Citrus Sinensis ID: 008696

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MDYSSQEESDISDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGNYR
ccccccccccccHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHccccccEEEEEccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccc
ccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccEEcccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEcccEEEEEEccccccccccccccHHHHHHHHcccccEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEEEHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccc
mdyssqeesdisdSEINEYLEKPyeelragkykvrvngtlrcpfcsgkkkqdykhkdllqhasgvgkgsanrSAKQKANHLALAKYLEVdlaggvdkpqrpvlpqpvnqnpeqedlyvwpWMGIIVNIVMETkdrgsfldsgywlkrfavfkpvevrifwneenptaQAVVKFNndwngfmqasdfekafdadhqgkrhwiarkespglriygwfaraddntsegpigeylrqegklrtvsDIVQEDAQSKIHVVAHLASkidmknedlSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTnigvkrlgeidpkpfqdacknkfpleEAQVEASTLCSLWQenlkatewhpfkiihvegnyr
mdyssqeesdisdseiNEYLEKPyeelragkykvrvngTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQrpvlpqpvnqnpeqedlyVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKrhwiarkespglriYGWFAraddntsegpigEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEqeklsceletkkkkldswskqlnkrealtererqkldadrqqndlrnNSLQlasmeqkkadENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELeskiddldeMESLNKTLIAkerqsndelQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQEnlkatewhpfkiihvegnyr
MDYssqeesdisdseineYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGNYR
***********************YEELRAGKYKVRVNGTLRCPFCSG*********************************LALAKYLEVDLAG*********************DLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADD******IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDM*******LQCKFN**************RLHYAFVE****************************************************************************************************************************************************************************************LIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVE****
*****************EYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQH*********************L********************************LYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWI****SPGLRIYGWFARADDNTSEGPIGEYL*********************************************************************************************************************************************************************************************************************************************************************************************************STLCSLWQENLKATEWHPFKIIHVEG***
************DSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHA*****************HLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGNYR
***********SDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAG*******************QEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEG***
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MDYSSQEESDISDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDEDDAAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGNYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
255572749637 conserved hypothetical protein [Ricinus 0.994 0.869 0.715 0.0
225446269633 PREDICTED: uncharacterized protein LOC10 0.994 0.875 0.693 0.0
225446267626 PREDICTED: uncharacterized protein LOC10 0.982 0.873 0.691 0.0
147859456633 hypothetical protein VITISV_021077 [Viti 0.994 0.875 0.688 0.0
356523342629 PREDICTED: uncharacterized protein LOC10 0.982 0.869 0.686 0.0
449443750632 PREDICTED: uncharacterized protein LOC10 0.991 0.873 0.687 0.0
356526254629 PREDICTED: uncharacterized protein LOC10 0.982 0.869 0.688 0.0
147767780626 hypothetical protein VITISV_028278 [Viti 0.940 0.837 0.628 0.0
224072703626 predicted protein [Populus trichocarpa] 0.982 0.873 0.670 0.0
296090296579 unnamed protein product [Vitis vinifera] 0.897 0.863 0.634 0.0
>gi|255572749|ref|XP_002527307.1| conserved hypothetical protein [Ricinus communis] gi|223533307|gb|EEF35059.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/559 (71%), Positives = 478/559 (85%), Gaps = 5/559 (0%)

Query: 1   MDYSSQEESDISDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQ 60
           M+YSS EESDIS+SEIN+Y EKPY EL++GKYKV+VNGTLRCPFC+GKKKQDYK+KDLLQ
Sbjct: 1   MEYSSDEESDISESEINDYKEKPYGELKSGKYKVKVNGTLRCPFCAGKKKQDYKYKDLLQ 60

Query: 61  HASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWP 120
           HA+GVGKGSANRSAKQKANH+ALA YLE DLA   D+  RP LP+PVN  P+Q DL+V P
Sbjct: 61  HATGVGKGSANRSAKQKANHVALAIYLENDLADESDQSHRPALPKPVNPTPQQVDLFVKP 120

Query: 121 WMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGF 180
           WMGI+VNIV E KD  +  D+ YWLK+FA +KP EV  FW+E   T QAV+KFN+DWNGF
Sbjct: 121 WMGIVVNIVTEGKDSNALHDNAYWLKKFAQYKPSEVSTFWSEHEQTGQAVLKFNDDWNGF 180

Query: 181 MQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTV 240
           M A++FEK+F+  H  K+ W  RK +PG  +YGW ARADD+ SEGPIG++LR++GKLRT+
Sbjct: 181 MNATEFEKSFETLHHSKKDWKERKTNPGSSMYGWCARADDHDSEGPIGDFLRKKGKLRTI 240

Query: 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE 300
           S IV+E  +S+  VVAHL++KID  N++L +LQ K+NE TMSLSRMLEEKD+LHYAF+EE
Sbjct: 241 SGIVEEATESRNSVVAHLSNKIDQTNKNLDDLQYKYNEKTMSLSRMLEEKDKLHYAFIEE 300

Query: 301 TRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360
           TRKMQR ARDNVRRILEEQE L+ ELE+KK+KLDSWSK+LNKREALTERERQKLD ++++
Sbjct: 301 TRKMQRHARDNVRRILEEQENLNDELESKKRKLDSWSKELNKREALTERERQKLDEEKKK 360

Query: 361 NDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDL 420
           ND +NNSLQLASMEQKKADENVLRLVEEQKREKEEAL+KILQLEKQLDAKQKLEMEIE+L
Sbjct: 361 NDDQNNSLQLASMEQKKADENVLRLVEEQKREKEEALNKILQLEKQLDAKQKLEMEIEEL 420

Query: 421 KGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEA 480
           KGKL+V+KHLGD+DDAAVQ+KMKEM DELE K +D  +ME+L+ TL+ KERQSNDELQ+A
Sbjct: 421 KGKLQVIKHLGDQDDAAVQRKMKEMADELEQKEEDFGDMENLHHTLVVKERQSNDELQDA 480

Query: 481 RRELIQGLSDLIGA--RTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQEN 538
           R+ELI GL D++ +  RTNIG+KR+GEID KPF + CK KFPLEEAQV+A+TLCSLWQEN
Sbjct: 481 RKELIAGLGDMLSSVVRTNIGIKRMGEIDQKPFLNTCKQKFPLEEAQVQATTLCSLWQEN 540

Query: 539 LKATEWHPFKII---HVEG 554
           LK + W PFKI+    VEG
Sbjct: 541 LKDSSWQPFKIVPDAEVEG 559

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446269|ref|XP_002267670.1| PREDICTED: uncharacterized protein LOC100252420 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225446267|ref|XP_002267381.1| PREDICTED: uncharacterized protein LOC100257549 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859456|emb|CAN83544.1| hypothetical protein VITISV_021077 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523342|ref|XP_003530299.1| PREDICTED: uncharacterized protein LOC100790829 [Glycine max] Back     alignment and taxonomy information
>gi|449443750|ref|XP_004139640.1| PREDICTED: uncharacterized protein LOC101205093 [Cucumis sativus] gi|449522628|ref|XP_004168328.1| PREDICTED: uncharacterized LOC101205093 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356526254|ref|XP_003531733.1| PREDICTED: uncharacterized protein LOC100798940 [Glycine max] Back     alignment and taxonomy information
>gi|147767780|emb|CAN62667.1| hypothetical protein VITISV_028278 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224072703|ref|XP_002303841.1| predicted protein [Populus trichocarpa] gi|222841273|gb|EEE78820.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296090296|emb|CBI40115.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2200487634 FDM1 "factor of DNA methylatio 0.951 0.835 0.577 3.8e-165
TAIR|locus:2126081635 FDM2 "AT4G00380" [Arabidopsis 0.951 0.834 0.572 4.5e-162
TAIR|locus:2825160634 FDM5 "factor of DNA methylatio 0.951 0.835 0.536 2e-152
TAIR|locus:2114560647 IDN2 "AT3G48670" [Arabidopsis 0.958 0.825 0.402 2.7e-107
TAIR|locus:2014754736 FDM4 "AT1G13790" [Arabidopsis 0.797 0.603 0.361 6.2e-93
TAIR|locus:2148323561 AT5G59390 [Arabidopsis thalian 0.777 0.771 0.317 3.3e-63
TAIR|locus:2125078554 AT4G01180 "AT4G01180" [Arabido 0.707 0.711 0.330 5.1e-58
MGI|MGI:1915428 1298 Cgnl1 "cingulin-like 1" [Mus m 0.472 0.202 0.254 8.3e-12
UNIPROTKB|D4A180 1221 Cgnl1 "Protein Cgnl1" [Rattus 0.472 0.215 0.247 1.2e-10
RGD|1304623 1292 Cgnl1 "cingulin-like 1" [Rattu 0.472 0.203 0.247 1.3e-10
TAIR|locus:2200487 FDM1 "factor of DNA methylation 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1607 (570.8 bits), Expect = 3.8e-165, P = 3.8e-165
 Identities = 307/532 (57%), Positives = 397/532 (74%)

Query:    19 YLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKA 78
             Y E PY  LR G YKV+VNG LRCPFC+GKKKQDYK+K+L  HA+GV KGSA RSA QKA
Sbjct:    18 YSETPYRLLRDGTYKVKVNGQLRCPFCAGKKKQDYKYKELYAHATGVSKGSATRSALQKA 77

Query:    79 NHLALAKYLEVDLAGGVDK-PQRPVLPQPVNQN-PEQEDLYVWPWMGIIVNIVMETKDRG 136
             NHLALA +LE +LAG  +  P+ PV+P  +++  P   ++YVWPWMGI+VN + E  D+ 
Sbjct:    78 NHLALAMFLENELAGYAEPVPRPPVVPPQLDETEPNPHNVYVWPWMGIVVNPLKEADDKE 137

Query:   137 SFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQG 196
               LDS YWL+  + FKP+EV  FW E++     + KFN DW+GF  A++ EK F+     
Sbjct:   138 LLLDSAYWLQTLSKFKPIEVNAFWVEQDSIVGVIAKFNGDWSGFAGATELEKEFETQGSS 197

Query:   197 KRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVA 256
             K+ W  R      + YGW ARADD  S+GPIGEYL +EG+LRTVSDI Q++ Q +  V+ 
Sbjct:   198 KKEWTERSGDSESKAYGWCARADDFESQGPIGEYLSKEGQLRTVSDISQKNVQDRNTVLE 257

Query:   257 HLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRIL 316
              L+  I M NEDL+++Q  +N T MSL R+L+EK  LH AF +ET+KMQ+++  ++++IL
Sbjct:   258 ELSDMIAMTNEDLNKVQYSYNRTAMSLQRVLDEKKNLHQAFADETKKMQQMSLRHIQKIL 317

Query:   317 EEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQK 376
              ++EKLS EL+ K + L+S +KQL K EALTE +RQKLD D++++D  N SLQLAS EQK
Sbjct:   318 YDKEKLSNELDRKMRDLESRAKQLEKHEALTELDRQKLDEDKRKSDAMNKSLQLASREQK 377

Query:   377 KADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDA 436
             KADE+VLRLVEE +R+KE+AL+KIL LEKQLD KQ LEMEI++LKGKL+VMKHLGD+DD 
Sbjct:   378 KADESVLRLVEEHQRQKEDALNKILLLEKQLDTKQTLEMEIQELKGKLQVMKHLGDDDDE 437

Query:   437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGART 496
             AVQKKMKEMNDEL+ K  +L+ +ES+N  L+ KERQSNDE+Q AR++LI GL+ L+GA T
Sbjct:   438 AVQKKMKEMNDELDDKKAELEGLESMNSVLMTKERQSNDEIQAARKKLIAGLTGLLGAET 497

Query:   497 NIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFK 548
             +IGVKR+GE+D KPF D CK ++   EA VEA+TLCS WQENLK   W PFK
Sbjct:   498 DIGVKRMGELDEKPFLDVCKLRYSANEAAVEAATLCSTWQENLKNPSWQPFK 549
GO:0005737 "cytoplasm" evidence=ISM
GO:0009506 "plasmodesma" evidence=IDA
GO:0003725 "double-stranded RNA binding" evidence=IDA
GO:0080188 "RNA-directed DNA methylation" evidence=IGI
GO:0003677 "DNA binding" evidence=IDA
GO:0003723 "RNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043621 "protein self-association" evidence=IPI
TAIR|locus:2126081 FDM2 "AT4G00380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825160 FDM5 "factor of DNA methylation 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114560 IDN2 "AT3G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014754 FDM4 "AT1G13790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148323 AT5G59390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125078 AT4G01180 "AT4G01180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1915428 Cgnl1 "cingulin-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|D4A180 Cgnl1 "Protein Cgnl1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1304623 Cgnl1 "cingulin-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001525001
SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (633 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
pfam03468116 pfam03468, XS, XS domain 4e-35
cd12266107 cd12266, RRM_like_XS, RNA recognition motif-like X 9e-28
pfam0347043 pfam03470, zf-XS, XS zinc finger domain 4e-20
pfam03469132 pfam03469, XH, XH domain 9e-12
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-09
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-06
pfam01496 707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 9e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-05
pfam09726680 pfam09726, Macoilin, Transmembrane protein 9e-05
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 9e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-04
pfam09726680 pfam09726, Macoilin, Transmembrane protein 1e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 4e-04
PRK01156 895 PRK01156, PRK01156, chromosome segregation protein 4e-04
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 9e-04
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 9e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
PRK01156 895 PRK01156, PRK01156, chromosome segregation protein 0.002
pfam04156186 pfam04156, IncA, IncA protein 0.002
pfam04124339 pfam04124, Dor1, Dor1-like family 0.002
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.003
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.003
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.004
PRK01156 895 PRK01156, PRK01156, chromosome segregation protein 0.004
>gnl|CDD|217578 pfam03468, XS, XS domain Back     alignment and domain information 
 Score =  127 bits (321), Expect = 4e-35
 Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 113 QEDLYVWPWMGIIVNIVMETKD--RGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAV 170
           QE+ YVWPWMGI+VN+  E K   RG          R + F P++V+  WN E  T  A+
Sbjct: 1   QEEKYVWPWMGILVNVPTEKKKDGRGVGESGATLRDRLSRFNPLKVKPLWNREGHTGFAI 60

Query: 171 VKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPI 227
           VKF  DW+GF  A  FEK F+    GK+ W+AR+     ++YGW ARADD  S G +
Sbjct: 61  VKFAKDWSGFRDALRFEKHFEKQGHGKKDWLARRG-QDSKLYGWVARADDYNSPGLV 116

The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition. Length = 116
>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants Back     alignment and domain information
>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain Back     alignment and domain information
>gnl|CDD|217579 pfam03469, XH, XH domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|217933 pfam04156, IncA, IncA protein Back     alignment and domain information
>gnl|CDD|217912 pfam04124, Dor1, Dor1-like family Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
PF03468116 XS: XS domain; InterPro: IPR005380 The XS (rice ge 100.0
PF03469132 XH: XH domain; InterPro: IPR005379 The XH (rice ge 99.89
PF0347043 zf-XS: XS zinc finger domain; InterPro: IPR005381 99.76
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.07
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.94
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.74
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.55
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.44
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.42
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.38
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.36
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.1
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.95
PRK11637428 AmiB activator; Provisional 95.62
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.58
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.53
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 95.38
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.36
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.34
PRK11637428 AmiB activator; Provisional 95.26
PF15066527 CAGE1: Cancer-associated gene protein 1 family 95.25
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 95.12
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 94.66
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.65
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.55
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 94.39
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 94.04
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 93.78
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.67
PHA02562562 46 endonuclease subunit; Provisional 93.66
PRK02224 880 chromosome segregation protein; Provisional 93.1
PRK09039343 hypothetical protein; Validated 92.83
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.74
KOG05791187 consensus Ste20-like serine/threonine protein kina 92.65
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 92.36
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 92.31
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 92.24
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 92.2
KOG0933 1174 consensus Structural maintenance of chromosome pro 91.92
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 91.8
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 91.75
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.42
KOG0971 1243 consensus Microtubule-associated protein dynactin 91.34
KOG0933 1174 consensus Structural maintenance of chromosome pro 90.06
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 90.02
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 87.99
KOG1937521 consensus Uncharacterized conserved protein [Funct 87.98
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 87.91
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 87.73
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 87.67
KOG4572 1424 consensus Predicted DNA-binding transcription fact 87.66
PRK04863 1486 mukB cell division protein MukB; Provisional 87.13
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 86.62
PF05701522 WEMBL: Weak chloroplast movement under blue light; 86.57
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 86.29
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 86.27
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 85.43
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 85.42
PF13851201 GAS: Growth-arrest specific micro-tubule binding 84.47
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 84.28
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 83.78
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 83.76
KOG0971 1243 consensus Microtubule-associated protein dynactin 83.61
PRK03918 880 chromosome segregation protein; Provisional 82.19
KOG0249 916 consensus LAR-interacting protein and related prot 82.05
PF05010207 TACC: Transforming acidic coiled-coil-containing p 81.58
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 81.46
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 80.79
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 80.2
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 80.03
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT Back     alignment and domain information 
Probab=100.00  E-value=1.9e-46  Score=337.00  Aligned_cols=114  Identities=46%  Similarity=0.845  Sum_probs=87.0

Q ss_pred             CCceeeecceEEEEecccccc-CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhh
Q 008696          113 QEDLYVWPWMGIIVNIVMETK-DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAF  190 (557)
Q Consensus       113 ~de~iVWPwmgIi~Ni~~e~~-dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~F  190 (557)
                      +|++|||||||||+||+|+++ +|+++|+|++.|++ |+.|+|.+|+||||+.||+|+|||+|++||+||+||++||+||
T Consensus         1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F   80 (116)
T PF03468_consen    1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF   80 (116)
T ss_dssp             ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence            589999999999999999986 99999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCch
Q 008696          191 DADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPI  227 (557)
Q Consensus       191 e~~~~GRkdW~~~~~~~~~~LYGW~AradD~~~~~~i  227 (557)
                      +.+||||+||.+++.. +++||||||++|||++.|||
T Consensus        81 ~~~~~Gr~dW~~~~~~-~~~lYGw~A~~dD~~~~~~i  116 (116)
T PF03468_consen   81 EAQGHGRKDWERRRGG-GSQLYGWVARADDYNSPGPI  116 (116)
T ss_dssp             HHTT-SHHHHT-SSS----S-EEEE-BHHHHHSSSHH
T ss_pred             HHcCCCHHHHhhccCC-CCceeeeeCchhhccCCCCC
Confidence            9999999999998765 89999999999999999986

SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT Back     alignment and domain information
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
4e8u_A172 Crystal Structure Of Arabidopsis Idn2 Xs Domain Alo 1e-25
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With A Small Segment Of Adjacent Coiled-Coil Region Length = 172 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 118 VWPWMGIIVNI-VMETKDRGSFLDSGYWLKRFAV---FKPVEVRIFWNEENPTAQAVVKF 173
           V+PW GI+VNI   + +D  S  +SG  L+   +   F P  VR  WN    +  A+V+F
Sbjct: 10  VYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEF 69
Query: 174 NNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQ 233
           N DWNG      F+KA+  D  GK+ W+ +K+ P L +YGW ARADD      IGE LR+
Sbjct: 70  NKDWNGLHNGLLFDKAYTVDGHGKKDWL-KKDGPKLGLYGWIARADDYNGNNIIGENLRK 128
Query: 234 EGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQ 273
            G L+T++++ +E+A+ +  +V +L   ++ K +D+ E++
Sbjct: 129 TGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIE 168

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 6e-49
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-08
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 5e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 7e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 5e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 8e-04
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172 Back     alignment and structure
 Score =  166 bits (421), Expect = 6e-49
 Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 111 PEQEDLYVWPWMGIIVNIVMETKDRGSFL-DSGYWLK---RFAVFKPVEVRIFWNEENPT 166
            + ++  V+PW GI+VNI       G    +SG  L+       F P  VR  WN    +
Sbjct: 3   CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHS 62

Query: 167 AQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGP 226
             A+V+FN DWNG      F+KA+  D  GK+ W+ +   P L +YGW ARADD      
Sbjct: 63  GTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKD-GPKLGLYGWIARADDYNGNNI 121

Query: 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFN 277
           IGE LR+ G L+T++++ +E+A+ +  +V +L   ++ K +D+ E++   +
Sbjct: 122 IGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEELCS 172
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 100.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.48
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.26
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.05
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.48
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 92.32
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.28
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.28
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 89.4
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 88.64
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 87.8
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.28
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.17
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 86.72
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 86.38
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 85.7
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 84.49
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 84.44
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 84.27
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 84.11
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 83.44
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 83.12
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 82.63
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 82.58
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 82.52
2db1_A118 Heterogeneous nuclear ribonucleoprotein F; RRM dom 82.43
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 82.25
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 81.83
2hgn_A139 Heterogeneous nuclear ribonucleoprotein F; RNA rec 81.11
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 80.6
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 80.43
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1e-65  Score=486.06  Aligned_cols=167  Identities=35%  Similarity=0.698  Sum_probs=158.5

Q ss_pred             CCCCCceeeecceEEEEeccc-cccCCccccCChhhHhh-h--cccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696          110 NPEQEDLYVWPWMGIIVNIVM-ETKDRGSFLDSGYWLKR-F--AVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD  185 (557)
Q Consensus       110 ~~~~de~iVWPwmgIi~Ni~~-e~~dg~~~G~s~~~L~~-~--~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~  185 (557)
                      .++++++|||||||||+|||| +.+||+++|+|+++|++ |  ++|+|++|+||||++||+|+|||+|++||+||+||++
T Consensus         2 ~~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~   81 (172)
T 4e8u_A            2 DCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL   81 (172)
T ss_dssp             ----CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred             CCCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence            368899999999999999999 56799999999999999 8  8999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhh
Q 008696          186 FEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMK  265 (557)
Q Consensus       186 fek~Fe~~~~GRkdW~~~~~~~~~~LYGW~AradD~~~~~~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~k  265 (557)
                      ||+||+.+||||+||.+++++ +++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++|
T Consensus        82 fek~Fe~~~~GK~dW~~~~~~-~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~k  160 (172)
T 4e8u_A           82 FDKAYTVDGHGKKDWLKKDGP-KLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEK  160 (172)
T ss_dssp             HHHHHHHTTCSHHHHTCSSSC-CCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHhhCCCC-CCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987666 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhh
Q 008696          266 NEDLSELQCKFN  277 (557)
Q Consensus       266 n~~l~elE~k~~  277 (557)
                      |+||++||++||
T Consensus       161 n~~l~ele~k~~  172 (172)
T 4e8u_A          161 KKDMKEIEELCS  172 (172)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhC
Confidence            999999999997
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 94.52
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 92.95
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 90.94
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 89.62
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 88.76
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 87.27
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 86.14
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 85.94
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 85.62
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 85.17
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 85.15
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 83.07
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 81.13
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 80.46
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 80.41
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.52  E-value=0.026  Score=43.56  Aligned_cols=59  Identities=14%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 008696          122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA  189 (557)
Q Consensus       122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~  189 (557)
                      ++.|-|+|.        ..+...|++ |+.|.++. |+...++.+++|+|.|+|. +-..-..|+.++.+
T Consensus         2 tv~V~nlp~--------~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~-~~~~a~~Al~~~~~   62 (75)
T d2ghpa2           2 TVLVKNLPK--------SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFA-RYDGALAAITKTHK   62 (75)
T ss_dssp             EEEEEEECT--------TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEES-SHHHHHHHHTTTTC
T ss_pred             EEEEECCCC--------CCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEc-chHHhHHHHHhcCc
Confidence            578899975        457889999 99998765 6666789999999999995 46666777776554
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure