and function description
>sp|O55143|AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Mus musculus GN=Atp2a2 PE=1 SV=2 Back     alignment and function description
>sp|P20647|AT2A2_RABIT Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Oryctolagus cuniculus GN=ATP2A2 PE=1 SV=2 Back     alignment and function description
>sp|P16615|AT2A2_HUMAN Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Homo sapiens GN=ATP2A2 PE=1 SV=1 Back     alignment and function description
>sp|P11607|AT2A2_PIG Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Sus scrofa GN=ATP2A2 PE=2 SV=1 Back     alignment and function description
>sp|P11507|AT2A2_RAT Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Rattus norvegicus GN=Atp2a2 PE=1 SV=1 Back     alignment and function description
>sp|O46674|AT2A2_CANFA Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Canis familiaris GN=ATP2A2 PE=2 SV=1 Back     alignment and function description
>sp|Q00779|AT2A2_FELCA Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Felis catus GN=ATP2A2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
225458876 999 PREDICTED: calcium-transporting ATPase 3 0.982 0.547 0.879 0.0
302142178 1000 unnamed protein product [Vitis vinifera] 0.982 0.547 0.879 0.0
356510586 1001 PREDICTED: calcium-transporting ATPase 3 0.983 0.547 0.855 0.0
356510588 1015 PREDICTED: calcium-transporting ATPase 3 0.983 0.539 0.855 0.0
357116952 1000 PREDICTED: calcium-transporting ATPase 3 0.983 0.548 0.835 0.0
18391113 998 Ca2+-transporting ATPase [Arabidopsis th 0.996 0.556 0.830 0.0
4185855 998 Ca2+-ATPase [Arabidopsis thaliana] 0.996 0.556 0.830 0.0
49659964 997 ECA3 [Arabidopsis thaliana] 0.996 0.556 0.827 0.0
297601626 755 Os03g0730800 [Oryza sativa Japonica Grou 0.983 0.725 0.833 0.0
449482739 1020 PREDICTED: LOW QUALITY PROTEIN: calcium- 0.983 0.537 0.828 0.0
>gi|225458876|ref|XP_002285405.1| PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/547 (87%), Positives = 522/547 (95%)

Query: 1   MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
           MEDAYARSV EVL+FF VDPTKGLTDSQ++++ RIYG+NVLP+E+ T FWKLVLKQFDDL
Sbjct: 1   MEDAYARSVAEVLEFFEVDPTKGLTDSQISKYARIYGRNVLPEERSTPFWKLVLKQFDDL 60

Query: 61  LVKILIAAAVISFFLALINGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRA 120
           LVKILIAAA++SF LALINGETGL AFLEPSVIL+ILAANAAVGVITETNAEKALEELRA
Sbjct: 61  LVKILIAAALVSFVLALINGETGLIAFLEPSVILMILAANAAVGVITETNAEKALEELRA 120

Query: 121 YQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGE 180
           YQADIATVLRNGCFSILPA +LVPGDIVEV+VGCKIPADMRMIEMLSNQLRVDQAILTGE
Sbjct: 121 YQADIATVLRNGCFSILPATDLVPGDIVEVSVGCKIPADMRMIEMLSNQLRVDQAILTGE 180

Query: 181 SCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTE 240
           SCSVEKELDS +ATNAVYQDKTNILFSGTVVVAGRA+AVVVGVGANTAMG+IRDSML+TE
Sbjct: 181 SCSVEKELDSTVATNAVYQDKTNILFSGTVVVAGRAKAVVVGVGANTAMGNIRDSMLRTE 240

Query: 241 DEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAV 300
           DEVTPLKKKLDEFGTFLAKVIAGIC+LVWIVNIGHFRDPSHGG LRGAIHYFKIAVALAV
Sbjct: 241 DEVTPLKKKLDEFGTFLAKVIAGICMLVWIVNIGHFRDPSHGGLLRGAIHYFKIAVALAV 300

Query: 301 AAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVA 360
           AAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSV+
Sbjct: 301 AAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVS 360

Query: 361 KICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNES 420
           KICV HSV  GP+ AEY ++GTTY+PEGVV DS+GIQL+FPAQLPCLLHIA CSALCNES
Sbjct: 361 KICVFHSVHHGPVTAEYSISGTTYSPEGVVLDSAGIQLDFPAQLPCLLHIAMCSALCNES 420

Query: 421 VLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIE 480
           +LQYNPDKG+YEKIGEATEVALRVLAEKVGLPGF+SMPSALNMLSKHERASYCN +WE +
Sbjct: 421 ILQYNPDKGDYEKIGEATEVALRVLAEKVGLPGFNSMPSALNMLSKHERASYCNRYWENQ 480

Query: 481 FKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIR 540
           FKKV++L+FSRDRKMMSVLCS KQ+ +MFSKGAPES++SRCTNILCND+G  VP+TAN+R
Sbjct: 481 FKKVALLDFSRDRKMMSVLCSRKQLEIMFSKGAPESIISRCTNILCNDDGSTVPLTANLR 540

Query: 541 AELESRL 547
            ELE+R 
Sbjct: 541 TELEARF 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302142178|emb|CBI19381.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510586|ref|XP_003524018.1| PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356510588|ref|XP_003524019.1| PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357116952|ref|XP_003560240.1| PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|18391113|ref|NP_563860.1| Ca2+-transporting ATPase [Arabidopsis thaliana] gi|19865112|sp|Q9SY55.3|ECA3_ARATH RecName: Full=Calcium-transporting ATPase 3, endoplasmic reticulum-type; Short=AtECA3 gi|13162529|gb|AAC34328.2| calcium-transporting ATPase, ECA3 [Arabidopsis thaliana] gi|110738280|dbj|BAF01069.1| putative calcium ATPase [Arabidopsis thaliana] gi|156145808|gb|ABU53680.1| endomembrane calcium ATPase 3 [Arabidopsis thaliana] gi|332190424|gb|AEE28545.1| Ca2+-transporting ATPase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4185855|emb|CAA10660.1| Ca2+-ATPase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|49659964|gb|AAT68271.1| ECA3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297601626|ref|NP_001051163.2| Os03g0730800 [Oryza sativa Japonica Group] gi|255674865|dbj|BAF13077.2| Os03g0730800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449482739|ref|XP_004156389.1| PREDICTED: LOW QUALITY PROTEIN: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2201916 998 ECA3 "endoplasmic reticulum-ty 0.980 0.547 0.793 1.5e-232
RGD|621293 994 Atp2a1 "ATPase, Ca++ transport 0.960 0.538 0.508 2.8e-128
UNIPROTKB|F1RFH9 993 ATP2A1 "Uncharacterized protei 0.960 0.538 0.508 3.6e-128
MGI|MGI:105058 994 Atp2a1 "ATPase, Ca++ transport 0.960 0.538 0.506 3.6e-128
UNIPROTKB|E2RRB2 1000 ATP2A1 "Uncharacterized protei 0.962 0.536 0.504 4.6e-128
UNIPROTKB|J9P9P2 993 ATP2A1 "Uncharacterized protei 0.962 0.539 0.504 4.6e-128
UNIPROTKB|P04191 1001 ATP2A1 "Sarcoplasmic/endoplasm 0.958 0.533 0.507 7.6e-128
UNIPROTKB|Q0VCY0 993 ATP2A1 "Sarcoplasmic/endoplasm 0.962 0.539 0.506 1.2e-127
UNIPROTKB|O14983 1001 ATP2A1 "Sarcoplasmic/endoplasm 0.956 0.532 0.506 3.3e-127
UNIPROTKB|P16615 1042 ATP2A2 "Sarcoplasmic/endoplasm 0.960 0.513 0.507 4.2e-127
TAIR|locus:2201916 ECA3 "endoplasmic reticulum-type calcium-transporting ATPase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2243 (794.6 bits), Expect = 1.5e-232, P = 1.5e-232
 Identities = 433/546 (79%), Positives = 473/546 (86%)

Query:     1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
             MEDAYARSV EVLDFFGVDPTKGL+DSQV  H R+YG+NVLP+EKRT FWKLVLKQFDDL
Sbjct:     1 MEDAYARSVSEVLDFFGVDPTKGLSDSQVVHHSRLYGRNVLPEEKRTPFWKLVLKQFDDL 60

Query:    61 LVKILIAAAVISFFLALINGETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELRA 120
             LVKILI AA++SF LAL NGETGLTAFLEP                TETNAEKALEELRA
Sbjct:    61 LVKILIVAAIVSFVLALANGETGLTAFLEPFVILLILAANAAVGVITETNAEKALEELRA 120

Query:   121 YQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGE 180
             YQA+IATVLRNGCFSILPA ELVPGDIVEV VGCKIPAD+RMIEM SN  RVDQAILTGE
Sbjct:   121 YQANIATVLRNGCFSILPATELVPGDIVEVTVGCKIPADLRMIEMSSNTFRVDQAILTGE 180

Query:   181 SCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTE 240
             SCSVEK++D  + TNAVYQDK NILFSGT                NTAMGSI DSMLQT+
Sbjct:   181 SCSVEKDVDCTLTTNAVYQDKKNILFSGTDVVAGRGRAVVIGVGSNTAMGSIHDSMLQTD 240

Query:   241 DEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAV 300
             DE TPLKKKLDEFG+FLAKVIAGICVLVW+VNIGHF DPSHGGF +GAIHYFKIAVALAV
Sbjct:   241 DEATPLKKKLDEFGSFLAKVIAGICVLVWVVNIGHFSDPSHGGFFKGAIHYFKIAVALAV 300

Query:   301 AAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVA 360
             AAIPEGLPAVVTTCLALGTK+MARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSV+
Sbjct:   301 AAIPEGLPAVVTTCLALGTKKMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVS 360

Query:   361 KICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCNES 420
             KICVV S + GP+I E+ V+GTTYAPEG VFDS+G+QL+ PAQ PCL H+A CS+LCN+S
Sbjct:   361 KICVVQSAEHGPMINEFTVSGTTYAPEGTVFDSNGMQLDLPAQSPCLHHLAMCSSLCNDS 420

Query:   421 VLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIE 480
             +LQYNPDK +YEKIGE+TEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH+WE +
Sbjct:   421 ILQYNPDKDSYEKIGESTEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHYWENQ 480

Query:   481 FKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIR 540
             FKKV +LEF+RDRKMMSVLCSHKQM VMFSKGAPES+++RC  ILCN +G +VP+TA  R
Sbjct:   481 FKKVYVLEFTRDRKMMSVLCSHKQMDVMFSKGAPESIIARCNKILCNGDGSVVPLTAAGR 540

Query:   541 AELESR 546
             AELESR
Sbjct:   541 AELESR 546
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005388 "calcium-transporting ATPase activity" evidence=IEA;ISS;IMP
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006754 "ATP biosynthetic process" evidence=IEA
GO:0006812 "cation transport" evidence=IEA
GO:0006816 "calcium ion transport" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA
GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006828 "manganese ion transport" evidence=IGI
GO:0055071 "manganese ion homeostasis" evidence=IMP
GO:0012505 "endomembrane system" evidence=IDA
GO:0015410 "manganese-transporting ATPase activity" evidence=IMP
GO:0048364 "root development" evidence=IMP
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
RGD|621293 Atp2a1 "ATPase, Ca++ transporting, cardiac muscle, fast twitch 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFH9 ATP2A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:105058 Atp2a1 "ATPase, Ca++ transporting, cardiac muscle, fast twitch 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRB2 ATP2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P9P2 ATP2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P04191 ATP2A1 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCY0 ATP2A1 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O14983 ATP2A1 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P16615 ATP2A2 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SY55ECA3_ARATH3, ., 6, ., 3, ., 80.83060.99640.5561yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.3.80.914
3rd Layer3.6.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014975001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1000 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
TIGR01116 917 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic 0.0
COG0474 917 COG0474, MgtA, Cation transport ATPase [Inorganic 1e-124
TIGR01522 884 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium- 1e-89
TIGR01494 543 TIGR01494, ATPase_P-type, ATPase, P-type (transpor 2e-66
TIGR01517 944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 7e-66
TIGR01647 754 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e 1e-63
TIGR01523 1053 TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu 5e-61
pfam00122222 pfam00122, E1-E2_ATPase, E1-E2 ATPase 1e-60
TIGR01106 997 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux 7e-58
TIGR01524 867 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating 7e-49
PRK15122 903 PRK15122, PRK15122, magnesium-transporting ATPase; 3e-41
PRK10517 902 PRK10517, PRK10517, magnesium-transporting ATPase 5e-39
pfam1324691 pfam13246, Hydrolase_like2, Putative hydrolase of 2e-26
TIGR01525556 TIGR01525, ATPase-IB_hvy, heavy metal translocatin 7e-26
TIGR01512536 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb 5e-25
COG2217713 COG2217, ZntA, Cation transport ATPase [Inorganic 2e-24
TIGR01657 1054 TIGR01657, P-ATPase-V, P-type ATPase of unknown pu 3e-24
TIGR01511572 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans 5e-21
pfam0069069 pfam00690, Cation_ATPase_N, Cation transporter/ATP 1e-20
smart0083175 smart00831, Cation_ATPase_N, Cation transporter/AT 4e-19
PRK11033741 PRK11033, zntA, zinc/cadmium/mercury/lead-transpor 8e-14
TIGR01652 1057 TIGR01652, ATPase-Plipid, phospholipid-translocati 3e-12
PRK14010 673 PRK14010, PRK14010, potassium-transporting ATPase 6e-11
COG2216 681 COG2216, KdpB, High-affinity K+ transport system, 1e-10
TIGR01497 675 TIGR01497, kdpB, K+-transporting ATPase, B subunit 4e-08
PRK10671 834 PRK10671, copA, copper exporting ATPase; Provision 6e-06
PRK01122 679 PRK01122, PRK01122, potassium-transporting ATPase 9e-06
PRK10517 902 PRK10517, PRK10517, magnesium-transporting ATPase 4e-04
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information 
 Score =  637 bits (1644), Expect = 0.0
 Identities = 287/500 (57%), Positives = 357/500 (71%), Gaps = 14/500 (2%)

Query: 53  VLKQFDDLLVKILIAAAVISFFLALI-NGETGLTAFLEPSVILLILAANAAVGVITETNA 111
           VL+QF+DLLV+IL+ AA +SF LA    GE  +TAF+EP VILLIL ANA VGV  E NA
Sbjct: 1   VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNA 60

Query: 112 EKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLR 171
           EKA+E L+ Y+++ A VLR+G +S++ A +LVPGDIVE+ VG K+PAD+R++ + +  LR
Sbjct: 61  EKAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKT--LR 118

Query: 172 VDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGS 231
           VDQ+ILTGES SV K  +S+    AV QDK N+LFSGT+VVAG+AR VVV  G +T +G 
Sbjct: 119 VDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGK 178

Query: 232 IRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGF-LRGAIH 290
           IRD M   E E TPL+KKLDEFG  L+KVI  IC+LVW++NIGHF DP+ GG  ++GAI+
Sbjct: 179 IRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAIY 238

Query: 291 YFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTG 350
           YFKIAVALAVAAIPEGLPAV+TTCLALGT++MA+ NAIVR LPSVETLGCTTVICSDKTG
Sbjct: 239 YFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTG 298

Query: 351 TLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHI 410
           TLTTN MSV K+  +        + E+ VTGTTYAPEG V    G       Q   L  +
Sbjct: 299 TLTTNQMSVCKVVALDPSSSS--LNEFCVTGTTYAPEGGVIKDDGPVAG--GQDAGLEEL 354

Query: 411 ARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERA 470
           A  +ALCN+S L +N  KG YEK+GEATE AL+VL EK+GLP      +   + SK   A
Sbjct: 355 ATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPA-----TKNGVSSKRRPA 409

Query: 471 SYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNG 530
             CN  W  +FKK++ LEFSRDRK MSVLC       +F KGAPE VL RCT+IL N +G
Sbjct: 410 LGCNSVWNDKFKKLATLEFSRDRKSMSVLCKPSTGNKLFVKGAPEGVLERCTHIL-NGDG 468

Query: 531 FIVPMTANIRAELESRLNRL 550
             VP+T  ++  + S +  +
Sbjct: 469 RAVPLTDKMKNTILSVIKEM 488

This model describes the P-type ATPase responsible for translocating calcium ions across the endoplasmic reticulum membrane of eukaryotes , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. These pumps transfer Ca2+ from the cytoplasm to the lumen of the endoplasmic reticulum. In humans and mice, at least, there are multiple isoforms of the SERCA pump with overlapping but not redundant functions. Defects in SERCA isoforms are associated with diseases in humans. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the latter of which is modelled by TIGR01522 [Transport and binding proteins, Cations and iron carrying compounds]. Length = 917
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase Back     alignment and domain information
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium ATPase alpha subunit Back     alignment and domain information
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus Back     alignment and domain information
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus Back     alignment and domain information
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit Back     alignment and domain information
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
KOG0202 972 consensus Ca2+ transporting ATPase [Inorganic ion 100.0
TIGR01523 1053 ATPase-IID_K-Na potassium and/or sodium efflux P-t 100.0
COG0474 917 MgtA Cation transport ATPase [Inorganic ion transp 100.0
TIGR01106 997 ATPase-IIC_X-K sodium or proton efflux -- potassiu 100.0
TIGR01522 884 ATPase-IIA2_Ca golgi membrane calcium-translocatin 100.0
KOG0204 1034 consensus Calcium transporting ATPase [Inorganic i 100.0
PRK10517 902 magnesium-transporting ATPase MgtA; Provisional 100.0
TIGR01517 941 ATPase-IIB_Ca plasma-membrane calcium-translocatin 100.0
TIGR01116 917 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium 100.0
TIGR01524 867 ATPase-IIIB_Mg magnesium-translocating P-type ATPa 100.0
PRK15122 903 magnesium-transporting ATPase; Provisional 100.0
PLN03190 1178 aminophospholipid translocase; Provisional 100.0
TIGR01657 1054 P-ATPase-V P-type ATPase of unknown pump specifici 100.0
TIGR01652 1057 ATPase-Plipid phospholipid-translocating P-type AT 100.0
TIGR01647 755 ATPase-IIIA_H plasma-membrane proton-efflux P-type 100.0
KOG0203 1019 consensus Na+/K+ ATPase, alpha subunit [Inorganic 100.0
KOG0206 1151 consensus P-type ATPase [General function predicti 100.0
KOG0210 1051 consensus P-type ATPase [Inorganic ion transport a 100.0
KOG0208 1140 consensus Cation transport ATPase [Inorganic ion t 100.0
KOG0205 942 consensus Plasma membrane H+-transporting ATPase [ 100.0
PRK01122 679 potassium-transporting ATPase subunit B; Provision 100.0
PRK14010 673 potassium-transporting ATPase subunit B; Provision 100.0
TIGR01497 675 kdpB K+-transporting ATPase, B subunit. One sequen 100.0
TIGR01494 499 ATPase_P-type ATPase, P-type (transporting), HAD s 100.0
TIGR01525556 ATPase-IB_hvy heavy metal translocating P-type ATP 100.0
TIGR01511562 ATPase-IB1_Cu copper-(or silver)-translocating P-t 100.0
PRK11033741 zntA zinc/cadmium/mercury/lead-transporting ATPase 100.0
KOG0209 1160 consensus P-type ATPase [Inorganic ion transport a 100.0
TIGR01512536 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo 100.0
PRK10671 834 copA copper exporting ATPase; Provisional 100.0
COG2217713 ZntA Cation transport ATPase [Inorganic ion transp 100.0
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 100.0
PF00122230 E1-E2_ATPase: E1-E2 ATPase p-type cation-transport 100.0
COG2216 681 KdpB High-affinity K+ transport system, ATPase cha 99.97
PF1324691 Hydrolase_like2: Putative hydrolase of sodium-pota 99.79
PF0069069 Cation_ATPase_N: Cation transporter/ATPase, N-term 99.49
smart0083164 Cation_ATPase_N Cation transporter/ATPase, N-termi 99.19
KOG4383 1354 consensus Uncharacterized conserved protein [Funct 97.52
PF00702215 Hydrolase: haloacid dehalogenase-like hydrolase; I 96.62
TIGR01652 1057 ATPase-Plipid phospholipid-translocating P-type AT 94.37
PLN03190 1178 aminophospholipid translocase; Provisional 91.62
KOG0206 1151 consensus P-type ATPase [General function predicti 86.38
TIGR01657 1054 P-ATPase-V P-type ATPase of unknown pump specifici 81.68
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-89  Score=708.59  Aligned_cols=536  Identities=54%  Similarity=0.790  Sum_probs=477.5

Q ss_pred             ChhhhcCCHHHHHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Q 008694            1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALING   80 (557)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (557)
                      |+++|+.+++|++..|.+++++||+.+|+.+|++.||.|+++.....++|+++++||.+++..++++++++||++.+   
T Consensus         1 t~~~~~~~v~e~~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~---   77 (972)
T KOG0202|consen    1 TEEAHAKSVSEVLAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLAD---   77 (972)
T ss_pred             CcchhcCcHHHHHHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999974   


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccce
Q 008694           81 ETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADM  160 (557)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD~  160 (557)
                            |.+++.|.++++++..++++||+++.+.++.|+++.|..++|+|+|+.+.+++++|||||||.++-||+||||.
T Consensus        78 ------~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADl  151 (972)
T KOG0202|consen   78 ------FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLRSGKLQHILARELVPGDIVELKVGDKIPADL  151 (972)
T ss_pred             ------cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEecCcccceehhccCCCCEEEEecCCccccce
Confidence                  34677778888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecCCeeEEecccccCCcceeeccccccc-ccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhccc
Q 008694          161 RMIEMLSNQLRVDQAILTGESCSVEKELDSII-ATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQT  239 (557)
Q Consensus       161 ill~~~~g~~~vdes~ltGes~~~~k~~~~~~-~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~  239 (557)
                      ++++.  -++.||||.||||+.|+.|.....+ +++....++.|++|+||.|..|.++|+|+.||.+|.+|++.+.+...
T Consensus       152 Rl~e~--~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~  229 (972)
T KOG0202|consen  152 RLIEA--KSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQAT  229 (972)
T ss_pred             eEEee--eeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhcc
Confidence            99994  5599999999999999999888877 77888899999999999999999999999999999999999999998


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc-chhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 008694          240 EDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALG  318 (557)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~  318 (557)
                      ...++|++++++.+...+..++.++|+.+|+++..++.++.+++ |++....+|..++++.++++|+|||+.+++++++|
T Consensus       230 e~~kTPLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~~p~~~g~~fk~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG  309 (972)
T KOG0202|consen  230 ESPKTPLQKKLDEFGKQLSKVISFICVGVWLLNIGHFLDPVHGGSWFKGALYYFKIAVSLAVAAIPEGLPAVVTTTLALG  309 (972)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHheehhhhHHHhhhhhhccccccccchhchhhhhhHHHHHHHHhccCCCcchhhhhHHHh
Confidence            88899999999999999998889999999999888887766665 67889999999999999999999999999999999


Q ss_pred             HHHHHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEecccccCcceeeeeeeccccCCCCccccCCCccc
Q 008694          319 TKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQL  398 (557)
Q Consensus       319 ~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (557)
                      .+||+|+++++|...+.|+||.+++||+|||||||+|+|++.++|+.+......  .+....+..|+|.+.+........
T Consensus       310 ~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~--~~f~~tg~ty~~~g~v~~~~~~~~  387 (972)
T KOG0202|consen  310 TRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATV--DEFNPTGTTYSPEGEVFKDGLYEK  387 (972)
T ss_pred             HHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccc--cccccCCceeCCCCceEecCcccc
Confidence            999999999999999999999999999999999999999999999999865443  455667788888877655443222


Q ss_pred             cCCCChHHHHHHHHHhcccccceeeccCCCCcceecCChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhcccccccccc
Q 008694          399 EFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWE  478 (557)
Q Consensus       399 ~~~~~~~~~~~~~~~~~lC~~~~~~~~~~~~~~~~~~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (557)
                      ......+.+.+++++.++||++...+++. ..|...|.|+|.||..++.+.|+........     .+.+ ...+++-+.
T Consensus       388 ~~~~~~~~l~~l~~i~~lCNda~v~~~~~-~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~-----s~~~-~~~c~~~~~  460 (972)
T KOG0202|consen  388 DKAGDNDLLQELAEICALCNDATVEYNDA-DCYEKVGEPTEGALIVLAEKMGLPGTRSTNL-----SNEE-ASACNRVYS  460 (972)
T ss_pred             ccccccHHHHHHHHHHHhhhhhhhhcCch-hhHHhcCCchHHHHHHHHHHcCCCcchhhcc-----cccc-cccchhHHH
Confidence            23445567888899999999998887655 7788889999999999999999876541111     0111 234445556


Q ss_pred             cccceeeeecCCccCceEEEEEeeCC---eEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHHhhhc
Q 008694          479 IEFKKVSILEFSRDRKMMSVLCSHKQ---MCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSIL  555 (557)
Q Consensus       479 ~~~~il~~~~F~s~rk~mSVvv~~~~---~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gl  555 (557)
                      ..++..+++||+|+||+|||.+.++.   ++.+|+|||+|.|+++|++++.+.++..+|||+..|+.|++...+|+++||
T Consensus       461 ~~~~~~~elpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gL  540 (972)
T KOG0202|consen  461 RLFKKIAELPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGL  540 (972)
T ss_pred             HhhhheeEeecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccc
Confidence            77888899999999999999998654   489999999999999999998763446699999999999999999999998


Q ss_pred             c
Q 008694          556 Y  556 (557)
Q Consensus       556 ~  556 (557)
                      -
T Consensus       541 R  541 (972)
T KOG0202|consen  541 R  541 (972)
T ss_pred             e
Confidence            3

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10517 magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase Back     alignment and domain information
>PRK15122 magnesium-transporting ATPase; Provisional Back     alignment and domain information
>PLN03190 aminophospholipid translocase; Provisional Back     alignment and domain information
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0206 consensus P-type ATPase [General function prediction only] Back     alignment and domain information
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK01122 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>PRK14010 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>TIGR01497 kdpB K+-transporting ATPase, B subunit Back     alignment and domain information
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase Back     alignment and domain information
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13246 Hydrolase_like2: Putative hydrolase of sodium-potassium ATPase alpha subunit Back     alignment and domain information
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus Back     alignment and domain information
>KOG4383 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) Back     alignment and domain information
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>PLN03190 aminophospholipid translocase; Provisional Back     alignment and domain information
>KOG0206 consensus P-type ATPase [General function prediction only] Back     alignment and domain information
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3tlm_A 992 Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp 1e-134
2dqs_A 995 Crystal Structure Of The Calcium Pump With Amppcp I 1e-133
1kju_A 994 Ca2+-Atpase In The E2 State Length = 994 1e-133
3ba6_A 994 Structure Of The Ca2e1p Phosphoenzyme Intermediate 1e-133
3b8e_A 998 Crystal Structure Of The Sodium-Potassium Pump Leng 5e-36
3n23_A 992 Crystal Structure Of The High Affinity Complex Betw 4e-35
3ixz_A 1034 Pig Gastric H+K+-Atpase Complexed With Aluminium Fl 2e-33
2zxe_A 1028 Crystal Structure Of The Sodium - Potassium Pump In 2e-31
1mhs_A 920 Model Of Neurospora Crassa Proton Atpase Length = 9 2e-29
3b8c_A 885 Crystal Structure Of A Plasma Membrane Proton Pump 5e-20
2voy_H48 Cryoem Model Of Copa, The Copper Transporting Atpas 2e-12
3j09_A 723 High Resolution Helical Reconstruction Of The Bacte 7e-08
3j08_A 645 High Resolution Helical Reconstruction Of The Bacte 8e-08
2voy_G36 Cryoem Model Of Copa, The Copper Transporting Atpas 1e-07
2voy_B42 Cryoem Model Of Copa, The Copper Transporting Atpas 2e-07
2hc8_A113 Structure Of The A. Fulgidus Copa A-Domain Length = 3e-04
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992 Back     alignment and structure 
Iteration: 1

 Score =  473 bits (1218), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/555 (50%), Positives = 354/555 (63%), Gaps = 19/555 (3%)
Query: 1   MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
           ME A++++  E L +FGV  T GLT  QV RH+  YG N LP E+  + W+LVL+QF+DL
Sbjct: 1   MEAAHSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDL 60
Query: 61  LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
           LV+IL+ AA ISF LA    GE  +TAF+EP                 E NAE A+E L+
Sbjct: 61  LVRILLLAACISFVLAWFEEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
            Y+ ++  V R    S+  + A ++VPGDIVEV VG K+PAD+R++ + S  LRVDQ+IL
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSIL 180
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
           TGES SV K  + +    AV QDK N+LFSGT                 T +G IRD M 
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMA 240
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
            TE + TPL++KLDEFG  L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 241 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 300
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
           ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN 
Sbjct: 301 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
Query: 357 MSVAKICVVHSVQQGP-IIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
           MSV K+ ++  +     ++ E+ VTG+TYAPEG V  +   +     Q   L+ +A   A
Sbjct: 361 MSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKND--KPVRSGQYDGLVELATICA 418
Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
           LCN+S L +N  KG YEK+GEATE AL  L EK+ +       + +  LSK ERA+ CN 
Sbjct: 419 LCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACNS 473
Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQMCV-----MFSKGAPESVLSRCTNILCNDNG 530
                 KK   LEFSRDRK MSV CS  +        MF KGAPE V+ RC  +      
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 533
Query: 531 FIVPMTANIRAELES 545
             VPMT  ++ ++ S
Sbjct: 534 --VPMTGPVKEKILS 546
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995 Back     alignment and structure
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994 Back     alignment and structure
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994 Back     alignment and structure
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998 Back     alignment and structure
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992 Back     alignment and structure
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034 Back     alignment and structure
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028 Back     alignment and structure
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase Length = 920 Back     alignment and structure
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump Length = 885 Back     alignment and structure
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From Archaeoglobus Fulgidus Length = 48 Back     alignment and structure
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 723 Back     alignment and structure
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 645 Back     alignment and structure
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From Archaeoglobus Fulgidus Length = 36 Back     alignment and structure
>pdb|2VOY|B Chain B, Cryoem Model Of Copa, The Copper Transporting Atpase From Archaeoglobus Fulgidus Length = 42 Back     alignment and structure
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain Length = 113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 0.0
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 1e-175
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 1e-167
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 1e-124
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 1e-122
3gwi_A170 Magnesium-transporting ATPase, P-type 1; P-type AT 3e-14
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 7e-12
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 1e-11
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 1e-10
3rfu_A736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 5e-09
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
 Score =  709 bits (1832), Expect = 0.0
 Identities = 296/561 (52%), Positives = 375/561 (66%), Gaps = 20/561 (3%)

Query: 1   MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
           ME A+++S  E L +FGV  T GLT  QV RH+  YG N LP E+  + W+LV++QF+DL
Sbjct: 2   MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 61

Query: 61  LVKILIAAAVISFFLALI-NGETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELR 119
           LV+IL+ AA ISF LA    GE  +TAF+EP VILLIL ANA VGV  E NAE A+E L+
Sbjct: 62  LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 121

Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
            Y+ ++  V R    S+  + A ++VPGDIVEV VG K+PAD+R++ + S  LRVDQ+IL
Sbjct: 122 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 181

Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSML 237
           TGES SV K  + +    AV QDK N+LFSGT + AG+A  +V   G +T +G IRD M 
Sbjct: 182 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 241

Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
            TE + TPL++KLDEFG  L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 242 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 301

Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
           ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN 
Sbjct: 302 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 361

Query: 357 MSVAKICVVHSVQQGPI-IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
           MSV K+ ++  V      + E+ +TG+TYAPEG V  +   +     Q   L+ +A   A
Sbjct: 362 MSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATICA 419

Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
           LCN+S L +N  KG YEK+GEATE AL  L EK+ +       + +  LSK ERA+ CN 
Sbjct: 420 LCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVF-----NTEVRNLSKVERANACNS 474

Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQ------MCVMFSKGAPESVLSRCTNILCNDN 529
                 KK   LEFSRDRK MSV CS  +         MF KGAPE V+ RC  +     
Sbjct: 475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTT 534

Query: 530 GFIVPMTANIRAELESRLNRL 550
              VPMT  ++ ++ S +   
Sbjct: 535 --RVPMTGPVKEKILSVIKEW 553
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034 Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli} Length = 170 Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723 Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Length = 113 Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645 Back     alignment and structure
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736 Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 100.0
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 100.0
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 100.0
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 100.0
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 100.0
3rfu_A736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 100.0
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 100.0
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 100.0
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 99.93
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 99.92
3gwi_A170 Magnesium-transporting ATPase, P-type 1; P-type AT 99.67
2yj3_A263 Copper-transporting ATPase; hydrolase, P-type ATPa 97.98
3a1c_A287 Probable copper-exporting P-type ATPase A; ATP-bin 98.14
3skx_A280 Copper-exporting P-type ATPase B; P1B-ATPase, ATP 96.84
1svj_A156 Potassium-transporting ATPase B chain; alpha-beta 91.41
4fe3_A297 Cytosolic 5'-nucleotidase 3; substrate complex, HA 90.42
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Back     alignment and structure
Probab=100.00  E-value=6.8e-80  Score=707.74  Aligned_cols=547  Identities=53%  Similarity=0.807  Sum_probs=447.8

Q ss_pred             ChhhhcCCHHHHHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Q 008694            1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALING   80 (557)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (557)
                      |++||.+++++++++|++++.+||+++|+++|+++||+|+++.++++++|+++++||+++++.++++++++++++++...
T Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~   81 (995)
T 3ar4_A            2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE   81 (995)
T ss_dssp             CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cchhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            89999999999999999999999999999999999999999998888999999999999999999999999998876542


Q ss_pred             -CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCe--EEEeeCCCcCCCcEEEEcCCCccc
Q 008694           81 -ETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGC--FSILPAAELVPGDIVEVNVGCKIP  157 (557)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~--~~~i~~~~l~~GDIv~l~~g~~vP  157 (557)
                       ......|+++++++++++++..++.++++++++.+++++++.+++++|+|||+  .++|++++|+|||||.|++||+||
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IP  161 (995)
T 3ar4_A           82 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP  161 (995)
T ss_dssp             SSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCC
T ss_pred             cccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCccc
Confidence             11234677888888888999999999999999999999999999999999887  699999999999999999999999


Q ss_pred             cceEEeeecCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhc
Q 008694          158 ADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSML  237 (557)
Q Consensus       158 aD~ill~~~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~  237 (557)
                      |||+|++..+++|.||||+|||||.|+.|.+++....+....+++|++|+||.+.+|++.++|++||.+|.+|++.+.+.
T Consensus       162 aD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~~~~  241 (995)
T 3ar4_A          162 ADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA  241 (995)
T ss_dssp             SEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEECTTCEEEECEEEEEEEECGGGSHHHHHHHHHH
T ss_pred             ccEEEEEEeeceEEEEcccccCCCcceeccccccCCcccCcccccceEecCCEEEcceEEEEEEEcCcchHHHHHHHHhh
Confidence            99999876678999999999999999999988654445556677899999999999999999999999999999999999


Q ss_pred             ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-cchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 008694          238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHG-GFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLA  316 (557)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~  316 (557)
                      .++.+++|+++.+++++.++..+++++++++|+++...+.+.... .|+..+...|..++++++++||++||+++++++.
T Consensus       242 ~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~l~v~aiP~~Lp~~vt~~la  321 (995)
T 3ar4_A          242 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA  321 (995)
T ss_dssp             TCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSSSCHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence            988999999999999999999988888888877654323221111 2444455567788999999999999999999999


Q ss_pred             HHHHHHHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEecccccCc-ceeeeeeeccccCCCCccccCCC
Q 008694          317 LGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGP-IIAEYGVTGTTYAPEGVVFDSSG  395 (557)
Q Consensus       317 ~~~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  395 (557)
                      +++.+|+++|+++|+++++|+||++++||||||||||+|+|+|++++..+..+..+ ....+..++..++|.+.......
T Consensus       322 ~~~~~ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  401 (995)
T 3ar4_A          322 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDK  401 (995)
T ss_dssp             HHHHHHHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEEEEEETTEEEEEEEEECCSSSSSCCCEEETTE
T ss_pred             HHHHHhccCCcEeccchhhhhhcCceEEEecCCCCcccCceEEEEEEecCcccCcccccceeeccCCCcCCccccccccc
Confidence            99999999999999999999999999999999999999999999998865432110 11123345555666533221100


Q ss_pred             ccccCCCChHHHHHHHHHhcccccceeeccCCCCcceecCChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhccccccc
Q 008694          396 IQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH  475 (557)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~lC~~~~~~~~~~~~~~~~~~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  475 (557)
                        .......+.+..++.++++||++.+..+++...+...|+|+|.|++.++++.|+ +... ...+......   ..+..
T Consensus       402 --~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~~~~~~~g~p~E~Al~~~a~~~g~-~~~~-~~~i~~~~~~---~~~~~  474 (995)
T 3ar4_A          402 --PIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-FNTE-VRNLSKVERA---NACNS  474 (995)
T ss_dssp             --ECCGGGCHHHHHHHHHHHHSCCCEEEEETTTTEEEEESCHHHHHHHHHHHHHCT-TCCC-CTTSCTTTST---THHHH
T ss_pred             --cccccccHHHHHHHHHHHHcCCCcccccCCCCceeecCCccHHHHHHHHHHcCC-cccc-cccccccccc---ccchh
Confidence              001112345677888999999988765544555667799999999999999887 2111 0000000000   00000


Q ss_pred             ccccccceeeeecCCccCceEEEEEeeCC------eEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHH
Q 008694          476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQ------MCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNR  549 (557)
Q Consensus       476 ~~~~~~~il~~~~F~s~rk~mSVvv~~~~------~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~  549 (557)
                      ..+..|++++++||+|+||||||+++.++      +..+|+|||||.|+++|+++..  ++...+++++.|+++.+++++
T Consensus       475 ~~~~~~~~~~~~pF~s~rk~msvi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~~--~~~~~~l~~~~~~~~~~~~~~  552 (995)
T 3ar4_A          475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRV--GTTRVPMTGPVKEKILSVIKE  552 (995)
T ss_dssp             HHHHHEEEEEEEEEETTTTEEEEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEEE--TTEEEECCHHHHHHHHHHHHH
T ss_pred             hhhhhCceEEEeecCCCCCeeEEEEecCCCCccccceEEEEcCCHHHHHHhcchhhc--CCCcccCCHHHHHHHHHHHHH
Confidence            12467899999999999999999999743      4789999999999999999875  567889999999999999999


Q ss_pred             H--Hhhhcc
Q 008694          550 L--DNSILY  556 (557)
Q Consensus       550 ~--~~~gl~  556 (557)
                      |  +++|+.
T Consensus       553 ~~~a~~GlR  561 (995)
T 3ar4_A          553 WGTGRDTLR  561 (995)
T ss_dssp             HHHSTTCCE
T ss_pred             HHhhhccce
Confidence            9  899973
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Back     alignment and structure
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Back     alignment and structure
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli} Back     alignment and structure
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A* Back     alignment and structure
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Back     alignment and structure
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* Back     alignment and structure
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A* Back     alignment and structure
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 557
d1wpga3239 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryc 2e-39
d1wpga4472 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP 5e-31
d1wpga4472 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP 7e-30
d1wpga1115 b.82.7.1 (A:125-239) Calcium ATPase, transduction 3e-25
d1q3ia_214 d.220.1.1 (A:) Sodium/potassium-transporting ATPas 1e-17
d1qyia_ 380 c.108.1.13 (A:) Hypothetical protein MW1667 (SA154 1e-09
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 239 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Calcium ATPase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  141 bits (357), Expect = 2e-39
 Identities = 78/204 (38%), Positives = 104/204 (50%), Gaps = 16/204 (7%)

Query: 357 MSVAKICVVHSVQQGPI-IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
           MSV K+ ++  V      + E+ +TG+TYAPEG V  +   +     Q   L+ +A   A
Sbjct: 1   MSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATICA 58

Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
           LCN+S L +N  KG YEK+GEATE AL  L EK+         + +  LSK ERA+ CN 
Sbjct: 59  LCNDSSLDFNETKGVYEKVGEATETALTTLVEKMN-----VFNTEVRNLSKVERANACNS 113

Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQ------MCVMFSKGAPESVLSRCTNILCNDN 529
                 KK   LEFSRDRK MSV CS  +         MF KGAPE V+ RC  +     
Sbjct: 114 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTT 173

Query: 530 GFIVPMTANIRAELESRLNRLDNS 553
              VPMT  ++ ++ S +      
Sbjct: 174 --RVPMTGPVKEKILSVIKEWGTG 195
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Back     information, alignment and structure
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Back     information, alignment and structure
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115 Back     information, alignment and structure
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha chain {Pig (Sus scrofa) [TaxId: 9823]} Length = 214 Back     information, alignment and structure
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d1wpga4472 Calcium ATPase, transmembrane domain M {Rabbit (Or 99.95
d1wpga1115 Calcium ATPase, transduction domain A {Rabbit (Ory 99.94
d1wpga3239 Calcium ATPase {Rabbit (Oryctolagus cuniculus) [Ta 99.9
d1q3ia_214 Sodium/potassium-transporting ATPase alpha chain { 99.88
d1qyia_ 380 Hypothetical protein MW1667 (SA1546) {Staphylococc 96.71
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.95  E-value=8.9e-29  Score=259.69  Aligned_cols=249  Identities=57%  Similarity=0.854  Sum_probs=202.9

Q ss_pred             ChhhhcCCHHHHHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Q 008694            1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALING   80 (557)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (557)
                      |++||..+++|++++|+||+++|||++|+++|+++||+|+++.++++++|+.++++|++++.++++++++++++++....
T Consensus         1 m~~~h~~~~e~v~~~l~td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~   80 (472)
T d1wpga4           1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE   80 (472)
T ss_dssp             CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CcChhhCCHHHHHHHhCcCcccCcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987643


Q ss_pred             -CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccc
Q 008694           81 -ETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPAD  159 (557)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD  159 (557)
                       ......|+++++++++++++..++.++|+++++.++.+++..+..                         ..||++|+|
T Consensus        81 ~~~~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~~~-------------------------~~~~~~P~d  135 (472)
T d1wpga4          81 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAA-------------------------TEQDKTPLQ  135 (472)
T ss_dssp             TTSTTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSCCC-------------------------CCCCCCHHH
T ss_pred             ccccchhHhHhhhhhheeeeeeeEEeEEechHHHHHHHHhhhcccc-------------------------ccccCchHH
Confidence             344567889999999999999999999999999999998876543                         246677777


Q ss_pred             eEEeeecCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhccc
Q 008694          160 MRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQT  239 (557)
Q Consensus       160 ~ill~~~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~  239 (557)
                      .++.+                                                                           
T Consensus       136 ~~l~~---------------------------------------------------------------------------  140 (472)
T d1wpga4         136 QKLDE---------------------------------------------------------------------------  140 (472)
T ss_dssp             HHHHH---------------------------------------------------------------------------
T ss_pred             HHHHH---------------------------------------------------------------------------
Confidence            65531                                                                           


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 008694          240 EDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPS-HGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALG  318 (557)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~  318 (557)
                                   .+..+.....+++.+.+........... ...+.+.+...+..++++.++++|++||++++++++++
T Consensus       141 -------------~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~l~V~~iPEgLp~~vti~La~~  207 (472)
T d1wpga4         141 -------------FGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALG  207 (472)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHCCTTSSSCCSSSCSSSCGGGHHHHHHHHHHHHSCTTHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence                         1111112222223333333222222211 12234455667888999999999999999999999999


Q ss_pred             HHHHHhcCceeecchhhhhcccccEEEecCC--CccCCCccEEEEE
Q 008694          319 TKRMARLNAIVRSLPSVETLGCTTVICSDKT--GTLTTNMMSVAKI  362 (557)
Q Consensus       319 ~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKT--GTLT~n~m~v~~~  362 (557)
                      +++|+|+++++|+..++|++|+..+.|+|||  +|||.|.+++.-+
T Consensus       208 ~~rmak~~~lVr~L~avE~~g~~~~~~~~k~i~~~l~~n~~~v~~~  253 (472)
T d1wpga4         208 TRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIRYLISSNVGEVVCI  253 (472)
T ss_dssp             HHHHHTTTEEESCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchhhhHHHHHHHHHHHHHHhHHhhhhhhhhhHHHHHHH
Confidence            9999999999999999999999999999998  9999998877554
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha chain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure