Citrus Sinensis ID: 008705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
Protein Sequence
MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHcHcHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHccc
Coil and Loop (DISEMBL)
MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVgieqdpakytptntrfqrgsssirrrfrtnditstpvagvsyvstpvmeedevedsdFYLLAKSYFDCREYRRAAHVLrdqtgrrsVFLRCYALYLAGEKRKEEEMIelegplgksnaVNRELISLERELStswkngtvdpfgLYLYGIVLKDKGNENLARTVFVESVnsypwnwnAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELlrndpyrvddmdmYSNVLYAKECFSALSYLAHRVfmtdkyrpescciignyyslkgqheKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAvdinprdyrAWYGLGQAYEMMHMPLYALHYFrksvflqpndSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLldytgpvsfthlknl
Flexible Loop (DISEMBL)
MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGieqdpakytptntrfqrgsssirrrfrtnditstpvagvsyvstpvmeedevedSDFYLLAKSYFDCREYRRAAHvlrdqtgrrsvfLRCYALYLAgekrkeeemielegplgksnavNRELISLERElstswkngtvdpFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEellrndpyrvDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDytgpvsfthlknl
Low Complexity Region (SEG)
MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGekrkeeemieleGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDIlnslnlnnHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL
Disordered region (IsUnstruct)
**************IRQLSNRCLYSAAKWAAEQLVGIE****************************ITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGE*********************RELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL************MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT*****
Disordered Region (DISOPRED)
****ESC*NELRSAIRQLSNRCLYSAAKWAAEQLVGIEQD***************************************TPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS*THLKNL
Disordered Region (DISEMBL)
***********RSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL
Disordered Region (DISPRO)
*SSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQ********************************VAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	557	2.2.26 [Sep-21-2011]
Q9STS3	579	Anaphase-promoting comple	yes	no	0.983	0.946	0.8	0.0
Q9UJX2	597	Cell division cycle prote	yes	no	0.771	0.720	0.489	1e-115
A1A4R8	597	Cell division cycle prote	yes	no	0.748	0.698	0.505	1e-115
Q8BGZ4	597	Cell division cycle prote	yes	no	0.750	0.700	0.501	1e-115
Q86B11	592	Anaphase-promoting comple	yes	no	0.667	0.628	0.501	1e-102
O94556	565	Anaphase-promoting comple	yes	no	0.908	0.895	0.408	1e-102
P16522	626	Anaphase-promoting comple	yes	no	0.913	0.813	0.311	2e-70
A7Z061	825	Cell division cycle prote	no	no	0.457	0.309	0.318	9e-30
P30260	824	Cell division cycle prote	no	no	0.457	0.309	0.318	1e-29
A2A6Q5	825	Cell division cycle prote	no	no	0.457	0.309	0.315	1e-29

>sp|Q9STS3|CDC23_ARATH Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/550 (80%), Positives = 495/550 (90%), Gaps = 2/550 (0%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           M SKE CRNE+R+AIRQLS+RCLYSAAKWA EQLVGIEQDP+ +TP NTRFQRGSSSIRR
Sbjct: 1   MVSKECCRNEIRAAIRQLSDRCLYSAAKWAGEQLVGIEQDPSNFTPANTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPV--AGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTG 118
           RF TN+  STP+   G S  +TP+ EEDE  D D YLLAKSYFDCREYRRA+H+LRDQ  
Sbjct: 61  RFSTNESISTPLPSVGFSQAATPLPEEDEAIDGDIYLLAKSYFDCREYRRASHMLRDQVS 120

Query: 119 RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFG 178
           ++S+FLR YALYLAGEKRKEEEMIELEGPLGKS+A+NREL+SLER+LS   + G +D FG
Sbjct: 121 KKSLFLRYYALYLAGEKRKEEEMIELEGPLGKSDAINRELVSLERDLSALRRTGAIDSFG 180

Query: 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD 238
           LYLYG+VLK+KGNE+LAR   VESVNSYPWNW+AWSEL+SLCTSI+ILNSLNLNNHWMK+
Sbjct: 181 LYLYGVVLKEKGNESLARASLVESVNSYPWNWSAWSELQSLCTSIEILNSLNLNNHWMKE 240

Query: 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
           +FL +AYQELRMH ESL KYEYLQG FSFSNYIQAQ AKAQYSLREF+QVE++FEELLRN
Sbjct: 241 FFLGNAYQELRMHTESLAKYEYLQGIFSFSNYIQAQTAKAQYSLREFDQVEIMFEELLRN 300

Query: 299 DPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVV 358
           DPYRV+DMD+YSNVLYAKE  +ALSYLAH+VF+TDKYRPESCCIIGNYYSLKGQHEK+V+
Sbjct: 301 DPYRVEDMDLYSNVLYAKEACAALSYLAHKVFLTDKYRPESCCIIGNYYSLKGQHEKAVM 360

Query: 359 YFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM 418
           YFRRALKL+K YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP DYRAWYGLGQAYEMM
Sbjct: 361 YFRRALKLNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPTDYRAWYGLGQAYEMM 420

Query: 419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
            MP YALHYFRKS+F  PNDSRLWIAMA+CY+TEQL+MLEEAIKCY+RA NC D+E IAL
Sbjct: 421 GMPFYALHYFRKSIFFLPNDSRLWIAMAKCYQTEQLYMLEEAIKCYKRAVNCTDTEGIAL 480

Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538
           NQLAKLH  LGR+EEAA+Y++KDLERM+AE  EGPNM EAL+FLATH + H +FEEAEVY
Sbjct: 481 NQLAKLHQKLGRNEEAAYYFEKDLERMDAEGLEGPNMFEALVFLATHFKNHKKFEEAEVY 540

Query: 539 CTRLLDYTGP 548
           CTRLLDY+GP
Sbjct: 541 CTRLLDYSGP 550

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9UJX2|CDC23_HUMAN Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/435 (48%), Positives = 295/435 (67%), Gaps = 5/435 (1%)

Query: 67  ITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRC 126
           + + P+A +     P + E++ +D D Y LAK+YFD +EY RAAH L     +++ FL  
Sbjct: 62  LPALPLAELQ--PPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYM 119

Query: 127 YALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVL 186
           Y+ YL+GEK+K++E ++  GPL K    N  L  L  ELS   +   +D FGLYLYG+VL
Sbjct: 120 YSRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVL 179

Query: 187 KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQ 246
           +       A  VFVE+ +  P +W AW EL +L T  ++L  L+L + WMK++FLA  Y 
Sbjct: 180 RKLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYT 239

Query: 247 ELRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDD 305
           EL++ +E+L KY+ L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++
Sbjct: 240 ELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIEN 299

Query: 306 MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK 365
           MD +SN+LY +   S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALK
Sbjct: 300 MDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALK 359

Query: 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYAL 425
           L+  YL AWTLMGHEY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L
Sbjct: 360 LNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCL 419

Query: 426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485
           +Y+R++  L+PNDSR+ +A+ +CY  E+L+ L EA KCY RA    D E +AL +LAKLH
Sbjct: 420 YYYRRAHQLRPNDSRMLVALGECY--EKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLH 477

Query: 486 HALGRDEEAAFYYKK 500
             L   E+AA  Y K
Sbjct: 478 EQLTESEQAAQCYIK 492

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|A1A4R8|CDC23_BOVIN Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1

 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/421 (50%), Positives = 289/421 (68%), Gaps = 4/421 (0%)

Query: 81  PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEE 140
           P+ EED  +D D Y LAK+YFD +EY RAAH L     +++ FL  Y+ YL+GEK+K++E
Sbjct: 75  PITEED-AQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDE 133

Query: 141 MIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
            ++  GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+       A  VFV
Sbjct: 134 TVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFV 193

Query: 201 ESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEY 260
           E+ +  P +W AW EL +L T  ++L  L+L + WMK++FLA  Y EL++ +E+L KY+ 
Sbjct: 194 EATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQN 253

Query: 261 LQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
           L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++MD +SN+LY +   
Sbjct: 254 LIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMK 313

Query: 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
           S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+  YL AWTLMGH
Sbjct: 314 SELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGH 373

Query: 380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
           EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+Y+R++  L+PNDS
Sbjct: 374 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDS 433

Query: 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
           R+ +A+ +CY  E+L+ L EA KCY RA    D E +AL +LAKLH  L   E+AA  Y 
Sbjct: 434 RMLVALGECY--EKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCYI 491

Query: 500 K 500
           K
Sbjct: 492 K 492

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Bos taurus (taxid: 9913)

>sp|Q8BGZ4|CDC23_MOUSE Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/421 (50%), Positives = 289/421 (68%), Gaps = 3/421 (0%)

Query: 81  PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEE 140
           P + E++ +D D Y LAK+YFD +EY RAAH L     +++ FL  Y+ YL+GEK+K++E
Sbjct: 74  PPLTEEDAQDVDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDE 133

Query: 141 MIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
            ++  GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+       A  VFV
Sbjct: 134 TVDSLGPLEKGQVKNEALRELRVELSRKHQARGLDGFGLYLYGVVLRKLDLVKEAIDVFV 193

Query: 201 ESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEY 260
           E+ +  P +W AW EL +L T  ++L  L+L + WMK++FLA  Y EL++ +E+L KY++
Sbjct: 194 EATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQH 253

Query: 261 LQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
           L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++MD +SN+LY +   
Sbjct: 254 LIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMK 313

Query: 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
           S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+  YL AWTLMGH
Sbjct: 314 SELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGH 373

Query: 380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
           EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+Y+R++  L+PNDS
Sbjct: 374 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDS 433

Query: 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
           R+ +A+ +CY  E+L+ L EA KCY RA    D E  AL +LAKLH  L   E+AA  Y 
Sbjct: 434 RMLVALGECY--EKLNQLVEAKKCYWRAYAVGDVEKKALVKLAKLHEQLTESEQAAQCYI 491

Query: 500 K 500
           K
Sbjct: 492 K 492

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|Q86B11|CDC23_DICDI Anaphase-promoting complex subunit 8 OS=Dictyostelium discoideum GN=anapc8 PE=3 SV=1

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/377 (50%), Positives = 272/377 (72%), Gaps = 5/377 (1%)

Query: 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSI-DILNSLNLN 232
           +D F LY Y ++LK + +  +AR V +ESV+ YP NW+AWS+L SLC+   DI+  L+L 
Sbjct: 194 MDGFLLYFYSMLLKKQRDFTMARKVLIESVHKYPCNWSAWSDLSSLCSDSADIIMQLSLP 253

Query: 233 NHWMKDYFLASAYQELRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVI 291
           +H+MKD+FLA    EL+ + ESL  Y+ L  T F+ S YI AQ A   Y+LR ++  E +
Sbjct: 254 DHFMKDFFLAHFKLELQQNNESLVIYQQLSRTLFTQSTYILAQTAIGNYNLRAYDIGEEL 313

Query: 292 FEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG 351
           FE L+  +P R++++D+YSN+LY ++  ++LS LAH+    +KY PE+CCIIGNYYSLK 
Sbjct: 314 FERLIELEPNRLENIDIYSNILYVRDKKASLSMLAHKAMKIEKYCPETCCIIGNYYSLKL 373

Query: 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411
           +H+K+++YF+RALKL+  YLSAWTL+GHE++E+KN  AAI+AYR+AVDINPRDYRAWYGL
Sbjct: 374 EHDKAILYFQRALKLNDRYLSAWTLIGHEFLEIKNVSAAINAYRKAVDINPRDYRAWYGL 433

Query: 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471
           GQ Y+++ +PLY+L+YF+K+  L+P D R+W A   CYE   +  + EAIKCY RA    
Sbjct: 434 GQTYQLLKLPLYSLYYFKKATTLRPYDPRMWCAAGGCYEF--IERIPEAIKCYERAEENY 491

Query: 472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR 531
           D E +A+N+LAKL+  +  +E+AAFYYKK+L   + E+ +G  +++AL+FLA   +   +
Sbjct: 492 DRERVAINKLAKLYQEIQNNEKAAFYYKKNLYYCDQEKIDGQEIIDALLFLANFYKNQNQ 551

Query: 532 FEEAEVYCTRLLDYTGP 548
             ++E YC RLLDY GP
Sbjct: 552 -TQSEQYCLRLLDYAGP 567

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|O94556|APC8_SCHPO Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/549 (40%), Positives = 313/549 (57%), Gaps = 43/549 (7%)

Query: 8   RNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDI 67
           RN L   I + S R L  A +WAAE L G+     ++ P                     
Sbjct: 24  RNCLLKCISECSERGLVYAVRWAAEMLNGMNPIEMEHIP--------------------F 63

Query: 68  TSTPVAGVSYVSTPVMEED---EVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFL 124
           +STP     +   P M  +   EVE+ + YLLAKSYFDC+E+ RAA+ L++    +S+FL
Sbjct: 64  SSTPTG--EFDLDPDMANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFL 121

Query: 125 RCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGI 184
           R Y+ YLAGEK+ EEE   L       ++ NRE   +   L +    G  DP+ LYL G+
Sbjct: 122 RLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGV 181

Query: 185 VLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNL------NNHWMKD 238
           V + +  ++ A       V   P+ W+AW EL     SID L +L        + H M  
Sbjct: 182 VYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELS---LSIDSLETLTTVVSQLPSTHIMTK 238

Query: 239 YFLASAYQELRMHKESLTKYEYL---QGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEEL 295
            F   A  EL  H+ + + YE L   +  F  S Y++ Q A   Y  R+F++ E +FE +
Sbjct: 239 IFYVYASHEL--HQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRDFDEAESLFENI 296

Query: 296 LRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEK 355
           L NDPYR+DDMD YSNVL+  E  S L +LA      DK+RPE+C IIGNYYSL  +HEK
Sbjct: 297 LTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKFRPETCSIIGNYYSLLSEHEK 356

Query: 356 SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY 415
           +V YF+RAL+L++NYLSAWTLMGHEYVE+KNT AAI++YR AVD+N +DYRAWYGLGQ Y
Sbjct: 357 AVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGLGQTY 416

Query: 416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475
           E++ M  YAL+YF+++  L+P D R+W A+  CY  E++   +EAIK Y+RA   + + +
Sbjct: 417 EVLDMHFYALYYFQRATALRPYDQRMWQALGNCY--EKIDRPQEAIKSYKRALLGSQTNS 474

Query: 476 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
             L +L  L+  L     AA  YK+ ++  E E    P  ++A I+LA        + EA
Sbjct: 475 SILVRLGNLYEELQDLNSAASMYKQCIKTEETE--ISPETIKARIWLARWELGKKNYREA 532

Query: 536 EVYCTRLLD 544
           E+Y + +L+
Sbjct: 533 ELYLSEVLN 541

Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Has a role in promoting metaphase to anaphase transition via the ubiquitination of specific mitotic substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P16522|CDC23_YEAST Anaphase-promoting complex subunit CDC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC23 PE=1 SV=1

 Score =  267 bits (683), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 190/609 (31%), Positives = 304/609 (49%), Gaps = 100/609 (16%)

Query: 8   RNELRSAIRQLSNRCLYSAAKWAAEQL------VGIEQDPAKYTPTNTRFQRGSSSIRRR 61
           R +LR A  +LS   LY ++KWAAE L      + ++Q  +    +  R ++G       
Sbjct: 14  RIQLRKAATELSRWKLYGSSKWAAEALAGLAEAIDVDQTHSLADESPLRNKQGVPK---- 69

Query: 62  FRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRS 121
                +   P  G     T         + D YLL  + FD +E+ R    L+D T    
Sbjct: 70  ----QMFEIPQNGFGLSET---------EYDLYLLGSTLFDAKEFDRCVFFLKDVTNPYL 116

Query: 122 VFLRCYALYLAGEKRKEEEMIEL---------------EGPLGKSNAVNRE--------- 157
            FL+ Y+ +L+ +K+ +E M  +               +G    +  +N+          
Sbjct: 117 KFLKLYSKFLSWDKKSQESMENILTTGKFTDEMYRANKDGDGSGNEDINQSGHQRANLKM 176

Query: 158 ----------LISLERELSTSWKNGTVD------PFGL----YLYGIVLKDKGNENLART 197
                     + S+ +E++T  ++  +         GL    YL G++LK + N + A +
Sbjct: 177 VSNEHESQSNISSILKEINTFLESYEIKIDDDEADLGLALLYYLRGVILKQEKNISKAMS 236

Query: 198 VFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHW---------------------- 235
            F++S++ Y +NW+ W EL      +D  ++L LNN+                       
Sbjct: 237 SFLKSLSCYSFNWSCWLELMDCLQKVD--DALLLNNYLYQNFQFKFSENLGSQRTIEFNI 294

Query: 236 MKDYFLASAYQELRMHKES-LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEE 294
           M  +F    ++EL    E      E+L   F    +++A  A   Y+  ++   E  F++
Sbjct: 295 MIKFFKLKVFEELNGQLEDYFEDLEFLLQVFPNFTFLKAYNATISYNNLDYVTAESRFDD 354

Query: 295 LLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE 354
           +++ DPYR++D++ YSN+LY  +  S L+YLA  V   D++RPE+CCII NYYS + +HE
Sbjct: 355 IVKQDPYRLNDLETYSNILYVMQKNSKLAYLAQFVSQIDRFRPETCCIIANYYSARQEHE 414

Query: 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414
           KS++YFRRAL LDK   +AWTLMGHE+VE+ N+ AAI+ YRRAVDI PRD++AW+GLGQA
Sbjct: 415 KSIMYFRRALTLDKKTTNAWTLMGHEFVELSNSHAAIECYRRAVDICPRDFKAWFGLGQA 474

Query: 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR---AANCN 471
           Y ++ M LY+L+YF+K+  L+P D R+W  + +CY      +  EAIKCY+R   A+   
Sbjct: 475 YALLDMHLYSLYYFQKACTLKPWDRRIWQVLGECYSKTGNKV--EAIKCYKRSIKASQTV 532

Query: 472 DSEAIALNQLAKLHHALGRDEEAAFYYKK--DLERMEAEEREGPNMVEALIFLATHCRAH 529
           D       +LA+L+  L   +E   +  K  D+E +  E       V+A ++LA      
Sbjct: 533 DQNTSIYYRLAQLYEELEDLQECKKFMMKCVDVEEL-LEGIVTDETVKARLWLAIFEIKA 591

Query: 530 GRFEEAEVY 538
           G ++ A  Y
Sbjct: 592 GNYQLAYDY 600

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A7Z061|CDC27_BOVIN Cell division cycle protein 27 homolog OS=Bos taurus GN=CDC27 PE=2 SV=1

 Score =  132 bits (331), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 151/276 (54%), Gaps = 21/276 (7%)

Query: 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN 311
           KE++    +L      + ++  QI +A + L E+ Q E IF E+ R + YRV+ M++YS 
Sbjct: 483 KEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYST 542

Query: 312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL 371
            L+  +   ALS L+  +   DK  PE+ C  GN +SL+ +H+ ++ +F+RA+++D NY 
Sbjct: 543 TLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYA 602

Query: 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431
            A+TL+GHE+V  +    A+  +R A+ +NPR Y AWYGLG  Y        A  +F+K+
Sbjct: 603 YAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKA 662

Query: 432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL---NQLAKLHHA- 487
           + + P  S L      C+    + +++ A+K   +A +  + +AI +   N L K H A 
Sbjct: 663 LDINPQSSVLL-----CH----IGVVQHALKKSEKALDTLN-KAIVIDPKNPLCKFHRAS 712

Query: 488 -LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 522
            L  +E+    YK  L+ +E  ++  P   E+L++ 
Sbjct: 713 VLFANEK----YKSALQELEELKQIVPK--ESLVYF 742

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Bos taurus (taxid: 9913)

>sp|P30260|CDC27_HUMAN Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27 PE=1 SV=2

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 151/276 (54%), Gaps = 21/276 (7%)

Query: 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN 311
           KE++    +L      + ++  QI +A + L E+ Q E IF E+ R + YRV+ M++YS 
Sbjct: 482 KEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYST 541

Query: 312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL 371
            L+  +   ALS L+  +   DK  PE+ C  GN +SL+ +H+ ++ +F+RA+++D NY 
Sbjct: 542 TLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYA 601

Query: 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431
            A+TL+GHE+V  +    A+  +R A+ +NPR Y AWYGLG  Y        A  +F+K+
Sbjct: 602 YAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKA 661

Query: 432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL---NQLAKLHHA- 487
           + + P  S L      C+    + +++ A+K   +A +  + +AI +   N L K H A 
Sbjct: 662 LDINPQSSVLL-----CH----IGVVQHALKKSEKALDTLN-KAIVIDPKNPLCKFHRAS 711

Query: 488 -LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 522
            L  +E+    YK  L+ +E  ++  P   E+L++ 
Sbjct: 712 VLFANEK----YKSALQELEELKQIVPK--ESLVYF 741

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|A2A6Q5|CDC27_MOUSE Cell division cycle protein 27 homolog OS=Mus musculus GN=Cdc27 PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 151/276 (54%), Gaps = 21/276 (7%)

Query: 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN 311
           KE++    +L      + ++  QI +A + L E+ Q E IF E+ R + +RV+ M++YS 
Sbjct: 483 KEAINILSHLPSHHYSTGWVLCQIGRAYFELSEYMQAERIFSEVRRIESFRVEGMEIYST 542

Query: 312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL 371
            L+  +   ALS L+  +   DK  PE+ C  GN +SL+ +H+ ++ +F+RA+++D NY 
Sbjct: 543 TLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYA 602

Query: 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431
            A+TL+GHE+V  +    A+  +R A+ +NPR Y AWYGLG  Y        A  +F+K+
Sbjct: 603 YAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKA 662

Query: 432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL---NQLAKLHHA- 487
           + + P  S L      C+    + +++ A+K   +A +  + +AI +   N L K H A 
Sbjct: 663 LDINPQSSVLL-----CH----IGVVQHALKKSEKALDTLN-KAIVIDPKNPLCKFHRAS 712

Query: 488 -LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 522
            L  +E+    YK  L+ +E  ++  P   E+L++ 
Sbjct: 713 VLFANEK----YKSALQELEELKQIVPK--ESLVYF 742

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
224121614	576	predicted protein [Populus trichocarpa]	0.983	0.951	0.883	0.0
225463151	577	PREDICTED: anaphase-promoting complex su	0.983	0.949	0.888	0.0
147844945	577	hypothetical protein VITISV_005847 [Viti	0.983	0.949	0.888	0.0
255540807	577	cell division cycle, putative [Ricinus c	0.983	0.949	0.883	0.0
225438412	577	PREDICTED: anaphase-promoting complex su	0.983	0.949	0.870	0.0
356539852	577	PREDICTED: anaphase-promoting complex su	0.983	0.949	0.854	0.0
449469497	577	PREDICTED: anaphase-promoting complex su	0.983	0.949	0.863	0.0
356497214	578	PREDICTED: anaphase-promoting complex su	0.983	0.948	0.844	0.0
297819430	579	anaphase-promoting complex/cyclosome 8 [	0.983	0.946	0.803	0.0
356544333	577	PREDICTED: anaphase-promoting complex su	0.983	0.949	0.804	0.0

>gi|224121614|ref|XP_002318627.1| predicted protein [Populus trichocarpa] gi|222859300|gb|EEE96847.1| predicted protein [Populus trichocarpa]

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/548 (88%), Positives = 522/548 (95%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           M+SKE+CR+ELR A+RQLS+RCLYSA+KWA EQLVGIEQDPAK+TPTNTRFQRGSSSIRR
Sbjct: 1   MNSKETCRSELRIALRQLSDRCLYSASKWAGEQLVGIEQDPAKFTPTNTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           RFRTNDITSTPV G+SYVSTPV+EEDEV D DFYLLAKSYFDCREY+RAAHVLRDQ  ++
Sbjct: 61  RFRTNDITSTPVTGMSYVSTPVLEEDEVIDGDFYLLAKSYFDCREYKRAAHVLRDQNAKK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           SVFLRCYALYLAGEKRKEEEMIELEGPLGKS+AVNREL+SLERELST  KNGT+DPFGLY
Sbjct: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELVSLERELSTLRKNGTIDPFGLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK++GN+NLARTV VESVNSYPWNWNAW+EL+SLCT+I++LNSLNL+NHWMKD+F
Sbjct: 181 LYGLVLKNRGNQNLARTVLVESVNSYPWNWNAWTELQSLCTTIEMLNSLNLSNHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LASAYQELRMH ESL KYEYLQGTFSFSNYIQAQIAKAQY LREF+QVEVIFEELLRNDP
Sbjct: 241 LASAYQELRMHNESLAKYEYLQGTFSFSNYIQAQIAKAQYCLREFDQVEVIFEELLRNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSV+YF
Sbjct: 301 YRVEDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVMYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKLDK YLSAWTLMGHEYVEMKNTPAA+DAYRRAVDINP DYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLDKKYLSAWTLMGHEYVEMKNTPAAVDAYRRAVDINPCDYRAWYGLGQAYEMMGM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYF+KSVFLQP+DSRLWIAMAQCYET+QLH+LE+AIKCYRRAANCND EAIAL+Q
Sbjct: 421 PFYALHYFKKSVFLQPSDSRLWIAMAQCYETDQLHLLEDAIKCYRRAANCNDKEAIALHQ 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKLH  LGR EEAAFYYKKDL+RME EEREGPNMVEAL+FLA HCR H R EEAEVYCT
Sbjct: 481 LAKLHFELGRPEEAAFYYKKDLDRMEDEEREGPNMVEALLFLAQHCRTHKRLEEAEVYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463151|ref|XP_002266966.1| PREDICTED: anaphase-promoting complex subunit 8 [Vitis vinifera]

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/548 (88%), Positives = 522/548 (95%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           MSSK+SCRNELR AIRQLS+RCLYSAAKWAAEQLVGIEQDPAK+TP++TRFQRGSSSIRR
Sbjct: 1   MSSKDSCRNELRFAIRQLSDRCLYSAAKWAAEQLVGIEQDPAKFTPSHTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           RFRTN+I STP AGVSYVSTPV+EEDE  D DFYLLAKSYFDCREYRR AHVLRDQTG++
Sbjct: 61  RFRTNEIASTPTAGVSYVSTPVLEEDEAVDGDFYLLAKSYFDCREYRRTAHVLRDQTGKK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           +VFLRCYALYLAGEKRKEEEMIELEGPLGKS+AVN EL+SLERELST  KNGTVDPFGLY
Sbjct: 121 AVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNHELVSLERELSTLRKNGTVDPFGLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK+KG+ENLARTV VESVNSYPWNWNAW+EL+SLCT+IDILNSLNLNNHWMKD+F
Sbjct: 181 LYGLVLKEKGSENLARTVLVESVNSYPWNWNAWTELQSLCTTIDILNSLNLNNHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LAS YQELRMH ESL KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVE+IF+ELLRNDP
Sbjct: 241 LASVYQELRMHNESLGKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEIIFDELLRNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKECFSALSYLAHRVF+TDKYRPESCCIIGNYYSLKGQHEKSVVYF
Sbjct: 301 YRVEDMDMYSNVLYAKECFSALSYLAHRVFLTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKL+KNYLSAWTLMGHEYVEMKNTPAA+DAYRRAVDINP DYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLNKNYLSAWTLMGHEYVEMKNTPAAVDAYRRAVDINPCDYRAWYGLGQAYEMMFM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYFRKSVFLQPNDSRLWIAMAQCYET+QL MLE+AIKCY+RAANCND+EAIAL+Q
Sbjct: 421 PYYALHYFRKSVFLQPNDSRLWIAMAQCYETDQLQMLEDAIKCYKRAANCNDTEAIALHQ 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKL   L R EEAAFYYKKDLERMEAEEREGPNMVEAL+FLAT+ ++  RFEEAE+YCT
Sbjct: 481 LAKLSKELKRSEEAAFYYKKDLERMEAEEREGPNMVEALLFLATYYKSQKRFEEAEIYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844945|emb|CAN83330.1| hypothetical protein VITISV_005847 [Vitis vinifera]

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/548 (88%), Positives = 522/548 (95%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           MSSK+SCRNELR AIRQLS+RCLYSAAKWAAEQLVGIEQDPAK+TP++TRFQRGSSSIRR
Sbjct: 1   MSSKDSCRNELRFAIRQLSDRCLYSAAKWAAEQLVGIEQDPAKFTPSHTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           RFRTN+I STP AGVSYVSTPV+EEDE  D DFYLLAKSYFDCREYRR AHVLRDQTG++
Sbjct: 61  RFRTNEIASTPTAGVSYVSTPVLEEDEAVDGDFYLLAKSYFDCREYRRTAHVLRDQTGKK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           +VFLRCYALYLAGEKRKEEEMIELEGPLGKS+AVN EL+SLERELST  KNGTVDPFGLY
Sbjct: 121 AVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNHELVSLERELSTLRKNGTVDPFGLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK+KG+ENLARTV VESVNSYPWNWNAW+EL+SLCT+IDILNSLNLNNHWMKD+F
Sbjct: 181 LYGLVLKEKGSENLARTVLVESVNSYPWNWNAWTELQSLCTTIDILNSLNLNNHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LAS YQELRMH ESL KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVE+IF+ELLRNDP
Sbjct: 241 LASXYQELRMHNESLGKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEIIFDELLRNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKECFSALSYLAHRVF+TDKYRPESCCIIGNYYSLKGQHEKSVVYF
Sbjct: 301 YRVEDMDMYSNVLYAKECFSALSYLAHRVFLTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKL+KNYLSAWTLMGHEYVEMKNTPAA+DAYRRAVDINP DYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLNKNYLSAWTLMGHEYVEMKNTPAAVDAYRRAVDINPCDYRAWYGLGQAYEMMFM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYFRKSVFLQPNDSRLWIAMAQCYET+QL MLE+AIKCY+RAANCND+EAIAL+Q
Sbjct: 421 PYYALHYFRKSVFLQPNDSRLWIAMAQCYETDQLQMLEDAIKCYKRAANCNDTEAIALHQ 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKL   L R EEAAFYYKKDLERMEAEEREGPNMVEAL+FLAT+ ++  RFEEAE+YCT
Sbjct: 481 LAKLSKELKRSEEAAFYYKKDLERMEAEEREGPNMVEALLFLATYYKSQKRFEEAEIYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540807|ref|XP_002511468.1| cell division cycle, putative [Ricinus communis] gi|223550583|gb|EEF52070.1| cell division cycle, putative [Ricinus communis]

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/548 (88%), Positives = 518/548 (94%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           M+S+E+CR ELR+AIRQLS+RCLYSA+KWAAEQLVGIEQDPAK+TP+NTRFQRGSSSIRR
Sbjct: 1   MTSRENCRVELRTAIRQLSDRCLYSASKWAAEQLVGIEQDPAKFTPSNTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           RFRTNDITSTP AGVSY+STPVMEEDEV D DFYLLAKSYFDCREYRRAAHVLRDQ G++
Sbjct: 61  RFRTNDITSTPAAGVSYISTPVMEEDEVVDGDFYLLAKSYFDCREYRRAAHVLRDQNGKK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           SVFLRCYALYLAGEKRKEEEMIELEGPLGKS+AVNRE  SLERE ST  KNGT+DPFGLY
Sbjct: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNREFASLEREFSTLRKNGTIDPFGLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK+KGN+NLARTV VESVN+YPWNW+AWSEL+SLC + +ILNSL L+NHWMKD+F
Sbjct: 181 LYGLVLKEKGNQNLARTVLVESVNNYPWNWSAWSELQSLCATAEILNSLTLSNHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LASAYQELRMH ESL KYE LQ TFSFSNY+QAQIAKAQYSLREFEQVEVIFEELLRNDP
Sbjct: 241 LASAYQELRMHNESLAKYESLQSTFSFSNYVQAQIAKAQYSLREFEQVEVIFEELLRNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           +R++DMDMYSNVLYAKECF+ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSV+YF
Sbjct: 301 HRIEDMDMYSNVLYAKECFAALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVMYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKL+KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLNKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMGM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYF+KSVFLQPNDSRLWIAMAQCYET+QL M EEAIKCYRRAANCND EAIAL+Q
Sbjct: 421 PFYALHYFKKSVFLQPNDSRLWIAMAQCYETDQLQMREEAIKCYRRAANCNDREAIALHQ 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKLH  LGR EEAAFYYKKDLERMEAEEREGPNMVEAL+FLA HCR   RFEEAEVYCT
Sbjct: 481 LAKLHAELGRSEEAAFYYKKDLERMEAEEREGPNMVEALLFLAQHCREQKRFEEAEVYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438412|ref|XP_002274876.1| PREDICTED: anaphase-promoting complex subunit 8 [Vitis vinifera]

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/548 (87%), Positives = 513/548 (93%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           MSSKESCRNELR+AI QLS+RCLYSAAKWAAEQLVGIEQDPAK+TP++TRFQ GSSSIRR
Sbjct: 1   MSSKESCRNELRTAICQLSDRCLYSAAKWAAEQLVGIEQDPAKFTPSHTRFQLGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           RFRTN+I STP AGVS VSTP++EEDE  D DFYLLAKSYFDCREYRRAAHVLRDQT ++
Sbjct: 61  RFRTNEIASTPTAGVSSVSTPMLEEDEAIDGDFYLLAKSYFDCREYRRAAHVLRDQTRKK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           +VFLRCYALYLAGEKRKEEEMIELEGPLGKS+AVN EL+ LERELS   KNGTVDPFGLY
Sbjct: 121 AVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNHELVYLERELSMLRKNGTVDPFGLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VL  KG+ENLARTV VESVNSYPWNWNAW+EL+SLCT+IDILNSLNLN HWMKD+F
Sbjct: 181 LYGLVLNKKGSENLARTVLVESVNSYPWNWNAWTELQSLCTTIDILNSLNLNYHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LA+AYQELRMH ESL KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP
Sbjct: 241 LANAYQELRMHNESLGKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKECFS LSYLAHRVF+TDKYRPESC IIGNYYSLKGQHEKSVVYF
Sbjct: 301 YRVEDMDMYSNVLYAKECFSTLSYLAHRVFLTDKYRPESCFIIGNYYSLKGQHEKSVVYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKL+KNYLSAWTLMGHEYVEMKNTPAA+DAYRRAVDINP DYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLNKNYLSAWTLMGHEYVEMKNTPAAVDAYRRAVDINPCDYRAWYGLGQAYEMMGM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYFRKSVFLQPNDSRLWIAM QCYET+QL MLE+AIKCY+RAANCND+EAIAL+Q
Sbjct: 421 PYYALHYFRKSVFLQPNDSRLWIAMGQCYETDQLQMLEDAIKCYKRAANCNDTEAIALHQ 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           +AKL   L R EEAAFYYKKDLERMEAEEREGPN+VEAL+FLAT+ ++  RFEEAE+YCT
Sbjct: 481 IAKLSKDLKRSEEAAFYYKKDLERMEAEEREGPNLVEALLFLATYYKSQKRFEEAEIYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539852|ref|XP_003538407.1| PREDICTED: anaphase-promoting complex subunit 8-like [Glycine max]

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/548 (85%), Positives = 514/548 (93%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           MSSKESCR+ELR AIRQLS+RCLYSA+KWAAEQLVGIEQDPAK+TP+NTRFQRGSSSIRR
Sbjct: 1   MSSKESCRSELRIAIRQLSDRCLYSASKWAAEQLVGIEQDPAKFTPSNTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           +++T++IT TP+AGVSYV+TP MEEDE+ D DFYLLAKSYFDCREY+RAAHVLRDQ GR+
Sbjct: 61  KYKTHEITGTPIAGVSYVATPAMEEDELVDGDFYLLAKSYFDCREYKRAAHVLRDQNGRK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           SVFLRC+ALYLAGEKRKEEEMIELEGPLGKS+AVN EL+SLERELST  KNG VDPF LY
Sbjct: 121 SVFLRCHALYLAGEKRKEEEMIELEGPLGKSDAVNHELVSLERELSTFRKNGKVDPFCLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK KG+ENLAR V VESVNSYPWNWNAW+EL+SLC ++DILNSLNLN+HWMKD+F
Sbjct: 181 LYGLVLKQKGSENLARAVLVESVNSYPWNWNAWTELQSLCKTVDILNSLNLNSHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LAS YQELRMH +SL+KYEYL GTFS SNY+QAQIAKAQYSLREF+QVE IFEELL NDP
Sbjct: 241 LASVYQELRMHNDSLSKYEYLLGTFSNSNYVQAQIAKAQYSLREFDQVEAIFEELLSNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF
Sbjct: 301 YRVEDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKL+KN+LSAWTLMGHE+VEMKNTPAA+DAYRRAVDI+PRDYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLNKNFLSAWTLMGHEFVEMKNTPAAVDAYRRAVDIDPRDYRAWYGLGQAYEMMGM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYF+KSVFLQPNDSRLWIAMAQCYET+QL ML+EAIKCYRRAANCND EAIAL+ 
Sbjct: 421 PFYALHYFKKSVFLQPNDSRLWIAMAQCYETDQLRMLDEAIKCYRRAANCNDREAIALHN 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKLH  LGR EEAAFYYKKDLERME+EEREGP MVEAL++LA + RA  +FE+AEVYCT
Sbjct: 481 LAKLHSELGRPEEAAFYYKKDLERMESEEREGPKMVEALLYLAKYYRAQKKFEDAEVYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469497|ref|XP_004152456.1| PREDICTED: anaphase-promoting complex subunit 8-like [Cucumis sativus] gi|449487786|ref|XP_004157800.1| PREDICTED: anaphase-promoting complex subunit 8-like [Cucumis sativus]

 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/548 (86%), Positives = 518/548 (94%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           M+SK++CR+ELR+AIRQLS+RCLYSA+KWAAEQLVGIEQDPAK+TP+NTRFQRGSSSIRR
Sbjct: 1   MTSKDNCRHELRTAIRQLSDRCLYSASKWAAEQLVGIEQDPAKFTPSNTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           RF +N+ +STP+AG+SYVSTPVMEEDEV D DFYLLAKSYFDCREY+RAAHVLR+Q G++
Sbjct: 61  RFHSNEGSSTPIAGMSYVSTPVMEEDEVVDGDFYLLAKSYFDCREYKRAAHVLREQNGKK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           SVFLR YALYLAGEKRKEEE++ELEG LGKS+AVN+EL+SLERELST  KNG +DPFGLY
Sbjct: 121 SVFLRLYALYLAGEKRKEEEVVELEGSLGKSDAVNQELVSLERELSTLRKNGMIDPFGLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK KG+ENLART  VESVNSYPWNW+AWSEL+SLCT+IDILNSLNLNNHWMKD+F
Sbjct: 181 LYGLVLKQKGSENLARTALVESVNSYPWNWSAWSELQSLCTTIDILNSLNLNNHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LASAYQELRMH ESL KYE LQGTFSFSNYIQAQIAKAQYSLREF+QVE IFEELLRNDP
Sbjct: 241 LASAYQELRMHNESLVKYENLQGTFSFSNYIQAQIAKAQYSLREFDQVEAIFEELLRNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF
Sbjct: 301 YRVEDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKL+KNYLSAWTLMGHE+VEMKN PAAIDAYRRAVDIN  DYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLNKNYLSAWTLMGHEFVEMKNIPAAIDAYRRAVDINSCDYRAWYGLGQAYEMMGM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYF+KSVFLQPNDSRLWIAMAQCYE+EQL MLE+AIKCYRRAANCND EAIAL+Q
Sbjct: 421 PFYALHYFKKSVFLQPNDSRLWIAMAQCYESEQLRMLEDAIKCYRRAANCNDREAIALHQ 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKLH  LG+ EEAAFYYKKDLERMEAEEREGPNMVEAL+FLAT+ +A  +F+EAE+YCT
Sbjct: 481 LAKLHSELGQSEEAAFYYKKDLERMEAEEREGPNMVEALLFLATYYKAQKKFDEAEIYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497214|ref|XP_003517457.1| PREDICTED: anaphase-promoting complex subunit 8-like [Glycine max]

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/548 (84%), Positives = 507/548 (92%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           MSSKESCR+ELR AIRQLS+RCLY A+KWAAEQLVGIEQDPAK+TP+NTRFQRGSSSIRR
Sbjct: 1   MSSKESCRSELRIAIRQLSDRCLYCASKWAAEQLVGIEQDPAKFTPSNTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           +++T++I  TP AGVSYV+TPVMEEDE+ D DFYLLAKSYFDCREY+RAA VLRDQ GR+
Sbjct: 61  KYKTHEIAGTPSAGVSYVATPVMEEDELVDGDFYLLAKSYFDCREYKRAARVLRDQNGRK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           SVFLRCYALYLAGEKRKEEEMIELEGPLGKS+AVN EL+SLERELST  KNG VD FGLY
Sbjct: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNHELVSLERELSTLRKNGKVDAFGLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK KG+ENLARTV VESVNSYPWNWNAW+EL+SLC ++DILNSLNLN+HWMKD+F
Sbjct: 181 LYGLVLKQKGSENLARTVLVESVNSYPWNWNAWTELQSLCKTVDILNSLNLNSHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LAS YQELRMH +SL+KYEYL GTFS SNYIQAQIAKAQYSLREF+QVE IFEELL NDP
Sbjct: 241 LASVYQELRMHNDSLSKYEYLLGTFSNSNYIQAQIAKAQYSLREFDQVEAIFEELLSNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI+GNYYSLKGQHEKSVVYF
Sbjct: 301 YRVEDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIVGNYYSLKGQHEKSVVYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKL+KN+L AWTLMGHE+VEMKNTPAA+DAYRRAVDI+PRDY AWYGLGQAYEMM M
Sbjct: 361 RRALKLNKNFLLAWTLMGHEFVEMKNTPAAVDAYRRAVDIDPRDYHAWYGLGQAYEMMGM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P Y L+YF+KSVFLQPNDSRLWIAMAQCYET+QL ML+EAIKCYRRAANCND EAIAL+ 
Sbjct: 421 PFYVLNYFKKSVFLQPNDSRLWIAMAQCYETDQLRMLDEAIKCYRRAANCNDREAIALHN 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKLH  LG  EEAAFYYKKDLERME+EEREGP MVEAL++LA + RA   FEEAE+YCT
Sbjct: 481 LAKLHSELGCPEEAAFYYKKDLERMESEEREGPKMVEALLYLAKYYRAQKSFEEAEIYCT 540

Query: 541 RLLDYTGP 548
           RLLDYTGP
Sbjct: 541 RLLDYTGP 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819430|ref|XP_002877598.1| anaphase-promoting complex/cyclosome 8 [Arabidopsis lyrata subsp. lyrata] gi|297323436|gb|EFH53857.1| anaphase-promoting complex/cyclosome 8 [Arabidopsis lyrata subsp. lyrata]

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/550 (80%), Positives = 497/550 (90%), Gaps = 2/550 (0%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           M SK+SCRNE+R+AIRQLS+RCLYSAAKWA EQLVGIEQDP+ +TP NTRFQRGSSSIRR
Sbjct: 1   MVSKDSCRNEIRAAIRQLSDRCLYSAAKWAGEQLVGIEQDPSNFTPANTRFQRGSSSIRR 60

Query: 61  RFRTNDITSTPV--AGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTG 118
           RF TN+  STP+   G S  +TP+ EEDE  D DFYLLAKSYFDCREYRRA+HVLRDQ  
Sbjct: 61  RFSTNESISTPLPSVGFSQAATPLPEEDEAIDGDFYLLAKSYFDCREYRRASHVLRDQVS 120

Query: 119 RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFG 178
           ++SVFLR YALYLAGEKRKEEEMIELEGPLGKS+A+NREL+SLER+LS   + G +D FG
Sbjct: 121 KKSVFLRYYALYLAGEKRKEEEMIELEGPLGKSDAINRELVSLERDLSALRRTGAIDSFG 180

Query: 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD 238
           LYLYG+VLK+KGNE+LAR   VESVNSYPWNW+AWSEL+SLCTSI++LNSLNL+NHWMK+
Sbjct: 181 LYLYGVVLKEKGNESLARASLVESVNSYPWNWSAWSELQSLCTSIEVLNSLNLSNHWMKE 240

Query: 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
           +FL +AYQELRMH ESL KYEYLQG FSFSNYIQAQ AKAQYSLREF+QVE++FEELLRN
Sbjct: 241 FFLGNAYQELRMHTESLAKYEYLQGIFSFSNYIQAQTAKAQYSLREFDQVEIMFEELLRN 300

Query: 299 DPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVV 358
           DPYRV+DMD+YSNVLYAKE  +ALSYLAH+VF+TDKYRPESCCIIGNYYSLKGQHEK+V+
Sbjct: 301 DPYRVEDMDLYSNVLYAKEACAALSYLAHKVFLTDKYRPESCCIIGNYYSLKGQHEKAVM 360

Query: 359 YFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM 418
           YFRRALKL+K YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP DYRAWYGLGQAYEMM
Sbjct: 361 YFRRALKLNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPCDYRAWYGLGQAYEMM 420

Query: 419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
            MP YALHYFRKS+F  PNDSRLWIAMA+CY+TEQL+MLEEAIKCY+RA NC D+E IAL
Sbjct: 421 GMPFYALHYFRKSIFFLPNDSRLWIAMAKCYQTEQLYMLEEAIKCYKRAVNCTDTEGIAL 480

Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538
           NQLAKLH  LGR+EEAAFY++KDLERM+AE  EGPNM EAL+FLATH + H +FEEAEVY
Sbjct: 481 NQLAKLHQKLGRNEEAAFYFEKDLERMDAEGLEGPNMFEALVFLATHFKTHKKFEEAEVY 540

Query: 539 CTRLLDYTGP 548
           CTRLLDY+GP
Sbjct: 541 CTRLLDYSGP 550

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544333|ref|XP_003540607.1| PREDICTED: anaphase-promoting complex subunit 8-like [Glycine max]

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/548 (80%), Positives = 496/548 (90%)

Query: 1   MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
           MSSK+SCR+ELR AIRQL +RCLYSA+KWAAEQLVGIE D AK+TP+NTRF RGSSSIRR
Sbjct: 1   MSSKDSCRSELRIAIRQLGDRCLYSASKWAAEQLVGIEADNAKFTPSNTRFHRGSSSIRR 60

Query: 61  RFRTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR 120
           ++RT++   TPV GVSY +TPV+EEDE+ D DFYLLAKSYFDCREY+RAAHVLRDQ GR+
Sbjct: 61  KYRTHETAVTPVVGVSYDATPVLEEDELVDGDFYLLAKSYFDCREYKRAAHVLRDQMGRK 120

Query: 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLY 180
           SVFLRCYALYLAGEKRK+EE IELEGPLGKS+A+N EL+SLERELST  KNG  DPF LY
Sbjct: 121 SVFLRCYALYLAGEKRKDEETIELEGPLGKSDAINHELVSLERELSTLHKNGQADPFCLY 180

Query: 181 LYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240
           LYG+VLK KGNE+LAR V VESVNSYPWNWNAW+EL+SLC  +D LNSLNLN+HWMKD+F
Sbjct: 181 LYGLVLKQKGNESLARVVLVESVNSYPWNWNAWTELQSLCKKVDTLNSLNLNSHWMKDFF 240

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
           LAS YQELRM+ +SL+KYEYL GTF +SNYIQAQIAKAQYSLREF+QVE IFEELL+NDP
Sbjct: 241 LASVYQELRMYNDSLSKYEYLLGTFGYSNYIQAQIAKAQYSLREFDQVEAIFEELLKNDP 300

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           YRV+DMDMYSNVLYAKEC ++LSYLAHRVFMTDKY+PESCCIIGNYYSLKGQHEKSVVYF
Sbjct: 301 YRVEDMDMYSNVLYAKECSASLSYLAHRVFMTDKYKPESCCIIGNYYSLKGQHEKSVVYF 360

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRALKLDKNYL+AWTLMGHE+VEMKNTPAA+DAYRRAVDI+  DYRAWYGLGQAYEMM M
Sbjct: 361 RRALKLDKNYLTAWTLMGHEFVEMKNTPAAVDAYRRAVDIDSCDYRAWYGLGQAYEMMGM 420

Query: 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480
           P YALHYF+KSV LQ NDSRLWIAMAQCYET+QL ML++AIKCY+RA NCND EAIAL+Q
Sbjct: 421 PFYALHYFKKSVLLQQNDSRLWIAMAQCYETDQLRMLDDAIKCYKRAVNCNDREAIALHQ 480

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           LAKLH  LG  EEAAFYYKKDLERME+E+RE P M+EAL++LA + R   +FEEA+VYCT
Sbjct: 481 LAKLHSELGHTEEAAFYYKKDLERMESEDREEPTMIEALLYLAKYYREQQKFEEADVYCT 540

Query: 541 RLLDYTGP 548
           RL+DYTGP
Sbjct: 541 RLVDYTGP 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
TAIR|locus:2100439	579	APC8 "anaphase-promoting compl	0.983	0.946	0.763	5.6e-235
DICTYBASE|DDB_G0272775	592	anapc8 "anaphase promoting com	0.698	0.657	0.483	7.1e-111
ZFIN|ZDB-GENE-040426-866	579	cdc23 "CDC23 (cell division cy	0.829	0.797	0.441	2.4e-106
UNIPROTKB|F1NQ36	594	CDC23 "Uncharacterized protein	0.755	0.708	0.478	1.5e-104
UNIPROTKB|F1LRQ6	597	Cdc23 "Protein Cdc23" [Rattus	0.777	0.725	0.473	2.5e-104
UNIPROTKB|A1A4R8	597	CDC23 "Cell division cycle pro	0.754	0.703	0.485	4.1e-104
UNIPROTKB|E2RHG6	597	CDC23 "Uncharacterized protein	0.754	0.703	0.485	4.1e-104
UNIPROTKB|Q9UJX2	597	CDC23 "Cell division cycle pro	0.754	0.703	0.485	4.1e-104
UNIPROTKB|F1RH91	594	CDC23 "Uncharacterized protein	0.754	0.707	0.485	4.1e-104
MGI|MGI:1098815	597	Cdc23 "CDC23 cell division cyc	0.777	0.725	0.473	6.7e-104

TAIR|locus:2100439 APC8 "anaphase-promoting complex subunit 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 2266 (802.7 bits), Expect = 5.6e-235, P = 5.6e-235
 Identities = 420/550 (76%), Positives = 475/550 (86%)

Query:     1 MSSKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRR 60
             M SKE CRNE+R+AIRQLS+RCLYSAAKWA EQLVGIEQDP+ +TP NTRFQRGSSSIRR
Sbjct:     1 MVSKECCRNEIRAAIRQLSDRCLYSAAKWAGEQLVGIEQDPSNFTPANTRFQRGSSSIRR 60

Query:    61 RFRTNDITSTPV--AGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTG 118
             RF TN+  STP+   G S  +TP+ EEDE  D D YLLAKSYFDCREYRRA+H+LRDQ  
Sbjct:    61 RFSTNESISTPLPSVGFSQAATPLPEEDEAIDGDIYLLAKSYFDCREYRRASHMLRDQVS 120

Query:   119 RRSVFLRCYALYLAGXXXXXXXXXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFG 178
             ++S+FLR YALYLAG            GPLGKS+A+NREL+SLER+LS   + G +D FG
Sbjct:   121 KKSLFLRYYALYLAGEKRKEEEMIELEGPLGKSDAINRELVSLERDLSALRRTGAIDSFG 180

Query:   179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKD 238
             LYLYG+VLK+KGNE+LAR   VESVNSYPWNW+AWSEL+SLCTSI+I        HWMK+
Sbjct:   181 LYLYGVVLKEKGNESLARASLVESVNSYPWNWSAWSELQSLCTSIEILNSLNLNNHWMKE 240

Query:   239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
             +FL +AYQELRMH ESL KYEYLQG FSFSNYIQAQ AKAQYSLREF+QVE++FEELLRN
Sbjct:   241 FFLGNAYQELRMHTESLAKYEYLQGIFSFSNYIQAQTAKAQYSLREFDQVEIMFEELLRN 300

Query:   299 DPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVV 358
             DPYRV+DMD+YSNVLYAKE  +ALSYLAH+VF+TDKYRPESCCIIGNYYSLKGQHEK+V+
Sbjct:   301 DPYRVEDMDLYSNVLYAKEACAALSYLAHKVFLTDKYRPESCCIIGNYYSLKGQHEKAVM 360

Query:   359 YFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM 418
             YFRRALKL+K YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP DYRAWYGLGQAYEMM
Sbjct:   361 YFRRALKLNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPTDYRAWYGLGQAYEMM 420

Query:   419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
              MP YALHYFRKS+F  PNDSRLWIAMA+CY+TEQL+MLEEAIKCY+RA NC D+E IAL
Sbjct:   421 GMPFYALHYFRKSIFFLPNDSRLWIAMAKCYQTEQLYMLEEAIKCYKRAVNCTDTEGIAL 480

Query:   479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538
             NQLAKLH  LGR+EEAA+Y++KDLERM+AE  EGPNM EAL+FLATH + H +FEEAEVY
Sbjct:   481 NQLAKLHQKLGRNEEAAYYFEKDLERMDAEGLEGPNMFEALVFLATHFKNHKKFEEAEVY 540

Query:   539 CTRLLDYTGP 548
             CTRLLDY+GP
Sbjct:   541 CTRLLDYSGP 550

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0007276 "gamete generation" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

DICTYBASE|DDB_G0272775 anapc8 "anaphase promoting complex subunit 8" [Dictyostelium discoideum (taxid:44689)]

 Score = 998 (356.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
 Identities = 191/395 (48%), Positives = 275/395 (69%)

Query:   156 RELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSE 215
             ++L    ++L    K   +D F LY Y ++LK + +  +AR V +ESV+ YP NW+AWS+
Sbjct:   177 KQLFQFYKKLYIENKKD-MDGFLLYFYSMLLKKQRDFTMARKVLIESVHKYPCNWSAWSD 235

Query:   216 LKSLCT-SIDIXXXXXXXXHWMKDYFLASAYQELRMHKESLTKYEYLQGT-FSFSNYIQA 273
             L SLC+ S DI        H+MKD+FLA    EL+ + ESL  Y+ L  T F+ S YI A
Sbjct:   236 LSSLCSDSADIIMQLSLPDHFMKDFFLAHFKLELQQNNESLVIYQQLSRTLFTQSTYILA 295

Query:   274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333
             Q A   Y+LR ++  E +FE L+  +P R++++D+YSN+LY ++  ++LS LAH+    +
Sbjct:   296 QTAIGNYNLRAYDIGEELFERLIELEPNRLENIDIYSNILYVRDKKASLSMLAHKAMKIE 355

Query:   334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393
             KY PE+CCIIGNYYSLK +H+K+++YF+RALKL+  YLSAWTL+GHE++E+KN  AAI+A
Sbjct:   356 KYCPETCCIIGNYYSLKLEHDKAILYFQRALKLNDRYLSAWTLIGHEFLEIKNVSAAINA 415

Query:   394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
             YR+AVDINPRDYRAWYGLGQ Y+++ +PLY+L+YF+K+  L+P D R+W A   CYE   
Sbjct:   416 YRKAVDINPRDYRAWYGLGQTYQLLKLPLYSLYYFKKATTLRPYDPRMWCAAGGCYEF-- 473

Query:   454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 513
             +  + EAIKCY RA    D E +A+N+LAKL+  +  +E+AAFYYKK+L   + E+ +G 
Sbjct:   474 IERIPEAIKCYERAEENYDRERVAINKLAKLYQEIQNNEKAAFYYKKNLYYCDQEKIDGQ 533

Query:   514 NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548
              +++AL+FLA   +   +  ++E YC RLLDY GP
Sbjct:   534 EIIDALLFLANFYKNQNQ-TQSEQYCLRLLDYAGP 567

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

ZFIN|ZDB-GENE-040426-866 cdc23 "CDC23 (cell division cycle 23, yeast, homolog)" [Danio rerio (taxid:7955)]

 Score = 1021 (364.5 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 207/469 (44%), Positives = 294/469 (62%)

Query:    81 PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGXXXXXXX 140
             P + E++ +D D   LAKSYFD +EY RAA+ LR    +++ FL  Y+ YL+G       
Sbjct:    57 PELTEEDAQDLDALCLAKSYFDLKEYDRAAYFLRGCRSQKAYFLYMYSRYLSGEKKKDDE 116

Query:   141 XXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
                  GPL K    N  L  L  ELS     G +D F LYLYG+VL+       A  +FV
Sbjct:   117 TVDSLGPLEKGQVRNEALRELRVELSKKHSAGELDGFALYLYGVVLRKLDLLKEAVEIFV 176

Query:   201 ESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQELRMHKESLTKYEY 260
              + ++ P +W +W EL +L T+I++         W++D+F+A  Y EL+M KE+L KY+ 
Sbjct:   177 AATHALPLHWGSWLELCNLITNIEMLKSLSLPDCWVRDFFMAHMYTELQMIKEALQKYQS 236

Query:   261 L-QGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
             L +  F+ S+YI +QIA A +++R+ +Q   +F EL   DP+R+++MD +SN+LY +   
Sbjct:   237 LMEAGFAKSSYIISQIAVAYHNIRDIDQALYLFNELREQDPFRIENMDTFSNLLYVRSMK 296

Query:   320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
               LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+   L AWTLMGH
Sbjct:   297 PELSYLAHNLVEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRCLGAWTLMGH 356

Query:   380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
             EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y+L+Y+RK+  L+PNDS
Sbjct:   357 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYSLYYYRKAHQLRPNDS 416

Query:   440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA---F 496
             R+ +A+ +CYE  +L    EA KCY RA +  D E +AL +LAKLH  L   ++AA    
Sbjct:   417 RMLVALGECYE--KLSQQLEAKKCYWRAYSVGDVERMALLKLAKLHEQLNESDDAAQCYI 474

Query:   497 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545
              Y +D+     E+ E   +  AL +L  +   +  ++EA +   R  DY
Sbjct:   475 IYIQDIFSC-GEQLEHAEVSTALRYLGQYYFKNKLYDEASLCAQRCCDY 522

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|F1NQ36 CDC23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1013 (361.7 bits), Expect = 1.5e-104, Sum P(2) = 1.5e-104
 Identities = 203/424 (47%), Positives = 272/424 (64%)

Query:    81 PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGXXXXXXX 140
             P + E++  D D Y LAKSYFD +EY RAA+ LR    +++ FL  Y+ YL+G       
Sbjct:    71 PALTEEDARDLDAYTLAKSYFDLKEYDRAAYFLRGCKSQKAYFLYMYSRYLSGEKKKDDE 130

Query:   141 XXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
                  GPL K    N  L  L  ELS   K   +D FGLYLYG+VL+       A  VFV
Sbjct:   131 TVDSLGPLEKGQVKNEALRELRVELSKKHKAQELDGFGLYLYGVVLRKLDLAKEAINVFV 190

Query:   201 ESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQELRMHKESLTKYEY 260
             E+ +  P     W EL +L T  ++         WMK++FLA  Y EL++ +E+L KY+ 
Sbjct:   191 EATHVLPCTGELWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQS 250

Query:   261 L-QGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
             L    FS S YI +QIA A +++R+ ++   IF EL + DPYR+++MD +SN+LY +   
Sbjct:   251 LIDAGFSKSTYIISQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMK 310

Query:   320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
               LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+  YL AWTLMGH
Sbjct:   311 PELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGH 370

Query:   380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
             EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+Y+R++  L+PNDS
Sbjct:   371 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDS 430

Query:   440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
             R+ +A+ +CYE  +L+ L EA KCY RA    D E +AL +LAKLH  L   E+AA  Y 
Sbjct:   431 RMLVALGECYE--KLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLNESEQAAQCYI 488

Query:   500 KDLE 503
             K ++
Sbjct:   489 KYIQ 492

GO:0000080 "G1 phase of mitotic cell cycle" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|F1LRQ6 Cdc23 "Protein Cdc23" [Rattus norvegicus (taxid:10116)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 207/437 (47%), Positives = 283/437 (64%)

Query:    69 STPVAGVSYVSTPV-MEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCY 127
             S P   +S +  P  + E++ +D D Y LAK+YFD +EY RAAH L     +++ FL  Y
Sbjct:    61 SLPALPLSELQPPPPLTEEDAQDVDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMY 120

Query:   128 ALYLAGXXXXXXXXXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLK 187
             + YL+G            GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+
Sbjct:   121 SRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSRKHQARGLDGFGLYLYGVVLR 180

Query:   188 DKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQE 247
                    A  VFVE+ +  P +W AW EL +L T  ++         WMK++FLA  Y E
Sbjct:   181 KLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTE 240

Query:   248 LRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM 306
             L++ +E+L KY++L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++M
Sbjct:   241 LQLIEEALQKYQHLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300

Query:   307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL 366
             D +SN+LY +   S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL
Sbjct:   301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360

Query:   367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH 426
             +  YL AWTLMGHEY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+
Sbjct:   361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420

Query:   427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486
             Y+R++  L+PNDSR+ +A+ +CYE  +L+ L EA KCY RA    D E +AL +LAKLH 
Sbjct:   421 YYRRAHQLRPNDSRMLVALGECYE--KLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHE 478

Query:   487 ALGRDEEAAFYYKKDLE 503
              L   E+AA  Y K ++
Sbjct:   479 QLTESEQAAQCYIKYIQ 495

GO:0000080 "G1 phase of mitotic cell cycle" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|A1A4R8 CDC23 "Cell division cycle protein 23 homolog" [Bos taurus (taxid:9913)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 206/424 (48%), Positives = 277/424 (65%)

Query:    81 PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGXXXXXXX 140
             P+ EED  +D D Y LAK+YFD +EY RAAH L     +++ FL  Y+ YL+G       
Sbjct:    75 PITEED-AQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDE 133

Query:   141 XXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
                  GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+       A  VFV
Sbjct:   134 TVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFV 193

Query:   201 ESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQELRMHKESLTKYEY 260
             E+ +  P +W AW EL +L T  ++         WMK++FLA  Y EL++ +E+L KY+ 
Sbjct:   194 EATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQN 253

Query:   261 LQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
             L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++MD +SN+LY +   
Sbjct:   254 LIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMK 313

Query:   320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
             S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+  YL AWTLMGH
Sbjct:   314 SELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGH 373

Query:   380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
             EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+Y+R++  L+PNDS
Sbjct:   374 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDS 433

Query:   440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
             R+ +A+ +CYE  +L+ L EA KCY RA    D E +AL +LAKLH  L   E+AA  Y 
Sbjct:   434 RMLVALGECYE--KLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCYI 491

Query:   500 KDLE 503
             K ++
Sbjct:   492 KYIQ 495

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0000080 "G1 phase of mitotic cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|E2RHG6 CDC23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 206/424 (48%), Positives = 277/424 (65%)

Query:    81 PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGXXXXXXX 140
             P+ EED  +D D Y LAK+YFD +EY RAAH L     +++ FL  Y+ YL+G       
Sbjct:    75 PITEED-AQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDE 133

Query:   141 XXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
                  GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+       A  VFV
Sbjct:   134 TVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFV 193

Query:   201 ESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQELRMHKESLTKYEY 260
             E+ +  P +W AW EL +L T  ++         WMK++FLA  Y EL++ +E+L KY+ 
Sbjct:   194 EATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQN 253

Query:   261 LQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
             L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++MD +SN+LY +   
Sbjct:   254 LIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMK 313

Query:   320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
             S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+  YL AWTLMGH
Sbjct:   314 SELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGH 373

Query:   380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
             EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+Y+R++  L+PNDS
Sbjct:   374 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDS 433

Query:   440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
             R+ +A+ +CYE  +L+ L EA KCY RA    D E +AL +LAKLH  L   E+AA  Y 
Sbjct:   434 RMLVALGECYE--KLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCYI 491

Query:   500 KDLE 503
             K ++
Sbjct:   492 KYIQ 495

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0000080 "G1 phase of mitotic cell cycle" evidence=IEA

UNIPROTKB|Q9UJX2 CDC23 "Cell division cycle protein 23 homolog" [Homo sapiens (taxid:9606)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 206/424 (48%), Positives = 277/424 (65%)

Query:    81 PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGXXXXXXX 140
             P+ EED  +D D Y LAK+YFD +EY RAAH L     +++ FL  Y+ YL+G       
Sbjct:    75 PITEED-AQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDE 133

Query:   141 XXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
                  GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+       A  VFV
Sbjct:   134 TVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFV 193

Query:   201 ESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQELRMHKESLTKYEY 260
             E+ +  P +W AW EL +L T  ++         WMK++FLA  Y EL++ +E+L KY+ 
Sbjct:   194 EATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQN 253

Query:   261 LQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
             L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++MD +SN+LY +   
Sbjct:   254 LIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMK 313

Query:   320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
             S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+  YL AWTLMGH
Sbjct:   314 SELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGH 373

Query:   380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
             EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+Y+R++  L+PNDS
Sbjct:   374 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDS 433

Query:   440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
             R+ +A+ +CYE  +L+ L EA KCY RA    D E +AL +LAKLH  L   E+AA  Y 
Sbjct:   434 RMLVALGECYE--KLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCYI 491

Query:   500 KDLE 503
             K ++
Sbjct:   492 KYIQ 495

GO:0051301 "cell division" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=IDA

GO:0007049 "cell cycle" evidence=TAS

GO:0007067 "mitosis" evidence=IDA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0007091 "metaphase/anaphase transition of mitotic cell cycle" evidence=TAS

GO:0007096 "regulation of exit from mitosis" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005622 "intracellular" evidence=IDA

UNIPROTKB|F1RH91 CDC23 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 206/424 (48%), Positives = 277/424 (65%)

Query:    81 PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGXXXXXXX 140
             P+ EED  +D D Y LAK+YFD +EY RAAH L     +++ FL  Y+ YL+G       
Sbjct:    72 PITEED-AQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDE 130

Query:   141 XXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
                  GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+       A  VFV
Sbjct:   131 TVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFV 190

Query:   201 ESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQELRMHKESLTKYEY 260
             E+ +  P +W AW EL +L T  ++         WMK++FLA  Y EL++ +E+L KY+ 
Sbjct:   191 EATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQN 250

Query:   261 LQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319
             L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++MD +SN+LY +   
Sbjct:   251 LIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMK 310

Query:   320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
             S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL+  YL AWTLMGH
Sbjct:   311 SELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGH 370

Query:   380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
             EY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+Y+R++  L+PNDS
Sbjct:   371 EYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDS 430

Query:   440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
             R+ +A+ +CYE  +L+ L EA KCY RA    D E +AL +LAKLH  L   E+AA  Y 
Sbjct:   431 RMLVALGECYE--KLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCYI 488

Query:   500 KDLE 503
             K ++
Sbjct:   489 KYIQ 492

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0000080 "G1 phase of mitotic cell cycle" evidence=IEA

MGI|MGI:1098815 Cdc23 "CDC23 cell division cycle 23" [Mus musculus (taxid:10090)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 207/437 (47%), Positives = 282/437 (64%)

Query:    69 STPVAGVSYVSTPV-MEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCY 127
             S P   +S +  P  + E++ +D D Y LAK+YFD +EY RAAH L     +++ FL  Y
Sbjct:    61 SLPALPLSELQPPPPLTEEDAQDVDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMY 120

Query:   128 ALYLAGXXXXXXXXXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLK 187
             + YL+G            GPL K    N  L  L  ELS   +   +D FGLYLYG+VL+
Sbjct:   121 SRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSRKHQARGLDGFGLYLYGVVLR 180

Query:   188 DKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDIXXXXXXXXHWMKDYFLASAYQE 247
                    A  VFVE+ +  P +W AW EL +L T  ++         WMK++FLA  Y E
Sbjct:   181 KLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTE 240

Query:   248 LRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM 306
             L++ +E+L KY++L    FS S+YI +QIA A +++R+ ++   IF EL + DPYR+++M
Sbjct:   241 LQLIEEALQKYQHLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300

Query:   307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL 366
             D +SN+LY +   S LSYLAH +   DKYR E+CC+IGNYYSL+ QHEK+ +YF+RALKL
Sbjct:   301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360

Query:   367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH 426
             +  YL AWTLMGHEY+EMKNT AAI AYR A+++N RDYRAWYGLGQ YE++ MP Y L+
Sbjct:   361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420

Query:   427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486
             Y+R++  L+PNDSR+ +A+ +CYE  +L+ L EA KCY RA    D E  AL +LAKLH 
Sbjct:   421 YYRRAHQLRPNDSRMLVALGECYE--KLNQLVEAKKCYWRAYAVGDVEKKALVKLAKLHE 478

Query:   487 ALGRDEEAAFYYKKDLE 503
              L   E+AA  Y K ++
Sbjct:   479 QLTESEQAAQCYIKYIQ 495

GO:0000080 "G1 phase of mitotic cell cycle" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=ISO

GO:0007080 "mitotic metaphase plate congression" evidence=ISO

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BGZ4	CDC23_MOUSE	No assigned EC number	0.5011	0.7504	0.7001	yes	no
P16522	CDC23_YEAST	No assigned EC number	0.3119	0.9138	0.8130	yes	no
Q86B11	CDC23_DICDI	No assigned EC number	0.5013	0.6678	0.6283	yes	no
A1A4R8	CDC23_BOVIN	No assigned EC number	0.5059	0.7486	0.6984	yes	no
O94556	APC8_SCHPO	No assigned EC number	0.4080	0.9084	0.8955	yes	no
Q9STS3	CDC23_ARATH	No assigned EC number	0.8	0.9838	0.9464	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	557
pfam04049	131	pfam04049, APC8, Anaphase promoting complex subuni	1e-41
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-19
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	8e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	4e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-04
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	1e-04
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	1e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	3e-04
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	5e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.002
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	0.003
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.003
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.004

>gnl|CDD|217860 pfam04049, APC8, Anaphase promoting complex subunit 8 / Cdc23

 Score =  145 bits (369), Expect = 1e-41
 Identities = 64/156 (41%), Positives = 85/156 (54%), Gaps = 30/156 (19%)

Query: 3   SKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRF 62
             +  RN+LR AI +LS RCLY +AKWAAE L G+ Q P+                    
Sbjct: 5   DLKELRNDLRKAIVELSERCLYQSAKWAAELLNGLPQIPSPGPVV--------------L 50

Query: 63  RTNDITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSV 122
              D              P     E ++ D YLLAKSYFDC+EY R A+VLRD   ++++
Sbjct: 51  ANPD--------------PQENALEAQEYDKYLLAKSYFDCKEYDRCAYVLRDCKSQKAL 96

Query: 123 FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNREL 158
           FLR Y+ YL+GEK+K+EE  ++ GP G  N VN+EL
Sbjct: 97  FLRLYSKYLSGEKKKDEETEDVLGPGG--NTVNKEL 130

The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). Length = 131

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 28/100 (28%), Positives = 57/100 (57%)

Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E+   +GN Y   G +++++ Y+ +AL+LD +   A+  +   Y ++     A++ Y +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
           ++++P + +A+Y LG AY  +     AL  + K++ L PN
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
           A   +G+ Y ++ +   A++ Y +A++++P +  A+Y L  AY  +     AL  + K++
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467
            L P++++ +  +   Y   +L   EEA++ Y +A
Sbjct: 62  ELDPDNAKAYYNLGLAY--YKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
           A   LG  Y  +     AL Y+ K++ L P+++  +  +A  Y   +L   EEA++ Y +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY--KLGKYEEALEDYEK 59

Query: 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
           A   +   A A   L   ++ LG+ EEA   Y+K LE
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 39/214 (18%), Positives = 82/214 (38%), Gaps = 4/214 (1%)

Query: 292 FEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG 351
           FE++L  DP  +  +   + +               +    +    E    +  YY  KG
Sbjct: 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581

Query: 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411
           Q +K++     A     +   AW ++G   +   +   A+ ++++ + + P    A   L
Sbjct: 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641

Query: 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY-ETEQLHMLEEAIKCYRRAANC 470
             AY +M     A+   ++++ L+P+++   I +AQ     ++    E A K  +     
Sbjct: 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR---TESAKKIAKSLQKQ 698

Query: 471 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504
           +   A+       L+        A   Y+K L+R
Sbjct: 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 53.3 bits (126), Expect = 1e-07
 Identities = 56/256 (21%), Positives = 95/256 (37%), Gaps = 11/256 (4%)

Query: 257 KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK 316
             E L    + +  +          L E  +   + EE L   P       +    L   
Sbjct: 11  LLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALL 70

Query: 317 ECF----SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS 372
           +      +                 E+   +G      G++E+++    +AL LD +   
Sbjct: 71  KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL 130

Query: 373 AWTLMGHE-YVEMKNTPAAIDAYRRAVDINPRDYR---AWYGLGQAYEMMHMPLYALHYF 428
           A  L+      E+ +   A++ Y +A++++P       A   LG   E +     AL   
Sbjct: 131 AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190

Query: 429 RKSVFLQPNDS-RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 487
            K++ L P+D     + +   Y   +L   EEA++ Y +A   +   A AL  LA L   
Sbjct: 191 EKALKLNPDDDAEALLNLGLLYL--KLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248

Query: 488 LGRDEEAAFYYKKDLE 503
           LGR EEA    +K LE
Sbjct: 249 LGRYEEALEALEKALE 264

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 15/66 (22%), Positives = 38/66 (57%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            ++   +   Y   G++E+++  + +AL+LD +   A+  +G  Y ++     A++AY +
Sbjct: 34  ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93

Query: 397 AVDINP 402
           A++++P
Sbjct: 94  ALELDP 99

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 9/186 (4%)

Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
           +G  + ++  F + L +D   L A   +   Y+   N   A+    +A ++NP++     
Sbjct: 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

Query: 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469
            L Q Y        AL    ++    P+    W+ + +         L +A+  +++   
Sbjct: 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ--LAAGDLNKAVSSFKKLLA 629

Query: 470 CNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH 529
                A+AL  LA  +  +    +A    K+ LE         P+  EA I LA    A 
Sbjct: 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-------PDNTEAQIGLAQLLLAA 682

Query: 530 GRFEEA 535
            R E A
Sbjct: 683 KRTESA 688

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 13/60 (21%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-KNTPAAIDAYRRAVDINP 402
           GN     G +++++  + +AL+LD +   A+  +   Y+++ K+   A++   +A++++P
Sbjct: 10  GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH-MPLYALHYFRKS 431
           A   +G+   ++ +   AI+AY +A++++P +  A+Y L  AY  +      AL    K+
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 432 VFLQP 436
           + L P
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 30/225 (13%)

Query: 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406
           Y  K +++ +++  + AL+ D N   A  L+G  Y+ + +  AA    R+A+ +     +
Sbjct: 32  YLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQ 91

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
               L +AY +       L        L  ++    +   +      L  LE A K Y +
Sbjct: 92  VLPLLARAYLLQGKFQQVLDELPG-KTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ 150

Query: 467 AANCNDSEAIALNQLAKLHHALGRDEEA----------------AFYYKKDLERMEAEER 510
           A   +     A   LA+L  A  R +EA                A   K DL        
Sbjct: 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL-GNI 209

Query: 511 EG------------PNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
           E             PN +  L+ LAT     G FEEAE +   LL
Sbjct: 210 ELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 20/205 (9%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
           PE+  ++G      G   K+V  F++ L L  +   A  L+   Y  MKN   AI + +R
Sbjct: 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL-----WIAMAQCYET 451
           A+++ P +  A  GL Q          A    +      P  +        + + Q    
Sbjct: 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720

Query: 452 EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 511
             +    +A+K    + N             KLH AL      A    + ++ +EA  + 
Sbjct: 721 AAIQAYRKALKRAPSSQN-----------AIKLHRALLASGNTA----EAVKTLEAWLKT 765

Query: 512 GPNMVEALIFLATHCRAHGRFEEAE 536
            PN       LA    A   +++A 
Sbjct: 766 HPNDAVLRTALAELYLAQKDYDKAI 790

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 38/255 (14%), Positives = 88/255 (34%), Gaps = 9/255 (3%)

Query: 215 ELKSLCTSIDILNSLNLNNHWMKDYF--LASAYQELRMHKESLTKYEYLQGTFSFSNYIQ 272
               L  ++ ILN          + +  L  A        ++++ ++ L      S    
Sbjct: 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638

Query: 273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332
             +A A   ++ + +     +  L   P   +     + +L A +   +   +A  +   
Sbjct: 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698

Query: 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAID 392
                    + G+ Y  +  +  ++  +R+ALK   +  +A  L     +   NT  A+ 
Sbjct: 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVK 757

Query: 393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL-----WIAMAQ 447
                +  +P D      L + Y        A+ +++  V   P+++ +     W+   +
Sbjct: 758 TLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY-LE 816

Query: 448 CYETEQLHMLEEAIK 462
             +   L   E A+K
Sbjct: 817 LKDPRALEYAERALK 831

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 48.3 bits (113), Expect = 5e-06
 Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK--LDKNYLSAWTLMGHEYVEMKNTPAA 390
           +        ++       G+ E+++    +AL+  L  N   A   +G     +     A
Sbjct: 55  NSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114

Query: 391 IDAYRRAVDINPRDYRAWYGLG-QAYEMMHMPLYALHYFRKSVFLQPNDSRL-WIAMAQC 448
           ++   +A+ ++P    A   L   A   +     AL  + K++ L P  + L    +A  
Sbjct: 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG 174

Query: 449 YETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507
              E L   EEA++   +A   N D +A AL  L  L+  LG+ EEA  YY+K LE    
Sbjct: 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-- 232

Query: 508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545
                P+  EAL  LA      GR+EEA     + L+ 
Sbjct: 233 -----PDNAEALYNLALLLLELGRYEEALEALEKALEL 265

Length = 291

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 18/159 (11%)

Query: 351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA--- 407
           G  E +     +AL+ D +   A+  +   Y ++     A D++RRA+ +NP +      
Sbjct: 45  GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104

Query: 408 --WY--GLGQAYEMMHMPLYALHYFRKSVFLQ--PNDSRLWIAMAQCYETEQLHMLEEAI 461
              +    G+  +       A+  F +++     P  +R       C         ++A 
Sbjct: 105 YGTFLCQQGKYEQ-------AMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF--DKAE 155

Query: 462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500
           K   RA   +     +L +LA+L++  G+ ++A  Y ++
Sbjct: 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 24/70 (34%), Positives = 31/70 (44%)

Query: 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE 534
           A ALN LA +   LG  +EA    +K LE       + P    AL  LA    A G ++E
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 535 AEVYCTRLLD 544
           A  Y  + L 
Sbjct: 65  ALEYLEKALA 74

Length = 78

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 21/63 (33%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
           +    +   +   A+ A   A+   P    A   LG+A         A    R ++   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 437 NDS 439
           +D 
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------ 404
           G + ++     +AL+ D +Y  A  +  H Y ++     A ++YR+A+ + P +      
Sbjct: 49  GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108

Query: 405 YRAW-YGLG---QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460
           Y A+    G   +A +     L    Y   S      ++    A+       +    ++A
Sbjct: 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPS---DTLENLGLCAL-------KAGQFDQA 158

Query: 461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 510
            +  +RA   +     AL +LA+LH+  G    A  Y ++  +R  A+  
Sbjct: 159 EEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208

Length = 250

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 58/280 (20%), Positives = 100/280 (35%), Gaps = 12/280 (4%)

Query: 259 EYLQGTFS--FSNYIQAQIAKA-QYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA 315
           E LQ              +A A +Y L   EQ      ++L+  P       + +++   
Sbjct: 282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341

Query: 316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT 375
                            D   P +  ++G  Y   G  EK+  Y  +A +LD    +A T
Sbjct: 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAART 401

Query: 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
            +G   +   +   AI     A  ++P   RA   L  +Y        AL   +K    Q
Sbjct: 402 QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461

Query: 436 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495
           P+++ L   +   Y  +    L +A + + +A +       A   LA++    G  ++A 
Sbjct: 462 PDNASLHNLLGAIYLGKGD--LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519

Query: 496 FYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
             ++K L          P  + A++ LA      G  EEA
Sbjct: 520 QRFEKVL-------TIDPKNLRAILALAGLYLRTGNEEEA 552

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD-EEAA 495
           +++     +       +L   +EAI+ Y +A   +   A A   LA  +  LG+D EEA 
Sbjct: 1   DNAEALKNLGNALF--KLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEAL 58

Query: 496 FYYKKDLE 503
              +K LE
Sbjct: 59  EDLEKALE 66

Length = 69

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 483
           AL  F+      P +SR W+ +A C   + L   EEAI  Y  AA  +  +       A+
Sbjct: 36  ALKLFQLLAAYDPYNSRYWLGLAACC--QMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93

Query: 484 LHHALGRDEEA 494
              ALG  E A
Sbjct: 94  CLLALGEPESA 104

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 382 VEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND--- 438
           V+      AI   ++AV  NP+D  A   LGQAY        A+  F K++ L P+    
Sbjct: 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339

Query: 439 ---------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489
                    +R W+ + Q     + + L +A + Y++A   +++++ A+  L  +  A  
Sbjct: 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK 399

Query: 490 RDEEAAFYYKKDLERMEA 507
               A  YY++ L RM+ 
Sbjct: 400 DYAAAERYYQQAL-RMDP 416

Length = 1157

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
            +  A   LG A   +     A+  + K++ L P+++  +  +A  Y  +     EEA++
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYL-KLGKDYEEALE 59

Query: 463 CYRRA 467
              +A
Sbjct: 60  DLEKA 64

Length = 69

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 36/175 (20%), Positives = 57/175 (32%), Gaps = 10/175 (5%)

Query: 362 RALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP 421
            A+  +   LS   L    Y+      +     +++    P+D       G+        
Sbjct: 58  AAVLRNPEDLSIAKLATALYLRGDADSSLA-VLQKSAIAYPKDRELLAAQGKNQIRNGNF 116

Query: 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481
             A+   RK+  L P D   W  +    +  QL   +EA + YR+A     +E    N L
Sbjct: 117 GEAVSVLRKAARLAPTDWEAWNLLGAALD--QLGRFDEARRAYRQALELAPNEPSIANNL 174

Query: 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE 536
                  G  E+A            A+ R   N+   +          G F EAE
Sbjct: 175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG-------LQGDFREAE 222

Length = 257

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 42.5 bits (98), Expect = 3e-04
 Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 8/251 (3%)

Query: 217 KSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIA 276
           ++L    + L  L  ++       LA A  +L   +E+L   E         N  +A + 
Sbjct: 41  EALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLN 100

Query: 277 KAQY--SLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF--SALSYL--AHRVF 330
                 +L ++E+   + E+ L  DP       + +     +      AL     A  + 
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD 160

Query: 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-YLSAWTLMGHEYVEMKNTPA 389
                  E+   +G      G++E+++    +ALKL+ +    A   +G  Y+++     
Sbjct: 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220

Query: 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449
           A++ Y +A++++P +  A Y L      +     AL    K++ L P+   L +A+    
Sbjct: 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLL 280

Query: 450 ETEQLHMLEEA 460
             E L +LE+A
Sbjct: 281 A-EALELLEKA 290

Length = 291

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 430 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489
           K++   P+D   ++A+A  Y+      LE+A   +RRA   N +    LN         G
Sbjct: 56  KALEHDPDDYLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113

Query: 490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG-- 547
           + E+A   +++ +E     +         L  L       G F++AE Y TR L      
Sbjct: 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-----GDFDKAEKYLTRALQIDPQR 168

Query: 548 PVSFTHLKNL 557
           P S   L  L
Sbjct: 169 PESLLELAEL 178

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSA------------WTLM--GHEYVEMKNTP 388
           +G  YS +G   ++V  F +AL LD +  +             W L+  G   ++  N  
Sbjct: 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA 368

Query: 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
            A   Y++A  ++  D  A  GLG           A  Y+++++ + P ++
Sbjct: 369 QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419

Length = 1157

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDE 492
                +A      +L   +EA++   +A          +   A ALN LA+L+ ALG  +
Sbjct: 6   AALNNLALVLR--RLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63

Query: 493 EAAFYYKKDLERMEA 507
           EA  Y +K L   EA
Sbjct: 64  EALEYLEKALALREA 78

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 8/32 (25%), Positives = 20/32 (62%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404
           A   +G+ Y+++     A++ Y +A+++NP +
Sbjct: 3   ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 459
            +P + R W GL    +M+     A+  +  +  L P+D R +   A+C     L   E 
Sbjct: 46  YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL--LALGEPES 103

Query: 460 AIKCYRRA-ANCNDSE 474
           A+K    A   C ++ 
Sbjct: 104 ALKALDLAIEICGENP 119

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 19/92 (20%), Positives = 33/92 (35%)

Query: 360 FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419
            +  +    +      L G   +E      AI+  ++A+ ++P        L QA     
Sbjct: 329 LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388

Query: 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451
            P  A+    + +F  P D   W  +AQ Y  
Sbjct: 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420

Length = 484

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY 370
            E+   +GN Y   G +++++ Y+ +AL+LD N 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	557
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	100.0
KOG1126	638	consensus DNA-binding cell division cycle control	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.98
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.98
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.97
KOG1126	638	consensus DNA-binding cell division cycle control	99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
KOG2003	840	consensus TPR repeat-containing protein [General f	99.95
PRK14574	822	hmsH outer membrane protein; Provisional	99.95
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.94
PF04049	142	APC8: Anaphase promoting complex subunit 8 / Cdc23	99.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.92
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.92
KOG2076	895	consensus RNA polymerase III transcription factor	99.92
PRK14574	822	hmsH outer membrane protein; Provisional	99.92
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.92
KOG1129	478	consensus TPR repeat-containing protein [General f	99.92
KOG2076	895	consensus RNA polymerase III transcription factor	99.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.91
KOG2003	840	consensus TPR repeat-containing protein [General f	99.9
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.9
PLN03218	1060	maturation of RBCL 1; Provisional	99.9
KOG1125	579	consensus TPR repeat-containing protein [General f	99.9
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.9
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.9
PRK12370	553	invasion protein regulator; Provisional	99.9
PRK12370	553	invasion protein regulator; Provisional	99.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.9
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.89
PRK11189	296	lipoprotein NlpI; Provisional	99.89
KOG1129	478	consensus TPR repeat-containing protein [General f	99.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.88
PLN03218	1060	maturation of RBCL 1; Provisional	99.87
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.86
PRK11189	296	lipoprotein NlpI; Provisional	99.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.86
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.86
KOG1125	579	consensus TPR repeat-containing protein [General f	99.86
PLN03077	857	Protein ECB2; Provisional	99.84
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.84
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.84
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.84
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.83
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.83
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.83
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.82
PLN03077	857	Protein ECB2; Provisional	99.82
PLN02789	320	farnesyltranstransferase	99.82
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.82
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.81
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.8
PLN02789	320	farnesyltranstransferase	99.8
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.78
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.75
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.7
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.7
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.67
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.66
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.65
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.63
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.62
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.62
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.6
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.58
PRK04841	903	transcriptional regulator MalT; Provisional	99.57
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.56
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.56
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.53
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.52
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.51
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
KOG0553	304	consensus TPR repeat-containing protein [General f	99.46
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.46
KOG0553	304	consensus TPR repeat-containing protein [General f	99.43
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.43
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.43
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.37
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.35
PRK04841	903	transcriptional regulator MalT; Provisional	99.34
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.27
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.17
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.17
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.17
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.15
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.15
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.14
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.13
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.13
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.12
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.09
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.09
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.09
PRK15331	165	chaperone protein SicA; Provisional	99.08
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.07
KOG2471	696	consensus TPR repeat-containing protein [General f	99.07
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.07
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.06
PRK11906	458	transcriptional regulator; Provisional	99.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.04
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.04
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.04
PRK15331	165	chaperone protein SicA; Provisional	99.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.02
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.99
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.99
PRK11906	458	transcriptional regulator; Provisional	98.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.98
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.98
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.98
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.96
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.94
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.94
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.92
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.92
PRK10803	263	tol-pal system protein YbgF; Provisional	98.88
PF12688	120	TPR_5: Tetratrico peptide repeat	98.87
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.87
PRK10803	263	tol-pal system protein YbgF; Provisional	98.87
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.86
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.85
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.82
PF12688	120	TPR_5: Tetratrico peptide repeat	98.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.82
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.81
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.8
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.78
KOG4234	271	consensus TPR repeat-containing protein [General f	98.75
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.74
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.72
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.69
KOG2471	696	consensus TPR repeat-containing protein [General f	98.67
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.65
PF13512	142	TPR_18: Tetratricopeptide repeat	98.62
KOG4234	271	consensus TPR repeat-containing protein [General f	98.57
PF13512	142	TPR_18: Tetratricopeptide repeat	98.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.56
KOG1258	577	consensus mRNA processing protein [RNA processing	98.53
KOG4555	175	consensus TPR repeat-containing protein [Function	98.48
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.45
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.44
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.43
KOG4555	175	consensus TPR repeat-containing protein [Function	98.43
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.42
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.39
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.38
KOG1586	288	consensus Protein required for fusion of vesicles	98.38
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.38
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.35
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.35
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.34
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.34
KOG1585	308	consensus Protein required for fusion of vesicles	98.29
KOG1585	308	consensus Protein required for fusion of vesicles	98.28
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.28
KOG1586	288	consensus Protein required for fusion of vesicles	98.27
KOG1258	577	consensus mRNA processing protein [RNA processing	98.26
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.26
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.23
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.22
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.2
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.16
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.16
PF13428	44	TPR_14: Tetratricopeptide repeat	98.15
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.12
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.11
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.11
PF13428	44	TPR_14: Tetratricopeptide repeat	98.1
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.08
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.08
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.06
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	98.04
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.02
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.01
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.99
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.92
PF13431	34	TPR_17: Tetratricopeptide repeat	97.91
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.89
PF13431	34	TPR_17: Tetratricopeptide repeat	97.88
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.87
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.86
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.85
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.85
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.83
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.82
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.81
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.81
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.72
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.7
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.61
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.59
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.58
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.58
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.56
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.55
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.53
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.53
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.48
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.47
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.46
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.42
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.42
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.39
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.39
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.35
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.27
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.2
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.17
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.14
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.13
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.08
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.05
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.03
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.96
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.88
PRK11619	644	lytic murein transglycosylase; Provisional	96.76
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.67
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.66
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.48
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.48
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.48
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.47
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.42
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.37
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.28
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.27
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.21
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.17
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.15
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.11
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.09
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.99
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.99
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.97
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.97
PRK10941	269	hypothetical protein; Provisional	95.93
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.91
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.9
PRK10941	269	hypothetical protein; Provisional	95.88
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.85
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.82
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.58
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.48
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.43
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.25
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.24
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.19
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.08
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.01
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.01
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.99
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.99
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.9
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.85
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.83
KOG2422	665	consensus Uncharacterized conserved protein [Funct	94.71
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.64
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.64
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.32
KOG1310	758	consensus WD40 repeat protein [General function pr	94.25
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.15
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.87
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.86
KOG3364	149	consensus Membrane protein involved in organellar	93.82
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	93.77
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.76
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.72
KOG1310	758	consensus WD40 repeat protein [General function pr	93.68
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.67
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.65
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.37
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.35
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.33
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.25
KOG3364	149	consensus Membrane protein involved in organellar	93.11
PRK11619	644	lytic murein transglycosylase; Provisional	93.02
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.0
KOG4014	248	consensus Uncharacterized conserved protein (conta	92.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.78
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.64
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	92.33
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.26
KOG2422	665	consensus Uncharacterized conserved protein [Funct	92.08
COG2912	269	Uncharacterized conserved protein [Function unknow	91.97
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.82
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	91.78
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.65
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.63
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	91.63
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.51
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.35
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	91.33
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	91.0
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.87
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.83
COG2912	269	Uncharacterized conserved protein [Function unknow	90.78
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.59
KOG4014	248	consensus Uncharacterized conserved protein (conta	90.51
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.33
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.24
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.21
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.78
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.53
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.47
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.29
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.17
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.25
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.89
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.84
COG3947	361	Response regulator containing CheY-like receiver a	87.7
COG3947	361	Response regulator containing CheY-like receiver a	87.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	87.54
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	87.42
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.96
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.3
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.08
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.34
COG5159	421	RPN6 26S proteasome regulatory complex component [	85.31
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.24
PF12854	34	PPR_1: PPR repeat	84.76
PF13041	50	PPR_2: PPR repeat family	84.22
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.13
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.8
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.68
KOG1463	411	consensus 26S proteasome regulatory complex, subun	83.44
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	82.87
KOG0687	393	consensus 26S proteasome regulatory complex, subun	82.16
PF13041	50	PPR_2: PPR repeat family	82.11
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.78
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	80.35

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-70  Score=496.21  Aligned_cols=517  Identities=53%  Similarity=0.854  Sum_probs=482.2

Q ss_pred             ChHHHHHHHHHHHH-HHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCC
Q 008705            3 SKESCRNELRSAIR-QLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTP   81 (557)
Q Consensus         3 ~~~~~~~~l~~~~~-~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (557)
                      .++.+|.+|...+. ++.+|||.++.||+|+.++++|....+                               +....++
T Consensus        21 ~l~~~r~ql~~~~~~~~~~rgl~~~~~w~a~~~~~~p~~~~~-------------------------------e~~~~~~   69 (559)
T KOG1155|consen   21 ALEWIRQQLLGICFAETRERGLAHAPKWSAENLLSLPLRMIG-------------------------------EFQTRPP   69 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCcccC-------------------------------cccCCCC
Confidence            35677888888888 699999999999999999999543211                               0001123


Q ss_pred             CccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHH
Q 008705           82 VMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISL  161 (557)
Q Consensus        82 ~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (557)
                      .+++|...+.+.|++|++||++++|+||..+|+++.+....|+++|+.|++|+++..++..++.+...+....+..+..+
T Consensus        70 ~p~ed~~~~~~~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L  149 (559)
T KOG1155|consen   70 IPEEDQVLEKDIYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIEL  149 (559)
T ss_pred             CCCcchhhhcchhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHH
Confidence            45566567789999999999999999999999999999999999999999999999999999988888888899999999


Q ss_pred             HHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcC--CC--hhHHH
Q 008705          162 ERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLN--LN--NHWMK  237 (557)
Q Consensus       162 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~--~~--~~~~~  237 (557)
                      .+.++...-....|++.+|+.|.++.+.|+...|+..|..++...|.+|+||..|..++...+.+..+.  .+  .+||.
T Consensus       150 ~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~  229 (559)
T KOG1155|consen  150 NKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMK  229 (559)
T ss_pred             hhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHH
Confidence            999999888889999999999999999999999999999999999999999999999999998877653  44  89999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK  316 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  316 (557)
                      .+|++.++....+.++++.-++..... +|.+..+..+.|.+.+...++++|+..|+.+.+.+|.+.+.++.++++++.+
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~  309 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence            999999999999999999999999987 9999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                      ++..++..+++.+..+++.+|+++|.+|++|...+++++|+.+|++|+++||....+|+.+|+.|+++++...|++.|++
T Consensus       310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      |++++|.|.++|++||++|..++++..|+.+|++|+...|+|+++|..+|.||.+  .++.++|++||.+++.....+..
T Consensus       390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k--l~~~~eAiKCykrai~~~dte~~  467 (559)
T KOG1155|consen  390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK--LNRLEEAIKCYKRAILLGDTEGS  467 (559)
T ss_pred             HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--hccHHHHHHHHHHHHhccccchH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTH  553 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a  553 (557)
                      ++..||.+|.++++..+|..+|++.++.....+...|+...+..+||..+.+.+++++|..+..+++..+ +..+++
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~-~e~eea  543 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE-TECEEA  543 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC-chHHHH
Confidence            9999999999999999999999999997777777788899999999999999999999999999999984 544443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2e-46  Score=352.70  Aligned_cols=435  Identities=18%  Similarity=0.178  Sum_probs=381.9

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcC----CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTG----RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS  166 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  166 (557)
                      .++..||.-.|..|+|.+|.+.-.-+-.    .....+-.-+.+..+.  +.+.....                    -.
T Consensus        49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~--r~d~s~a~--------------------~~  106 (966)
T KOG4626|consen   49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS--RLDKSSAG--------------------SL  106 (966)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc--chhhhhhh--------------------hh
Confidence            6688999999999999999987654422    1122222222233221  22222110                    00


Q ss_pred             hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh--------cC-CChhHHH
Q 008705          167 TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS--------LN-LNNHWMK  237 (557)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~--------l~-~~~~~~~  237 (557)
                      ...+.+|.-++++-.+|.++...|++++|+..|+.++++.|++.++|..++.++...+....        +. .|..+..
T Consensus       107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca  186 (966)
T KOG4626|consen  107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA  186 (966)
T ss_pred             hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence            12234677788888888888888888888888888888888888888888887766554433        22 3444555


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE  317 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  317 (557)
                      .-.+|.++...|+..+|..+|.++++..|....+|..+|.++..+|+...|+..|+++++++|+..+++..+++++...+
T Consensus       187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~  266 (966)
T KOG4626|consen  187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR  266 (966)
T ss_pred             hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence            56679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705          318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                      .++.+...+.+++...|..+.++.++|.+|+.+|..+-|+..|++++++.|+++.++.++|..+...|+..+|..+|.++
T Consensus       267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH
Q 008705          398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA  477 (557)
Q Consensus       398 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  477 (557)
                      +.+.|+.+++.++||.+|..+|++++|..+|.++++..|..+.+..++|.+|..  +|++++|+.+|+.++.+.|...++
T Consensus       347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq--qgnl~~Ai~~YkealrI~P~fAda  424 (966)
T KOG4626|consen  347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ--QGNLDDAIMCYKEALRIKPTFADA  424 (966)
T ss_pred             HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh--cccHHHHHHHHHHHHhcCchHHHH
Confidence            999999999999999999999999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhcC
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL  557 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~~L  557 (557)
                      +.++|..|..+|+...|+.+|.+++.       .+|..++++.+||.+|...|+..+|+..|+.++++. |+..+++.||
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~-------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNl  496 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQ-------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNL  496 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHh-------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHH
Confidence            99999999999999999999999999       899999999999999999999999999999999998 5566666653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-44  Score=338.30  Aligned_cols=390  Identities=18%  Similarity=0.157  Sum_probs=338.1

Q ss_pred             HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh--------c
Q 008705          158 LISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS--------L  229 (557)
Q Consensus       158 l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~--------l  229 (557)
                      +.++++........+|.+...+.+++.++++..+++.....-..+++..|...+++..+++.+...+.+..        +
T Consensus        64 ~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~ai  143 (966)
T KOG4626|consen   64 YKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAI  143 (966)
T ss_pred             HHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            44444555555567788888999999999999999999999999999999999999999888777666543        2


Q ss_pred             -CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH
Q 008705          230 -NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM  308 (557)
Q Consensus       230 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  308 (557)
                       ..|+....+..+|.++...|+.+.|.++|..+++++|....+...+|..+...|+..+|..+|.++++..|...-+|..
T Consensus       144 el~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsn  223 (966)
T KOG4626|consen  144 ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSN  223 (966)
T ss_pred             hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehh
Confidence             2455566667788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch
Q 008705          309 YSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP  388 (557)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  388 (557)
                      ++.++...|+...++..+.+++.++|.-+++++++|++|...+.+++|+.+|.+|+.+.|++..++-++|.+|.++|..+
T Consensus       224 Lg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld  303 (966)
T KOG4626|consen  224 LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD  303 (966)
T ss_pred             cchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence            88888888888888888888899999988999999999999999999999999999888998888888999999999999


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705          389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA  468 (557)
Q Consensus       389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al  468 (557)
                      -||..|++++++.|+.+.++.++|.++-..|+..+|..+|.+++.+.|+.+++.+++|.++..  +|.+++|..+|++++
T Consensus       304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E--~~~~e~A~~ly~~al  381 (966)
T KOG4626|consen  304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE--QGKIEEATRLYLKAL  381 (966)
T ss_pred             HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hccchHHHHHHHHHH
Confidence            999999999999998899999999999888999999999999999999999999999999988  899999999999999


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      ...|....+..+||.+|.++|++++|+.+|++++.       ..|..++++.++|..|..+|+.+.|+..|.+++.++ |
T Consensus       382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-P  453 (966)
T KOG4626|consen  382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-P  453 (966)
T ss_pred             hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-c
Confidence            99998888999999999999999999999999988       788889999999999999999999999999999987 4


Q ss_pred             chhhhhhcC
Q 008705          549 VSFTHLKNL  557 (557)
Q Consensus       549 ~~~~a~~~L  557 (557)
                      ...++++||
T Consensus       454 t~AeAhsNL  462 (966)
T KOG4626|consen  454 TFAEAHSNL  462 (966)
T ss_pred             HHHHHHhhH
Confidence            555666664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-35  Score=278.15  Aligned_cols=483  Identities=22%  Similarity=0.237  Sum_probs=374.8

Q ss_pred             HHHHHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCCCccccc
Q 008705            8 RNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDE   87 (557)
Q Consensus         8 ~~~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (557)
                      ....|+.+|++.+...|++|+++||.+.++..+                                               
T Consensus        16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d-----------------------------------------------   48 (611)
T KOG1173|consen   16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTND-----------------------------------------------   48 (611)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC-----------------------------------------------
Confidence            456777888999999999999999999999732                                               


Q ss_pred             cchhhHHHHHHHhhhhhhHHHHHHHHhhhcCC--chhhHHHHHHHHhhcccchHHHHHhhCCCC-CchhhchhHHHHHHH
Q 008705           88 VEDSDFYLLAKSYFDCREYRRAAHVLRDQTGR--RSVFLRCYALYLAGEKRKEEEMIELEGPLG-KSNAVNRELISLERE  164 (557)
Q Consensus        88 ~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~  164 (557)
                        +.+.|++|++++-.|+|.||.+.+....-.  .-....++ .++.-..+...++..+.+... ...........+...
T Consensus        49 --p~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~-~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~  125 (611)
T KOG1173|consen   49 --PADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLA-AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT  125 (611)
T ss_pred             --hHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence              278999999999999999999999876431  12222222 222223334555554433110 001111111111111


Q ss_pred             Hhh--hhc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHh--hhcHHH---HhhcCCChhH
Q 008705          165 LST--SWK--NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSL--CTSIDI---LNSLNLNNHW  235 (557)
Q Consensus       165 l~~--~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~--~~~~~~---~~~l~~~~~~  235 (557)
                      +..  ...  ........++++|.+|....++++|...|.+++..++.+.++...+...  ....+.   +.++......
T Consensus       126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~  205 (611)
T KOG1173|consen  126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT  205 (611)
T ss_pred             eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence            110  000  0122355899999999999999999999999999999999998877552  222122   2221111000


Q ss_pred             HHHHHHHHHHHHHh----hhHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 008705          236 MKDYFLASAYQELR----MHKESLTKYE-YLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYS  310 (557)
Q Consensus       236 ~~~~~la~~~~~~~----~~~~A~~~~~-~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  310 (557)
                      ....-.-..+++..    ..+++...-. .-+..-.+++++....+..++..++|.+..++++.+++.+|.+.+.+....
T Consensus       206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i  285 (611)
T KOG1173|consen  206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI  285 (611)
T ss_pred             hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence            00000001111100    0001110000 111112347788999999999999999999999999999999999998888


Q ss_pred             HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHH
Q 008705          311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA  390 (557)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  390 (557)
                      .+++..++..++..+.++++...|..+-+|+.+|.+|...|++.+|.++|.++..++|.+..+|...|+.|.-.|.-++|
T Consensus       286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA  365 (611)
T KOG1173|consen  286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA  365 (611)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705          391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC  470 (557)
Q Consensus       391 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~  470 (557)
                      +.+|..|-++.|........+|.-|...+++.-|..+|.+|+.+.|.+|-++..+|.+.+.  .+.|.+|..+|++++..
T Consensus       366 maaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~--~~~y~~A~~~f~~~l~~  443 (611)
T KOG1173|consen  366 MAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT--YEEYPEALKYFQKALEV  443 (611)
T ss_pred             HHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh--HhhhHHHHHHHHHHHHH
Confidence            9999999999999988899999999999999999999999999999999999999999999  99999999999999843


Q ss_pred             C----C---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          471 N----D---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       471 ~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      -    +   .....+.+||.++.+++++++|+.+|++++.       ..|.++.++..+|.+|..+|+++.|+++|.+++
T Consensus       444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~-------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL-------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            2    1   2344789999999999999999999999999       789999999999999999999999999999999


Q ss_pred             ccCCCc
Q 008705          544 DYTGPV  549 (557)
Q Consensus       544 ~~~~~~  549 (557)
                      .+.|.+
T Consensus       517 ~l~p~n  522 (611)
T KOG1173|consen  517 ALKPDN  522 (611)
T ss_pred             hcCCcc
Confidence            999877

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.3e-37  Score=292.49  Aligned_cols=302  Identities=28%  Similarity=0.456  Sum_probs=291.6

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      .|......-+..+|+..|++.....++..+++.++|+.|+.+++|++|..+|+.+-+..|...+.+..++.+++..++.-
T Consensus       325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v  404 (638)
T KOG1126|consen  325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV  404 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence            34445556667899999999878888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI  400 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  400 (557)
                      ++..+++.++..+|+.|++||.+|++|..+++++.|+++|++|++++|++..+|+.+|+.+.....++.|..+|+.|+..
T Consensus       405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705          401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ  480 (557)
Q Consensus       401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  480 (557)
                      +|++..+|+++|.+|.++++++.|.-+|++|++++|.+..+...+|.++.+  .|+.++|+..|++|+.++|.++-..+.
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~--~k~~d~AL~~~~~A~~ld~kn~l~~~~  562 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ--LKRKDKALQLYEKAIHLDPKNPLCKYH  562 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH--hhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence            999999999999999999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      .|.++...+++++|+..+++..+       ..|+...+++.+|++|.+.|+.+.|+..|.-|.+++|+...
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~-------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKE-------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            99999999999999999999888       78999999999999999999999999999999999987654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=8.8e-35  Score=321.95  Aligned_cols=443  Identities=14%  Similarity=0.093  Sum_probs=327.2

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcCC---chhhHHHHHHHHhhcccchHHHHHhhCC---CC-C----------ch
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGR---RSVFLRCYALYLAGEKRKEEEMIELEGP---LG-K----------SN  152 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~---~~-~----------~~  152 (557)
                      ....+.++.++...|++++|..+++.....   .+......+.. ....+..+++......   +. .          ..
T Consensus       431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  509 (899)
T TIGR02917       431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI-YLGKGDLAKAREAFEKALSIEPDFFPAAANLARID  509 (899)
T ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            345566677777778888887777766542   12222222221 1223334433332100   00 0          00


Q ss_pred             hhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHh-----
Q 008705          153 AVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILN-----  227 (557)
Q Consensus       153 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~-----  227 (557)
                      ...+.+..+...+++.....|.+..++..+|.++...|++++|+..|++++..+|.+...+..++.++...+...     
T Consensus       510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  589 (899)
T TIGR02917       510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI  589 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHH
Confidence            112345556666666666677778888888888888888888888888888888887777777766544332221     


Q ss_pred             --hc--CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705          228 --SL--NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV  303 (557)
Q Consensus       228 --~l--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  303 (557)
                        ..  ..+......+.+|.++...|++++|+..|+++++..|.++..+..+|.++...|++++|+..|+++++.+|.+.
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  669 (899)
T TIGR02917       590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT  669 (899)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence              11  12344445566788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705          304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE  383 (557)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  383 (557)
                      ..+..++.++...++.+++..++..+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++..
T Consensus       670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~  748 (899)
T TIGR02917       670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLA  748 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888887776 667778888888


Q ss_pred             cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~  463 (557)
                      .|++++|+..+++++..+|++..+++.+|.++...|++++|+..|+++++..|+++.++..+|.++..  .|+ .+|+..
T Consensus       749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~~~-~~A~~~  825 (899)
T TIGR02917       749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE--LKD-PRALEY  825 (899)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cCc-HHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888  888 778888


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      +++++...|+++.++..+|.++...|++++|+.+|+++++       ..|.++.++..++.++.+.|++++|.+.+++++
T Consensus       826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN-------IAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            8888888888888888888888888888888888888887       577788888888888888888888888888776


Q ss_pred             c
Q 008705          544 D  544 (557)
Q Consensus       544 ~  544 (557)
                      +
T Consensus       899 ~  899 (899)
T TIGR02917       899 N  899 (899)
T ss_pred             C
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=9.7e-35  Score=321.63  Aligned_cols=451  Identities=18%  Similarity=0.144  Sum_probs=314.8

Q ss_pred             ccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchh---hHHHHHHHHhhcccchHHHHHhhCC---CC-C---------
Q 008705           87 EVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSV---FLRCYALYLAGEKRKEEEMIELEGP---LG-K---------  150 (557)
Q Consensus        87 ~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~~~~~---~~-~---------  150 (557)
                      |......+.+|.+++..|++++|..+|+++....+.   .....+.... ..+..+++......   .. .         
T Consensus       360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  438 (899)
T TIGR02917       360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL-SQGDPSEAIADLETAAQLDPELGRADLLLI  438 (899)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence            334466777899999999999999999887553221   1111111111 22223322221100   00 0         


Q ss_pred             -chhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHh--
Q 008705          151 -SNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILN--  227 (557)
Q Consensus       151 -~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~--  227 (557)
                       .....+....+...+.......|.++..++.+|.++...|++++|+..|+++++.+|.+..++..++.+....+...  
T Consensus       439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  518 (899)
T TIGR02917       439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA  518 (899)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence             00122344555555555555666666677777777777777777777777777777766666666655433221111  


Q ss_pred             -----hc------------------------------------CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705          228 -----SL------------------------------------NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS  266 (557)
Q Consensus       228 -----~l------------------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  266 (557)
                           .+                                    ..+......+.++.++...|++++|+..+++++...|
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  598 (899)
T TIGR02917       519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP  598 (899)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence                 00                                    1222233334456666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705          267 FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY  346 (557)
Q Consensus       267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  346 (557)
                      .++.++..+|.++...|++++|+..|+++++..|.+...+..++.++...++++++...+++++..+|.+..++..++.+
T Consensus       599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  678 (899)
T TIGR02917       599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL  678 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            66666666677776677777777777777666666666666666666666777777666666666666666667777777


Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                      +...|++++|+..++++....|.....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+.
T Consensus       679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~  757 (899)
T TIGR02917       679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVK  757 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHH
Confidence            7777777777777777666666677777778888888888888888888888888766 667778888888888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705          427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      .++++++..|+++.++..+|.++..  .|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.+++++++   
T Consensus       758 ~~~~~l~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~---  831 (899)
T TIGR02917       758 TLEAWLKTHPNDAVLRTALAELYLA--QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK---  831 (899)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh---
Confidence            8888888888888888899999988  8999999999999999889888889999999999988 779999999888   


Q ss_pred             hhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          507 AEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       507 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                          ..|+++..+..+|.++...|++++|..+|+++++.+|.+
T Consensus       832 ----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  870 (899)
T TIGR02917       832 ----LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA  870 (899)
T ss_pred             ----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence                678888999999999999999999999999999998763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.3e-34  Score=302.63  Aligned_cols=397  Identities=13%  Similarity=0.038  Sum_probs=309.7

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhhcCCchh--hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705           93 FYLLAKSYFDCREYRRAAHVLRDQTGRRSV--FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK  170 (557)
Q Consensus        93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~~~--~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  170 (557)
                      ....|..+|..|+|++|+..|++++...+.  +....+..+. .                    .+++..+...+...++
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~-~--------------------l~~~~~Ai~~~~~al~  188 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHN-A--------------------LGDWEKVVEDTTAALE  188 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-H--------------------hCCHHHHHHHHHHHHH
Confidence            446799999999999999999998663332  1111111111 1                    1223334444555556


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhh
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRM  250 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~  250 (557)
                      .+|+++.+++.+|.++...|++++|+..|..+...++.+......+                         ......   
T Consensus       189 l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~l~---  240 (615)
T TIGR00990       189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA-------------------------VERLLK---  240 (615)
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH-------------------------HHHHHH---
Confidence            6777777777777777777777777777776666555443211111                         000011   


Q ss_pred             hHHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHH---HhcccHHHHHHHHHH
Q 008705          251 HKESLTKYEYLQGTFSFS---------------------------------NYIQAQIAKAQ---YSLREFEQVEVIFEE  294 (557)
Q Consensus       251 ~~~A~~~~~~~l~~~p~~---------------------------------~~~~~~la~~~---~~~g~~~~A~~~~~~  294 (557)
                       ..+...+..++...|.+                                 ...+..++..+   ...++|++|+..|++
T Consensus       241 -~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~  319 (615)
T TIGR00990       241 -KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK  319 (615)
T ss_pred             -HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence             12222233333333322                                 11222233222   123689999999999


Q ss_pred             HHHhC---CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH
Q 008705          295 LLRND---PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL  371 (557)
Q Consensus       295 ~l~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  371 (557)
                      ++...   |....++..++.++...++++++...+++++..+|..+..++.+|.++...|++++|+..|+++++.+|+++
T Consensus       320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  399 (615)
T TIGR00990       320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP  399 (615)
T ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            99864   666677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      .+++.+|.++...|++++|+..|++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++..
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCChHHH------HHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSEAIA------LNQLAK-LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT  524 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~~~~------~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  524 (557)
                        .|++++|+..|++++.+.|.....      +...+. ++...|++++|+.++++++.       .+|++..++..+|.
T Consensus       480 --~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-------l~p~~~~a~~~la~  550 (615)
T TIGR00990       480 --QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-------IDPECDIAVATMAQ  550 (615)
T ss_pred             --ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCCCcHHHHHHHHH
Confidence              999999999999999998865332      223333 34457999999999999999       68999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCC
Q 008705          525 HCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       525 ~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      ++...|++++|+.+|++++++.+.
T Consensus       551 ~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       551 LLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHccCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.8e-33  Score=310.95  Aligned_cols=427  Identities=13%  Similarity=0.039  Sum_probs=323.0

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHH---HHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705           92 DFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLR---CYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS  168 (557)
Q Consensus        92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  168 (557)
                      ..+.+|+.++..|+|++|+..|++.....+.-..   .|...+....                    ....++...++++
T Consensus       114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~--------------------g~~~~A~~~L~~l  173 (1157)
T PRK11447        114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLP--------------------AQRPEAINQLQRL  173 (1157)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCC--------------------ccHHHHHHHHHHH
Confidence            4577899999999999999999998764322111   1111111111                    2344566668888


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHH---HHHHHHH-----------------hhhcH-----
Q 008705          169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWN---AWSELKS-----------------LCTSI-----  223 (557)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~l~~-----------------~~~~~-----  223 (557)
                      .+..|.++.+++.+|.++...|++++|+..|++++...+....   .|.....                 .....     
T Consensus       174 l~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~  253 (1157)
T PRK11447        174 NADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA  253 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence            8889999999999999999999999999999999876544322   1211100                 00000     


Q ss_pred             --HHHhhc--CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008705          224 --DILNSL--NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND  299 (557)
Q Consensus       224 --~~~~~l--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  299 (557)
                        ..+...  ...+.......+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+
T Consensus       254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~  333 (1157)
T PRK11447        254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD  333 (1157)
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence              000000  0011111123458899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcH--------------HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHh
Q 008705          300 PYRVDDM--------------DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK  365 (557)
Q Consensus       300 p~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  365 (557)
                      |.+....              ...+.++...++++++...+++++..+|.++.++..+|.++...|++++|+.+|+++++
T Consensus       334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~  413 (1157)
T PRK11447        334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR  413 (1157)
T ss_pred             CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9875421              23356677889999999999999999999999999999999999999999999999999


Q ss_pred             cCcCCHHHHHHHhH------------------------------------------HHHhcCCchHHHHHHHHHHhhCCC
Q 008705          366 LDKNYLSAWTLMGH------------------------------------------EYVEMKNTPAAIDAYRRAVDINPR  403 (557)
Q Consensus       366 ~~p~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~~al~~~p~  403 (557)
                      .+|.+..++..++.                                          ++...|++++|+..|+++++.+|+
T Consensus       414 ~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~  493 (1157)
T PRK11447        414 MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG  493 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            99998877655544                                          345679999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH---------------------------------------
Q 008705          404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA---------------------------------------  444 (557)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~---------------------------------------  444 (557)
                      ++.+++.+|.+|...|++++|+..|+++++..|+++..++.                                       
T Consensus       494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~  573 (1157)
T PRK11447        494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS  573 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence            99999999999999999999999999999988887665443                                       


Q ss_pred             -----------------------------------HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705          445 -----------------------------------MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG  489 (557)
Q Consensus       445 -----------------------------------l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  489 (557)
                                                         +|.++..  .|++++|+.+|++++..+|+++.++..++.++...|
T Consensus       574 ~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~--~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g  651 (1157)
T PRK11447        574 DQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ--RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG  651 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence                                               4444555  666666666666666666666666666777776667


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705          490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  547 (557)
                      ++++|+..++++++       ..|+++.++..+|.++...|++++|..+|++++...|
T Consensus       652 ~~~eA~~~l~~ll~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~  702 (1157)
T PRK11447        652 DLAAARAQLAKLPA-------TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK  702 (1157)
T ss_pred             CHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence            77777766666665       4566666666677777777777777777777766543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=7e-34  Score=315.78  Aligned_cols=443  Identities=13%  Similarity=0.063  Sum_probs=346.8

Q ss_pred             ccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchh--------------------hHHHHHHHHhhccc--chHHHH
Q 008705           85 EDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSV--------------------FLRCYALYLAGEKR--KEEEMI  142 (557)
Q Consensus        85 ~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~--------------------~l~~~~~~l~~~~~--~~~~~~  142 (557)
                      .+|......+.+|++++..|++++|+..|+++......                    .+..+..++.....  ....+.
T Consensus       176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~  255 (1157)
T PRK11447        176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR  255 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence            45666678889999999999999999999987542211                    11111111211100  001111


Q ss_pred             Hhh----CC----------CCCchhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC
Q 008705          143 ELE----GP----------LGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW  208 (557)
Q Consensus       143 ~~~----~~----------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  208 (557)
                      ...    ..          .+......+++..+...+++.++.+|.++.+++.+|.++.+.|++++|+..|+++++.+|.
T Consensus       256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~  335 (1157)
T PRK11447        256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH  335 (1157)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            000    00          0111123455677777777777777888888888888888888888888888888887776


Q ss_pred             CHH--HHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHH
Q 008705          209 NWN--AWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFE  286 (557)
Q Consensus       209 ~~~--a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  286 (557)
                      +..  .|..+.             ....+.....+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++
T Consensus       336 ~~~~~~~~~ll-------------~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~  402 (1157)
T PRK11447        336 SSNRDKWESLL-------------KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA  402 (1157)
T ss_pred             ccchhHHHHHH-------------HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            543  232220             01122223346888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCcHHHHHHHHH------------------------------------------hccchhHHHH
Q 008705          287 QVEVIFEELLRNDPYRVDDMDMYSNVLY------------------------------------------AKECFSALSY  324 (557)
Q Consensus       287 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~  324 (557)
                      +|+..|+++++.+|.+..++..++.++.                                          ..++++++..
T Consensus       403 eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~  482 (1157)
T PRK11447        403 AAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE  482 (1157)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999888777766542                                          3467778888


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH-------
Q 008705          325 LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA-------  397 (557)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-------  397 (557)
                      .+++++..+|.++.+++.+|.+|...|++++|+..++++++.+|.++.+++.++..+...+++++|+..++++       
T Consensus       483 ~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~  562 (1157)
T PRK11447        483 LQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS  562 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence            8888888888888888888888888899999999998888888888888888888888888888888887653       


Q ss_pred             ---------------------------------HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705          398 ---------------------------------VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA  444 (557)
Q Consensus       398 ---------------------------------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  444 (557)
                                                       ++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus       563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~  642 (1157)
T PRK11447        563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLG  642 (1157)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                                             23367777888999999999999999999999999999999999999


Q ss_pred             HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc---chHHHHHH
Q 008705          445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP---NMVEALIF  521 (557)
Q Consensus       445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~  521 (557)
                      ++.++..  .|++++|+..+++++...|+++.++..+|.++...|++++|+.+|++++...+    ..|   ....++..
T Consensus       643 la~~~~~--~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~----~~~~~~~~a~~~~~  716 (1157)
T PRK11447        643 LIEVDIA--QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK----SQPPSMESALVLRD  716 (1157)
T ss_pred             HHHHHHH--CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc----cCCcchhhHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999998310    112   23456777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          522 LATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       522 la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      +|.++...|++++|+..|++++...
T Consensus       717 ~a~~~~~~G~~~~A~~~y~~Al~~~  741 (1157)
T PRK11447        717 AARFEAQTGQPQQALETYKDAMVAS  741 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            8999999999999999999998744

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=7e-33  Score=289.71  Aligned_cols=340  Identities=15%  Similarity=0.119  Sum_probs=292.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      +..+..+|..++..|+|++|+..|++++...|+ ...+..                         +|.+|..+|++++|+
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n-------------------------~a~~~~~l~~~~~Ai  180 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSN-------------------------RAACHNALGDWEKVV  180 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHH-------------------------HHHHHHHhCCHHHHH
Confidence            456788999999999999999999999999996 444443                         499999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC------------------------------CCCc
Q 008705          256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY------------------------------RVDD  305 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------------------------~~~~  305 (557)
                      ..++++++.+|++..++..+|.++..+|++++|+..|..+...++.                              +...
T Consensus       181 ~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~  260 (615)
T TIGR00990       181 EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPS  260 (615)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999887666544332                              2222


Q ss_pred             HHHHHHHHH------------------------------------hccchhHHHHHHHHHHhh---CCCChhHHHHHHHH
Q 008705          306 MDMYSNVLY------------------------------------AKECFSALSYLAHRVFMT---DKYRPESCCIIGNY  346 (557)
Q Consensus       306 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~  346 (557)
                      +..++..+.                                    ..+.++++...+..++..   .|....++..+|.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~  340 (615)
T TIGR00990       261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF  340 (615)
T ss_pred             HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            222222111                                    113566777778888765   46677889999999


Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                      +...|++++|+..|++++.++|.+..+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus       341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  420 (615)
T TIGR00990       341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK  420 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705          427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      +|++++.++|++...+..+|.++..  +|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++   
T Consensus       421 ~~~kal~l~P~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---  495 (615)
T TIGR00990       421 DYQKSIDLDPDFIFSHIQLGVTQYK--EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---  495 (615)
T ss_pred             HHHHHHHcCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---
Confidence            9999999999999999999999999  99999999999999999999999999999999999999999999999999   


Q ss_pred             hhhcCCcchHH------HHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          507 AEEREGPNMVE------ALIFLA-THCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       507 ~~~~~~~~~~~------~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                          ..|....      .+...+ .++...|++++|..++++++.++|.+.
T Consensus       496 ----l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~  542 (615)
T TIGR00990       496 ----LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD  542 (615)
T ss_pred             ----cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence                4443222      122333 334457999999999999999986553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=4.2e-32  Score=282.65  Aligned_cols=322  Identities=14%  Similarity=0.006  Sum_probs=251.1

Q ss_pred             hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705          154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN  233 (557)
Q Consensus       154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~  233 (557)
                      ..+++..+...+.......|.++.+++.+|.+....|++++|+..|++++..+|.+..++..+                 
T Consensus        54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l-----------------  116 (656)
T PRK15174         54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV-----------------  116 (656)
T ss_pred             hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH-----------------
Confidence            345666777777777777888888888888888888888888888888888888888777655                 


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                              |.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|.+...+.... .+
T Consensus       117 --------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l  187 (656)
T PRK15174        117 --------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SF  187 (656)
T ss_pred             --------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HH
Confidence                    778888888888888888888888888888888888888888888888888888888887766554443 36


Q ss_pred             HhccchhHHHHHHHHHHhhCCC-ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH---
Q 008705          314 YAKECFSALSYLAHRVFMTDKY-RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA---  389 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---  389 (557)
                      ...++.+++...++.++..+|. .......++.++...|++++|+..|++++..+|+++.++..+|.++...|++++   
T Consensus       188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~  267 (656)
T PRK15174        188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKL  267 (656)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHH
Confidence            6677778887777777776653 333445557777778888888888888888888888888888888888888775   


Q ss_pred             -HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705          390 -AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA  468 (557)
Q Consensus       390 -A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al  468 (557)
                       |+..|++++..+|++..++..+|.++...|++++|+..+++++.++|+++.++..+|.++..  .|++++|+..|++++
T Consensus       268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~--~G~~~eA~~~l~~al  345 (656)
T PRK15174        268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ--VGQYTAASDEFVQLA  345 (656)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence             77888888888888888888888888888888888888888888888888888888888887  888888888888888


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ..+|.++..+..+|.++...|++++|+..|+++++
T Consensus       346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            87787776666677778888888888888888877

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=9.7e-32  Score=279.89  Aligned_cols=342  Identities=12%  Similarity=0.000  Sum_probs=318.8

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      .+.......+..+.+.|++++|...++.++...|.+..++..+                         |.+....|++++
T Consensus        40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l-------------------------~~~~l~~g~~~~   94 (656)
T PRK15174         40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRW-------------------------VISPLASSQPDA   94 (656)
T ss_pred             ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHH-------------------------hhhHhhcCCHHH
Confidence            4445567778888999999999999999999999999998777                         888889999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705          254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD  333 (557)
Q Consensus       254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (557)
                      |+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..++.++...++.+++...+..+....
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~  174 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV  174 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      |.++..+..++. +...|++++|+..+++++..+|. .......++.++...|++++|+..|++++..+|++..++..+|
T Consensus       175 P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg  253 (656)
T PRK15174        175 PPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG  253 (656)
T ss_pred             CCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999988877654 78899999999999999998763 3445566788999999999999999999999999999999999


Q ss_pred             HHHHHhCChHH----HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          413 QAYEMMHMPLY----ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       413 ~~~~~~~~~~~----A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      .++...|++++    |+..|++++..+|+++.++..+|.++..  .|++++|+..+++++..+|+++.++..+|.++...
T Consensus       254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~--~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~  331 (656)
T PRK15174        254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR--TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV  331 (656)
T ss_pred             HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            99999999996    8999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      |++++|+..|++++.       ..|..+..+..+|.++...|++++|...|+++++..|...
T Consensus       332 G~~~eA~~~l~~al~-------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        332 GQYTAASDEFVQLAR-------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             CCHHHHHHHHHHHHH-------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999999999998       6888888788889999999999999999999999987653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.2e-29  Score=223.39  Aligned_cols=369  Identities=18%  Similarity=0.162  Sum_probs=330.7

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh-------cCCChhHHHHHHHHHHHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS-------LNLNNHWMKDYFLASAYQ  246 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~-------l~~~~~~~~~~~la~~~~  246 (557)
                      ..|.....++..+.+-++..++.-.|...+...|--..+...+..+........+       +....+|...+..+.+..
T Consensus       128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~  207 (564)
T KOG1174|consen  128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM  207 (564)
T ss_pred             cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence            4577778888888888888899999999999999888777777777665555544       244567888777777777


Q ss_pred             HHhhhHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHH
Q 008705          247 ELRMHKESL--TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSY  324 (557)
Q Consensus       247 ~~~~~~~A~--~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  324 (557)
                      ..++...|.  .++-......|++...+..+|.+++..|++++|+..|+++...+|+...+++.++.++...++.+....
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence            777766555  455566778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC
Q 008705          325 LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD  404 (557)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  404 (557)
                      +...++..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|..+..+|+.++|+-.|+.|..+.|.+
T Consensus       288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA-QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK  483 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  483 (557)
                      .+.|.+|..+|...|++.+|...-+.+++..|.++..+..+| .++... -.--++|.+++++++.+.|....+...+|.
T Consensus       368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d-p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE  446 (564)
T KOG1174|consen  368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD-PRMREKAKKFAEKSLKINPIYTPAVNLIAE  446 (564)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC-chhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999997 444320 345589999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ++...|++++++..+++.+.       ..| +...+..||.++...+.+++|+++|..++.++|.+..
T Consensus       447 L~~~Eg~~~D~i~LLe~~L~-------~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  447 LCQVEGPTKDIIKLLEKHLI-------IFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HHHhhCccchHHHHHHHHHh-------hcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            99999999999999999998       444 5668999999999999999999999999999987654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.98  E-value=3.5e-29  Score=248.84  Aligned_cols=432  Identities=18%  Similarity=0.182  Sum_probs=360.4

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh-HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF-LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS  168 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  168 (557)
                      .+..|++|++|+.+|+|++|-.+|..++...+.+ +..  .                -.+++....++++..+...+++.
T Consensus       307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~--~----------------~GlgQm~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP--L----------------VGLGQMYIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc--c----------------cchhHHHHHhchHHHHHHHHHHH
Confidence            3567888888888888888888777776544332 111  1                12233344567778888889999


Q ss_pred             hcCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh-------------cCC
Q 008705          169 WKNGTVDPFGLYLYGIVLKDKG----NENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS-------------LNL  231 (557)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~-------------l~~  231 (557)
                      .+..|++......+|..|...+    ..+.|..+..++++..|.+..+|..++.++...+...+             ...
T Consensus       369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~  448 (1018)
T KOG2002|consen  369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGK  448 (1018)
T ss_pred             HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999886    77899999999999999999999999998664433222             122


Q ss_pred             ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-----CCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705          232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGT-----FSF-----SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY  301 (557)
Q Consensus       232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  301 (557)
                      +-.......+|..++..|++.+|...|.+++..     +++     +....+.+|+++...++++.|.+.|..+++..|.
T Consensus       449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence            223333456899999999999999999999876     222     2235899999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc--CCHHHHHHHhH
Q 008705          302 RVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--NYLSAWTLMGH  379 (557)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~  379 (557)
                      ..+++..++.+....+...++..++..++..+..+|.++..+|++|....++..|.+-|...++...  .++.+...||+
T Consensus       529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN  608 (1018)
T KOG2002|consen  529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN  608 (1018)
T ss_pred             hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence            9999999998888899999999999999999999999999999999999999999998887776532  35677788898


Q ss_pred             HHHh------------cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705          380 EYVE------------MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ  447 (557)
Q Consensus       380 ~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  447 (557)
                      ++++            .+.+++|+..|.++++.+|.+..+-.++|.++...|++.+|+..|.++.+--.+++.+|.++|.
T Consensus       609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah  688 (1018)
T KOG2002|consen  609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAH  688 (1018)
T ss_pred             HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHH
Confidence            7763            3567899999999999999999999999999999999999999999998877778899999999


Q ss_pred             HHhHHhcCcHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705          448 CYETEQLHMLEEAIKCYRRAANCN--DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH  525 (557)
Q Consensus       448 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  525 (557)
                      ||..  +|+|..|++.|+.+++..  .+++.++..||.++...|.+.+|..++.+++.       ..|.++.+.+++|.+
T Consensus       689 ~~~e--~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~-------~~p~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  689 CYVE--QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH-------LAPSNTSVKFNLALV  759 (1018)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------hCCccchHHhHHHHH
Confidence            9999  999999999999999863  35688999999999999999999999999999       789999999999888


Q ss_pred             HHHc-------------------CCHHHHHHHHHHHhccCCC
Q 008705          526 CRAH-------------------GRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       526 ~~~~-------------------g~~~~A~~~~~~al~~~~~  548 (557)
                      ..+.                   +..+.|.++|..+-...+.
T Consensus       760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7653                   4567777777777665543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3e-29  Score=231.27  Aligned_cols=337  Identities=16%  Similarity=0.118  Sum_probs=213.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      +..+-.+|.-+++.|+|++||++|.++|+.+|+.+..+...                         +.||...|++++.+
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNr-------------------------aAcY~~lgd~~~Vi  169 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNR-------------------------AACYESLGDWEKVI  169 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhH-------------------------HHHHHHHhhHHHHH
Confidence            34567789999999999999999999999999976666555                         88999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHH------------------HHHH--------------hCCCCC
Q 008705          256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFE------------------ELLR--------------NDPYRV  303 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~~l~--------------~~p~~~  303 (557)
                      +...++++++|+...+++.++.++...|++++|+....                  +.++              ..|.-+
T Consensus       170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP  249 (606)
T KOG0547|consen  170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP  249 (606)
T ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Confidence            99999999999999999999999999999888765431                  1111              011111


Q ss_pred             Cc-----------------------------------------------------------------------------H
Q 008705          304 DD-----------------------------------------------------------------------------M  306 (557)
Q Consensus       304 ~~-----------------------------------------------------------------------------~  306 (557)
                      .+                                                                             +
T Consensus       250 S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al  329 (606)
T KOG0547|consen  250 SATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL  329 (606)
T ss_pred             cHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence            00                                                                             0


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC
Q 008705          307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN  386 (557)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  386 (557)
                      ...+...+..|+...+...+..++..+|..+..+..+|-.|....+.++-...|.+|..++|.++++|+..|.+++-+++
T Consensus       330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q  409 (606)
T KOG0547|consen  330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ  409 (606)
T ss_pred             HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence            00111112223333344444444555555555555555555555555555555555555555555555555555555555


Q ss_pred             chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705          387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR  466 (557)
Q Consensus       387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~  466 (557)
                      +++|+..|++++.++|.+.-++..++.+.+++++++++...|+.+++..|+.++++...|.++..  ++++++|++.|.+
T Consensus       410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--qqqFd~A~k~YD~  487 (606)
T KOG0547|consen  410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD--QQQFDKAVKQYDK  487 (606)
T ss_pred             HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--HHhHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555  5555555555555


Q ss_pred             HHhcCCC------hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          467 AANCNDS------EAIALNQLAKLH-HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC  539 (557)
Q Consensus       467 al~~~p~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  539 (557)
                      ++.+.|.      ++..+...|.+. .-.+++.+|+.+++++++       .+|....++..||.+..++|+.++|+++|
T Consensus       488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e-------~Dpkce~A~~tlaq~~lQ~~~i~eAielF  560 (606)
T KOG0547|consen  488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE-------LDPKCEQAYETLAQFELQRGKIDEAIELF  560 (606)
T ss_pred             HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc-------cCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            5555554      222222222221 122455555555555555       78888999999999999999999999999


Q ss_pred             HHHhccC
Q 008705          540 TRLLDYT  546 (557)
Q Consensus       540 ~~al~~~  546 (557)
                      +++..+.
T Consensus       561 Eksa~lA  567 (606)
T KOG0547|consen  561 EKSAQLA  567 (606)
T ss_pred             HHHHHHH
Confidence            9998764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.5e-28  Score=242.80  Aligned_cols=437  Identities=17%  Similarity=0.206  Sum_probs=354.8

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhc--------CCch---hhHHHHHHHHhh----cccchH--HHHH----hhCCCC
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQT--------GRRS---VFLRCYALYLAG----EKRKEE--EMIE----LEGPLG  149 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~--------~~~~---~~l~~~~~~l~~----~~~~~~--~~~~----~~~~~~  149 (557)
                      +.-...|..||..|+.++.+.+|+...        +...   ..+..++.|++-    ++.+.+  +...    +.....
T Consensus        42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~  121 (1018)
T KOG2002|consen   42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD  121 (1018)
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence            445556999999999999999999876        2221   233344444432    111111  1110    000000


Q ss_pred             ------Cch----------hhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHH
Q 008705          150 ------KSN----------AVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAW  213 (557)
Q Consensus       150 ------~~~----------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  213 (557)
                            .+.          .....++.+.+.+....+..|++...++..|.+.+..|+|..|+.+|++++.++|....-.
T Consensus       122 ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~  201 (1018)
T KOG2002|consen  122 KIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV  201 (1018)
T ss_pred             HhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence                  000          0111267888888888899999999999999999999999999999999999998754211


Q ss_pred             HHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---ccHHHHHH
Q 008705          214 SELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL---REFEQVEV  290 (557)
Q Consensus       214 ~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~  290 (557)
                                              ....|.|+.++|+.+.|+..|+++++++|.+..++..+|.+-...   ..+..+..
T Consensus       202 ------------------------rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~  257 (1018)
T KOG2002|consen  202 ------------------------RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ  257 (1018)
T ss_pred             ------------------------cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence                                    123489999999999999999999999999999999998876554   45789999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC---CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC
Q 008705          291 IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK---YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD  367 (557)
Q Consensus       291 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  367 (557)
                      .+.++...+|.++.++..+++.++..+++..+..++..++....   ..++.++.+|..|..+|++++|..+|.++++.+
T Consensus       258 ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~  337 (1018)
T KOG2002|consen  258 LLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD  337 (1018)
T ss_pred             HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999998877653   355679999999999999999999999999999


Q ss_pred             cCC-HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----ChHHHHHHHHHHHhcCCCCHHHH
Q 008705          368 KNY-LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----MPLYALHYFRKSVFLQPNDSRLW  442 (557)
Q Consensus       368 p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~  442 (557)
                      +++ .-.++.+|.+++..|+++.|+.+|++++...|++..+...||.+|...+    ..+.|..+..++++..|.+.++|
T Consensus       338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~  417 (1018)
T KOG2002|consen  338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW  417 (1018)
T ss_pred             CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence            988 7889999999999999999999999999999999999999999999886    66889999999999999999999


Q ss_pred             HHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC---cc
Q 008705          443 IAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG---PN  514 (557)
Q Consensus       443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~  514 (557)
                      ..++.++..   ++.-.++..|.+|+.+     .+--+++++++|..++..|++.+|...|..++..+......+   ..
T Consensus       418 l~laql~e~---~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~  494 (1018)
T KOG2002|consen  418 LELAQLLEQ---TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST  494 (1018)
T ss_pred             HHHHHHHHh---cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence            999999986   5555669999998843     344578999999999999999999999999998633211111   12


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 008705          515 MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLK  555 (557)
Q Consensus       515 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~  555 (557)
                      .....+++|.++...++++.|.+.|..+++.. |...+++.
T Consensus       495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~yl  534 (1018)
T KOG2002|consen  495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYL  534 (1018)
T ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHH
Confidence            34568999999999999999999999999987 44555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=6e-28  Score=256.97  Aligned_cols=356  Identities=11%  Similarity=-0.039  Sum_probs=274.9

Q ss_pred             HHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHH
Q 008705          161 LERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF  240 (557)
Q Consensus       161 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~  240 (557)
                      +.....+.....|..+.++..+|.++...|++++|+..|+++++.+|.+..++..+                        
T Consensus        34 A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l------------------------   89 (765)
T PRK10049         34 VITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL------------------------   89 (765)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------------------
Confidence            33344444445677788888999999999999999999999999999888887766                        


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                       +.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..++++++..|++..++..++.++...+..+
T Consensus        90 -a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         90 -ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             -HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence             55566666666666666666666666666 6666666666666666666666666666666555555555544333322


Q ss_pred             ----------------------------------------------HHHHHHHHHHhhCCCChhHH-------HH-HHHH
Q 008705          321 ----------------------------------------------ALSYLAHRVFMTDKYRPESC-------CI-IGNY  346 (557)
Q Consensus       321 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~-------~~-la~~  346 (557)
                                                                    ++...++.++...|.+|...       .. ++ .
T Consensus       168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~  246 (765)
T PRK10049        168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-A  246 (765)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-H
Confidence                                                          33334444554433333321       11 33 3


Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCH-HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCCh
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYL-SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD----YRAWYGLGQAYEMMHMP  421 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~  421 (557)
                      +...|++++|+..|+++++..+..+ .+...+|.++...|++++|+..|++++..+|.+    ......++.++...|++
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            4577999999999999998864322 244446999999999999999999999988766    35677788889999999


Q ss_pred             HHHHHHHHHHHhcCCC-------------C--HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          422 LYALHYFRKSVFLQPN-------------D--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~-------------~--~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      ++|+..++++....|.             +  ..++..++.++..  .|++++|+..+++++...|.++.++..+|.++.
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~--~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~  404 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY--SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ  404 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999988763             2  3467889999999  999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 008705          487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT  552 (557)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  552 (557)
                      ..|++++|+..+++++.       ..|++..+++.+|.++...|++++|...++++++..|++...
T Consensus       405 ~~g~~~~A~~~l~~al~-------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        405 ARGWPRAAENELKKAEV-------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             hcCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999       789999999999999999999999999999999998776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=8.3e-27  Score=248.00  Aligned_cols=450  Identities=12%  Similarity=-0.026  Sum_probs=291.7

Q ss_pred             cccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCC---C-Cchhh-----
Q 008705           84 EEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPL---G-KSNAV-----  154 (557)
Q Consensus        84 ~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~-~~~~~-----  154 (557)
                      +.+|......+.||+.|+..|++++|+..++++....+....++.. +..- ++...++.....+   . .....     
T Consensus        72 ~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i-~~~~kA~~~ye~l~~~~P~n~~~~~~la  149 (987)
T PRK09782         72 QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAI-PVEVKSVTTVEELLAQQKACDAVPTLRC  149 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHh-ccChhHHHHHHHHHHhCCCChhHHHHHH
Confidence            3456666788899999999999999999999988755543333221 2221 2333332211111   1 00000     


Q ss_pred             ----------chhHHHHHHHHhhhhcCCCC-Chh-HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhc
Q 008705          155 ----------NRELISLERELSTSWKNGTV-DPF-GLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTS  222 (557)
Q Consensus       155 ----------~~~l~~~~~~l~~~~~~~~~-~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  222 (557)
                                ......+...|. .....|. ++. +.+.++.+|.++|++++|+..+++.++..|.+...+..|+.++..
T Consensus       150 ~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q  228 (987)
T PRK09782        150 RSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA  228 (987)
T ss_pred             HHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                      122233344444 2222332 344 555569999999999999999999999999998877766664333


Q ss_pred             H-H----------HH-h--------------------------hc-----CCC--hhHHHH-------------------
Q 008705          223 I-D----------IL-N--------------------------SL-----NLN--NHWMKD-------------------  238 (557)
Q Consensus       223 ~-~----------~~-~--------------------------~l-----~~~--~~~~~~-------------------  238 (557)
                      . +          .+ .                          ++     ..+  ..|...                   
T Consensus       229 ~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~  308 (987)
T PRK09782        229 GQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF  308 (987)
T ss_pred             hhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence            1 0          00 0                          00     000  000000                   


Q ss_pred             --------HHHHHHHHHHh-----------------------------hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008705          239 --------YFLASAYQELR-----------------------------MHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS  281 (557)
Q Consensus       239 --------~~la~~~~~~~-----------------------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  281 (557)
                              .-.+..+...+                             .+.++......+....|.+...+.+++.....
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~  388 (987)
T PRK09782        309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ  388 (987)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                    00011122222                             22222222233333335556666666666666


Q ss_pred             cccHHHHHHHHHHHHHh---------------------------------------------------------------
Q 008705          282 LREFEQVEVIFEELLRN---------------------------------------------------------------  298 (557)
Q Consensus       282 ~g~~~~A~~~~~~~l~~---------------------------------------------------------------  298 (557)
                      .|++++|...|+++...                                                               
T Consensus       389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  468 (987)
T PRK09782        389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL  468 (987)
T ss_pred             cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence            66666666666555543                                                               


Q ss_pred             --CCC--CCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHH
Q 008705          299 --DPY--RVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW  374 (557)
Q Consensus       299 --~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  374 (557)
                        .|.  +..++..++.++.. +...++...+.+++...|... ....+|..+...|++++|+..|++++...|. ...+
T Consensus       469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~  545 (987)
T PRK09782        469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDL  545 (987)
T ss_pred             ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHH
Confidence              222  22333334444433 344445555555555555432 2444555556677777777777776655444 3456


Q ss_pred             HHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc
Q 008705          375 TLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       375 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  454 (557)
                      ..+|.++...|++++|+.+|++++..+|.+...+..++......|++++|+..|+++++.+|+ +..+..+|.++.+  .
T Consensus       546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~--l  622 (987)
T PRK09782        546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ--R  622 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--C
Confidence            677777888888888888888888888877777776666666779999999999999999996 8889999999999  9


Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705          455 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE  534 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  534 (557)
                      |++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++       ..|+++.+++++|.++...|++++
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-------l~P~~~~a~~nLA~al~~lGd~~e  695 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK-------GLPDDPALIRQLAYVNQRLDDMAA  695 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999999999999999999999999998       689999999999999999999999


Q ss_pred             HHHHHHHHhccCCCc
Q 008705          535 AEVYCTRLLDYTGPV  549 (557)
Q Consensus       535 A~~~~~~al~~~~~~  549 (557)
                      |..+|+++++++|..
T Consensus       696 A~~~l~~Al~l~P~~  710 (987)
T PRK09782        696 TQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999988654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=4.9e-27  Score=249.74  Aligned_cols=442  Identities=14%  Similarity=0.069  Sum_probs=346.4

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcC------CchhhHHHHHHHHh----------------------------hcc
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTG------RRSVFLRCYALYLA----------------------------GEK  135 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~------~~~~~l~~~~~~l~----------------------------~~~  135 (557)
                      ......++..|...|++++|...+++...      .....+...+++-.                            .++
T Consensus       247 ~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (987)
T PRK09782        247 PQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKE  326 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhc
Confidence            35666789999999999999999887532      11222222211111                            123


Q ss_pred             cchHHHHHhhCCCCCch---------hhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccC
Q 008705          136 RKEEEMIELEGPLGKSN---------AVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSY  206 (557)
Q Consensus       136 ~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~  206 (557)
                      +..+.+.++........         ...+...++..++..+.+..|.++..+...+....+.|++++|...|+++....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~  406 (987)
T PRK09782        327 GQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ  406 (987)
T ss_pred             cHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC
Confidence            33333333322111111         112344555666666777779999999999999999999999999999999863


Q ss_pred             CCC---HHHHHHHHHhhhcHHHHhhcCCChhHHHHHHH------HHHHHHHhhhH---HHHHHHHHHHhcCCC--CHHHH
Q 008705          207 PWN---WNAWSELKSLCTSIDILNSLNLNNHWMKDYFL------ASAYQELRMHK---ESLTKYEYLQGTFSF--SNYIQ  272 (557)
Q Consensus       207 p~~---~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~l------a~~~~~~~~~~---~A~~~~~~~l~~~p~--~~~~~  272 (557)
                      ++-   ......++.++.+...+..   +...   ..+      ..-..-.|+..   .+...+.+++...|.  ++.++
T Consensus       407 ~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~  480 (987)
T PRK09782        407 GDARLSQTLMARLASLLESHPYLAT---PAKV---AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW  480 (987)
T ss_pred             cccccCHHHHHHHHHHHHhCCcccc---hHHH---HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence            322   2233366666554322110   0000   000      00122244443   455666666777788  99999


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705          273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ  352 (557)
Q Consensus       273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  352 (557)
                      ..+|.++.. ++..+|+..+.+++...|... ....++.++...++++++...++++....|. ...+..+|.++...|+
T Consensus       481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd  557 (987)
T PRK09782        481 NRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGN  557 (987)
T ss_pred             HHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCC
Confidence            999999987 899999999999999999753 3445566677899999999999998776555 4567889999999999


Q ss_pred             hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705          353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV  432 (557)
Q Consensus       353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  432 (557)
                      +++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..|++++
T Consensus       558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL  636 (987)
T PRK09782        558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL  636 (987)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999888887777777889999999999999999996 9999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705          433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG  512 (557)
Q Consensus       433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (557)
                      .++|+++.++.++|.++..  .|++++|+..|+++++..|+++.+++++|.++...|++++|+.+|+++++       ..
T Consensus       637 ~l~Pd~~~a~~nLG~aL~~--~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-------l~  707 (987)
T PRK09782        637 ELEPNNSNYQAALGYALWD--SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID-------DI  707 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cC
Confidence            9999999999999999999  99999999999999999999999999999999999999999999999999       78


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      |+.+.+....|.+.....+++.|.+.+.+...++|...
T Consensus       708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            99999999999999999999999999999999986543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.4e-27  Score=217.82  Aligned_cols=389  Identities=12%  Similarity=0.028  Sum_probs=303.8

Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhhcC--Cc-hhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705           94 YLLAKSYFDCREYRRAAHVLRDQTG--RR-SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK  170 (557)
Q Consensus        94 ~~la~~~~~~~~y~~A~~~l~~~~~--~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  170 (557)
                      -..|+-+|..|+|++|+++|..+++  ++ +.|....+.....- +.++                    ...+...+.+.
T Consensus       119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l-gd~~--------------------~Vied~TkALE  177 (606)
T KOG0547|consen  119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESL-GDWE--------------------KVIEDCTKALE  177 (606)
T ss_pred             HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH-hhHH--------------------HHHHHHHHHhh
Confidence            3459999999999999999999876  33 56665544433221 1222                    23333555666


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh-ccCCCCHHHHHHHHHhhhcHH------HHhh----cCCChhHHHHH
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESV-NSYPWNWNAWSELKSLCTSID------ILNS----LNLNNHWMKDY  239 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~l~~~~~~~~------~~~~----l~~~~~~~~~~  239 (557)
                      .+|+-.-+++.++..+...|++++|+.-..-.. -.+-.|.+....+-+......      .+..    +.+...++..|
T Consensus       178 l~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy  257 (606)
T KOG0547|consen  178 LNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY  257 (606)
T ss_pred             cCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence            789999999999999999999999987654332 111122222222222211111      1110    00001111111


Q ss_pred             H-----------------------HHHHHHHHh---hhHHHHHHHHHHHhcC---C-CC---------HHHHHHHHHHHH
Q 008705          240 F-----------------------LASAYQELR---MHKESLTKYEYLQGTF---S-FS---------NYIQAQIAKAQY  280 (557)
Q Consensus       240 ~-----------------------la~~~~~~~---~~~~A~~~~~~~l~~~---p-~~---------~~~~~~la~~~~  280 (557)
                      +                       -+.-.+..+   .|.+|...+.+.....   + .+         ..++...|..++
T Consensus       258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f  337 (606)
T KOG0547|consen  258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF  337 (606)
T ss_pred             HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence            1                       111222223   4666666665543321   1 12         566788888899


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHH
Q 008705          281 SLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF  360 (557)
Q Consensus       281 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  360 (557)
                      -.|+.-.|...|+.++.++|.+...+..++.++...++..+....+..+..++|.++.+|+..|.+++..+++++|+.-|
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---
Q 008705          361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN---  437 (557)
Q Consensus       361 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---  437 (557)
                      ++++.++|.+..++..++...++.+++++++..|+.+....|+.++.+...|.++..+++|+.|++.|.+++.+.|.   
T Consensus       418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~  497 (606)
T KOG0547|consen  418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL  497 (606)
T ss_pred             HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             ---CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          438 ---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       438 ---~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                         ++..+...|.+..+ +.+++..|+.++.+|++++|....++..||.+..++|+.++|+++|++++..
T Consensus       498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence               66677777766665 4799999999999999999999999999999999999999999999999984

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.9e-26  Score=208.98  Aligned_cols=362  Identities=16%  Similarity=0.210  Sum_probs=306.2

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhh
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSW  169 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~  169 (557)
                      +.-.|+.|.++-+.|.-..|+..|..++..-|.|..++......-.  ..+..                       ..+.
T Consensus       164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit--~~e~~-----------------------~~l~  218 (559)
T KOG1155|consen  164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT--DIEIL-----------------------SILV  218 (559)
T ss_pred             hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc--hHHHH-----------------------HHHH
Confidence            4667788999999999999999999998877777666433222110  01111                       1111


Q ss_pred             cCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHhcc-CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHH
Q 008705          170 KNGT--VDPFGLYLYGIVLKDKGNENLARTVFVESVNS-YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQ  246 (557)
Q Consensus       170 ~~~~--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~  246 (557)
                      ...|  .+...-+-++.++....+.++++.-++..+.. .|.+.-.-.                         ..|.+..
T Consensus       219 ~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~-------------------------~~A~~~y  273 (559)
T KOG1155|consen  219 VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKT-------------------------QIAAASY  273 (559)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHH-------------------------HHHHHHh
Confidence            1123  44455667788888888889998888888776 565543222                         2488888


Q ss_pred             HHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          247 ELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       247 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      ...++++|+..|+.+.+.+|-..+-.-....+++-..+-.+---+-+.+..++..+++.....++.+...++.+++...+
T Consensus       274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF  353 (559)
T KOG1155|consen  274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF  353 (559)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence            99999999999999999999877767777777777776666666677788899999999999999999999999999999


Q ss_pred             HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR  406 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  406 (557)
                      +++++.+|....+|..+|.-|..+.+...|+..|++|++++|.+..+|+.+|+.|.-++...=|+-+|++|+...|+|.+
T Consensus       354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR  433 (559)
T KOG1155|consen  354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR  433 (559)
T ss_pred             HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh-------cCCChHHHHH
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-------CNDSEAIALN  479 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~  479 (557)
                      .|..||.+|.++++.++|+++|.+++.....+..++..+|.+|.+  +++.++|..+|++.++       ..|....+..
T Consensus       434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~--l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~  511 (559)
T KOG1155|consen  434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE--LKDLNEAAQYYEKYVEVSELEGEIDDETIKARL  511 (559)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            999999999999999999999999999998889999999999999  9999999999999998       4555667788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          480 QLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      .||.-+.+.+++++|..+..+++.
T Consensus       512 fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  512 FLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHhc
Confidence            899999999999999999998887

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.2e-27  Score=229.95  Aligned_cols=300  Identities=17%  Similarity=0.182  Sum_probs=272.2

Q ss_pred             hHHHHHHHHHHh--cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          177 FGLYLYGIVLKD--KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       177 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      .++..+|..+..  +-+..+|+..|++.-...++..  |..                       ..+|..|+++++|++|
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~--wvl-----------------------~q~GrayFEl~~Y~~a  372 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG--WVL-----------------------SQLGRAYFELIEYDQA  372 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch--HHH-----------------------HHHHHHHHHHHHHHHH
Confidence            355556655544  4566899999999444444433  322                       2459999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC
Q 008705          255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK  334 (557)
Q Consensus       255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (557)
                      ..+|+.+-...|-..+-.-....++++..+--+--.+.+.++..+|+.++.|..+++++..+++.+.+...++++++++|
T Consensus       373 ~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp  452 (638)
T KOG1126|consen  373 ERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP  452 (638)
T ss_pred             HHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence            99999999999987776777778888888777666777888899999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      ....++..+|.-+....++++|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.+
T Consensus       453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~  532 (638)
T KOG1126|consen  453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRI  532 (638)
T ss_pred             ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      +.+.|+.++|+.+|++|+.++|.++-..+..|.++..  ++++++|+..+++.-++.|++..+++.+|.+|.+.|+.+.|
T Consensus       533 ~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~--~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  533 QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS--LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh--hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 008705          495 AFYYKKDLE  503 (557)
Q Consensus       495 ~~~~~~al~  503 (557)
                      +..|.-|..
T Consensus       611 l~~f~~A~~  619 (638)
T KOG1126|consen  611 LLHFSWALD  619 (638)
T ss_pred             HHhhHHHhc
Confidence            999999998

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.96  E-value=9.1e-26  Score=240.33  Aligned_cols=320  Identities=12%  Similarity=0.031  Sum_probs=233.9

Q ss_pred             HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHH
Q 008705          165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASA  244 (557)
Q Consensus       165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~  244 (557)
                      ++++.+..|.++. ++.+|.++...|++++|+..|+++++..|.+..++..+                         +.+
T Consensus       106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l-------------------------a~~  159 (765)
T PRK10049        106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY-------------------------VQA  159 (765)
T ss_pred             HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHH
Confidence            4444444455555 55555555555555555555555555555554444333                         555


Q ss_pred             HHHHhhhHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHH-----hcccH---HHHHHHHHHHHHhCCCCCCcHHH--H
Q 008705          245 YQELRMHKESLTKYEYLQGTFSFSN-----YIQAQIAKAQY-----SLREF---EQVEVIFEELLRNDPYRVDDMDM--Y  309 (557)
Q Consensus       245 ~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~~~~~~--~  309 (557)
                      +...+..++|+..++++.. .|+..     .....+.....     ..+++   ++|+..++.+++..|.+++....  .
T Consensus       160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~  238 (765)
T PRK10049        160 LRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR  238 (765)
T ss_pred             HHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence            5555555556655555443 33210     01111111111     11223   66777788888765555444221  1


Q ss_pred             -----HHHHHhccchhHHHHHHHHHHhhCCCChh-HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC----HHHHHHHhH
Q 008705          310 -----SNVLYAKECFSALSYLAHRVFMTDKYRPE-SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTLMGH  379 (557)
Q Consensus       310 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~  379 (557)
                           ...+...++.+++...++.++...+..|. +...+|.+|...|++++|+.+|++++..+|.+    ......++.
T Consensus       239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~  318 (765)
T PRK10049        239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY  318 (765)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence                 22346778899999999998887654332 44457999999999999999999999988766    356777888


Q ss_pred             HHHhcCCchHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705          380 EYVEMKNTPAAIDAYRRAVDINPRD---------------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA  444 (557)
Q Consensus       380 ~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  444 (557)
                      ++.+.|++++|+..++++....|..               ..++..+|.++...|++++|+..+++++...|.++.++..
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~  398 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID  398 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            8999999999999999999987732               3567889999999999999999999999999999999999


Q ss_pred             HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705          445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI  520 (557)
Q Consensus       445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (557)
                      +|.++..  .|++++|++.+++++.++|++..+++.+|.++...|++++|...++++++       ..|+++.+..
T Consensus       399 lA~l~~~--~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~-------~~Pd~~~~~~  465 (765)
T PRK10049        399 YASVLQA--RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA-------REPQDPGVQR  465 (765)
T ss_pred             HHHHHHh--cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCCCHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999       6888886544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=6.5e-26  Score=225.69  Aligned_cols=303  Identities=16%  Similarity=0.167  Sum_probs=255.5

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      .......|..|..+...|++++|+..|+++++.+|.++.++..+                         |.++...|+++
T Consensus        32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~g~~~   86 (389)
T PRK11788         32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLAL-------------------------GNLFRRRGEVD   86 (389)
T ss_pred             hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHH-------------------------HHHHHHcCcHH
Confidence            45566788889999999999999999999999999998877666                         99999999999


Q ss_pred             HHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHH
Q 008705          253 ESLTKYEYLQGTFSFS----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHR  328 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (557)
                      +|+..+++++...+..    ..++..+|.++...|++++|+..|+++++..|.                           
T Consensus        87 ~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~---------------------------  139 (389)
T PRK11788         87 RAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF---------------------------  139 (389)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc---------------------------
Confidence            9999999998754332    356788999999999999999999999987664                           


Q ss_pred             HHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705          329 VFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR  403 (557)
Q Consensus       329 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  403 (557)
                             +..++..++.++...|++++|+..++++++..|...     ..+..+|.++...|++++|+..|+++++.+|+
T Consensus       140 -------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  212 (389)
T PRK11788        140 -------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ  212 (389)
T ss_pred             -------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC
Confidence                   345667788888999999999999999988877653     24567888899999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705          404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA  482 (557)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  482 (557)
                      +..++..+|.++...|++++|+..+++++...|.+ ..++..++.++..  .|++++|+..+++++...|+...+ ..++
T Consensus       213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~g~~~~A~~~l~~~~~~~p~~~~~-~~la  289 (389)
T PRK11788        213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA--LGDEAEGLEFLRRALEEYPGADLL-LALA  289 (389)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCchHH-HHHH
Confidence            99999999999999999999999999999888776 4567888999999  999999999999999998876544 8899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q 008705          483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA--HGRFEEAEVYCTRLLD  544 (557)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  544 (557)
                      .++...|++++|+..++++++       ..|++......++.....  .|+..+|+..+++.++
T Consensus       290 ~~~~~~g~~~~A~~~l~~~l~-------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        290 QLLEEQEGPEAAQALLREQLR-------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHH-------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            999999999999999999998       578877655555444422  4588888888877764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2e-25  Score=204.30  Aligned_cols=428  Identities=15%  Similarity=0.135  Sum_probs=318.2

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHhhhcCC----chhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705           92 DFYLLAKSYFDCREYRRAAHVLRDQTGR----RSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST  167 (557)
Q Consensus        92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  167 (557)
                      ..+.||.-|-....+.+|+..++-+...    +.-.+..                    .++......+++..+.+...-
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm--------------------nigni~~kkr~fskaikfyrm  262 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM--------------------NIGNIHFKKREFSKAIKFYRM  262 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee--------------------eecceeeehhhHHHHHHHHHH
Confidence            4567899999999999999888865441    1111110                    011111112222233332222


Q ss_pred             hhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH----------Hhhc---
Q 008705          168 SWKNGT-----VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI----------LNSL---  229 (557)
Q Consensus       168 ~~~~~~-----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~----------~~~l---  229 (557)
                      .+...|     -...++..+|..+.+.|+|+.|+..|+..++..|+...++. |.-|.-.++.          +-.+   
T Consensus       263 aldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n-l~i~~f~i~d~ekmkeaf~kli~ip~~  341 (840)
T KOG2003|consen  263 ALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN-LIICAFAIGDAEKMKEAFQKLIDIPGE  341 (840)
T ss_pred             HHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh-hhhhheecCcHHHHHHHHHHHhcCCCC
Confidence            222222     12356788899999999999999999999999998766553 3222221111          1111   


Q ss_pred             ----------CCChh-HHHHHHHHHHHHH--Hh---hhHHHHHHHHHHHh--cCCCC--------------------HHH
Q 008705          230 ----------NLNNH-WMKDYFLASAYQE--LR---MHKESLTKYEYLQG--TFSFS--------------------NYI  271 (557)
Q Consensus       230 ----------~~~~~-~~~~~~la~~~~~--~~---~~~~A~~~~~~~l~--~~p~~--------------------~~~  271 (557)
                                ..|.. ....-.....+..  ..   +-++++..--+++.  +.|+.                    .++
T Consensus       342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl  421 (840)
T KOG2003|consen  342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL  421 (840)
T ss_pred             CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence                      11111 1111111222211  11   22333333333322  12221                    122


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHh--ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705          272 QAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD-DMDMYSNVLYA--KECFSALSYLAHRVFMTDKYRPESCCIIGNYYS  348 (557)
Q Consensus       272 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  348 (557)
                      -...+..+.+.|+++.|+++++-.-+.+..... +...+..+.+.  -.++..+..++..++..+..++.+....|++-+
T Consensus       422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f  501 (840)
T KOG2003|consen  422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF  501 (840)
T ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence            345566788999999999998776655543322 22344444444  347888999999999999999999999999999


Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF  428 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  428 (557)
                      ..|++++|.+.|+.++.-+..+.++++++|..+..+|+.++|+++|-+...+--++.++++.++.+|..+.+..+|++++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888889999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705          429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE  508 (557)
Q Consensus       429 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (557)
                      -++..+-|++|.++..+|.+|-+  .|+-.+|.+|+-......|.+.+...+||..|....-+++|+.+|+++.-     
T Consensus       582 ~q~~slip~dp~ilskl~dlydq--egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-----  654 (840)
T KOG2003|consen  582 MQANSLIPNDPAILSKLADLYDQ--EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-----  654 (840)
T ss_pred             HHhcccCCCCHHHHHHHHHHhhc--ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----
Confidence            99999999999999999999999  99999999999999999999999999999999999999999999999887     


Q ss_pred             hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          509 EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       509 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                        ..|+.......++.|+.+.|+|++|.+.|+..-...|.+
T Consensus       655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003|consen  655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence              789999999999999999999999999999998887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.95  E-value=6.1e-23  Score=214.29  Aligned_cols=406  Identities=10%  Similarity=-0.058  Sum_probs=296.0

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh---HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF---LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST  167 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  167 (557)
                      ...|.-|...++.|+|+.|+..|++++...|..   +.-++.++. ..++                    .+.+...+++
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~--------------------~~~A~~~~ek   93 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGR--------------------DQEVIDVYER   93 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCC--------------------cHHHHHHHHH
Confidence            688999999999999999999999998755543   222222222 2122                    3344455666


Q ss_pred             hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705          168 SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE  247 (557)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~  247 (557)
                      .....+.....+..+|.++...|++++|++.|+++++.+|++..++..+                         +..+..
T Consensus        94 a~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL-------------------------a~~y~~  148 (822)
T PRK14574         94 YQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM-------------------------IMTQAD  148 (822)
T ss_pred             hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------------------------HHHHhh
Confidence            6644455555566668899999999999999999999999999888766                         555555


Q ss_pred             HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh-------
Q 008705          248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS-------  320 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-------  320 (557)
                      .++.++|++.++++...+|..... ..++.++...++..+|+..++++++.+|.+.+.+..+..++...+-..       
T Consensus       149 ~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        149 AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            566666666666665555553332 333444434445544666666666666655555444444333322111       


Q ss_pred             -----------------------------------------HHHHHHHHHHhhCCCChh-------HHHHHHHHHhhhCc
Q 008705          321 -----------------------------------------ALSYLAHRVFMTDKYRPE-------SCCIIGNYYSLKGQ  352 (557)
Q Consensus       321 -----------------------------------------~~~~~~~~~~~~~~~~~~-------~~~~la~~~~~~g~  352 (557)
                                                               .+......++...+..|+       +..-.-.++...|+
T Consensus       228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r  307 (822)
T PRK14574        228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ  307 (822)
T ss_pred             hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence                                                     122222333332233232       12233345667899


Q ss_pred             hHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhCChHHHH
Q 008705          353 HEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP------RDYRAWYGLGQAYEMMHMPLYAL  425 (557)
Q Consensus       353 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~  425 (557)
                      +.+++..|+...... |--..+....|..|+..+++++|+.+|++++.-.|      .+......|..+|...+++++|.
T Consensus       308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~  387 (822)
T PRK14574        308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY  387 (822)
T ss_pred             HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence            999999999876544 22345777889999999999999999999988653      23333577888999999999999


Q ss_pred             HHHHHHHhcCC---------------CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705          426 HYFRKSVFLQP---------------NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR  490 (557)
Q Consensus       426 ~~~~~a~~~~p---------------~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  490 (557)
                      .++++..+..|               +.......++.++..  .|++.+|.+.+++.+...|.++.++..+|.++...|+
T Consensus       388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~--~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA--LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL  465 (822)
T ss_pred             HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            99999987544               224567778999999  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 008705          491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT  552 (557)
Q Consensus       491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  552 (557)
                      +.+|...++.+..       ..|.+..+...+|.++..+|++.+|.....++++..|++...
T Consensus       466 p~~A~~~~k~a~~-------l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        466 PRKAEQELKAVES-------LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             HHHHHHHHHHHhh-------hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            9999999988888       799999999999999999999999999999999999887654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.8e-24  Score=200.91  Aligned_cols=366  Identities=17%  Similarity=0.138  Sum_probs=247.9

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh-----
Q 008705           92 DFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS-----  166 (557)
Q Consensus        92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-----  166 (557)
                      -.|+-|++|...+++++|...|+.++.....-....-.+.....-...+..++...++-+.....+.......++     
T Consensus       143 ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k  222 (611)
T KOG1173|consen  143 ICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCK  222 (611)
T ss_pred             eeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhh
Confidence            345559999999999999999998876444333332233333222222222222222111111111111111111     


Q ss_pred             ------------hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705          167 ------------TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH  234 (557)
Q Consensus       167 ------------~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~  234 (557)
                                  .-......++.+..-.+..++..+++.+..+.++..++.+|.+..++.-.                  
T Consensus       223 ~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~------------------  284 (611)
T KOG1173|consen  223 NRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH------------------  284 (611)
T ss_pred             hccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH------------------
Confidence                        00011245678888899999999999999999999999999988766432                  


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705          235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY  314 (557)
Q Consensus       235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  314 (557)
                            +| ++.+.|+..+-..+-.++++.+|+.+..|+..|..|+..|++.+|..+|.++..++|....          
T Consensus       285 ------ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp----------  347 (611)
T KOG1173|consen  285 ------IA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP----------  347 (611)
T ss_pred             ------HH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH----------
Confidence                  34 8888898888888888899999999999999999999999999999999999999887654          


Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY  394 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  394 (557)
                                              +|...|..+...|++++|+.+|.+|-++-|........+|.-|...++++-|.++|
T Consensus       348 ------------------------aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  348 ------------------------AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             ------------------------HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence                                    55556666666677777777777777777766666666777777777777777777


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ----P---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      .+|+.+.|.++-....+|.+.+..+.|.+|..+|+.++..-    +   .....+.++|.++.+  ++++++|+.+|+++
T Consensus       404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk--l~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK--LNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH--HhhHHHHHHHHHHH
Confidence            77777777777777777777777777777777777666321    1   123356677777777  77777777777777


Q ss_pred             HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705          468 ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH  525 (557)
Q Consensus       468 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  525 (557)
                      +.+.|.++.++..+|.+|..+|+++.|+++|.+++-       ..|++..+--.|+.+
T Consensus       482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~-------l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA-------LKPDNIFISELLKLA  532 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCccHHHHHHHHHH
Confidence            777777777777777777777777777777777776       566665444444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1e-24  Score=217.02  Aligned_cols=274  Identities=16%  Similarity=0.122  Sum_probs=244.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705          237 KDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK  316 (557)
Q Consensus       237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  316 (557)
                      ..|+.|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. .            
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~------------  103 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT-R------------  103 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-H------------
Confidence            345678899999999999999999999999999999999999999999999999999988743211 0            


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                                       .....++..+|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++
T Consensus       104 -----------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  166 (389)
T PRK11788        104 -----------------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAER  166 (389)
T ss_pred             -----------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence                             002346778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCh-----HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          397 AVDINPRDY-----RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       397 al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      ++...|.+.     ..+..+|.++...|++++|+.+|+++++..|++..++..+|.++..  .|++++|++.+++++..+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHC
Confidence            999888653     3567899999999999999999999999999999999999999999  999999999999999988


Q ss_pred             CCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          472 DSE-AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       472 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      |.+ ..++..++.+|...|++++|...++++++       ..|+... ...++.++.+.|++++|...++++++..|++.
T Consensus       245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-------~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~  316 (389)
T PRK11788        245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-------EYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLR  316 (389)
T ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence            876 46788999999999999999999999998       5676544 48899999999999999999999999986653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.94  E-value=3.3e-24  Score=189.66  Aligned_cols=325  Identities=16%  Similarity=0.110  Sum_probs=225.2

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705          172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH  251 (557)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~  251 (557)
                      +|.+..-++.+|..++..|++..|+..|-.+++.+|++..+++..                         |.+|+.+|+.
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrR-------------------------aT~yLAmGks   88 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRR-------------------------ATVYLAMGKS   88 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHH-------------------------HHHHhhhcCC
Confidence            456778899999999999999999999999999999998887665                         9999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705          252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM  331 (557)
Q Consensus       252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (557)
                      .-|+.-+.+++++.|+...+..+.|.++..+|++++|...|+.+++.+|.+.........+....+.             
T Consensus        89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~-------------  155 (504)
T KOG0624|consen   89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH-------------  155 (504)
T ss_pred             ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------------
Confidence            9999999999999999999999999999999999999999999999999776554443332211100             


Q ss_pred             hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                            .........++..|++..|+.+..+.+++.|-+...+...+.+|...|++..||..++.+-++..++.+.++.+
T Consensus       156 ------~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki  229 (504)
T KOG0624|consen  156 ------WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI  229 (504)
T ss_pred             ------HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence                  11112233344456666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHhHHhcCcHHHHHHHHHHHHhcCCChHH---
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM------------AQCYETEQLHMLEEAIKCYRRAANCNDSEAI---  476 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---  476 (557)
                      +.+++..|+.+.++...+.+++++|+.-.++-.+            +.....  .++|.+++...++.++.+|..+.   
T Consensus       230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie--~~~~t~cle~ge~vlk~ep~~~~ir~  307 (504)
T KOG0624|consen  230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE--EKHWTECLEAGEKVLKNEPEETMIRY  307 (504)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhcCCcccceee
Confidence            6666666666666666666666666654332111            112223  45666666666666666665433   


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          477 -ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       477 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                       ....+..|+...|++.+|+....+++.       .+|+++.++...|..|.....|+.|+.-|+++.+.++++
T Consensus       308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~-------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  308 NGFRVLCTCYREDEQFGEAIQQCKEVLD-------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             eeeheeeecccccCCHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence             333455566666666666666666666       566666666666666666666666666666666666443

>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8)

Probab=99.94  E-value=9.9e-27  Score=188.67  Aligned_cols=137  Identities=49%  Similarity=0.722  Sum_probs=105.1

Q ss_pred             ChHHHHHHHHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCCC
Q 008705            3 SKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPV   82 (557)
Q Consensus         3 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (557)
                      +++++|.+||+++++|++|||++||||+||+|+||++.+...++.....                  .+.+.....+.+.
T Consensus         5 ~~~~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~   66 (142)
T PF04049_consen    5 DLKEIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSS------------------SPSSSQLSPSSPS   66 (142)
T ss_pred             hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCccccccccccc------------------CCCccccCCCChh
Confidence            6899999999999999999999999999999999997765322111100                  0000000011111


Q ss_pred             ccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchh
Q 008705           83 MEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRE  157 (557)
Q Consensus        83 ~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (557)
                      .+..+..+.+.|++|++||+++||+||+++|+++.++...|+++|+.||+|+|++.++..++.+........|++
T Consensus        67 ~~~~~~~e~d~yllAksyFD~kEy~RaA~~L~~~~s~~~~FL~lYs~YLa~EKr~~Ee~~~~~~~~~~~~~~n~~  141 (142)
T PF04049_consen   67 EDQLESKEYDKYLLAKSYFDCKEYDRAAHVLKDCKSPKALFLRLYSRYLAGEKRKEEEMEESLGPGDSGQSVNKE  141 (142)
T ss_pred             hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHhhhhHhhcCccccchhhhcc
Confidence            222234678999999999999999999999999999999999999999999999999999988777755555543

This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.8e-21  Score=176.58  Aligned_cols=480  Identities=14%  Similarity=0.073  Sum_probs=355.1

Q ss_pred             HHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccC-----CCcc----cccc---ccC----CCCCCCCCCC
Q 008705           11 LRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQR-----GSSS----IRRR---FRT----NDITSTPVAG   74 (557)
Q Consensus        11 l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~---~~~----~~~~~~~~~~   74 (557)
                      +...++++...||+.....++.++.++..+++...+.+...+-     .+-.    +++-   +..    +.....|..+
T Consensus         3 ~ia~~~~~~~~~l~e~v~~~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~   82 (564)
T KOG1174|consen    3 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNA   82 (564)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhcccccc
Confidence            5567899999999999999999999998776532222220000     0000    0000   000    0000001000


Q ss_pred             CcCCCCCCccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCC--chhhHHHHH-HHHhhcccchHHHHHhhCCCCCc
Q 008705           75 VSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGR--RSVFLRCYA-LYLAGEKRKEEEMIELEGPLGKS  151 (557)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~--~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~  151 (557)
                      . .++.+.....+.+++.++..+.||...++-+.|+..+..+.+.  .+...-..+ .+-.|...+ ++.......+.+-
T Consensus        83 ~-~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~-~~vl~ykevvrec  160 (564)
T KOG1174|consen   83 V-LVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHK-EAVLAYKEVIREC  160 (564)
T ss_pred             c-cccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhcccccc-HHHHhhhHHHHhc
Confidence            0 0011111222335688999999999999999999999987652  222211111 112221111 2222111100000


Q ss_pred             hhhchhHHHHHHHHh-------------hhhcCCCCChhHHH-HHHHHHHhcCChH--HHHHHHHHHhccCCCCHHHHHH
Q 008705          152 NAVNRELISLERELS-------------TSWKNGTVDPFGLY-LYGIVLKDKGNEN--LARTVFVESVNSYPWNWNAWSE  215 (557)
Q Consensus       152 ~~~~~~l~~~~~~l~-------------~~~~~~~~~~~~~~-~~g~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~  215 (557)
                      .   -.++.+.-.++             ......|.+++.+. .++......++..  .+..++-.-....|+|..-...
T Consensus       161 p---~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~  237 (564)
T KOG1174|consen  161 P---MALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMA  237 (564)
T ss_pred             c---hHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHH
Confidence            0   00111111111             11223455565543 3344444455544  4455566666778888876655


Q ss_pred             HHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 008705          216 LKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEEL  295 (557)
Q Consensus       216 l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  295 (557)
                      +                         |.++...|++.+|+..|+++..++|......-..|..+...|++++-..+...+
T Consensus       238 l-------------------------ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L  292 (564)
T KOG1174|consen  238 L-------------------------GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL  292 (564)
T ss_pred             H-------------------------hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence            5                         999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHH
Q 008705          296 LRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT  375 (557)
Q Consensus       296 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  375 (557)
                      +..+.....-|..-+..++..+++..+..+..+++..+|.+.+.+...|+.+...|++++|+-.|+.|..+.|...+.|.
T Consensus       293 f~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~  372 (564)
T KOG1174|consen  293 FAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYR  372 (564)
T ss_pred             HhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHH
Confidence            99998888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH-HHH-HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG-QAY-EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ  453 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  453 (557)
                      .+.++|+..|.+.+|.-.-+.++...|.++.++..+| .++ ..-..-++|.+++++++.++|....+...++.++..  
T Consensus       373 GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~--  450 (564)
T KOG1174|consen  373 GLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV--  450 (564)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999999999887 333 344456889999999999999999999999999999  


Q ss_pred             cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705          454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG  530 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  530 (557)
                      .|.+++++..+++.+...|+ ...+..||.++...+.+.+|..+|..++.       .+|.+..+...+-.......
T Consensus       451 Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-------~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  451 EGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR-------QDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             hCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCccchHHHHHHHHHHhccC
Confidence            99999999999999998876 46788999999999999999999999999       79998888777766655443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.1e-22  Score=189.33  Aligned_cols=202  Identities=20%  Similarity=0.169  Sum_probs=176.3

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-------hHHHHHHH
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-------YRAWYGLG  412 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~  412 (557)
                      ...+|+..+...++..|+++|.+++.++ .+..-+.+.+.+|++.|.+.+.+.....+++.....       ..+...+|
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g  305 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG  305 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence            3568999999999999999999999999 888889999999999999999999998888765433       33344577


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCC--------------------------CHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPN--------------------------DSRLWIAMAQCYETEQLHMLEEAIKCYRR  466 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~--------------------------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~  466 (557)
                      ..|...++++.|+.+|++++.....                          -..--..-|..++.  .|+|..|+..|.+
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk--~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK--KGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh--ccCHHHHHHHHHH
Confidence            7888899999999999998864322                          12223445788888  9999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ++..+|+++..|.+.|.||.++|.+..|+...+++++       .+|+...+|+.-|.++..+.+|++|.+.|+++++.+
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE-------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999       799999999999999999999999999999999999


Q ss_pred             CCchh
Q 008705          547 GPVSF  551 (557)
Q Consensus       547 ~~~~~  551 (557)
                      |.+.+
T Consensus       457 p~~~e  461 (539)
T KOG0548|consen  457 PSNAE  461 (539)
T ss_pred             chhHH
Confidence            76543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.5e-21  Score=183.62  Aligned_cols=411  Identities=16%  Similarity=0.130  Sum_probs=279.8

Q ss_pred             HHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCC
Q 008705           96 LAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVD  175 (557)
Q Consensus        96 la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~  175 (557)
                      -|+..|..|+|+.|+..|.+.+...|..--+|+--.+.                  ......+..+.+.-.+..+.+|.-
T Consensus         8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa------------------~a~~~~~~~al~da~k~~~l~p~w   69 (539)
T KOG0548|consen    8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAA------------------YASLGSYEKALKDATKTRRLNPDW   69 (539)
T ss_pred             HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHH------------------HHHHhhHHHHHHHHHHHHhcCCch
Confidence            38889999999999999999876443321122111110                  011233445555555566678999


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh-cCCChhHHHH-------HHH-----H
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS-LNLNNHWMKD-------YFL-----A  242 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~-l~~~~~~~~~-------~~l-----a  242 (557)
                      +..|..+|..+.-.|+|++|+..|.+.++.+|+|......|...........+ ...|.-|+..       ..+     -
T Consensus        70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~  149 (539)
T KOG0548|consen   70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV  149 (539)
T ss_pred             hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence            99999999999999999999999999999999999988888876521110000 0011111000       000     0


Q ss_pred             HH-------------HHHHhhhHHHHHHHHHH---------Hh-----cCC---------C---C---------HHHHHH
Q 008705          243 SA-------------YQELRMHKESLTKYEYL---------QG-----TFS---------F---S---------NYIQAQ  274 (557)
Q Consensus       243 ~~-------------~~~~~~~~~A~~~~~~~---------l~-----~~p---------~---~---------~~~~~~  274 (557)
                      ..             |..-.+...|.-.+..+         ..     ..|         .   .         ..-...
T Consensus       150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~  229 (539)
T KOG0548|consen  150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE  229 (539)
T ss_pred             HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence            00             00000001111111000         00     011         0   0         123467


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCC-------hhHHHHHHHHH
Q 008705          275 IAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR-------PESCCIIGNYY  347 (557)
Q Consensus       275 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~la~~~  347 (557)
                      +|...+...++..|++.|..++.++ .+...+...+.+++..+.+......+..+++.....       ......+|..|
T Consensus       230 lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~  308 (539)
T KOG0548|consen  230 LGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY  308 (539)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence            8888888999999999999999998 777777788888888887777766666655444322       22334467788


Q ss_pred             hhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHH
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY  427 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  427 (557)
                      ...++++.|+.+|++++.....        ..+.-..+..++++.......-++|.-..--..-|..++..|+|..|+..
T Consensus       309 ~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~  380 (539)
T KOG0548|consen  309 TKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH  380 (539)
T ss_pred             hhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence            8899999999999998876544        45555666677777777777777777766666778888888888888888


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705          428 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA  507 (557)
Q Consensus       428 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (557)
                      |.+++..+|+++..|.+.|.||..  +|.+..|+...+++++++|+...+|..-|.++..+.+|++|.+.|+++++    
T Consensus       381 YteAIkr~P~Da~lYsNRAac~~k--L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale----  454 (539)
T KOG0548|consen  381 YTEAIKRDPEDARLYSNRAACYLK--LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE----  454 (539)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            888888888888888888888888  88888888888888888888888888888888888888888888888888    


Q ss_pred             hhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       508 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                         .+|.+.++.-.+.+|...+.......+..+++
T Consensus       455 ---~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~  486 (539)
T KOG0548|consen  455 ---LDPSNAEAIDGYRRCVEAQRGDETPEETKRRA  486 (539)
T ss_pred             ---cCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence               67888888888888877654444444555553

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.92  E-value=2.2e-20  Score=178.72  Aligned_cols=390  Identities=14%  Similarity=0.115  Sum_probs=327.6

Q ss_pred             HHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccC-----CCCHHHHHHHHHhhhcHHH-------Hh-
Q 008705          161 LERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSY-----PWNWNAWSELKSLCTSIDI-------LN-  227 (557)
Q Consensus       161 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~l~~~~~~~~~-------~~-  227 (557)
                      +..-|.++.+.-|.++.+|..-+..-..+|+.+.-.++..+.+..-     --+-+.|..-+..+...+.       +. 
T Consensus       425 AkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~a  504 (913)
T KOG0495|consen  425 AKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRA  504 (913)
T ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHH
Confidence            3344555666678888888888888888888877777777766422     1234455544433221111       00 


Q ss_pred             --hc--CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705          228 --SL--NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV  303 (557)
Q Consensus       228 --~l--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  303 (557)
                        .+  ...+.......-+..+...+.++-|..+|..+++.+|....+|...+..-...|..+.-..++++++..-|...
T Consensus       505 vigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae  584 (913)
T KOG0495|consen  505 VIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE  584 (913)
T ss_pred             HHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch
Confidence              01  11111122223478888889999999999999999999999999999999999999999999999999999998


Q ss_pred             CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705          304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE  383 (557)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  383 (557)
                      ..|..++...+..|+...+..++..++..+|++-++|+....+.....+++.|..+|.++....|. ..+|+.-+.....
T Consensus       585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~  663 (913)
T KOG0495|consen  585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERY  663 (913)
T ss_pred             hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999987665 6789999999999


Q ss_pred             cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~  463 (557)
                      +++.++|+++++++++..|+....|..+|+++..+++.+.|...|...++..|..+..|..++.+-..  .|+.-.|...
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk--~~~~~rAR~i  741 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK--DGQLVRARSI  741 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH--hcchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc-----------------------CCcchHHHHH
Q 008705          464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER-----------------------EGPNMVEALI  520 (557)
Q Consensus       464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------~~~~~~~~~~  520 (557)
                      ++++.-.+|.+...|......-.+.|+.++|...+.++++.++..+.                       ....++.++.
T Consensus       742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVll  821 (913)
T KOG0495|consen  742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLL  821 (913)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHH
Confidence            99999999999999999999999999999999999999986543211                       1234678889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705          521 FLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHL  554 (557)
Q Consensus       521 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~  554 (557)
                      ..|..+....++++|.++|.++++.+|+ ..+++
T Consensus       822 aia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~w  854 (913)
T KOG0495|consen  822 AIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAW  854 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHH
Confidence            9999999999999999999999999854 33443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.92  E-value=1.4e-21  Score=194.02  Aligned_cols=336  Identities=16%  Similarity=0.146  Sum_probs=276.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHH
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLT  256 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~  256 (557)
                      ..++..|..++..|++++|..++.++|+++|.+..+|..|                         |.+|...|+.++++.
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL-------------------------~~IyEqrGd~eK~l~  194 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTL-------------------------GEIYEQRGDIEKALN  194 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHH-------------------------HHHHHHcccHHHHHH
Confidence            4556667778888999999999999999999999999777                         999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCC
Q 008705          257 KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR  336 (557)
Q Consensus       257 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (557)
                      ..-.+-.++|.+.+.|..++....++|++.+|.-+|.++++.+|.+.......+.++...|+...+.....+++...|..
T Consensus       195 ~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~  274 (895)
T KOG2076|consen  195 FWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV  274 (895)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence            99999899999999999999999999999999999999999999998888889999999999999999999999888832


Q ss_pred             hh-----HHHHHHHHHhhhCchHHHHHHHHHHHhcC--cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--CCC----
Q 008705          337 PE-----SCCIIGNYYSLKGQHEKSVVYFRRALKLD--KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--NPR----  403 (557)
Q Consensus       337 ~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~----  403 (557)
                      ..     .-...+.++...++.+.|++.++.++...  ....+.+..++.+++...+++.|+.........  .++    
T Consensus       275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~  354 (895)
T KOG2076|consen  275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW  354 (895)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence            21     22345777888888899999999998832  334455778889999999999998887766551  011    


Q ss_pred             ----------------------ChHH-HHHHHHHHHHhCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhHHhcCcHHH
Q 008705          404 ----------------------DYRA-WYGLGQAYEMMHMPLYALHYFRKSVFLQP-NDSRLWIAMAQCYETEQLHMLEE  459 (557)
Q Consensus       404 ----------------------~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~  459 (557)
                                            +..+ ...++.+....+...+++..+..--...| +++..+..++.++..  .|++.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~--~~~~~~  432 (895)
T KOG2076|consen  355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN--IGKYKE  432 (895)
T ss_pred             hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh--cccHHH
Confidence                                  1223 45555556666666667666654333334 347789999999999  999999


Q ss_pred             HHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 008705          460 AIKCYRRAANCNDS-EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY  538 (557)
Q Consensus       460 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  538 (557)
                      |+.+|..+....+. +..+|+.+|.||..+|.+++|+++|++++.       ..|++.++...|+.++.++|++++|.+.
T Consensus       433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEt  505 (895)
T KOG2076|consen  433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALET  505 (895)
T ss_pred             HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence            99999999887653 366999999999999999999999999999       7999999999999999999999999999


Q ss_pred             HHHHhccC
Q 008705          539 CTRLLDYT  546 (557)
Q Consensus       539 ~~~al~~~  546 (557)
                      +++...-+
T Consensus       506 L~~~~~~D  513 (895)
T KOG2076|consen  506 LEQIINPD  513 (895)
T ss_pred             HhcccCCC
Confidence            99877433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.92  E-value=8.4e-21  Score=198.41  Aligned_cols=370  Identities=12%  Similarity=-0.059  Sum_probs=281.4

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhc-------HHHHhhcCCC--hhHHHHHHH
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTS-------IDILNSLNLN--NHWMKDYFL  241 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-------~~~~~~l~~~--~~~~~~~~l  241 (557)
                      ..|..+...|..+.+..+.|+++.|+..|+++++.+|.+..+...++.+...       ...++....+  ........+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            4578888999999999999999999999999999999986443344433322       2222222222  233333344


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhH
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSA  321 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  321 (557)
                      |.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+..++++...+|..... ..++.++...++..+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~  187 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence            7799999999999999999999999999999999999999999999999999999999985443 445555555566666


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHH------------------------------------------
Q 008705          322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVY------------------------------------------  359 (557)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~------------------------------------------  359 (557)
                      +...+++++..+|.+.+++..+.......|-...|.+.                                          
T Consensus       188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~  267 (822)
T PRK14574        188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA  267 (822)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            89999999999999999887776666555544443333                                          


Q ss_pred             ------HHHHHhcC---cCC----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCChHHHH
Q 008705          360 ------FRRALKLD---KNY----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-PRDYRAWYGLGQAYEMMHMPLYAL  425 (557)
Q Consensus       360 ------~~~al~~~---p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~  425 (557)
                            ++..+...   |..    ..+..-.-.++...|++.+++..|+...... |--.-+....|..|..++++++|+
T Consensus       268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~  347 (822)
T PRK14574        268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA  347 (822)
T ss_pred             HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence                  33333322   221    1222334445667888999999998776544 223446667899999999999999


Q ss_pred             HHHHHHHhcCC------CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC---------------ChHHHHHHHHHH
Q 008705          426 HYFRKSVFLQP------NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND---------------SEAIALNQLAKL  484 (557)
Q Consensus       426 ~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~  484 (557)
                      .+|++++.-.|      .+......|..++..  .+++++|..++++.....|               +...+...++.+
T Consensus       348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld--~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~  425 (822)
T PRK14574        348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNE--SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS  425 (822)
T ss_pred             HHHHHHhhccccccCCCcchHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence            99999987653      223334677788888  9999999999999988444               335678889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          485 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      +...|++.+|.+.+++.+.       ..|.++.++..+|.++...|.+.+|...++.+..++|.+.
T Consensus       426 ~~~~gdl~~Ae~~le~l~~-------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~  484 (822)
T PRK14574        426 LVALNDLPTAQKKLEDLSS-------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL  484 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence            9999999999999999998       7999999999999999999999999999999999876653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.92  E-value=6.6e-21  Score=182.20  Aligned_cols=362  Identities=12%  Similarity=0.047  Sum_probs=298.2

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhc---------CCChhHHHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSL---------NLNNHWMKDYFLAS  243 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l---------~~~~~~~~~~~la~  243 (557)
                      .+.-..|..-+..+.+.+-++-|+.+|..+++.+|.....|...+.+-...+..+++         ..|.......+.+.
T Consensus       513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ak  592 (913)
T KOG0495|consen  513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAK  592 (913)
T ss_pred             chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence            344567888888999999999999999999999999999999887765544433332         23444444445577


Q ss_pred             HHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705          244 AYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS  323 (557)
Q Consensus       244 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  323 (557)
                      .+...|+...|..++.++++.+|++.++|+..-.+.....+++.|..+|.++....|. ...+...+++...++..+++.
T Consensus       593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~  671 (913)
T KOG0495|consen  593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEAL  671 (913)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence            7777888888888888888888888888888888888888888888888888887664 356667777788888888888


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705          324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR  403 (557)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  403 (557)
                      .+++.+++..|..+..|..+|.++..+++.+.|...|...++..|.++..|..++.+--..|+.-.|...++++.-.+|+
T Consensus       672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk  751 (913)
T KOG0495|consen  672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK  751 (913)
T ss_pred             HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008705          404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK  483 (557)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  483 (557)
                      +...|.....+-.+.|..+.|.....+|++..|++...|..-....-.  -++-..++..+++    ...++.++...|.
T Consensus       752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~--~~rkTks~DALkk----ce~dphVllaia~  825 (913)
T KOG0495|consen  752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR--PQRKTKSIDALKK----CEHDPHVLLAIAK  825 (913)
T ss_pred             cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC--cccchHHHHHHHh----ccCCchhHHHHHH
Confidence            888888888888888888888888888888888888877766666555  5554555544443    4677889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      +++...++++|.++|.++++       .+|++.++|.++-..+...|.-++-.+.+.++..-.|.
T Consensus       826 lfw~e~k~~kar~Wf~Ravk-------~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~  883 (913)
T KOG0495|consen  826 LFWSEKKIEKAREWFERAVK-------KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT  883 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-------cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence            99999999999999999999       79999999999999999999999999999999987764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=4.6e-22  Score=175.06  Aligned_cols=235  Identities=16%  Similarity=0.187  Sum_probs=210.8

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705          273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ  352 (557)
Q Consensus       273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  352 (557)
                      .++|.||+..|-+.+|.+.++..++..|                                   .++++..++.+|....+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-----------------------------------~~dTfllLskvY~ridQ  271 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-----------------------------------HPDTFLLLSKVYQRIDQ  271 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-----------------------------------chhHHHHHHHHHHHhcc
Confidence            5566666666666666666666666555                                   57889999999999999


Q ss_pred             hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705          353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV  432 (557)
Q Consensus       353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  432 (557)
                      +..|+..|...++..|.+......++.++..++++++|.++|+.+++.+|.+.++.-.+|..|+.-++++-|+.+|++.+
T Consensus       272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL  351 (478)
T KOG1129|consen  272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL  351 (478)
T ss_pred             HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 008705          433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE  509 (557)
Q Consensus       433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (557)
                      ++.-.+++.+.++|.|++.  .++++-++.+|++++....+   -.++|+++|.+....|++.-|..+|+-++.      
T Consensus       352 qmG~~speLf~NigLCC~y--aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~------  423 (478)
T KOG1129|consen  352 QMGAQSPELFCNIGLCCLY--AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT------  423 (478)
T ss_pred             HhcCCChHHHhhHHHHHHh--hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc------
Confidence            9999999999999999999  99999999999999987442   367999999999999999999999999998      


Q ss_pred             cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          510 REGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       510 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                       .++++.+++.+||.+-.+.|+.++|..++..+-...|.-.+
T Consensus       424 -~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  424 -SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE  464 (478)
T ss_pred             -cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence             89999999999999999999999999999999998865443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.91  E-value=4.7e-21  Score=190.27  Aligned_cols=363  Identities=16%  Similarity=0.149  Sum_probs=290.5

Q ss_pred             hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705          154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN  233 (557)
Q Consensus       154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~  233 (557)
                      +.+++..+..-+..+.+.+|.++.+|+.+|.+|.++|+.+++...+-.|-.++|.+++-|..+                 
T Consensus       151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l-----------------  213 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL-----------------  213 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----------------
Confidence            456788888889999999999999999999999999999999999999999999999999877                 


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-----CcHHH
Q 008705          234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV-----DDMDM  308 (557)
Q Consensus       234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~  308 (557)
                              +....++|++.+|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|...     +....
T Consensus       214 --------adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~  285 (895)
T KOG2076|consen  214 --------ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR  285 (895)
T ss_pred             --------HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence                    88899999999999999999999999999999999999999999999999999999999211     11223


Q ss_pred             HHHHHHhccchhHHHHHHHHHHh--hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc--CcC---------------
Q 008705          309 YSNVLYAKECFSALSYLAHRVFM--TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--DKN---------------  369 (557)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~---------------  369 (557)
                      .+..+...++.+.+...+...+.  .+...-+.+..++.++....+++.|..........  .++               
T Consensus       286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~  365 (895)
T KOG2076|consen  286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN  365 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence            34455566666777777777766  34445667788999999999999999887765541  010               


Q ss_pred             -----------CHHH-HHHHhHHHHhcCCchHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          370 -----------YLSA-WTLMGHEYVEMKNTPAAIDAYRRAVDINP-RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       370 -----------~~~~-~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                                 +..+ ...++.+.++.++..+++..+..--...| ++...++.++.++...|++.+|+.+|..+....+
T Consensus       366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~  445 (895)
T KOG2076|consen  366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG  445 (895)
T ss_pred             ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence                       1123 45556666666666666666544333334 3578899999999999999999999999988765


Q ss_pred             C-CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhhhcCCc
Q 008705          437 N-DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM--EAEEREGP  513 (557)
Q Consensus       437 ~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  513 (557)
                      . +..+|..+|.||..  +|.+++|+.+|++++...|.+.++...|+.++.++|++++|.+.++....--  .......+
T Consensus       446 ~~~~~vw~~~a~c~~~--l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~  523 (895)
T KOG2076|consen  446 YQNAFVWYKLARCYME--LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE  523 (895)
T ss_pred             ccchhhhHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence            3 36799999999999  9999999999999999999999999999999999999999999888754200  00001223


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          514 NMVEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       514 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      ....+......++...|+.++=+......+
T Consensus       524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  524 PERRILAHRCDILFQVGKREEFINTASTLV  553 (895)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            456677888999999999988555444433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.91  E-value=5.3e-24  Score=200.80  Aligned_cols=261  Identities=20%  Similarity=0.212  Sum_probs=79.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhcc--CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705          180 YLYGIVLKDKGNENLARTVFVESVNS--YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK  257 (557)
Q Consensus       180 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~  257 (557)
                      +.+|.++...|++++|++++++.+..  .|.+...|..+                         |.+....+++++|+..
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~-------------------------a~La~~~~~~~~A~~a   66 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLL-------------------------ADLAWSLGDYDEAIEA   66 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-------------------------cccccccccccccccc
Confidence            46699999999999999999765544  37777766555                         8888889999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCCh
Q 008705          258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRP  337 (557)
Q Consensus       258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (557)
                      |++++...+.++..+..++.+ ...+++++|+.++++..+..++ +.                                 
T Consensus        67 y~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~---------------------------------  111 (280)
T PF13429_consen   67 YEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PR---------------------------------  111 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccc-cc---------------------------------
Confidence            999999888888888788777 7889999999998888776542 23                                 


Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcC--cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLD--KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY  415 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  415 (557)
                       .+.....++...++++++...++++....  +.++..|..+|.++.+.|++++|+..|+++++.+|++..++..++.++
T Consensus       112 -~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l  190 (280)
T PF13429_consen  112 -YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL  190 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence             33334444555566666666666554433  445555666666666666666666666666666666666666666666


Q ss_pred             HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705          416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA  495 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  495 (557)
                      ...|+++++...+....+..|.++..|..+|.++..  +|++++|+.+|++++..+|+++.++..+|.++...|+.++|.
T Consensus       191 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~--lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  191 IDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ--LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH--HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred             HHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc--cccccccccccccccccccccccccccccccccccccccccc
Confidence            666666665555555555555555566666666666  666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHH
Q 008705          496 FYYKKDLE  503 (557)
Q Consensus       496 ~~~~~al~  503 (557)
                      .++++++.
T Consensus       269 ~~~~~~~~  276 (280)
T PF13429_consen  269 RLRRQALR  276 (280)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            66655554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.91  E-value=6.9e-24  Score=200.04  Aligned_cols=261  Identities=21%  Similarity=0.209  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705          240 FLASAYQELRMHKESLTKYEYLQG-T-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE  317 (557)
Q Consensus       240 ~la~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  317 (557)
                      -+|.++...|++++|++++.+.+. . .|+++..|..+|.+....++++.|+..|++++..++.                
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----------------   76 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----------------   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence            346677777777777777755443 3 3666667777777777777777777777777666554                


Q ss_pred             chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705          318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                                        ++..+..++.+ ...+++++|+.+++++.+..+ ++..+.....++...++++++...++++
T Consensus        77 ------------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~  136 (280)
T PF13429_consen   77 ------------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKL  136 (280)
T ss_dssp             -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred             ------------------ccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence                              44555556666 688999999999999987664 4667778888999999999999999998


Q ss_pred             HhhC--CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          398 VDIN--PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       398 l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      ....  +.++..|..+|.++...|++++|+..|+++++.+|+++.++..++.++..  .|+++++...+.......|.++
T Consensus       137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~--~~~~~~~~~~l~~~~~~~~~~~  214 (280)
T PF13429_consen  137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID--MGDYDEAREALKRLLKAAPDDP  214 (280)
T ss_dssp             HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH-HTSC
T ss_pred             HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHCcCHH
Confidence            7655  67889999999999999999999999999999999999999999999999  9999999999998888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          476 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      ..+..+|.++..+|++++|+.+|+++++       ..|.++.++..+|.++...|+.++|..++++++..
T Consensus       215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~-------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  215 DLWDALAAAYLQLGRYEEALEYLEKALK-------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             CHCHHHHHHHHHHT-HHHHHHHHHHHHH-------HSTT-HHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHhcccccccccccccccccc-------ccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999       68999999999999999999999999999998764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.90  E-value=3.6e-21  Score=176.51  Aligned_cols=284  Identities=15%  Similarity=0.121  Sum_probs=258.6

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFS-NYIQAQIAKAQYS--LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA  315 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  315 (557)
                      ...+..+++.|+++.|++++.-.-+.+... ..+-..+..+++.  -.++.+|..+-..++..+..++.++...+++.+.
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~  502 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA  502 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence            456888999999999999988765554432 2233445555555  3478999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHH
Q 008705          316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYR  395 (557)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  395 (557)
                      .|+++++...++.++..+....++++.+|..+...|+.++|+.+|-+.-.+-.++.++++.++.+|..+.+..+|++++.
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888888899999999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          396 RAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       396 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      ++..+-|+++.++..||.+|-+.|+-.+|..++-...+..|.+.+..-.+|..|..  ..-+++|+.+|+++--+.|+..
T Consensus       583 q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid--tqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  583 QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID--TQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcCccHH
Confidence            99999999999999999999999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705          476 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  531 (557)
                      .....++.|+.+.|+|.+|...|+..-.       ..|++.+++..|.++.-.+|-
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hr-------kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHR-------KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHH-------hCccchHHHHHHHHHhccccc
Confidence            9999999999999999999999999888       689999999999998877773

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.90  E-value=4.3e-20  Score=180.54  Aligned_cols=375  Identities=13%  Similarity=0.060  Sum_probs=308.1

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH-------Hhh-c---CCChhHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI-------LNS-L---NLNNHWMKDYFL  241 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~-------~~~-l---~~~~~~~~~~~l  241 (557)
                      .+++.++-.+...+...|++..+.+.|++++...-...+.|..++..+...+.       +.. +   +.+++.....+.
T Consensus       320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            47899999999999999999999999999999888888899988877654332       111 1   123334433333


Q ss_pred             -HHHHHHHhhhHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHhCCCCCC
Q 008705          242 -ASAYQELRMHKESLTKYEYLQGTFS-----FSNYIQAQIAKAQYSL-----------REFEQVEVIFEELLRNDPYRVD  304 (557)
Q Consensus       242 -a~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~  304 (557)
                       ..|....+.+++++.+..+++....     -.+..+..+|.+|-.+           ....++++.++++++.+|.++.
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence             4456778899999999999988421     1355677777777543           2357889999999999999999


Q ss_pred             cHHHHHHHHHhccchhHHHHHHHHHHhh-CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705          305 DMDMYSNVLYAKECFSALSYLAHRVFMT-DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE  383 (557)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  383 (557)
                      +.+.++.-+...++...+...+++++.. ..+++..|..++.++...+++..|+...+-++...|++........++-..
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~  559 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT  559 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence            9999999999999999999999999999 677899999999999999999999999999999888865554444444444


Q ss_pred             cCCchHHHHHHHHHHhhC--------------------------------------------------------C-----
Q 008705          384 MKNTPAAIDAYRRAVDIN--------------------------------------------------------P-----  402 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~--------------------------------------------------------p-----  402 (557)
                      .++.++|+..+...+.+.                                                        |     
T Consensus       560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~  639 (799)
T KOG4162|consen  560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL  639 (799)
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence            555555544443333220                                                        1     


Q ss_pred             ---CC-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          403 ---RD-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       403 ---~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                         +.     ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++..  .|+.++|...|..++.++|++
T Consensus       640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~--~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV--KGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH--HHhhHHHHHHHHHHHhcCCCC
Confidence               00     34577888999999999999999999999999999999999999999  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 008705          475 AIALNQLAKLHHALGRDEEAAF--YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT  552 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  552 (557)
                      +.+...+|.++.+.|+..-|..  .+..+++       .+|.++++|+.+|.++.+.|+.++|.++|.-++++.+.+.+.
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr-------~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~  790 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALR-------LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL  790 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence            9999999999999999888888  9999999       799999999999999999999999999999999998877766


Q ss_pred             hhhc
Q 008705          553 HLKN  556 (557)
Q Consensus       553 a~~~  556 (557)
                      .+.+
T Consensus       791 pFs~  794 (799)
T KOG4162|consen  791 PFSN  794 (799)
T ss_pred             cccc
Confidence            5554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.90  E-value=8.9e-19  Score=188.33  Aligned_cols=395  Identities=7%  Similarity=-0.047  Sum_probs=241.1

Q ss_pred             HHHHHhhhhhhHHHHHHHHhhhcCCchh--hHHHHHHHH--hhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705           95 LLAKSYFDCREYRRAAHVLRDQTGRRSV--FLRCYALYL--AGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK  170 (557)
Q Consensus        95 ~la~~~~~~~~y~~A~~~l~~~~~~~~~--~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  170 (557)
                      .+=..+.+.|++++|..+|+........  -.-.+..++  ....+..+++..+                    ++... 
T Consensus       375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~l--------------------f~~M~-  433 (1060)
T PLN03218        375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF--------------------AKLIR-  433 (1060)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHH--------------------HHHcC-
Confidence            3345566889999999999987553211  011111111  1122233333332                    22222 


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC-CHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW-NWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR  249 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~  249 (557)
                        ..+...+..+-..+.+.|++++|..+|.++.+.... +...|..+                         ...|.+.|
T Consensus       434 --~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL-------------------------I~~y~k~G  486 (1060)
T PLN03218        434 --NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL-------------------------ISTCAKSG  486 (1060)
T ss_pred             --CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------HHHHHhCc
Confidence              145666777777778888888888888887765432 33334333                         55666677


Q ss_pred             hhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-CCCCcHHHHHHHHHhccchhHHHHHHH
Q 008705          250 MHKESLTKYEYLQGTFS-FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP-YRVDDMDMYSNVLYAKECFSALSYLAH  327 (557)
Q Consensus       250 ~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (557)
                      +.++|.++|+++.+... .+...|..+...|.+.|++++|+..|+.+....- .+...+..+...+...++.+++..++.
T Consensus       487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~  566 (1060)
T PLN03218        487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA  566 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            77777777777665432 2556666667777777777777777776655321 123345555566666677777766666


Q ss_pred             HHHhh---CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--C
Q 008705          328 RVFMT---DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--N  401 (557)
Q Consensus       328 ~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~  401 (557)
                      .+...   -..+..++..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+.|++++|+..|+++...  .
T Consensus       567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~  646 (1060)
T PLN03218        567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK  646 (1060)
T ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence            66542   12234566666667777777777777777776654 345566777777777777777777777776654  3


Q ss_pred             CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHH
Q 008705          402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALN  479 (557)
Q Consensus       402 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  479 (557)
                      | +...|..+...|.+.|++++|..+++++.+.. +.+...+..+...|.+  .|++++|.++|++..... ..+...|.
T Consensus       647 P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k--~G~~eeA~~lf~eM~~~g~~PdvvtyN  723 (1060)
T PLN03218        647 P-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN--AKNWKKALELYEDIKSIKLRPTVSTMN  723 (1060)
T ss_pred             C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            3 35566667777777777777777777766643 3345667777777777  777777777777665431 12345666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          480 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      .+...|.+.|++++|.++|+++...     +..| +...+..+...+.+.|++++|..++.++.+..
T Consensus       724 ~LI~gy~k~G~~eeAlelf~eM~~~-----Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        724 ALITALCEGNQLPKALEVLSEMKRL-----GLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            7777777777777777777766541     1223 34455556666777777777777777776654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.90  E-value=3.4e-22  Score=189.45  Aligned_cols=255  Identities=18%  Similarity=0.234  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705          178 GLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK  257 (557)
Q Consensus       178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~  257 (557)
                      -=|..|..+++.|+..+|+-+|+.+++.+|.+.++|..|                         |.+....++-..|+..
T Consensus       287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~L-------------------------G~~qaENE~E~~ai~A  341 (579)
T KOG1125|consen  287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKL-------------------------GITQAENENEQNAISA  341 (579)
T ss_pred             ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHh-------------------------hhHhhhccchHHHHHH
Confidence            357899999999999999999999999999999999887                         9999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH-------HHHhccchhHHHHHHHHHH
Q 008705          258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN-------VLYAKECFSALSYLAHRVF  330 (557)
Q Consensus       258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  330 (557)
                      ++++++++|++..++..+|..|...|.-.+|..++.+.+...|........--+       -.........+..++-.+.
T Consensus       342 L~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa  421 (579)
T KOG1125|consen  342 LRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA  421 (579)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988753211000000       0000011223333444444


Q ss_pred             hhCC--CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH
Q 008705          331 MTDK--YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW  408 (557)
Q Consensus       331 ~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  408 (557)
                      ...|  .+|++...||.+|...|+|++|+.+|+.||..+|++...|..+|-.+....+.++|+..|++|+++.|...+++
T Consensus       422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R  501 (579)
T KOG1125|consen  422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR  501 (579)
T ss_pred             HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee
Confidence            4455  56777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHhHHhcCcHHH
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPND----------SRLWIAMAQCYETEQLHMLEE  459 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----------~~~~~~l~~~~~~~~~~~~~~  459 (557)
                      ++||.++..+|.|.+|..+|-.++.+.+..          ..+|..|-.++..  +++.+-
T Consensus       502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~--~~~~D~  560 (579)
T KOG1125|consen  502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA--MNRSDL  560 (579)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH--cCCchH
Confidence            777777777777777777777777665431          1355555555555  555553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.90  E-value=8.3e-20  Score=194.27  Aligned_cols=433  Identities=12%  Similarity=0.056  Sum_probs=322.1

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhhcCCc--hhhHHHHHHHHhh--cccchHHHHHhhC-----CCCCch----------h
Q 008705           93 FYLLAKSYFDCREYRRAAHVLRDQTGRR--SVFLRCYALYLAG--EKRKEEEMIELEG-----PLGKSN----------A  153 (557)
Q Consensus        93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~--~~~l~~~~~~l~~--~~~~~~~~~~~~~-----~~~~~~----------~  153 (557)
                      ...+...+...|.+++|..+|+......  ..-...|...+..  ..+..+.+..+..     .+....          .
T Consensus        90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~  169 (697)
T PLN03081         90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV  169 (697)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence            3445677888999999999999775321  0001111111111  1122222222111     111110          1


Q ss_pred             hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC-CHHHHHHHHHhhhcHHHH------
Q 008705          154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW-NWNAWSELKSLCTSIDIL------  226 (557)
Q Consensus       154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~~~------  226 (557)
                      ..+.++.+.+.+....   ..|...|..+...+.+.|++++|+..|+++.+..+. +...+..+...+...+.+      
T Consensus       170 k~g~~~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l  246 (697)
T PLN03081        170 KCGMLIDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL  246 (697)
T ss_pred             cCCCHHHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence            2344566666665543   357788999999999999999999999999875432 223343333332221111      


Q ss_pred             ----hhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-C
Q 008705          227 ----NSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP-Y  301 (557)
Q Consensus       227 ----~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~  301 (557)
                          .......+......+...|.+.|+.++|.+.|+++.   +.+...|..+...|.+.|++++|+.+|+++.+..- .
T Consensus       247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence                111222333344456889999999999999999874   45778899999999999999999999999977432 2


Q ss_pred             CCCcHHHHHHHHHhccchhHHHHHHHHHHhhC-CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHH
Q 008705          302 RVDDMDMYSNVLYAKECFSALSYLAHRVFMTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHE  380 (557)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  380 (557)
                      +...+..+...+...+..+.+..+...+.+.. +.+..++..+...|.+.|++++|...|++..+   .+..+|..+...
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~  400 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAG  400 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHH
Confidence            33456667777888899999999888887765 56778899999999999999999999998754   356789999999


Q ss_pred             HHhcCCchHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhHHhcCc
Q 008705          381 YVEMKNTPAAIDAYRRAVDI--NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--NDSRLWIAMAQCYETEQLHM  456 (557)
Q Consensus       381 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~  456 (557)
                      |...|+.++|++.|++....  .| +..++..+...+...|..++|..+|+.+.+..+  .+...|..+..++.+  .|+
T Consensus       401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r--~G~  477 (697)
T PLN03081        401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR--EGL  477 (697)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh--cCC
Confidence            99999999999999998874  44 577788899999999999999999999986432  234678899999999  999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705          457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE  536 (557)
Q Consensus       457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  536 (557)
                      +++|.+.+++.- ..| +..+|..+...+...|+.+.|...+++.++       ..|++...|..++.+|.+.|++++|.
T Consensus       478 ~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-------~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        478 LDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG-------MGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-------CCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            999999998752 333 456799999999999999999999999887       78888889999999999999999999


Q ss_pred             HHHHHHhccC
Q 008705          537 VYCTRLLDYT  546 (557)
Q Consensus       537 ~~~~~al~~~  546 (557)
                      +.++.+.+..
T Consensus       549 ~v~~~m~~~g  558 (697)
T PLN03081        549 KVVETLKRKG  558 (697)
T ss_pred             HHHHHHHHcC
Confidence            9999987653

>TIGR00540 hemY_coli hemY protein

Probab=99.90  E-value=4.8e-20  Score=182.73  Aligned_cols=298  Identities=11%  Similarity=0.003  Sum_probs=205.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008705          180 YLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYE  259 (557)
Q Consensus       180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  259 (557)
                      ...|......|+++.|.+.+.++.+..|.....+.                         ..|.+....|+++.|...+.
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~l-------------------------laA~aa~~~g~~~~A~~~l~  142 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLI-------------------------KAAEAAQQRGDEARANQHLE  142 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHH-------------------------HHHHHHHHCCCHHHHHHHHH
Confidence            44555555566666666666555555554332221                         22555555566666666666


Q ss_pred             HHHhcCCCCH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705          260 YLQGTFSFSN-YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE  338 (557)
Q Consensus       260 ~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (557)
                      ++.+..|++. .+....+.++...|++++|...++++++..|+++.++..++.++...++++++..++....+....++.
T Consensus       143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~  222 (409)
T TIGR00540       143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE  222 (409)
T ss_pred             HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            6555555543 344444555566666666666666666666666555555566666666666555555555544333333


Q ss_pred             HHH----HHHHHHhhhCchHHHHHHHHHHHhcCc----CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH--
Q 008705          339 SCC----IIGNYYSLKGQHEKSVVYFRRALKLDK----NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW--  408 (557)
Q Consensus       339 ~~~----~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--  408 (557)
                      ...    .........+..+++...+.++....|    +++..+..++..+...|++++|++.++++++..|++....  
T Consensus       223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~  302 (409)
T TIGR00540       223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP  302 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence            221    122222344455556677888887777    5889999999999999999999999999999999887532  


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhHHhcCcHHHHHHHHH--HHHhcCCChHHHHHHHHHH
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYR--RAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~  484 (557)
                      ..........++.+.++..++++++..|+++  .....+|.++..  .|++++|.++|+  ++++..|+... +..+|.+
T Consensus       303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~--~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~l  379 (409)
T TIGR00540       303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK--HGEFIEAADAFKNVAACKEQLDAND-LAMAADA  379 (409)
T ss_pred             HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH--cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHH
Confidence            2233334446888999999999999999999  888999999999  999999999999  57778887665 5599999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHH
Q 008705          485 HHALGRDEEAAFYYKKDLERM  505 (557)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~~~  505 (557)
                      +.+.|+.++|..++++++...
T Consensus       380 l~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       380 FDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHHcCCHHHHHHHHHHHHHHH
Confidence            999999999999999998743

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.90  E-value=9.9e-21  Score=194.55  Aligned_cols=265  Identities=13%  Similarity=-0.013  Sum_probs=220.7

Q ss_pred             ChhHHHHHHHHHHhc---CChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH----
Q 008705          175 DPFGLYLYGIVLKDK---GNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE----  247 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~----  247 (557)
                      ++..+|+.|......   +.+++|+..|+++++.+|.+..+|..+                         |.++..    
T Consensus       257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~L-------------------------a~~~~~~~~~  311 (553)
T PRK12370        257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCAL-------------------------AECYLSMAQM  311 (553)
T ss_pred             HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHH-------------------------HHHHHHHHHc
Confidence            455688888766544   457899999999999999999988777                         444332    


Q ss_pred             -----HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705          248 -----LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL  322 (557)
Q Consensus       248 -----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  322 (557)
                           .+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|+                     
T Consensus       312 g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---------------------  370 (553)
T PRK12370        312 GIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---------------------  370 (553)
T ss_pred             CCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------------
Confidence                 345789999999999999999999999999999999999999999999998887                     


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC-
Q 008705          323 SYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-  401 (557)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-  401 (557)
                                   ++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... 
T Consensus       371 -------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~  437 (553)
T PRK12370        371 -------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL  437 (553)
T ss_pred             -------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence                         466778899999999999999999999999999988777777777888999999999999998875 


Q ss_pred             CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705          402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       402 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      |+++.++..+|.++..+|++++|...+.+.....|.+...+..++..|..  .|  ++|...+++.++.....+.-....
T Consensus       438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g--~~a~~~l~~ll~~~~~~~~~~~~~  513 (553)
T PRK12370        438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ--NS--ERALPTIREFLESEQRIDNNPGLL  513 (553)
T ss_pred             ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc--cH--HHHHHHHHHHHHHhhHhhcCchHH
Confidence            77888899999999999999999999999888888888888899988887  77  477777777666543333333347


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 008705          482 AKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +.++.-.|+.+.+..+ +++.+
T Consensus       514 ~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        514 PLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             HHHHHHHhhhHHHHHH-HHhhc
Confidence            8888888888888777 66655

>PRK12370 invasion protein regulator; Provisional

Probab=99.90  E-value=4.6e-21  Score=197.05  Aligned_cols=252  Identities=13%  Similarity=-0.010  Sum_probs=216.8

Q ss_pred             hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705          249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR---------EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF  319 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  319 (557)
                      +.+++|+..|+++++.+|+++.++..+|.++...+         ++++|+..++++++.+|+                  
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~------------------  336 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN------------------  336 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC------------------
Confidence            45789999999999999999999998888876443         367777777777777775                  


Q ss_pred             hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                                      ++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++
T Consensus       337 ----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~  400 (553)
T PRK12370        337 ----------------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK  400 (553)
T ss_pred             ----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                            5778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705          400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL  478 (557)
Q Consensus       400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  478 (557)
                      ++|.++..+..++.++...|++++|+..+++++... |+++..+..+|.++..  .|++++|...+.++....|....+.
T Consensus       401 l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~--~G~~~eA~~~~~~~~~~~~~~~~~~  478 (553)
T PRK12370        401 LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL--KGKHELARKLTKEISTQEITGLIAV  478 (553)
T ss_pred             cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh--CCCHHHHHHHHHHhhhccchhHHHH
Confidence            999998887777878888999999999999999875 7889999999999999  9999999999999999999988899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ..++..|...|  ++|...+++.++....    .+.+   ...++.++.-.|+.+.|..+ +++.+.+
T Consensus       479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~----~~~~---~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        479 NLLYAEYCQNS--ERALPTIREFLESEQR----IDNN---PGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHHHhccH--HHHHHHHHHHHHHhhH----hhcC---chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            99999999988  4888888887763221    2222   23378888889999988888 7776653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.90  E-value=1.2e-20  Score=167.34  Aligned_cols=304  Identities=14%  Similarity=0.100  Sum_probs=267.7

Q ss_pred             chhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcC
Q 008705          151 SNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLN  230 (557)
Q Consensus       151 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~  230 (557)
                      ....+..+..++.........+|++-.++|.+|.+|...|+-.-|+.-+.+++++-|+...+....              
T Consensus        47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR--------------  112 (504)
T KOG0624|consen   47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR--------------  112 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh--------------
Confidence            335667788888888888999999999999999999999999999999999999999988877655              


Q ss_pred             CChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH---HH------------HHHHHHHHHhcccHHHHHHHHHHH
Q 008705          231 LNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSN---YI------------QAQIAKAQYSLREFEQVEVIFEEL  295 (557)
Q Consensus       231 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~~  295 (557)
                                 |.+++++|++++|..-|+.++..+|.+.   ++            +......++..|+...|+....++
T Consensus       113 -----------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l  181 (504)
T KOG0624|consen  113 -----------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL  181 (504)
T ss_pred             -----------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence                       9999999999999999999999988532   22            234445566779999999999999


Q ss_pred             HHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHH
Q 008705          296 LRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT  375 (557)
Q Consensus       296 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  375 (557)
                      +++.|-+.......+.++...+....++.-.+.+.++..++.+.++.++.+++..|+.+.++...+.+++++|+.-..+.
T Consensus       182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~  261 (504)
T KOG0624|consen  182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP  261 (504)
T ss_pred             HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998754322


Q ss_pred             ------------HHhHHHHhcCCchHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705          376 ------------LMGHEYVEMKNTPAAIDAYRRAVDINPRDY----RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS  439 (557)
Q Consensus       376 ------------~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  439 (557)
                                  .-+....+.++|.++++..++.++.+|..+    .....+..|+..-+++.+|+..+.+++..+|++.
T Consensus       262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv  341 (504)
T KOG0624|consen  262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV  341 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence                        123445678899999999999999999843    3455678899999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705          440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      .++...+.+|..  ...|+.|+..|++|.+.++++..+...+
T Consensus       342 ~~l~dRAeA~l~--dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  342 QVLCDRAEAYLG--DEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             HHHHHHHHHHhh--hHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            999999999999  9999999999999999999987765544

>TIGR00540 hemY_coli hemY protein

Probab=99.89  E-value=5.5e-20  Score=182.30  Aligned_cols=296  Identities=12%  Similarity=-0.054  Sum_probs=252.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHhccc
Q 008705          240 FLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV-DDMDMYSNVLYAKEC  318 (557)
Q Consensus       240 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~  318 (557)
                      ..|......|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|.+. ......+.++...++
T Consensus        89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence            4588899999999999999999999998888888999999999999999999999999998875 345557999999999


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHH----HHHhHHHHhcCCchHHHHHH
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW----TLMGHEYVEMKNTPAAIDAY  394 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~l~~~~~~~~~~~~A~~~~  394 (557)
                      ++.+...++.+....|.++.++..++.++...|++++|...+.+..+....+....    ..........+..+++...+
T Consensus       169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999999999999999999999998754433322    12222234445556667788


Q ss_pred             HHHHhhCC----CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH--HHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705          395 RRAVDINP----RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW--IAMAQCYETEQLHMLEEAIKCYRRAA  468 (557)
Q Consensus       395 ~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--~~l~~~~~~~~~~~~~~A~~~~~~al  468 (557)
                      .++....|    +++..+..++..+...|++++|+..++++++..|++....  .........  .++.+.+++.+++++
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~--~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK--PEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC--CCChHHHHHHHHHHH
Confidence            88888777    5899999999999999999999999999999999987532  223333444  678899999999999


Q ss_pred             hcCCChH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          469 NCNDSEA--IALNQLAKLHHALGRDEEAAFYYK--KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       469 ~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      +..|+++  .++..+|+++.+.|++++|.++|+  .+++       ..|+... +..+|.++.+.|+.++|.++|++++.
T Consensus       327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999  899999999999999999999999  4666       5676555 66999999999999999999999865


Q ss_pred             c
Q 008705          545 Y  545 (557)
Q Consensus       545 ~  545 (557)
                      .
T Consensus       399 ~  399 (409)
T TIGR00540       399 L  399 (409)
T ss_pred             H
Confidence            4

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.89  E-value=3.3e-21  Score=181.83  Aligned_cols=237  Identities=16%  Similarity=0.104  Sum_probs=190.2

Q ss_pred             cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHH
Q 008705          282 LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFR  361 (557)
Q Consensus       282 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  361 (557)
                      .+..+.++..+.+++...|-++                              +..+..++.+|.+|...|++++|+..|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~------------------------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~   88 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTD------------------------------EERAQLHYERGVLYDSLGLRALARNDFS   88 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCc------------------------------HhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3566778888888886544321                              2346789999999999999999999999


Q ss_pred             HHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 008705          362 RALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL  441 (557)
Q Consensus       362 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  441 (557)
                      ++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+|.++|.++...|++++|+..|+++++.+|+++..
T Consensus        89 ~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~  168 (296)
T PRK11189         89 QALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR  168 (296)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999842


Q ss_pred             HHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 008705          442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF  521 (557)
Q Consensus       442 ~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  521 (557)
                      ... ..+...  .+++++|+..|.++....+...  +. .+.++...|+..++ ..++.+.+.+.......|..+++|+.
T Consensus       169 ~~~-~~l~~~--~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~  241 (296)
T PRK11189        169 ALW-LYLAES--KLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFY  241 (296)
T ss_pred             HHH-HHHHHc--cCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            222 223445  7899999999988775543322  22 35666667777554 34444443221111245677899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 008705          522 LATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLK  555 (557)
Q Consensus       522 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~  555 (557)
                      +|.++...|++++|+.+|+++++.+|++..+...
T Consensus       242 Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~  275 (296)
T PRK11189        242 LAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY  275 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence            9999999999999999999999999988877654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=7.6e-22  Score=173.73  Aligned_cols=249  Identities=17%  Similarity=0.196  Sum_probs=225.9

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                      +|.-...+|.||+++|.+.+|.+.++..++.+| .++.+..++.+|.+..+...|+..|.+.++..|.+           
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-----------  289 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-----------  289 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-----------
Confidence            444455689999999999999999999999887 67788999999999999999999999999988874           


Q ss_pred             HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHH
Q 008705          314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA  393 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  393 (557)
                                             ....+.++.++..+++.++|.++|+.+++.+|.+.++...+|..|+-.++++-|+.+
T Consensus       290 -----------------------VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry  346 (478)
T KOG1129|consen  290 -----------------------VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY  346 (478)
T ss_pred             -----------------------hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence                                   445667889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705          394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC  470 (557)
Q Consensus       394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~  470 (557)
                      |++.+++.-.+++.+.++|.++...++++-++..|++++....+   -.++|+++|.+...  .|++.-|.++|+-++..
T Consensus       347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~--iGD~nlA~rcfrlaL~~  424 (478)
T KOG1129|consen  347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT--IGDFNLAKRCFRLALTS  424 (478)
T ss_pred             HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe--ccchHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999987542   36799999999999  99999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH
Q 008705          471 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC  526 (557)
Q Consensus       471 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  526 (557)
                      ++++.+++.+||.+-.+.|+.++|..++..+-.       ..|...+..++++.+-
T Consensus       425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-------~~P~m~E~~~Nl~~~s  473 (478)
T KOG1129|consen  425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKS-------VMPDMAEVTTNLQFMS  473 (478)
T ss_pred             CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-------hCccccccccceeEEe
Confidence            999999999999999999999999999999888       6788777777766443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.88  E-value=4.6e-19  Score=173.43  Aligned_cols=304  Identities=16%  Similarity=0.048  Sum_probs=258.3

Q ss_pred             CCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDK-----------GNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFL  241 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~l  241 (557)
                      -..+.++..+|.+|-.+           ....++++.++++++.+|.|+.+.+.+                         
T Consensus       430 ~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l-------------------------  484 (799)
T KOG4162|consen  430 HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL-------------------------  484 (799)
T ss_pred             hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH-------------------------
Confidence            45678888888888543           246789999999999999999776544                         


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          242 ASAYQELRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      +.-|...++.+.|+....++++. ..+++..|..+|.++...+++.+|+.+.+.++...|.|...++....+-...++.+
T Consensus       485 alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e  564 (799)
T KOG4162|consen  485 ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDRE  564 (799)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHH
Confidence            99999999999999999999999 55689999999999999999999999999999999999888888888888888888


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHH---------HHHHhhhCchHHHHHHHHHHHhc--------C-----c------CC--
Q 008705          321 ALSYLAHRVFMTDKYRPESCCII---------GNYYSLKGQHEKSVVYFRRALKL--------D-----K------NY--  370 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~--------~-----p------~~--  370 (557)
                      ++...+...+......+.+...+         +......++..+|+...+++...        +     |      ..  
T Consensus       565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~  644 (799)
T KOG4162|consen  565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS  644 (799)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence            88888877766555333332222         22233344555666665555432        1     1      11  


Q ss_pred             -----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 008705          371 -----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM  445 (557)
Q Consensus       371 -----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  445 (557)
                           ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++++|...|..++.++|+++.+...+
T Consensus       645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al  724 (799)
T KOG4162|consen  645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL  724 (799)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence                 245788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHhcCcHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          446 AQCYETEQLHMLEEAIK--CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       446 ~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      |.++..  .|+..-|..  .+..+++++|.++++|+.+|.++.++|+.++|.++|..+++
T Consensus       725 a~~lle--~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  725 AELLLE--LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHH--hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            999999  998888888  99999999999999999999999999999999999999998

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.87  E-value=7.5e-18  Score=181.29  Aligned_cols=363  Identities=9%  Similarity=-0.005  Sum_probs=288.1

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHH--HHHHHHhhh-------cHHHHhhcCCChhHHHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNA--WSELKSLCT-------SIDILNSLNLNNHWMKDYFLAS  243 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~la~  243 (557)
                      ++.+.....+ ..+.+.|++++|+++|+.+.+.+...+..  +..+...+.       ....+..+..+ +...+-.+-.
T Consensus       368 ~~~~~~~~~y-~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~p-d~~Tyn~LL~  445 (1060)
T PLN03218        368 RKSPEYIDAY-NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNP-TLSTFNMLMS  445 (1060)
T ss_pred             CCchHHHHHH-HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence            3334433333 45568899999999999988766433322  222222221       11122223333 3333444567


Q ss_pred             HHHHHhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHhccchhH
Q 008705          244 AYQELRMHKESLTKYEYLQGTF-SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY-RVDDMDMYSNVLYAKECFSA  321 (557)
Q Consensus       244 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~  321 (557)
                      .+...|++++|..+++.+.+.. ..+...+..+...|.+.|++++|..+|+++.+.... +...+..+...+...++.++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            7889999999999999998754 346788999999999999999999999999986532 55677888888999999999


Q ss_pred             HHHHHHHHHhhC-CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc----CcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          322 LSYLAHRVFMTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL----DKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       322 ~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                      +..++..+.... ..+..+|..+...|.+.|++++|...|.++...    .|+ ...|..+...|.+.|++++|.+.|+.
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999998876543 346788999999999999999999999999763    343 67888899999999999999999999


Q ss_pred             HHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CC
Q 008705          397 AVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DS  473 (557)
Q Consensus       397 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~  473 (557)
                      +.+.+ +.+...|..+...|.+.|++++|+.+|.++.+.. ..+...|..+...+.+  .|++++|.++++++.+.. +.
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k--~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--AGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCC
Confidence            99876 4577899999999999999999999999998763 2246789999999999  999999999999998864 34


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          474 EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      +..++..+...|.+.|++++|...|+++.+.     +..| +...|..+...|.+.|++++|.++|+++....
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G  749 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-----KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLG  749 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            5778999999999999999999999988762     1234 56789999999999999999999999987654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.87  E-value=1.5e-18  Score=171.09  Aligned_cols=294  Identities=11%  Similarity=0.028  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHhcccHHHHHHHHHHHHHhCCCCCCcHH-HHHHHHHhc
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQI-AKAQYSLREFEQVEVIFEELLRNDPYRVDDMD-MYSNVLYAK  316 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~~~~~~~~~  316 (557)
                      +..|......|++++|.+...+..+..+ ++.+++.+ +......|+++.|..++.++.+.+|++..... ..+.++...
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~  166 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR  166 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence            3458888888999999988887655433 34444444 66669999999999999999999998754433 448889999


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHH--------HHHHhHHHHhcCCch
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSA--------WTLMGHEYVEMKNTP  388 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------~~~l~~~~~~~~~~~  388 (557)
                      ++++.+...++.+....|.++.+...++.+|...|++++|+..+.+..+..+.+...        +..+........+.+
T Consensus       167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~  246 (398)
T PRK10747        167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE  246 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999999999999999999999999999988876654332        222222222333444


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705          389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA  468 (557)
Q Consensus       389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al  468 (557)
                      .....++..-...|+++.+...++..+...|+.++|...++++++ .|.++......+.+  .  .++++++++..++.+
T Consensus       247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~--~~~~~~al~~~e~~l  321 (398)
T PRK10747        247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--K--TNNPEQLEKVLRQQI  321 (398)
T ss_pred             HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--c--CCChHHHHHHHHHHH
Confidence            555555555556677999999999999999999999999999999 45566655555543  4  689999999999999


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      +..|+++..+..+|.++...|++++|.++|+++++       ..|+.. .+..++.++.+.|+.++|..+|++++.+.
T Consensus       322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-------~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-------QRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999       677765 46689999999999999999999998864

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.86  E-value=1.2e-19  Score=152.98  Aligned_cols=206  Identities=19%  Similarity=0.219  Sum_probs=191.5

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      ..+...+|.-|...|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++|+.++|++.+++++.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          417 MMHMPLYALHYFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      .+|++++|...|++++..  .+..+..|.++|.|..+  .|+++.|...|++++..+|+.+.....++..++..|++-.|
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~--~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK--AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh--cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            999999999999999974  35567899999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ..++++...       ..+...+.+....++-...|+-+.|..+=.+.....|...+
T Consensus       193 r~~~~~~~~-------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         193 RLYLERYQQ-------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             HHHHHHHHh-------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            999999888       45677888888889999999999999998888888766544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.86  E-value=2.1e-18  Score=170.05  Aligned_cols=293  Identities=12%  Similarity=0.059  Sum_probs=186.2

Q ss_pred             chhHHHHHHHHhhhhcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705          155 NRELISLERELSTSWKNGTVDPFGLYLY-GIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN  233 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~  233 (557)
                      .+++..+.+.+....+. .++|..++++ +....+.|+++.|..+|.++.+.+|++..+..                   
T Consensus        97 eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~-------------------  156 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVE-------------------  156 (398)
T ss_pred             CCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHH-------------------
Confidence            34555555555443322 2234444444 34446666666666666666666666532211                   


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                           ...+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.+.+....+.   
T Consensus       157 -----l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~---  228 (398)
T PRK10747        157 -----ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE---  228 (398)
T ss_pred             -----HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH---
Confidence                 112556666666666666666666666666666666666666666666666666666665543222111000   


Q ss_pred             HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHH
Q 008705          314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA  393 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  393 (557)
                                             ..++..+........+-+.....++......|+++.++..++..+...|+.++|...
T Consensus       229 -----------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~  285 (398)
T PRK10747        229 -----------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI  285 (398)
T ss_pred             -----------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence                                   001111111111222334444444444444567888888888888888888888888


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                      ++++++. +.++......+.+  ..+++++++..+++.++.+|+++..+..+|.++..  .+++++|...|+++++..|+
T Consensus       286 L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~--~~~~~~A~~~le~al~~~P~  360 (398)
T PRK10747        286 ILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK--HGEWQEASLAFRAALKQRPD  360 (398)
T ss_pred             HHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCC
Confidence            8888884 4455544444443  34888888888888888888888888888888888  88888888888888888887


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          474 EAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      +.. +..++.++.+.|+.++|..+|++++..
T Consensus       361 ~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        361 AYD-YAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            644 557888888888888888888888763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.86  E-value=2e-19  Score=165.56  Aligned_cols=202  Identities=20%  Similarity=0.200  Sum_probs=189.4

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY  415 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  415 (557)
                      .+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705          416 EMMHMPLYALHYFRKSVFLQ--PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  493 (557)
                      ...|++++|+..|++++...  +.....+..+|.++..  .|++++|...+.+++...|.++.++..+|.++...|++++
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK--AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999854  4567789999999999  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      |..++++++.       ..|..+..+..++.++...|+.++|..+.+.+....
T Consensus       188 A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       188 ARAYLERYQQ-------TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            9999999998       457778888899999999999999999988887654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.86  E-value=3.3e-19  Score=168.22  Aligned_cols=237  Identities=17%  Similarity=0.077  Sum_probs=187.6

Q ss_pred             HhhhHHHHHHHHHHHhcCC---C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705          248 LRMHKESLTKYEYLQGTFS---F-SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS  323 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  323 (557)
                      .+..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+                      
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----------------------   96 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD----------------------   96 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------------
Confidence            3567888899999986433   3 4677999999999999999999999999998886                      


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705          324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR  403 (557)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  403 (557)
                                  ++.+++.+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|++.|+++++.+|+
T Consensus        97 ------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189         97 ------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             ------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                        56788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHH--HHHHHH----HHhcCCChHHH
Q 008705          404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA--IKCYRR----AANCNDSEAIA  477 (557)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A--~~~~~~----al~~~p~~~~~  477 (557)
                      ++.... ...+....+++++|+..|.+++...+.+.  |. .+.+...  .|+..++  +..+.+    ..++.|..+++
T Consensus       165 ~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea  238 (296)
T PRK11189        165 DPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCET  238 (296)
T ss_pred             CHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            874222 12234567889999999988775543222  22 3455555  6665433  333332    23455667789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC-cchHHHHHHHHHHHHHcCC
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG-PNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~  531 (557)
                      |+.+|.++...|++++|+.+|+++++       .+ ++.++..+.+..+....+.
T Consensus       239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~-------~~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        239 YFYLAKYYLSLGDLDEAAALFKLALA-------NNVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCchHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999       45 4777777776666655444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=8.4e-20  Score=166.05  Aligned_cols=271  Identities=15%  Similarity=0.111  Sum_probs=239.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      +.-....|..+++..+|.+|+..|..|+..+|++...|..-                         +.+++..|++++|.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nR-------------------------Aa~~m~~~~~~~a~  103 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNR-------------------------AATLMMLGRFEEAL  103 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchh-------------------------HHHHHHHHhHhhcc
Confidence            44556678888999999999999999999999998777544                         88999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH------------HhC------CCCCCcHHHHHHHHHhcc
Q 008705          256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL------------RND------PYRVDDMDMYSNVLYAKE  317 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------------~~~------p~~~~~~~~~~~~~~~~~  317 (557)
                      -..++.+.+.|..+......++|+...++..+|...++..-            .+-      |....+...-+.++...+
T Consensus       104 ~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~  183 (486)
T KOG0550|consen  104 GDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG  183 (486)
T ss_pred             cchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc
Confidence            99999999999999999999999999999888886665221            111      222334566678888899


Q ss_pred             chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------------HHHHHHhHHHHhcC
Q 008705          318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------------SAWTLMGHEYVEMK  385 (557)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~~~  385 (557)
                      +...+......+++.++.+.++.+..|.+++..++.+.|+.+|++++.++|+..            ..|...|.-.++.|
T Consensus       184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G  263 (486)
T KOG0550|consen  184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG  263 (486)
T ss_pred             cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence            999999999999999999999999999999999999999999999999999864            44778899999999


Q ss_pred             CchHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHH
Q 008705          386 NTPAAIDAYRRAVDINPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI  461 (557)
Q Consensus       386 ~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~  461 (557)
                      ++..|.++|..+|.++|++    ...|.+++.+...+|+..+|+..++.+++++|....++...|.|+..  ++++++|+
T Consensus       264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~--le~~e~AV  341 (486)
T KOG0550|consen  264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA--LEKWEEAV  341 (486)
T ss_pred             chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            9999999999999999987    55688999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHHhcCCC
Q 008705          462 KCYRRAANCNDS  473 (557)
Q Consensus       462 ~~~~~al~~~p~  473 (557)
                      +.|+++++...+
T Consensus       342 ~d~~~a~q~~~s  353 (486)
T KOG0550|consen  342 EDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHhhccc
Confidence            999999987655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.86  E-value=1.9e-17  Score=159.10  Aligned_cols=429  Identities=11%  Similarity=0.050  Sum_probs=251.5

Q ss_pred             chhhHHHHHHHhhhhhhHHHHHHHHhhhcCCc-----hhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHH
Q 008705           89 EDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR-----SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLER  163 (557)
Q Consensus        89 ~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (557)
                      .|.+.|.-+.-.|..|+|.+-+++.+.+++..     ...+........|.                       .+++..
T Consensus         6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~-----------------------~~ea~~   62 (700)
T KOG1156|consen    6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK-----------------------KEEAYE   62 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc-----------------------hHHHHH
Confidence            46777877888999999999999888776522     22222233333332                       223333


Q ss_pred             HHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhc--------C-CChh
Q 008705          164 ELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSL--------N-LNNH  234 (557)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l--------~-~~~~  234 (557)
                      .+.....+++.+..+|..+|.++...++|++|+++|+.|+..+|+|...|..++-+...+..+...        . .+..
T Consensus        63 ~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen   63 LVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             HHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            344455678999999999999999999999999999999999999999999985444433332211        1 1122


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcH
Q 008705          235 WMKDYFLASAYQELRMHKESLTKYEYLQGTF---SFS-----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM  306 (557)
Q Consensus       235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  306 (557)
                      -..++..+..+...|++..|..+.+...+..   |..     ..........+...|.+++|.+.+...-...-+.....
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~  222 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE  222 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh
Confidence            2222223444555555555555444443322   211     11223333344444444444444433332222222333


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHH-HHHHHHHhcCcCCHHHHHHHhHH-----
Q 008705          307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSV-VYFRRALKLDKNYLSAWTLMGHE-----  380 (557)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~-----  380 (557)
                      ...+.++...++.+++..++..++..+|++...+..+-.++....+--+++ ..|...-+..|..... ..++..     
T Consensus       223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~e  301 (700)
T KOG1156|consen  223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGE  301 (700)
T ss_pred             hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcc
Confidence            444445555555555555555555555555555544444443112222222 3333332222221100 000000     


Q ss_pred             --------H----Hhc-------------CCchHHHHHHHHHHh-----h------C--------CCC--hHHHHHHHHH
Q 008705          381 --------Y----VEM-------------KNTPAAIDAYRRAVD-----I------N--------PRD--YRAWYGLGQA  414 (557)
Q Consensus       381 --------~----~~~-------------~~~~~A~~~~~~al~-----~------~--------p~~--~~~~~~l~~~  414 (557)
                              +    ++.             .+... ....++.+.     +      +        |..  ...++.+++-
T Consensus       302 el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh  380 (700)
T KOG1156|consen  302 ELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH  380 (700)
T ss_pred             hhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence                    0    000             01010 001111111     0      0        111  2345678899


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      +...|+++.|..+.+.|+...|+-++.+...|.++..  .|.+++|...+..+.+++..+..+-..-|....+.++.++|
T Consensus       381 ~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH--~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA  458 (700)
T KOG1156|consen  381 YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH--AGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEA  458 (700)
T ss_pred             HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh--cCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHH
Confidence            9999999999999999999999999999999999999  99999999999999999877776666889999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcchH-HHHH--HHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          495 AFYYKKDLERMEAEEREGPNMV-EALI--FLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~-~~~~--~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      .+...+.-+.-. ....+-... -.|+  .-|..|.++|++..|+.-|..+-++
T Consensus       459 ~~~~skFTr~~~-~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~  511 (700)
T KOG1156|consen  459 EEVLSKFTREGF-GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH  511 (700)
T ss_pred             HHHHHHhhhccc-chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence            988877665100 000011111 1233  3478899999999998877766543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=4.1e-20  Score=175.48  Aligned_cols=254  Identities=13%  Similarity=0.071  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      |..|..+++.|+..+|.-.|+.++..+|.+.++|..+|.++...++-..|+..++++++++|++.+++..++..+...+.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            44599999999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHH-------HHHHHHhhhCchHHHHHHHHHHHhcCc--CCHHHHHHHhHHHHhcCCchH
Q 008705          319 FSALSYLAHRVFMTDKYRPESCC-------IIGNYYSLKGQHEKSVVYFRRALKLDK--NYLSAWTLMGHEYVEMKNTPA  389 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~  389 (557)
                      ...+...+...+...|.....-.       ....-......+..-.+.|-.+....|  .++++...||.+|.-.|+|+.
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            88888888777666543211100       000011122234455566777777777  678888888888888888888


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705          390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~  469 (557)
                      |+.+|+.|+...|+|...|..||.++..-.+.++|+..|++|+++.|...++++++|.+++.  +|.|.+|+++|-.|+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN--lG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN--LGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh--hhhHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888  8888888888888887


Q ss_pred             cCCCh----------HHHHHHHHHHHHHcCCHHHH
Q 008705          470 CNDSE----------AIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       470 ~~p~~----------~~~~~~la~~~~~~g~~~~A  494 (557)
                      +.+..          ..+|..|=.++..+++.+-+
T Consensus       527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             hhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            75431          13555555555555555533

>PLN03077 Protein ECB2; Provisional

Probab=99.84  E-value=3.1e-17  Score=178.89  Aligned_cols=429  Identities=13%  Similarity=0.088  Sum_probs=310.3

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHhhhcC----Cchh-hHHHHHHHHhhcccchHHHHHhhCC-----CC-C---------c
Q 008705           92 DFYLLAKSYFDCREYRRAAHVLRDQTG----RRSV-FLRCYALYLAGEKRKEEEMIELEGP-----LG-K---------S  151 (557)
Q Consensus        92 ~~~~la~~~~~~~~y~~A~~~l~~~~~----~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~-----~~-~---------~  151 (557)
                      ..-.+-..|.+.|++++|..+|++...    ++.. |......+  +..+..+.+.++...     +. .         .
T Consensus       255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~--~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~  332 (857)
T PLN03077        255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC--ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM  332 (857)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence            344567889999999999999998743    2211 11111111  112222222222111     10 0         0


Q ss_pred             hhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcc--CCCCHHHHHHHHHhhhcHHHH---
Q 008705          152 NAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNS--YPWNWNAWSELKSLCTSIDIL---  226 (557)
Q Consensus       152 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~---  226 (557)
                      ....+.+..+.+-++.+.   ..|...|..+...|.+.|++++|+.+|+++.+.  .|+... +..+...+...+.+   
T Consensus       333 y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a  408 (857)
T PLN03077        333 YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACACLGDLDVG  408 (857)
T ss_pred             HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHH
Confidence            112345566666666543   456778999999999999999999999988654  355433 33332222221111   


Q ss_pred             -------hhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008705          227 -------NSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND  299 (557)
Q Consensus       227 -------~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  299 (557)
                             ..............+...|.+.|+.++|.+.|+++.+   .+...|..+...+...|++++|+..|++++...
T Consensus       409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~  485 (857)
T PLN03077        409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL  485 (857)
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence                   1122333444444567888999999999999988754   345678888888999999999999999988654


Q ss_pred             CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC-CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHh
Q 008705          300 PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG  378 (557)
Q Consensus       300 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  378 (557)
                      +.+...+..+...+...+..+....+...++... ..+..+...+...|.+.|+.++|...|+..    +.+..+|..+.
T Consensus       486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI  561 (857)
T PLN03077        486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILL  561 (857)
T ss_pred             CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHH
Confidence            4344444555555666777777777766665543 335556677889999999999999999886    56788999999


Q ss_pred             HHHHhcCCchHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhHHhc
Q 008705          379 HEYVEMKNTPAAIDAYRRAVDI--NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--NDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       379 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~  454 (557)
                      ..|...|+.++|++.|++..+.  .| +..++..+...+.+.|+.++|..+|+.+.+..+  .+...|..+..++.+  .
T Consensus       562 ~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r--~  638 (857)
T PLN03077        562 TGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR--A  638 (857)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh--C
Confidence            9999999999999999998874  45 455677777889999999999999999884432  245788999999999  9


Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705          455 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE  534 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  534 (557)
                      |++++|.+.+++. ...|+ +.+|..|-..+...|+.+.|....+++++       ..|+++..+..++.+|...|++++
T Consensus       639 G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~-------l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        639 GKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFE-------LDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-------hCCCCcchHHHHHHHHHHCCChHH
Confidence            9999999999986 34554 66788888888889999999999999988       789999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 008705          535 AEVYCTRLLDY  545 (557)
Q Consensus       535 A~~~~~~al~~  545 (557)
                      |.+..+.+.+.
T Consensus       710 a~~vr~~M~~~  720 (857)
T PLN03077        710 VARVRKTMREN  720 (857)
T ss_pred             HHHHHHHHHHc
Confidence            99999888654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.84  E-value=2.3e-17  Score=175.72  Aligned_cols=295  Identities=14%  Similarity=0.091  Sum_probs=245.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      .|..++..+...|.+.|++++|.++|+++..   .+..+|..                         +...|.+.|++++
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~-------------------------li~~y~~~g~~~e  308 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNS-------------------------MLAGYALHGYSEE  308 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHH-------------------------HHHHHHhCCCHHH
Confidence            3455566666777777777777777776543   23344443                         3888999999999


Q ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705          254 SLTKYEYLQGTF-SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND-PYRVDDMDMYSNVLYAKECFSALSYLAHRVFM  331 (557)
Q Consensus       254 A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (557)
                      |+..|+++.... ..+...+..+..++...|++++|..++..+++.. +.+......+...+...|+.+++..++..+..
T Consensus       309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~  388 (697)
T PLN03081        309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR  388 (697)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            999999997642 3366788999999999999999999999999876 55677888899999999999999999988654


Q ss_pred             hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC--CChHHH
Q 008705          332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP--RDYRAW  408 (557)
Q Consensus       332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~  408 (557)
                         .+..+|..+...|...|+.++|++.|++..+.. ..+...+..+...+...|..++|.++|+...+..+  .+...|
T Consensus       389 ---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y  465 (697)
T PLN03081        389 ---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY  465 (697)
T ss_pred             ---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence               367789999999999999999999999988753 22456788888999999999999999999986432  245678


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      ..+..++.+.|++++|.+.++++- ..| +..+|..+...+..  .|+++.|...+++.+.+.|++...|..++.+|.+.
T Consensus       466 ~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~--~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        466 ACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRI--HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             HhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH--cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            899999999999999999998752 333 56789999999999  99999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 008705          489 GRDEEAAFYYKKDLE  503 (557)
Q Consensus       489 g~~~~A~~~~~~al~  503 (557)
                      |++++|.+.++...+
T Consensus       542 G~~~~A~~v~~~m~~  556 (697)
T PLN03081        542 GRQAEAAKVVETLKR  556 (697)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.84  E-value=7.1e-18  Score=148.92  Aligned_cols=296  Identities=14%  Similarity=0.172  Sum_probs=246.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705          179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY  258 (557)
Q Consensus       179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~  258 (557)
                      -|..|.-+.-.++.++|++.|..+++.+|...++...|                         |..+...|..+.|+.+-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL-------------------------GnLfRsRGEvDRAIRiH   92 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL-------------------------GNLFRSRGEVDRAIRIH   92 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH-------------------------HHHHHhcchHHHHHHHH
Confidence            46778888889999999999999999999888877666                         99999999999999988


Q ss_pred             HHHHhcCCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705          259 EYLQGTFSF-----SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD  333 (557)
Q Consensus       259 ~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (557)
                      +.+++. |+     ...++..+|.-|...|-++.|...|..+.+.......+...+..+|....++++++..+.+.....
T Consensus        93 Q~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~  171 (389)
T COG2956          93 QTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG  171 (389)
T ss_pred             HHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence            887653 43     245678899999999999999999999988777777888899999999999999999999888887


Q ss_pred             CCC-----hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-hHH
Q 008705          334 KYR-----PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-YRA  407 (557)
Q Consensus       334 ~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~  407 (557)
                      +..     +..+|.++..+....++++|+..+.+|++.+|++..+-..+|.++...|+++.|++.++.+++.+|.. +.+
T Consensus       172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev  251 (389)
T COG2956         172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV  251 (389)
T ss_pred             CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence            653     45688999999999999999999999999999999999999999999999999999999999999976 667


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH-  486 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-  486 (557)
                      .-.|..+|..+|+.++.+..+.++.+..+.. .+...++..-..  ..-.+.|...+.+-+...|+--..+..+..-.. 
T Consensus       252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~--~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d  328 (389)
T COG2956         252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIEL--QEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD  328 (389)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHH--hhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence            7889999999999999999999999988764 445556666666  667788999888888888875444433332222 


Q ss_pred             -HcCCHHHHHHHHHHHHH
Q 008705          487 -ALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       487 -~~g~~~~A~~~~~~al~  503 (557)
                       ..|...+.+..++..+.
T Consensus       329 aeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         329 AEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             ccccchhhhHHHHHHHHH
Confidence             23445666666666654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.84  E-value=3.5e-17  Score=157.36  Aligned_cols=350  Identities=15%  Similarity=0.118  Sum_probs=260.2

Q ss_pred             HHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHH
Q 008705          163 RELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLA  242 (557)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la  242 (557)
                      +.++.+++..|..++.+-+.|..+...|+.++|......+++.++.+.-+|..+                         |
T Consensus        28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~-------------------------g   82 (700)
T KOG1156|consen   28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL-------------------------G   82 (700)
T ss_pred             HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH-------------------------H
Confidence            335556667899999999999999999999999999999999999999999877                         9


Q ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705          243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL  322 (557)
Q Consensus       243 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  322 (557)
                      .++....+|++|+++|+.++...|++..++..++....++++++-....-.+.++..|.....|..++......+.+..+
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhhCC--CC------hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705          323 SYLAHRVFMTDK--YR------PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY  394 (557)
Q Consensus       323 ~~~~~~~~~~~~--~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  394 (557)
                      ..+.........  .+      .+............|..++|++.+..--..--+........|.+++.++++++|+..|
T Consensus       163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y  242 (700)
T KOG1156|consen  163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY  242 (700)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence            888777665542  12      2233445566677788888887776543322233444566889999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCH--------------------------------HH
Q 008705          395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYAL-HYFRKSVFLQPNDS--------------------------------RL  441 (557)
Q Consensus       395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~~~--------------------------------~~  441 (557)
                      +..+..+|++...+..+-.++..-.+--+++ ..|...-+..|...                                .+
T Consensus       243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v  322 (700)
T KOG1156|consen  243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV  322 (700)
T ss_pred             HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence            9999999999888887777775222233333 55554443332210                                00


Q ss_pred             HHHHHHHHhHHhcCcHHHHHHHHHHHHh-------cC------------CCh--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          442 WIAMAQCYETEQLHMLEEAIKCYRRAAN-------CN------------DSE--AIALNQLAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       442 ~~~l~~~~~~~~~~~~~~A~~~~~~al~-------~~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~  500 (557)
                      ...+-..|     .+..+ ..+.++.+.       -.            |..  .+.++.++.-+...|+++.|..+++.
T Consensus       323 f~dl~SLy-----k~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~  396 (700)
T KOG1156|consen  323 FKDLRSLY-----KDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL  396 (700)
T ss_pred             hhhhHHHH-----hchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            00111111     11111 112222221       10            111  23556677778888888888888888


Q ss_pred             HHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          501 DLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       501 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      ++.       ..|..++.+...|+++...|++++|..++..+.++|-+|.
T Consensus       397 AId-------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  397 AID-------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             Hhc-------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence            887       6788888888888888888888888888888888775543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.83  E-value=3.1e-18  Score=144.58  Aligned_cols=207  Identities=17%  Similarity=0.130  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705          269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS  348 (557)
Q Consensus       269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  348 (557)
                      ..+...+|..|...|++..|...++++++.+|+                                  ...+|..++.+|.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----------------------------------~~~a~~~~A~~Yq   80 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----------------------------------YYLAHLVRAHYYQ   80 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------------------------cHHHHHHHHHHHH
Confidence            356889999999999999999999999999987                                  4677888999999


Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCChHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--NPRDYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                      ..|+.+.|.+.|++|+.++|++.+++++.|..++..|++++|...|++|+..  .+..+.+|-++|.|..+.|+++.|..
T Consensus        81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~  160 (250)
T COG3063          81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE  160 (250)
T ss_pred             HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence            9999999999999999999999999999999999999999999999999973  45568899999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705          427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      +|+++++++|+.+.....++..++.  .|++..|..++++.....+-....+.....+-...|+-+.|-++=.+...   
T Consensus       161 ~l~raL~~dp~~~~~~l~~a~~~~~--~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r---  235 (250)
T COG3063         161 YLKRALELDPQFPPALLELARLHYK--AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR---  235 (250)
T ss_pred             HHHHHHHhCcCCChHHHHHHHHHHh--cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH---
Confidence            9999999999999999999999999  99999999999999988888888888888999999998888877666665   


Q ss_pred             hhhcCCcchHHH
Q 008705          507 AEEREGPNMVEA  518 (557)
Q Consensus       507 ~~~~~~~~~~~~  518 (557)
                          ..|...+.
T Consensus       236 ----~fP~s~e~  243 (250)
T COG3063         236 ----LFPYSEEY  243 (250)
T ss_pred             ----hCCCcHHH
Confidence                56666554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.83  E-value=2.8e-18  Score=157.83  Aligned_cols=200  Identities=20%  Similarity=0.201  Sum_probs=170.2

Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705          268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY  347 (557)
Q Consensus       268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  347 (557)
                      ....+..+|.++...|++++|+..++++++.+|.                                  ++.++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------------------------------~~~~~~~la~~~   75 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------------------------------DYLAYLALALYY   75 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------------------------cHHHHHHHHHHH
Confidence            3567888888888889999999888888877765                                  345667788888


Q ss_pred             hhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCChHHHH
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN--PRDYRAWYGLGQAYEMMHMPLYAL  425 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~  425 (557)
                      ...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...  +.....+..+|.++...|++++|.
T Consensus        76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  155 (234)
T TIGR02521        76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE  155 (234)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence            888899999999999988888888888888999999999999999999888753  455677888899999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ..+.+++...|.++..+..+|.++..  .|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       156 KYLTRALQIDPQRPESLLELAELYYL--RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHhCcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999999888888899999988  99999999999999888888888888888999999999998888776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.83  E-value=2.2e-17  Score=161.49  Aligned_cols=252  Identities=19%  Similarity=0.190  Sum_probs=206.0

Q ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705          265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG  344 (557)
Q Consensus       265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  344 (557)
                      .|.-..+...++..|...|+|+.|+..++.+++.--...             |             ...+.-......+|
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~-------------G-------------~~hl~va~~l~~~a  248 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS-------------G-------------LKHLVVASMLNILA  248 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc-------------C-------------ccCHHHHHHHHHHH
Confidence            455556666788888888888888888888887611000             0             00111122333599


Q ss_pred             HHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC--------CChHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP--------RDYRAW  408 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~  408 (557)
                      .+|...+++.+|+..|++|+.+        +|....++.++|..|...|++++|..++++|+++..        .-...+
T Consensus       249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l  328 (508)
T KOG1840|consen  249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL  328 (508)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence            9999999999999999999976        344566799999999999999999999999998642        225567


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcC-----C---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC--------C
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQ-----P---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN--------D  472 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~--------p  472 (557)
                      ..++.++..++++++|+.++++++++.     +   .-+..+.++|.+|..  +|++++|.++|++++.+.        +
T Consensus       329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~--~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK--MGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            889999999999999999999998763     2   335688999999999  999999999999999863        2


Q ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          473 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      .....++++|..|.+.+++.+|...|.++.......++..|+....+.+||.+|..+|++++|.++.++++.
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            335688999999999999999999999999988666778889999999999999999999999999999984

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.82  E-value=3e-17  Score=164.41  Aligned_cols=227  Identities=17%  Similarity=0.178  Sum_probs=200.8

Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                      ++...+...+-+++..++.-+.++..+|.+|...-+...|.++|++|.++++.+..++-..+..|.+..+++.|....-.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            34455566677788899999999999999999999999999999999999999999999999999999999999999777


Q ss_pred             HHhhCCCC--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          397 AVDINPRD--YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       397 al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      +-+..|..  ...|..+|..|...+++..|+..|+.+++.+|.+.+.|..+|.+|..  .|++..|++.|.++..++|.+
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~--sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE--SGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh--cCceehHHHhhhhhHhcCcHh
Confidence            77766654  44577799999999999999999999999999999999999999999  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      ..+.+..|.+....|+|.+|+..+...+.............++.+..++..+.-.|-..+|..++++.++.
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~  700 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES  700 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999999999999988554444444566788888888888888888888888887754

>PLN03077 Protein ECB2; Provisional

Probab=99.82  E-value=2e-16  Score=172.69  Aligned_cols=433  Identities=13%  Similarity=0.045  Sum_probs=261.9

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhh--cccchHHHHHhhCCCC-----Cc-h---------hhc
Q 008705           93 FYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAG--EKRKEEEMIELEGPLG-----KS-N---------AVN  155 (557)
Q Consensus        93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~~~~-----~~-~---------~~~  155 (557)
                      .-.|-..|.++|+++.|..+|+....++..-   |...+.+  ..+..+++.++...+.     .. .         ...
T Consensus       225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s---~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~  301 (857)
T PLN03077        225 VNALITMYVKCGDVVSARLVFDRMPRRDCIS---WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL  301 (857)
T ss_pred             HhHHHHHHhcCCCHHHHHHHHhcCCCCCcch---hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence            3455778999999999999999987654332   1222222  2334555544321111     00 0         011


Q ss_pred             hhHHHHHHHHhhhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH-------Hh
Q 008705          156 RELISLERELSTSWK-NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI-------LN  227 (557)
Q Consensus       156 ~~l~~~~~~l~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~-------~~  227 (557)
                      +.+..+.+-.....+ .-..|...+..+...|.+.|++++|.++|+++...++   ..|..+...+...+.       +.
T Consensus       302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~---~s~n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA---VSWTAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe---eeHHHHHHHHHhCCCHHHHHHHHH
Confidence            222223333322222 2355778888888899999999999999998765433   344444322221111       00


Q ss_pred             h---cCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705          228 S---LNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTF-SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV  303 (557)
Q Consensus       228 ~---l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  303 (557)
                      .   .....+......+-..+...|+.++|.+++..+.+.. ..+..++..+...|.+.|++++|...|+++.+   .+.
T Consensus       379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~  455 (857)
T PLN03077        379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDV  455 (857)
T ss_pred             HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCe
Confidence            0   1111111111112224444555555555555554432 12334445555555555555555555554432   223


Q ss_pred             CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc-CCHHHHHHHhHHHH
Q 008705          304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK-NYLSAWTLMGHEYV  382 (557)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~  382 (557)
                      ..|..+...+...++..++..+++.+....+.+..++..+-..+...|+.+.+...+..+++... .+......+...|.
T Consensus       456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~  535 (857)
T PLN03077        456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV  535 (857)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence            34445555555555555555555555443333444444444555555555555555555544321 12334455668888


Q ss_pred             hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhHHhcCcHHHH
Q 008705          383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEA  460 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A  460 (557)
                      +.|+.++|...|+..    +.+..+|..+...|...|+.++|+..|+++.+.  .|+ ...+..+-..+.+  .|..++|
T Consensus       536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~--~g~v~ea  608 (857)
T PLN03077        536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSR--SGMVTQG  608 (857)
T ss_pred             HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhh--cChHHHH
Confidence            999999999988876    557889999999999999999999999988764  344 4456666677888  8999999


Q ss_pred             HHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 008705          461 IKCYRRAANCND--SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY  538 (557)
Q Consensus       461 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  538 (557)
                      ..+|+...+..+  .+...+..+..++.+.|++++|.+.+++.-        ..|+ +.+|..|-..+...|+.+.|...
T Consensus       609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--------~~pd-~~~~~aLl~ac~~~~~~e~~e~~  679 (857)
T PLN03077        609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--------ITPD-PAVWGALLNACRIHRHVELGELA  679 (857)
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--------CCCC-HHHHHHHHHHHHHcCChHHHHHH
Confidence            999998874322  235688889999999999999999888742        3443 56777777788889999999999


Q ss_pred             HHHHhccCCCch
Q 008705          539 CTRLLDYTGPVS  550 (557)
Q Consensus       539 ~~~al~~~~~~~  550 (557)
                      .+++++++|.+.
T Consensus       680 a~~l~~l~p~~~  691 (857)
T PLN03077        680 AQHIFELDPNSV  691 (857)
T ss_pred             HHHHHhhCCCCc
Confidence            999999987643

>PLN02789 farnesyltranstransferase

Probab=99.82  E-value=3.6e-18  Score=160.32  Aligned_cols=239  Identities=14%  Similarity=0.069  Sum_probs=199.5

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC-chHHHHHHHH
Q 008705          283 REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG-QHEKSVVYFR  361 (557)
Q Consensus       283 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~  361 (557)
                      ++|.+|..+|+.++....                 ..+.+..+..+++..+|.+..+|...+.++...| ++++++.++.
T Consensus        34 ~~~~~a~~~~ra~l~~~e-----------------~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~   96 (320)
T PLN02789         34 PEFREAMDYFRAVYASDE-----------------RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE   96 (320)
T ss_pred             HHHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            566667767666665443                 3345556666677777778889999999988888 6799999999


Q ss_pred             HHHhcCcCCHHHHHHHhHHHHhcCCc--hHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705          362 RALKLDKNYLSAWTLMGHEYVEMKNT--PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS  439 (557)
Q Consensus       362 ~al~~~p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  439 (557)
                      ++++.+|++..+|..++.++...|+.  ++++.++.++++.+|++..+|...+.++...|++++|+.++.++++.+|.+.
T Consensus        97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789         97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence            99999999999999999999888874  7889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHhc---CcH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhh
Q 008705          440 RLWIAMAQCYETEQL---HML----EEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAE  508 (557)
Q Consensus       440 ~~~~~l~~~~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  508 (557)
                      .+|...+.++..  .   |.+    ++++.+..+++..+|++..+|..++.++..    .++..+|...+.+++.     
T Consensus       177 sAW~~R~~vl~~--~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-----  249 (320)
T PLN02789        177 SAWNQRYFVITR--SPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-----  249 (320)
T ss_pred             hHHHHHHHHHHh--ccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-----
Confidence            999999998876  6   323    578888899999999999999999999988    4566778888888877     


Q ss_pred             hcCCcchHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHhccCC
Q 008705          509 EREGPNMVEALIFLATHCRAHG------------------RFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       509 ~~~~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~  547 (557)
                        ..|..+.++..|+.++....                  ..++|...+..+-+.+|
T Consensus       250 --~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~  304 (320)
T PLN02789        250 --KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP  304 (320)
T ss_pred             --ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence              67888999999999998643                  34678888887755443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.82  E-value=3.5e-17  Score=144.61  Aligned_cols=262  Identities=16%  Similarity=0.135  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-----cHHHHHHH
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD-----DMDMYSNV  312 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~  312 (557)
                      .|+.|.-+.-..+.++|+..|..+++.+|...++...+|..+...|..+.|+.+-+.+++ .|+...     +...++.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence            456688888899999999999999999999999999999999999999999998777665 444322     22334444


Q ss_pred             HHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----HHHHHHhHHHHhcCCc
Q 008705          313 LYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----SAWTLMGHEYVEMKNT  387 (557)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~  387 (557)
                      +...|-++.+..++..+.........+...+..+|....+|++|+..-++..++.+...     ..+..++..+....+.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            44445555555555555555555555555555555555555555555555555544432     1233344444445555


Q ss_pred             hHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705          388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-SRLWIAMAQCYETEQLHMLEEAIKCYRR  466 (557)
Q Consensus       388 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~A~~~~~~  466 (557)
                      +.|+..+.++++.+|+..++-..+|.++...|+|+.|++.++.+++.+|.. +.+...+..||..  .|+.++.+..+.+
T Consensus       197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~--lg~~~~~~~fL~~  274 (389)
T COG2956         197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ--LGKPAEGLNFLRR  274 (389)
T ss_pred             HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555544 3344555555555  5555555555555


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +.+..+. +.+...++.+-....-.+.|..++.+-+.
T Consensus       275 ~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~  310 (389)
T COG2956         275 AMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLR  310 (389)
T ss_pred             HHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence            5554433 22333344444444444555555544444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.81  E-value=6.2e-17  Score=158.96  Aligned_cols=320  Identities=13%  Similarity=-0.028  Sum_probs=234.8

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705          172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH  251 (557)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~  251 (557)
                      +|+.+..+..+|..+...|+.++|...+.++.+..|.+.......                      +..+.++...|++
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----------------------~~~a~~~~~~g~~   59 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERA----------------------HVEALSAWIAGDL   59 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHH----------------------HHHHHHHHHcCCH
Confidence            588999999999999999999999999999988888665433222                      4458888899999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705          252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM  331 (557)
Q Consensus       252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (557)
                      ++|...++++++.+|++..++.. +..+...|++..+.....+++...                              ..
T Consensus        60 ~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~------------------------------~~  108 (355)
T cd05804          60 PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW------------------------------AP  108 (355)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc------------------------------Cc
Confidence            99999999999999998876665 666666665555554444444321                              12


Q ss_pred             hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh----HH
Q 008705          332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY----RA  407 (557)
Q Consensus       332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~  407 (557)
                      ..|..+.....+|.++...|++++|+..++++++++|++..++..+|.++.+.|++++|+..+++++...|.++    ..
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            23445666778899999999999999999999999999999999999999999999999999999999887543    34


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC--HHHHHHH---HHHHhHHhcCcHHHHHHH--H-HHHHhcCCC--hHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPND--SRLWIAM---AQCYETEQLHMLEEAIKC--Y-RRAANCNDS--EAIA  477 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l---~~~~~~~~~~~~~~A~~~--~-~~al~~~p~--~~~~  477 (557)
                      |..+|.++...|++++|+..|++++...|..  .......   ...+..  .|....+..+  . .......|.  ....
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~~~w~~~~~~~~~~~~~~~~~~~  266 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL--AGHVDVGDRWEDLADYAAWHFPDHGLAFN  266 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh--cCCCChHHHHHHHHHHHHhhcCcccchHH
Confidence            6689999999999999999999998776622  2111112   122222  3332222222  1 111111111  2233


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAE--EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ....+.++...|+.++|...++.........  .........+....|.++...|++++|.+.+..++.+.
T Consensus       267 ~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         267 DLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3468888899999999999998887643220  11223456777888999999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.81  E-value=1.1e-17  Score=167.56  Aligned_cols=318  Identities=15%  Similarity=0.080  Sum_probs=208.9

Q ss_pred             cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCC
Q 008705          189 KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFS  268 (557)
Q Consensus       189 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  268 (557)
                      .++...|...|-++++++|....+|..|                         |..|....+...|.++|+++.++++.+
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~L-------------------------G~iYrd~~Dm~RA~kCf~KAFeLDatd  525 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFL-------------------------GQIYRDSDDMKRAKKCFDKAFELDATD  525 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            4457788888888888888888777655                         777777777777778888888887777


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705          269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR--VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY  346 (557)
Q Consensus       269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  346 (557)
                      ..+....+..|....+++.|..+.-.+-+..|-.  ...|...+-.+...++...+...++.++..+|.+...|..+|.+
T Consensus       526 aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeA  605 (1238)
T KOG1127|consen  526 AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEA  605 (1238)
T ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            7777777777777777777777755555555532  22334445555556677777777777777777777777777777


Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC----------------------
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD----------------------  404 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------  404 (557)
                      |...|++..|++.|.++..++|.+..+.+..+.+...+|.|.+|+..+...+......                      
T Consensus       606 Y~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g  685 (1238)
T KOG1127|consen  606 YPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG  685 (1238)
T ss_pred             HHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777666666666666666666666555444321111                      


Q ss_pred             --------------------------------------------------------------------------------
Q 008705          405 --------------------------------------------------------------------------------  404 (557)
Q Consensus       405 --------------------------------------------------------------------------------  404 (557)
                                                                                                      
T Consensus       686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~  765 (1238)
T KOG1127|consen  686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG  765 (1238)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence                                                                                            


Q ss_pred             ---------hHHHHHHHHHHHH--------hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          405 ---------YRAWYGLGQAYEM--------MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       405 ---------~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                               +..|+++|..|.+        +.+...|+.++.+++++..++...|+.+|.+ ..  .|++.-|..+|-+.
T Consensus       766 ~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg--~gnva~aQHCfIks  842 (1238)
T KOG1127|consen  766 IAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG--IGNVACAQHCFIKS  842 (1238)
T ss_pred             hHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc--cchhhhhhhhhhhh
Confidence                     2335555555443        1222356666666666666666666666665 33  46666666666666


Q ss_pred             HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          468 ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR  541 (557)
Q Consensus       468 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  541 (557)
                      +...|.....|.++|.++.+..+++.|...|.++..       .+|.+...|...+.+....|+.-++...|..
T Consensus       843 ~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS-------LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  843 RFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS-------LDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hhccccchhheeccceeEEecccHHHhhHHHHhhhh-------cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            666666666666666666666666666666666665       5666666666666666666666666666655

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.1e-18  Score=157.05  Aligned_cols=261  Identities=17%  Similarity=0.093  Sum_probs=227.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      .|..++...+|.+|+..|..+++..|++...|...+.++...|+|++|....++.++++|.........+++....++..
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999998887777776666655554


Q ss_pred             HHHHHHHH---------HHhhC---------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHH
Q 008705          321 ALSYLAHR---------VFMTD---------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV  382 (557)
Q Consensus       321 ~~~~~~~~---------~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  382 (557)
                      ++...++.         +-...         |-.......-+.++...|++++|...--..+++++.+.++++..|.++.
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y  214 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY  214 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc
Confidence            44433221         11111         1112334566888999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHhhCCCC------------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 008705          383 EMKNTPAAIDAYRRAVDINPRD------------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND----SRLWIAMA  446 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~  446 (557)
                      ..++.+.|+..|++++.++|+.            ...|..-|.-.++.|++..|.+.|..++.++|++    +..|.+++
T Consensus       215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra  294 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA  294 (486)
T ss_pred             cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence            9999999999999999999987            3457778888999999999999999999999987    45788899


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      .+...  +|+..+|+...+.++.++|....++...|.++..++++++|++.|+++++
T Consensus       295 ~v~~r--Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  295 LVNIR--LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             hhhcc--cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999  99999999999999999999999999999999999999999999999998

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.1e-14  Score=135.06  Aligned_cols=423  Identities=16%  Similarity=0.138  Sum_probs=320.4

Q ss_pred             HHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCC
Q 008705           95 LLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTV  174 (557)
Q Consensus        95 ~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~  174 (557)
                      .+|+--..++++.||..+++.++.....+..+...|...+.                  .|+.+..+..-..+....-|.
T Consensus        78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em------------------knk~vNhARNv~dRAvt~lPR  139 (677)
T KOG1915|consen   78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM------------------KNKQVNHARNVWDRAVTILPR  139 (677)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH------------------hhhhHhHHHHHHHHHHHhcch
Confidence            34777778999999999999999877777777656555432                  122333344444455555577


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh---c--------CCChhHHHHHHHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS---L--------NLNNHWMKDYFLAS  243 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~---l--------~~~~~~~~~~~la~  243 (557)
                      -...||.+-..-...||...|.++|++=++..|+ ..+|.....+-.....++.   +        +.-..|+.+   +.
T Consensus       140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wiky---ar  215 (677)
T KOG1915|consen  140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKY---AR  215 (677)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHH---HH
Confidence            7788999999999999999999999999999996 4678777776444433322   1        112344443   77


Q ss_pred             HHHHHhhhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH---HHHhcc
Q 008705          244 AYQELRMHKESLTKYEYLQGTFSFSN---YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN---VLYAKE  317 (557)
Q Consensus       244 ~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~  317 (557)
                      .-.+.|+..-|...|+++++...++.   .+....|..-..++.++.|..+|+-++..-|.+. +...+..   .--.-|
T Consensus       216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r-aeeL~k~~~~fEKqfG  294 (677)
T KOG1915|consen  216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR-AEELYKKYTAFEKQFG  294 (677)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHhc
Confidence            88889999999999999998766543   3445556666778899999999999999999762 2222222   222334


Q ss_pred             chhHHH--------HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---------HHHHHHh-H
Q 008705          318 CFSALS--------YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---------SAWTLMG-H  379 (557)
Q Consensus       318 ~~~~~~--------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~-~  379 (557)
                      +.....        ..+...+..+|.+-++|+..-.+-...|+.+.-.+.|++|+..-|...         ..|.+.+ .
T Consensus       295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly  374 (677)
T KOG1915|consen  295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY  374 (677)
T ss_pred             chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence            443332        234667888999999999999999999999999999999998776532         2233332 2


Q ss_pred             HHHhcCCchHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705          380 EYVEMKNTPAAIDAYRRAVDINPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       380 ~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  455 (557)
                      .-+...+.+.+.+.|+.++++-|..    +..|...|+...++.+...|...+-.++...|.+- .+-....+-.+  ++
T Consensus       375 eEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElq--L~  451 (677)
T KOG1915|consen  375 EELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQ--LR  451 (677)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHH--Hh
Confidence            2346789999999999999999865    77899999999999999999999999999999863 44445555666  89


Q ss_pred             cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHH-HHHHHHHHHHHcCCHHH
Q 008705          456 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE-ALIFLATHCRAHGRFEE  534 (557)
Q Consensus       456 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~  534 (557)
                      +++...++|++-+...|.+..+|...|.+-..+|+.+.|...|+-+++.      ..-+.+. .|-.........|.++.
T Consensus       452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q------p~ldmpellwkaYIdFEi~~~E~ek  525 (677)
T KOG1915|consen  452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ------PALDMPELLWKAYIDFEIEEGEFEK  525 (677)
T ss_pred             hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC------cccccHHHHHHHhhhhhhhcchHHH
Confidence            9999999999999999999999999999999999999999999999982      1122333 34445666778999999


Q ss_pred             HHHHHHHHhccCCCc
Q 008705          535 AEVYCTRLLDYTGPV  549 (557)
Q Consensus       535 A~~~~~~al~~~~~~  549 (557)
                      |..+|++.|+..+.-
T Consensus       526 aR~LYerlL~rt~h~  540 (677)
T KOG1915|consen  526 ARALYERLLDRTQHV  540 (677)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999999876543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=3.8e-16  Score=139.55  Aligned_cols=297  Identities=15%  Similarity=0.115  Sum_probs=228.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc--
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK--  316 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~--  316 (557)
                      ..+|.+.+..-.|++|+++|.+++..+|+...+...+|.||+++.-++-+.+.+.-.++..|+..-+....+..++..  
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n  234 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN  234 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc
Confidence            345888888889999999999999999999999999999999999999999999999999999887776666555432  


Q ss_pred             cc----------------hhHHHHHHHH----------HHhhC----CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc
Q 008705          317 EC----------------FSALSYLAHR----------VFMTD----KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL  366 (557)
Q Consensus       317 ~~----------------~~~~~~~~~~----------~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  366 (557)
                      ++                +..+..+++.          +++.-    ..-|++...+..+|..+++..+|+...+   ++
T Consensus       235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl  311 (557)
T KOG3785|consen  235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DL  311 (557)
T ss_pred             cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hc
Confidence            11                1122222211          11111    2357888889999999999999998776   46


Q ss_pred             CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh---hC------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705          367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD---IN------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  437 (557)
                      +|..+.-+...|.++...|+--...+.++.|-+   +-      -+.......++.+++...+|++.+.+++..-...-+
T Consensus       312 ~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N  391 (557)
T KOG3785|consen  312 DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN  391 (557)
T ss_pred             CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999999999999986655555554433   21      122344567788888899999999999888777788


Q ss_pred             CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-h
Q 008705          438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-M  515 (557)
Q Consensus       438 ~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~  515 (557)
                      +....++++.++..  .|++.+|.+.|-+.-... .+.......||+||...|+++-|...+-+.         ..|. .
T Consensus       392 dD~Fn~N~AQAk~a--tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---------~t~~e~  460 (557)
T KOG3785|consen  392 DDDFNLNLAQAKLA--TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---------NTPSER  460 (557)
T ss_pred             cchhhhHHHHHHHH--hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---------CCchhH
Confidence            88889999999999  999999999998876544 334456678999999999999998877543         2333 3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          516 VEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      ...+..+|....+.++|--|.+.|...-.++|..
T Consensus       461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  461 FSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            4455567888889999999999998888887653

>PLN02789 farnesyltranstransferase

Probab=99.80  E-value=8e-17  Score=151.25  Aligned_cols=209  Identities=13%  Similarity=0.038  Sum_probs=169.9

Q ss_pred             HHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Q 008705          184 IVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR-MHKESLTKYEYLQ  262 (557)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l  262 (557)
                      .++...+++++|+..+.++++.+|.+..+|...                         +.++..+| .+++++..+++++
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R-------------------------~~iL~~L~~~l~eeL~~~~~~i   99 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFR-------------------------RLCLEALDADLEEELDFAEDVA   99 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHH-------------------------HHHHHHcchhHHHHHHHHHHHH
Confidence            345667888899999999999999998888655                         67777777 5788899999999


Q ss_pred             hcCCCCHHHHHHHHHHHHhcccH--HHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHH
Q 008705          263 GTFSFSNYIQAQIAKAQYSLREF--EQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESC  340 (557)
Q Consensus       263 ~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (557)
                      ..+|++..+|..++.++...|+.  ++++.+++++++.+|.                                  +..+|
T Consensus       100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk----------------------------------Ny~AW  145 (320)
T PLN02789        100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK----------------------------------NYHAW  145 (320)
T ss_pred             HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc----------------------------------cHHHH
Confidence            88999888888888888777763  5667777777777665                                  55677


Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc---CCc----hHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM---KNT----PAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                      ...+.++...|++++++.++.++++.+|.+..+|..++.+....   |.+    ++++.+..+++..+|++..+|..++.
T Consensus       146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~  225 (320)
T PLN02789        146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG  225 (320)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence            77888888888899999999999999999999999998887765   333    46788888999999999999998888


Q ss_pred             HHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          414 AYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       414 ~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ++..    +++..+|+..+.+++...|.++.++..++.+|..
T Consensus       226 ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        226 LFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            8877    4556778888888888888888888888888876

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.78  E-value=9.4e-17  Score=157.15  Aligned_cols=265  Identities=17%  Similarity=0.125  Sum_probs=208.0

Q ss_pred             CChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705          231 LNNHWMKDYFLASAYQELRMHKESLTKYEYLQGT--------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR  302 (557)
Q Consensus       231 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  302 (557)
                      .|..+.....++..|...|++++|+..++.++..        .|.-......+|.+|..++++.+|+.+|++++.+....
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3444444455799999999999999999999987        44444455669999999999999999999999864321


Q ss_pred             CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc--------CCHHHH
Q 008705          303 VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--------NYLSAW  374 (557)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~  374 (557)
                      .                          -..+|....++..+|..|...|++++|..++++|+++..        .-...+
T Consensus       275 ~--------------------------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l  328 (508)
T KOG1840|consen  275 F--------------------------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL  328 (508)
T ss_pred             c--------------------------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence            1                          022333556788899999999999999999999998632        233457


Q ss_pred             HHHhHHHHhcCCchHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC--------CCC
Q 008705          375 TLMGHEYVEMKNTPAAIDAYRRAVDIN--------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ--------PND  438 (557)
Q Consensus       375 ~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~  438 (557)
                      ..++.++..++++++|+.++++++++.        +.-+..+.++|.+|..+|++.+|.++|++++.+.        +..
T Consensus       329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~  408 (508)
T KOG1840|consen  329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV  408 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence            789999999999999999999998863        2336778999999999999999999999999864        233


Q ss_pred             HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hhc
Q 008705          439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA-EER  510 (557)
Q Consensus       439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~  510 (557)
                      ...+..+|..|.+  .+++.+|.+.|.++..+       .|+....+.+||.+|..+|++++|+++.++++..-+. .+.
T Consensus       409 ~~~l~~la~~~~~--~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~  486 (508)
T KOG1840|consen  409 GKPLNQLAEAYEE--LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT  486 (508)
T ss_pred             hHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence            5578899999999  99999999999998875       3444568999999999999999999999999863332 223


Q ss_pred             CCcchHHHHHHHH
Q 008705          511 EGPNMVEALIFLA  523 (557)
Q Consensus       511 ~~~~~~~~~~~la  523 (557)
                      ..|.....-..++
T Consensus       487 ~~~~~~~~~~~~~  499 (508)
T KOG1840|consen  487 ASPTVEDEKLRLA  499 (508)
T ss_pred             CCcchhHHHHhhh
Confidence            3344444433333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.1e-14  Score=135.07  Aligned_cols=362  Identities=13%  Similarity=0.052  Sum_probs=242.2

Q ss_pred             hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705          154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN  233 (557)
Q Consensus       154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~  233 (557)
                      .+.+++++.+...+++...|+++.+..-.-.++.+.++|++|+...++-......+.                       
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-----------------------   80 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-----------------------   80 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-----------------------
Confidence            456777788888888888899999999999999999999999844443221111111                       


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                         ..|-.+.|.++.+..++|+..++   ..++.+..++...|++++++|+|++|..+|+.+++.+.++.+.... .+++
T Consensus        81 ---~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r-~nl~  153 (652)
T KOG2376|consen   81 ---FFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR-ANLL  153 (652)
T ss_pred             ---hhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH-HHHH
Confidence               01346999999999999999999   4466677789999999999999999999999999877655443222 1221


Q ss_pred             HhccchhHHHHHHHHHHhhCC-CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC--------cC--C-----HHHHHHH
Q 008705          314 YAKECFSALSYLAHRVFMTDK-YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD--------KN--Y-----LSAWTLM  377 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~--~-----~~~~~~l  377 (557)
                      ........ . +. +.....| ..-+.+++.+.++...|+|.+|++.+++++.+.        .+  .     ..+...+
T Consensus       154 a~~a~l~~-~-~~-q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl  230 (652)
T KOG2376|consen  154 AVAAALQV-Q-LL-QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL  230 (652)
T ss_pred             HHHHhhhH-H-HH-HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence            11111110 0 11 1222222 356688999999999999999999999995431        11  1     1346778


Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCChHH-------------------------------------------------H
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRA-------------------------------------------------W  408 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------~  408 (557)
                      +.++..+|+.++|...|...+..+|.|...                                                 +
T Consensus       231 ayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~  310 (652)
T KOG2376|consen  231 AYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY  310 (652)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887765110                                                 1


Q ss_pred             HHHHHHHHH----------------------------------hCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHHh
Q 008705          409 YGLGQAYEM----------------------------------MHMPLYALHYFRKSVFLQPND-SRLWIAMAQCYETEQ  453 (557)
Q Consensus       409 ~~l~~~~~~----------------------------------~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~  453 (557)
                      .+.+.....                                  ...+..|+.++....+..|.. ..+...++.+...  
T Consensus       311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is--  388 (652)
T KOG2376|consen  311 RNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS--  388 (652)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh--
Confidence            111111111                                  112344555555555555555 4456666677777  


Q ss_pred             cCcHHHHHHHHHHHH--------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705          454 LHMLEEAIKCYRRAA--------NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH  525 (557)
Q Consensus       454 ~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  525 (557)
                      +|+++.|++.+....        +.. ..|.+...+-.++...++.+.|...+..++..........+..-..+..++.+
T Consensus       389 ~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f  467 (652)
T KOG2376|consen  389 QGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF  467 (652)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence            777777777777322        221 22444445555666666666677777777665444333344455566667888


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          526 CRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       526 ~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ..+.|+-++|...+++.++.+|++..
T Consensus       468 ~lr~G~~~ea~s~leel~k~n~~d~~  493 (652)
T KOG2376|consen  468 KLRHGNEEEASSLLEELVKFNPNDTD  493 (652)
T ss_pred             HHhcCchHHHHHHHHHHHHhCCchHH
Confidence            88999999999999999999877643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.5e-13  Score=127.79  Aligned_cols=359  Identities=14%  Similarity=0.104  Sum_probs=222.5

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhc---------CCC---hhHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSL---------NLN---NHWMKDYF  240 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l---------~~~---~~~~~~~~  240 (557)
                      .-+...|..+|.--..++++..|..+|++|+..+..+...|...+.+-.....++..         .+|   ..|..+  
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY--  147 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY--  147 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH--
Confidence            334445555666666666666666666666666666666665554432222222110         011   111111  


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                       ..+-..+|+...|.++|++-++-.|+ ..+|......-.+.++.+.|..+|++.+-..|. ...+..++..-...|...
T Consensus       148 -~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~  224 (677)
T KOG1915|consen  148 -IYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVA  224 (677)
T ss_pred             -HHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHH
Confidence             34445678888888888888877774 345666666666777788888888888777764 456667777777777777


Q ss_pred             HHHHHHHHHHhhCCCChh---HHHHHHHHHhhhCchHHHHHHHHHHHhc-------------------------------
Q 008705          321 ALSYLAHRVFMTDKYRPE---SCCIIGNYYSLKGQHEKSVVYFRRALKL-------------------------------  366 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------------------  366 (557)
                      -+...+..++..-.++-.   .+...|..-..+..++.|...|+-|+..                               
T Consensus       225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv  304 (677)
T KOG1915|consen  225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV  304 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence            777777776665444222   2333444444555666666666555544                               


Q ss_pred             -------------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH---------HHHHHHH-HHHHhCChHH
Q 008705          367 -------------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR---------AWYGLGQ-AYEMMHMPLY  423 (557)
Q Consensus       367 -------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~-~~~~~~~~~~  423 (557)
                                   +|.+.++|+..-.+-...|+.+.-.+.|++|+..-|....         .|.+.+. .-....+.+.
T Consensus       305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er  384 (677)
T KOG1915|consen  305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER  384 (677)
T ss_pred             hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence                         3444455555555555556666666666666654443211         1111111 1123455566


Q ss_pred             HHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705          424 ALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK  499 (557)
Q Consensus       424 A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  499 (557)
                      +...|+.++++-|..    +.+|...|....+  +.+...|.+.+-.|+-..|.+ .++.....+-.++++++....+|+
T Consensus       385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR--q~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR--QLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             HHHHHHHHHhhcCcccchHHHHHHHHHHHHHH--HcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence            666666666665543    4566666666666  666777777777777666654 234445556677788888999999


Q ss_pred             HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       500 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      +.++       ..|++..+|...|.+...+|+.+.|...|+-|++-.
T Consensus       462 kfle-------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  462 KFLE-------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHh-------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            9888       799999999999999999999999999999998853

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=7.7e-13  Score=126.56  Aligned_cols=416  Identities=14%  Similarity=0.055  Sum_probs=271.4

Q ss_pred             chhhHHHHHHHhhhhhhHHHHHHHHhhhcC--Cchh--hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHH
Q 008705           89 EDSDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSV--FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERE  164 (557)
Q Consensus        89 ~~~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~--~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (557)
                      .+.+.+----+++..+.|++|+.+.+.-..  ....  |-.+|+.|-.+   +.+++...                    
T Consensus        45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln---k~Dealk~--------------------  101 (652)
T KOG2376|consen   45 DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN---KLDEALKT--------------------  101 (652)
T ss_pred             cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc---cHHHHHHH--------------------
Confidence            345566566677777888888866665432  2222  35566665554   33443332                    


Q ss_pred             HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHH--hhhcHH--HHhhc--CCChhHHHH
Q 008705          165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKS--LCTSID--ILNSL--NLNNHWMKD  238 (557)
Q Consensus       165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~--~~~~~~--~~~~l--~~~~~~~~~  238 (557)
                         +...++.+..++.+.|.+++++|+|++|..+|+..++.+.+..+.-....-  ......  ....+  ...+.+...
T Consensus       102 ---~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~  178 (652)
T KOG2376|consen  102 ---LKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL  178 (652)
T ss_pred             ---HhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence               223457778899999999999999999999999999877766554433221  111111  12222  334577788


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhc--------CCC-------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGT--------FSF-------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV  303 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  303 (557)
                      |+.|.++...|+|.+|++.+++++.+        +.+       -..+..+++.++..+|+..+|..+|..+++.+|.+.
T Consensus       179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999432        111       123678999999999999999999999999999887


Q ss_pred             CcHHHHHHHHHhccchhHHHH-----HHHHHHhhC----------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc
Q 008705          304 DDMDMYSNVLYAKECFSALSY-----LAHRVFMTD----------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK  368 (557)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  368 (557)
                      .......+-+...........     ..+......          .....++.+.+...+..+.-+.+.+...+.-...|
T Consensus       259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p  338 (652)
T KOG2376|consen  259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP  338 (652)
T ss_pred             hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc
Confidence            666555554443321111100     111100000          01122334455555555655665555544433444


Q ss_pred             CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCChHHHHHHHHHHH--------hcCCCCH
Q 008705          369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-YRAWYGLGQAYEMMHMPLYALHYFRKSV--------FLQPNDS  439 (557)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------~~~p~~~  439 (557)
                      ..................+.+|++.+....+.+|.+ ..+...++++...+|+++.|+..+....        +. ...|
T Consensus       339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P  417 (652)
T KOG2376|consen  339 ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP  417 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh
Confidence            443333333444444447889999999999988887 6678888999999999999999998333        22 2234


Q ss_pred             HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705          440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG  512 (557)
Q Consensus       440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (557)
                      .+...+-..+..  .++.+-|...+..++..       .+.....+..++..-.+.|+-++|...+++.++       ..
T Consensus       418 ~~V~aiv~l~~~--~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k-------~n  488 (652)
T KOG2376|consen  418 GTVGAIVALYYK--IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK-------FN  488 (652)
T ss_pred             hHHHHHHHHHHh--ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH-------hC
Confidence            455555556666  66655555555555543       333344667778888888999999999999999       68


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          513 PNMVEALIFLATHCRAHGRFEEAEVYCTR  541 (557)
Q Consensus       513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~  541 (557)
                      |++.++...+...|... +.+.|..+-++
T Consensus       489 ~~d~~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  489 PNDTDLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            99999988888777765 56677665544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=6.5e-14  Score=125.45  Aligned_cols=313  Identities=13%  Similarity=0.076  Sum_probs=200.6

Q ss_pred             HHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 008705          186 LKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTF  265 (557)
Q Consensus       186 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  265 (557)
                      +....+|..|+..++-....+....+                        ....++|.|++.+|+|++|+..|.-+.+.+
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~------------------------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~   87 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEED------------------------SLQLWIAHCYFHLGDYEEALNVYTFLMNKD   87 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhH------------------------HHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence            34567888899888877654433221                        122456999999999999999999998877


Q ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHH
Q 008705          266 SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGN  345 (557)
Q Consensus       266 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  345 (557)
                      ..+.+++..+|.|++..|.|.+|...-.++    |..+-....+-.+....++..+...+-..+..    ..+-...++.
T Consensus        88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAs  159 (557)
T KOG3785|consen   88 DAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLAS  159 (557)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHH
Confidence            778889999999999999999998776554    44443344444444444444444333222211    1133344555


Q ss_pred             HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---------------------
Q 008705          346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---------------------  404 (557)
Q Consensus       346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------------  404 (557)
                      +.+..-.|++|+..|++.+.-+|+....-..++.+|.++.-++-+-+.+.-.+...|++                     
T Consensus       160 vhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae  239 (557)
T KOG3785|consen  160 VHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE  239 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence            55555556666666666666556555555555555555555555555554444444433                     


Q ss_pred             ---------------------------------------------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705          405 ---------------------------------------------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS  439 (557)
Q Consensus       405 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  439 (557)
                                                                   +++..+|...|..+++..+|+..++   .++|..|
T Consensus       240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP  316 (557)
T KOG3785|consen  240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTP  316 (557)
T ss_pred             HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCCh
Confidence                                                         4556666677777788888877765   4567776


Q ss_pred             HHHHHHHHHHhHHhcCc-------------------------------------------HHHHHHHHHHHHhcCCChHH
Q 008705          440 RLWIAMAQCYETEQLHM-------------------------------------------LEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       440 ~~~~~l~~~~~~~~~~~-------------------------------------------~~~A~~~~~~al~~~p~~~~  476 (557)
                      .-+...|.+...  .|+                                           +++.+.++...-...-++..
T Consensus       317 ~EyilKgvv~aa--lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~  394 (557)
T KOG3785|consen  317 YEYILKGVVFAA--LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD  394 (557)
T ss_pred             HHHHHHHHHHHH--hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence            666666655554  443                                           33333333322222334555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR  541 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  541 (557)
                      ..+++|.++...|++.+|.+.|-+.-.      +.-.+......+||+||.+.|..+-|.+.+-+
T Consensus       395 Fn~N~AQAk~atgny~eaEelf~~is~------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk  453 (557)
T KOG3785|consen  395 FNLNLAQAKLATGNYVEAEELFIRISG------PEIKNKILYKSMLARCYIRNKKPQLAWDMMLK  453 (557)
T ss_pred             hhhHHHHHHHHhcChHHHHHHHhhhcC------hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence            678899999999999999998876543      11134455667899999999999999887754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.70  E-value=4.6e-15  Score=136.32  Aligned_cols=192  Identities=17%  Similarity=0.052  Sum_probs=155.7

Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH---
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR---  406 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---  406 (557)
                      ++..+..++.+|..+...|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|+++++..|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            345778899999999999999999999999999998875   57899999999999999999999999999998876   


Q ss_pred             HHHHHHHHHHHh--------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705          407 AWYGLGQAYEMM--------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL  478 (557)
Q Consensus       407 ~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  478 (557)
                      +++.+|.++...        |++++|+..|++++..+|++...+..+..+...  .+..                 ....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~--~~~~-----------------~~~~  169 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL--RNRL-----------------AGKE  169 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH--HHHH-----------------HHHH
Confidence            688899999876        788999999999999999987665444322221  1110                 1223


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705          479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  547 (557)
                      ..+|.++...|++.+|+..|+++++..+    ..|..+.+++.+|.++...|++++|..+++.+....|
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYP----DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCC----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5788899999999999999999998321    2455678999999999999999999998888766543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.69  E-value=8.8e-14  Score=138.25  Aligned_cols=303  Identities=17%  Similarity=0.087  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc-
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK-  316 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-  316 (557)
                      .++.+.++...|++++|++.+++....-.+...++-..|.++..+|++++|...|..++..+|++...+..+..++... 
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence            4567899999999999999999998888888999999999999999999999999999999999988888887777333 


Q ss_pred             ----cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHH-HHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHH
Q 008705          317 ----ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEK-SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI  391 (557)
Q Consensus       317 ----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  391 (557)
                          ........++.......|....+.. +.-.+..-.++.. +..++...+..  .-|.....+-.+|....+..-..
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence                2466777778877777765433322 2222222223433 44455555543  45556666666665433333222


Q ss_pred             HHHHHHHhh---------------CCCC--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc
Q 008705          392 DAYRRAVDI---------------NPRD--YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       392 ~~~~~al~~---------------~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  454 (557)
                      ..+...+..               .|..  ..+++.+++.|...|++++|+.+++++|...|+.++.+...|.++..  .
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh--~  241 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH--A  241 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--C
Confidence            333322211               1112  24568899999999999999999999999999999999999999999  9


Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc---chHHHHHHHHHHHHHcCC
Q 008705          455 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP---NMVEALIFLATHCRAHGR  531 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~  531 (557)
                      |++.+|..+++.+..+++.+-.+-...+..+.+.|+.++|...+......- .....+-   ...+.....|.+|.+.|+
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED-VDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC-CCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999988776510 0000001   113334457999999999


Q ss_pred             HHHHHHHHHHHhccC
Q 008705          532 FEEAEVYCTRLLDYT  546 (557)
Q Consensus       532 ~~~A~~~~~~al~~~  546 (557)
                      +..|+..|..+.+..
T Consensus       321 ~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  321 YGLALKRFHAVLKHF  335 (517)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988753

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.68  E-value=1e-15  Score=127.46  Aligned_cols=127  Identities=13%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             HHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          357 VVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       357 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      ..+|+++++++|++   +..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35778888888774   556788888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       437 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      +++.+++.+|.++..  .|++++|+..|++++...|+++..+..++.+....
T Consensus        90 ~~~~a~~~lg~~l~~--~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKM--MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            888888888888888  88888888888888888888888887777766543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.68  E-value=9.6e-15  Score=134.19  Aligned_cols=114  Identities=18%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705          172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH  251 (557)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~  251 (557)
                      .+..+..++.+|..+...|++++|+..|++++..+|.+......                      .+.+|.++...|++
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a----------------------~~~la~~~~~~~~~   86 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQA----------------------QLDLAYAYYKSGDY   86 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHH----------------------HHHHHHHHHhcCCH
Confidence            46778899999999999999999999999999999987632211                      13459999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCCCCcHH
Q 008705          252 KESLTKYEYLQGTFSFSNY---IQAQIAKAQYSL--------REFEQVEVIFEELLRNDPYRVDDMD  307 (557)
Q Consensus       252 ~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~  307 (557)
                      ++|+..|+++++.+|+++.   +++.+|.++...        |++++|+..|++++..+|.+.....
T Consensus        87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  153 (235)
T TIGR03302        87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD  153 (235)
T ss_pred             HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence            9999999999999998765   688999999876        8999999999999999998755443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.67  E-value=1.3e-13  Score=135.41  Aligned_cols=277  Identities=13%  Similarity=0.025  Sum_probs=198.9

Q ss_pred             CChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHH
Q 008705          231 LNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMD  307 (557)
Q Consensus       231 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  307 (557)
                      .|+..+.++.+|.++...|+.+.+...+.++....|.   ..+.....+.++...|++++|...++++++.+|.+.    
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----   77 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL----   77 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence            4667788888888888888888888888887776554   345667778888888888888888888888888653    


Q ss_pred             HHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705          308 MYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE  383 (557)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  383 (557)
                                                    .++.. +..+..    .+....+...+......+|....++..+|.++..
T Consensus        78 ------------------------------~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~  126 (355)
T cd05804          78 ------------------------------LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE  126 (355)
T ss_pred             ------------------------------HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH
Confidence                                          22221 222222    3444455555554445667777888899999999


Q ss_pred             cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhHHhcCcHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS----RLWIAMAQCYETEQLHMLEE  459 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~~~~~~~~  459 (557)
                      .|++++|+..++++++.+|++..++..+|.++...|++++|+.++++++...|.++    ..+..+|.++..  .|++++
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~--~G~~~~  204 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE--RGDYEA  204 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH--CCCHHH
Confidence            99999999999999999999999999999999999999999999999999887543    346689999999  999999


Q ss_pred             HHHHHHHHHhcCCC--hHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705          460 AIKCYRRAANCNDS--EAIALN---QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE  534 (557)
Q Consensus       460 A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  534 (557)
                      |+..|++++...|.  ......   .+...+...|....+..+ +.+........ ..+.........+.++...|+.++
T Consensus       205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~  282 (355)
T cd05804         205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDA  282 (355)
T ss_pred             HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHH
Confidence            99999999876662  221111   233334445544433333 22222111100 112223333468888999999999


Q ss_pred             HHHHHHHHhccC
Q 008705          535 AEVYCTRLLDYT  546 (557)
Q Consensus       535 A~~~~~~al~~~  546 (557)
                      |...++.+....
T Consensus       283 a~~~L~~l~~~~  294 (355)
T cd05804         283 LDKLLAALKGRA  294 (355)
T ss_pred             HHHHHHHHHHHH
Confidence            999998886643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.66  E-value=6.7e-13  Score=132.04  Aligned_cols=302  Identities=12%  Similarity=0.028  Sum_probs=226.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      .+++.....++...|++++|++.+++....-++.......                         +|.++..+|++++|.
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~-------------------------rA~ll~kLg~~~eA~   58 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEK-------------------------RAELLLKLGRKEEAE   58 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHH-------------------------HHHHHHHcCCHHHHH
Confidence            4677788899999999999999999877766665544433                         499999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch-hHHHHHHHHH
Q 008705          256 TKYEYLQGTFSFSNYIQAQIAKAQYSL-----REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF-SALSYLAHRV  329 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  329 (557)
                      ..|..+++.+|++...+..+..+....     .+.+.-..+|++.....|........--. ......+ ..+..++...
T Consensus        59 ~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~  137 (517)
T PF12569_consen   59 KIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQ  137 (517)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHH
Confidence            999999999999999888888887333     35777888999988888864332221111 1111122 2233333333


Q ss_pred             HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc---------------CcCC--HHHHHHHhHHHHhcCCchHHHH
Q 008705          330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL---------------DKNY--LSAWTLMGHEYVEMKNTPAAID  392 (557)
Q Consensus       330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------~p~~--~~~~~~l~~~~~~~~~~~~A~~  392 (557)
                      +  ...-|.++..+-..|....+..-....+......               .|..  ..+++.++..|-..|++++|++
T Consensus       138 l--~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~  215 (517)
T PF12569_consen  138 L--RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE  215 (517)
T ss_pred             H--hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            3  3346677777777776444433333333332211               1111  2456788999999999999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-
Q 008705          393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-  471 (557)
Q Consensus       393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-  471 (557)
                      +.+++++..|..++.+...|.++-..|++.+|...++.+-.+++.|-.+-...+..+.+  .|+.++|.+.+......+ 
T Consensus       216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR--a~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR--AGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH--CCCHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999999999999999999999999998888888999999  999999999988776544 


Q ss_pred             -CCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705          472 -DSE-------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA  507 (557)
Q Consensus       472 -p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (557)
                       |..       .+.....|.+|.+.|++..|+..|..+.+.+..
T Consensus       294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence             211       334456799999999999999999998885543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=4.5e-15  Score=123.59  Aligned_cols=128  Identities=18%  Similarity=0.086  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705          390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~  469 (557)
                      -...|+++++++|++   ++.+|.++...|++++|+.+|++++..+|.++.+|..+|.++..  .|++++|+.+|++++.
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM--LKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--HhhHHHHHHHHHHHHh
Confidence            346899999999875   66789999999999999999999999999999999999999999  9999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc
Q 008705          470 CNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH  529 (557)
Q Consensus       470 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~  529 (557)
                      ++|.++.+++++|.++...|++++|+..|+++++       ..|+++..+..++.+....
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-------~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-------MSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999       7899999998888776543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.65  E-value=3.1e-14  Score=123.50  Aligned_cols=177  Identities=18%  Similarity=0.145  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 008705          356 SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ  435 (557)
Q Consensus       356 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  435 (557)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|++.+|+..++++..+.
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            444444555556666555 5566666666666666666666555566665555556666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705          436 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM  515 (557)
Q Consensus       436 p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (557)
                      |+++++|..+|.+|.+  .|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+..       ..+.+
T Consensus       131 p~d~~~~~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-------~~~ad  201 (257)
T COG5010         131 PTDWEAWNLLGAALDQ--LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL-------SPAAD  201 (257)
T ss_pred             CCChhhhhHHHHHHHH--ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-------CCCCc
Confidence            6666666666666666  66666666666666666666666666666666666666666666666555       44445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          516 VEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       516 ~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      ..+..+++.+...+|++.+|.....+-
T Consensus       202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         202 SRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            566666666666666666665554443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.65  E-value=2.7e-15  Score=136.75  Aligned_cols=274  Identities=17%  Similarity=0.181  Sum_probs=196.6

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFS----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK  316 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  316 (557)
                      -|.-+++.|++...+..|+.+++...++    ..++.++|.+|+..++|++|+++-..=+.+...               
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~---------------   87 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL---------------   87 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH---------------
Confidence            3888899999999999999999987665    356789999999999999998875433322110               


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc------CCHHHHHHHhHHHHhcCC----
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK------NYLSAWTLMGHEYVEMKN----  386 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~----  386 (557)
                                   +...-..+.+.-.+|+.+..+|.|++|+.+..+-+.+..      ....+++++|.+|...|+    
T Consensus        88 -------------lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~  154 (639)
T KOG1130|consen   88 -------------LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL  154 (639)
T ss_pred             -------------hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC
Confidence                         000111234455688888888888888888777665432      134678888888887664    


Q ss_pred             ----------------chHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------
Q 008705          387 ----------------TPAAIDAYRRAVDINPR------DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------  438 (557)
Q Consensus       387 ----------------~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------  438 (557)
                                      ++.|+++|..-+++...      ..+++-+||..|+.+|+|+.|+..-+.-+.+....      
T Consensus       155 ~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae  234 (639)
T KOG1130|consen  155 EAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE  234 (639)
T ss_pred             CChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                            23344555444443222      14567788888999999999998887776664332      


Q ss_pred             HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705          439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG  512 (557)
Q Consensus       439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (557)
                      .+++.++|.++.-  .|+++.|+++|++.+.+    ...  .....+.||..|.-..++++|+.|+.+-+.. ..+.+..
T Consensus       235 RRA~sNlgN~hif--lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI-AqeL~Dr  311 (639)
T KOG1130|consen  235 RRAHSNLGNCHIF--LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI-AQELEDR  311 (639)
T ss_pred             HHhhcccchhhhh--hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence            3578889999998  99999999999887654    222  3456788999999999999999999887773 2222334


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      .....+++.||..+-..|..++|+.+.++.+++
T Consensus       312 iGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  312 IGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            556778888999999999999999888877664

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.63  E-value=8e-14  Score=120.95  Aligned_cols=173  Identities=17%  Similarity=0.165  Sum_probs=159.8

Q ss_pred             HHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705          328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA  407 (557)
Q Consensus       328 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  407 (557)
                      .....+|.+..+ ..++..+...|+-+.+..+..++...+|.+.......|...+..|++..|+..++++....|++.++
T Consensus        58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~  136 (257)
T COG5010          58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA  136 (257)
T ss_pred             HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence            344556667777 8899999999999999999999998899999998889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA  487 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  487 (557)
                      |..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-  .|+++.|..++..+....+.+..+..+++.+...
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L--~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~  214 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL--RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL  214 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH--cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999  9999999999999999988899999999999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 008705          488 LGRDEEAAFYYKKDLE  503 (557)
Q Consensus       488 ~g~~~~A~~~~~~al~  503 (557)
                      .|++++|...-.+-+.
T Consensus       215 ~g~~~~A~~i~~~e~~  230 (257)
T COG5010         215 QGDFREAEDIAVQELL  230 (257)
T ss_pred             cCChHHHHhhcccccc
Confidence            9999999887665443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.63  E-value=8.9e-12  Score=114.26  Aligned_cols=292  Identities=12%  Similarity=-0.029  Sum_probs=232.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHhccchh
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR-VDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~  320 (557)
                      |..-+..|+|.+|.+...+.-+..+...-.+..-+.+-.++|+++.|-.++.++-+..+++ .......+.++...++..
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~  170 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP  170 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence            6677788999999999999877777777778888899999999999999999999884433 345567788899999999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH--------HHHHHHhHHHHhcCCchHHHH
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL--------SAWTLMGHEYVEMKNTPAAID  392 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~l~~~~~~~~~~~~A~~  392 (557)
                      .+..-...+....|.++++......+|...|++.....+..+.-+..--+.        .+|..+-.-....+..+.-..
T Consensus       171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~  250 (400)
T COG3071         171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT  250 (400)
T ss_pred             hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            999999999999999999999999999999999999998887766542221        122222222222222333233


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705          393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p  472 (557)
                      +++..-..-.+++.....++.-+...|++++|.+....+++..-+ +.....++.  ..  .+++..=++..++.++..|
T Consensus       251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~--l~--~~d~~~l~k~~e~~l~~h~  325 (400)
T COG3071         251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIPR--LR--PGDPEPLIKAAEKWLKQHP  325 (400)
T ss_pred             HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHhh--cC--CCCchHHHHHHHHHHHhCC
Confidence            444443444456788888999999999999999999999987644 332222222  23  6888999999999999999


Q ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          473 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      +++..+..||.++.+.+.+.+|..+|+.+++       ..| +...+..+|..+.+.|+..+|.+.++.++...
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-------~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALK-------LRP-SASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-------cCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998       344 56678999999999999999999999998653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.62  E-value=8.7e-14  Score=136.17  Aligned_cols=225  Identities=18%  Similarity=0.256  Sum_probs=204.2

Q ss_pred             CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHH
Q 008705          230 NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMY  309 (557)
Q Consensus       230 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  309 (557)
                      ..|+.|.....++..+...|-...|+.+|++.        +.|-....||...|+..+|..+..+-++ .|.++-.+..+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L  463 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL  463 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence            57899999999999999999999999999987        5678889999999999999999999999 56667778888


Q ss_pred             HHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH
Q 008705          310 SNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA  389 (557)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  389 (557)
                      +.+.....-++++..+.+..      +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.
T Consensus       464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            88887777777777776653      344667778888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705          390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~  469 (557)
                      |.+.|.+++.++|++..+|.+++.+|.+.++-.+|...++++++.+-.++.+|.+.-.+...  .|.+++|++.+.+.+.
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd--vge~eda~~A~~rll~  615 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD--VGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh--cccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998999999999999999  9999999999999987


Q ss_pred             cC
Q 008705          470 CN  471 (557)
Q Consensus       470 ~~  471 (557)
                      +.
T Consensus       616 ~~  617 (777)
T KOG1128|consen  616 LR  617 (777)
T ss_pred             hh
Confidence            63

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.62  E-value=4.1e-14  Score=124.36  Aligned_cols=149  Identities=19%  Similarity=0.212  Sum_probs=124.4

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      -+-.|+..|+++......++..  +|..         -+...++.++++..+++++..+|++...|..+|.+|...|+++
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence            3556888999888654442221  1211         1223778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHH-hHHhcCc--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705          423 YALHYFRKSVFLQPNDSRLWIAMAQCY-ETEQLHM--LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK  499 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  499 (557)
                      +|+..|++++++.|+++.++..+|.++ ..  .|+  +++|...++++++.+|+++.+++.+|.++...|++++|+.+++
T Consensus        91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~--~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         91 NALLAYRQALQLRGENAELYAALATVLYYQ--AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999975 56  677  5999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 008705          500 KDLER  504 (557)
Q Consensus       500 ~al~~  504 (557)
                      ++++.
T Consensus       169 ~aL~l  173 (198)
T PRK10370        169 KVLDL  173 (198)
T ss_pred             HHHhh
Confidence            99984

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.62  E-value=1.3e-13  Score=142.98  Aligned_cols=266  Identities=12%  Similarity=0.095  Sum_probs=205.2

Q ss_pred             ccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 008705          204 NSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR  283 (557)
Q Consensus       204 ~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  283 (557)
                      ..+|.+..+|..|                         +..+...+++++|+..++..++.+|+....++.+|.++++.+
T Consensus        25 ~~~p~n~~a~~~L-------------------------i~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~   79 (906)
T PRK14720         25 NYSLSKFKELDDL-------------------------IDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRR   79 (906)
T ss_pred             cCCcchHHHHHHH-------------------------HHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc
Confidence            4567778878776                         888889999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHH
Q 008705          284 EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA  363 (557)
Q Consensus       284 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  363 (557)
                      ++.++...  .++...+.+..              + .+...+...+...+.+..+++.+|.||-..|++++|...|+++
T Consensus        80 ~~~~~~lv--~~l~~~~~~~~--------------~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~  142 (906)
T PRK14720         80 PLNDSNLL--NLIDSFSQNLK--------------W-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL  142 (906)
T ss_pred             chhhhhhh--hhhhhcccccc--------------h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            99888877  77776665432              2 1222222233335666778999999999999999999999999


Q ss_pred             HhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH-
Q 008705          364 LKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW-  442 (557)
Q Consensus       364 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~-  442 (557)
                      ++.+|+++.+..++|..|... +.++|+.++.+|+..              +...+++..+..+..+.+..+|.+.+.+ 
T Consensus       143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~  207 (906)
T PRK14720        143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFL  207 (906)
T ss_pred             HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHH
Confidence            999999999999999999999 999999999999876              5666788888888888888888875542 


Q ss_pred             -------------------HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          443 -------------------IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       443 -------------------~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                                         .-+-.+|..  .+++++++.+++.+++.+|.+..+...++.+|.  +.|.. ...|+..++
T Consensus       208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~--~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~  282 (906)
T PRK14720        208 RIERKVLGHREFTRLVGLLEDLYEPYKA--LEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK  282 (906)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhh--hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence                               222266677  888999999999999999998888888888887  44443 555666555


Q ss_pred             HHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          504 RMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      ..                  .+--.-.++..|+.-|++-+.+++.+
T Consensus       283 ~s------------------~l~~~~~~~~~~i~~fek~i~f~~G~  310 (906)
T PRK14720        283 MS------------------DIGNNRKPVKDCIADFEKNIVFDTGN  310 (906)
T ss_pred             Hh------------------ccccCCccHHHHHHHHHHHeeecCCC
Confidence            21                  11111134567777777777666443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=3.6e-12  Score=109.57  Aligned_cols=183  Identities=15%  Similarity=0.133  Sum_probs=128.9

Q ss_pred             ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705          232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN  311 (557)
Q Consensus       232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  311 (557)
                      ++.|...-.+..+....|+.+-|..+++++...+|++..+....|..+...|++++|+++|+..++.+|.+.......  
T Consensus        49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK--  126 (289)
T KOG3060|consen   49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK--  126 (289)
T ss_pred             chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH--
Confidence            344444444577778889999999999999999999999999999999999999999999999999999864433322  


Q ss_pred             HHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHH
Q 008705          312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI  391 (557)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  391 (557)
                                                      --+...+|+.-+|++.+..-++..+.+.++|..++.+|+..|+|++|.
T Consensus       127 --------------------------------lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~  174 (289)
T KOG3060|consen  127 --------------------------------LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAA  174 (289)
T ss_pred             --------------------------------HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence                                            223334555566666666666666666666666666666666666666


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          392 DAYRRAVDINPRDYRAWYGLGQAYEMMH---MPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      -+|++.+-+.|.++..+..+|.+++.+|   +..-|.++|.++++++|.+...++.+-.+
T Consensus       175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            6666666666666666666666665554   34456666666666666655555544333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=9.2e-14  Score=122.13  Aligned_cols=126  Identities=14%  Similarity=0.202  Sum_probs=118.9

Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhCC--hHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY-EMMHM--PLYAL  425 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~--~~~A~  425 (557)
                      ..++.++++..++++++.+|++...|..+|.++...|++++|+..|++++.++|++..++..+|.++ ...|+  +++|.
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999999999974 67787  59999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      ..++++++.+|+++.++..+|.++..  .|++++|+.+|+++++..|.+..
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~--~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFM--QADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999999999  99999999999999999887543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.60  E-value=5.6e-14  Score=128.30  Aligned_cols=303  Identities=18%  Similarity=0.157  Sum_probs=211.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705          179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY  258 (557)
Q Consensus       179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~  258 (557)
                      +-+-|.-+++.|+....+..|+.+++....+...+..+                     +..+|.+|+.+++|.+|+++-
T Consensus        20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAI---------------------YsQLGNAyfyL~DY~kAl~yH   78 (639)
T KOG1130|consen   20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAI---------------------YSQLGNAYFYLKDYEKALKYH   78 (639)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHH---------------------HHHhcchhhhHhhHHHHHhhh
Confidence            45668889999999999999999999888776544332                     223699999999999999864


Q ss_pred             HHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705          259 EYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT  332 (557)
Q Consensus       259 ~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (557)
                      ..=+.+      .-.....--.+|..+...|.|++|+.+..+-+.+...-.                       .++   
T Consensus        79 ~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg-----------------------Drv---  132 (639)
T KOG1130|consen   79 THDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG-----------------------DRV---  132 (639)
T ss_pred             hhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh-----------------------HHH---
Confidence            432221      122334456788889999999999998887765432110                       000   


Q ss_pred             CCCChhHHHHHHHHHhhhCc--------------------hHHHHHHHHHHHhcCcC------CHHHHHHHhHHHHhcCC
Q 008705          333 DKYRPESCCIIGNYYSLKGQ--------------------HEKSVVYFRRALKLDKN------YLSAWTLMGHEYVEMKN  386 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~  386 (557)
                        ....+++.+|++|...|+                    ++.|.++|..-+++...      ...++-++|..|+-+|+
T Consensus       133 --~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGd  210 (639)
T KOG1130|consen  133 --LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGD  210 (639)
T ss_pred             --hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeecc
Confidence              023445556666554443                    34566666665555332      23456788899999999


Q ss_pred             chHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHhHHhc
Q 008705          387 TPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ----P--NDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       387 ~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p--~~~~~~~~l~~~~~~~~~  454 (557)
                      |+.|+..-+.-+.+....      -+++.++|.++.-+|+++.|+++|++.+.+.    .  ..+...+.+|..|.-  .
T Consensus       211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl--l  288 (639)
T KOG1130|consen  211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL--L  288 (639)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH--H
Confidence            999998888777654322      5678899999999999999999999876542    2  235577889999998  9


Q ss_pred             CcHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705          455 HMLEEAIKCYRRAANCND------SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA  528 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  528 (557)
                      .++++|+.++.+-+.+..      ....+++.||..+...|..++|+.+.++.++.. ...........+..++...-..
T Consensus       289 ~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s-~ev~D~sgelTar~Nlsdl~~~  367 (639)
T KOG1130|consen  289 KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS-LEVNDTSGELTARDNLSDLILE  367 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHhCCcchhhhhhhhhHHHHHH
Confidence            999999999988776532      235588999999999999999999988888732 2222222244556666666665


Q ss_pred             cCCHH
Q 008705          529 HGRFE  533 (557)
Q Consensus       529 ~g~~~  533 (557)
                      .|..+
T Consensus       368 lG~~d  372 (639)
T KOG1130|consen  368 LGQED  372 (639)
T ss_pred             hCCCc
Confidence            55433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=2e-11  Score=111.94  Aligned_cols=294  Identities=13%  Similarity=0.044  Sum_probs=154.2

Q ss_pred             hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705          154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN  233 (557)
Q Consensus       154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~  233 (557)
                      ..+++..+++.+.+..+..+.-...+..-+...-+.|+++.|-.++.++-+..++..-                      
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l----------------------  153 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL----------------------  153 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH----------------------
Confidence            3455666666665543333333333333445556667777777777766665333221                      


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                        ......+.+....|+++.|.....++++..|.++.++....++|...|++.....+..++.+..--+.+-...+-+  
T Consensus       154 --~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~--  229 (400)
T COG3071         154 --AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ--  229 (400)
T ss_pred             --HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH--
Confidence              1112346666677777777777777777777777777777777777777777777766666544322211111110  


Q ss_pred             HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHH
Q 008705          314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA  393 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  393 (557)
                                              .+|..+-+-....+..+.-..+++..-..-.+++.....++.-+...|+.++|.+.
T Consensus       230 ------------------------~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~  285 (400)
T COG3071         230 ------------------------QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI  285 (400)
T ss_pred             ------------------------HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence                                    01111100011111111111233322222233445555555556666666666666


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                      .+.+++..-+. .....  .-...-+++..=++..++.++..|+++..+..+|..+.+  .+.+.+|..+|+.+++..|+
T Consensus       286 i~~~Lk~~~D~-~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k--~~~w~kA~~~leaAl~~~~s  360 (400)
T COG3071         286 IEDALKRQWDP-RLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK--NKLWGKASEALEAALKLRPS  360 (400)
T ss_pred             HHHHHHhccCh-hHHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH--hhHHHHHHHHHHHHHhcCCC
Confidence            66666544322 21111  112234555566666666666666666666666666666  66666666666666665544


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          474 EAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                       ...+..+|.++.++|+..+|.+.+++++.
T Consensus       361 -~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         361 -ASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             -hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence             34455566666666666666666666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=1.4e-12  Score=111.95  Aligned_cols=155  Identities=17%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                      ....|+.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++
T Consensus        62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk  141 (289)
T KOG3060|consen   62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK  141 (289)
T ss_pred             HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence            33445555555555554444455555555555555555555555555555555555555554444444444555555555


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 008705          427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG---RDEEAAFYYKKDLE  503 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~  503 (557)
                      .+...++..+.|.++|..++.+|..  .|+|++|.-|+++.+-+.|.++..+..+|.+++-+|   +.+-|.++|.++++
T Consensus       142 ~ln~YL~~F~~D~EAW~eLaeiY~~--~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  142 ELNEYLDKFMNDQEAWHELAEIYLS--EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555  555555555555555555555555555555544443   34445555555555

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.57  E-value=2.9e-11  Score=133.95  Aligned_cols=327  Identities=12%  Similarity=0.003  Sum_probs=238.0

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC----HHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN----WNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL  248 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~  248 (557)
                      ..++......+.++...|++++|...+..+....+..    .....                    ......++.++...
T Consensus       406 ~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~--------------------~~~~~~~a~~~~~~  465 (903)
T PRK04841        406 LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ--------------------AEFNALRAQVAIND  465 (903)
T ss_pred             hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH--------------------HHHHHHHHHHHHhC
Confidence            3456677888999999999999999999886643221    10010                    01122357888899


Q ss_pred             hhhHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705          249 RMHKESLTKYEYLQGTFSFSN-----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS  323 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  323 (557)
                      |++++|...+++++...+...     .+...+|.++...|++++|...+++++...........                
T Consensus       466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~----------------  529 (903)
T PRK04841        466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY----------------  529 (903)
T ss_pred             CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH----------------
Confidence            999999999999988544422     34567888899999999999999999876443211000                


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--------CHHHHHHHhHHHHhcCCchHHHHHHH
Q 008705          324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--------YLSAWTLMGHEYVEMKNTPAAIDAYR  395 (557)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~  395 (557)
                                  ...+...+|.++...|++++|...+++++.....        ....+..+|.++...|++++|...++
T Consensus       530 ------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  597 (903)
T PRK04841        530 ------------ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR  597 (903)
T ss_pred             ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                        1234567889999999999999999998876221        12345678889999999999999999


Q ss_pred             HHHhhCCC-----ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHH----HHHHHHhHHhcCcHHHHHHH
Q 008705          396 RAVDINPR-----DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWI----AMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       396 ~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~----~l~~~~~~~~~~~~~~A~~~  463 (557)
                      +++.....     ...++..+|.++...|++++|...+.++..+.+..   .....    .....+..  .|+.+.|...
T Consensus       598 ~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~  675 (903)
T PRK04841        598 KGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM--TGDKEAAANW  675 (903)
T ss_pred             HhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH--CCCHHHHHHH
Confidence            99875332     24456678999999999999999999997653321   11111    12244455  7899999999


Q ss_pred             HHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          464 YRRAANCNDSEA----IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC  539 (557)
Q Consensus       464 ~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  539 (557)
                      +.......+...    ..+..++.++...|++++|...+++++..... .+.......++..+|.++...|+.++|...+
T Consensus       676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~-~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L  754 (903)
T PRK04841        676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS-LRLMSDLNRNLILLNQLYWQQGRKSEAQRVL  754 (903)
T ss_pred             HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            877655332222    23567899999999999999999999985333 2233456778899999999999999999999


Q ss_pred             HHHhccCCCch
Q 008705          540 TRLLDYTGPVS  550 (557)
Q Consensus       540 ~~al~~~~~~~  550 (557)
                      .+++++..+..
T Consensus       755 ~~Al~la~~~g  765 (903)
T PRK04841        755 LEALKLANRTG  765 (903)
T ss_pred             HHHHHHhCccc
Confidence            99999865443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=8.7e-13  Score=115.66  Aligned_cols=186  Identities=13%  Similarity=0.093  Sum_probs=115.4

Q ss_pred             HhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705          187 KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS  266 (557)
Q Consensus       187 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  266 (557)
                      .+..+|..||+++..-.+..|.+..+...|                         |.||+...++..|..+|+++-...|
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlL-------------------------gyCYY~~Q~f~~AA~CYeQL~ql~P   75 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLL-------------------------GYCYYRLQEFALAAECYEQLGQLHP   75 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            455566777777777666666665555444                         7777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705          267 FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY  346 (557)
Q Consensus       267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  346 (557)
                      ......+..|..+++.+.+.+|+.....+...+.-....+..-+.+.+..+++..+..+.++..  ..+.+.+....|.+
T Consensus        76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCl  153 (459)
T KOG4340|consen   76 ELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCL  153 (459)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchhe
Confidence            6666666667777777777777666655544322222333444555555666655555544421  11345556666666


Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      .++.|+++.|++-|+.+++...-.+-.-++++.++++.|++..|+++..+.++
T Consensus       154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            66777777777777777666666666666666666777777777666655554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.56  E-value=2.6e-13  Score=132.92  Aligned_cols=222  Identities=20%  Similarity=0.235  Sum_probs=192.5

Q ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705          265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG  344 (557)
Q Consensus       265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  344 (557)
                      .|........++..+...|-...|+.+|++.-.        |.....+|...|+..++..+..+.++ .|.++..|+.+|
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erlem--------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG  464 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM--------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG  464 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH--------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence            344556678899999999999999999998744        44566778888888888888888777 677888999998


Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA  424 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  424 (557)
                      ++.....-|++|.++.+..      +..+...+|......++|+++.++++..++++|-....|+++|.+..+.++++.|
T Consensus       465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            8887777777777766543      3446777888888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          425 LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       425 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ..+|.+++.+.|++..+|++++..|..  .++..+|...++++++.+-.+..+|.+.-.+....|.+++|++.+.+.+.
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~--~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIR--LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHH--HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999  99999999999999999988888999999999999999999999999887

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.55  E-value=1.9e-10  Score=111.35  Aligned_cols=408  Identities=13%  Similarity=0.091  Sum_probs=220.8

Q ss_pred             HHHHHhhhhhhHHHHHHHHhhhcCC---chhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh----
Q 008705           95 LLAKSYFDCREYRRAAHVLRDQTGR---RSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST----  167 (557)
Q Consensus        95 ~la~~~~~~~~y~~A~~~l~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----  167 (557)
                      .||.-|++.|.|++|..+|++.+..   ...|-..+-.|..-+........++....+......-+++--...++.    
T Consensus       253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r  332 (835)
T KOG2047|consen  253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR  332 (835)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence            4599999999999999999998752   233444443344333222222222110011111111112211112211    


Q ss_pred             --------hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhc-cCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHH
Q 008705          168 --------SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVN-SYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD  238 (557)
Q Consensus       168 --------~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  238 (557)
                              ++..+|.+..-|..+-.  ...|+..+-+..|..|++ .+|.-...                    +.-...
T Consensus       333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~G--------------------s~~~Lw  390 (835)
T KOG2047|consen  333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVG--------------------SPGTLW  390 (835)
T ss_pred             cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCC--------------------ChhhHH
Confidence                    23345666666655443  346677777777777764 44542210                    000111


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcC-CCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTF-SFS---NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY  314 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  314 (557)
                      .-.|..|...|+.+.|..+|+++.... +.-   ..+|..-|..-....+++.|+.+.+++...... +. .     .++
T Consensus       391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~-~~-~-----~~y  463 (835)
T KOG2047|consen  391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN-PE-L-----EYY  463 (835)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc-hh-h-----hhh
Confidence            223888888889999999999887753 322   456777788888888888888888888764322 11 0     000


Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY  394 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  394 (557)
                      ..+.  ....-++       .+..+|...+.+....|-++.....|++.+.+.--.+....+.|..+.+..-+++|.+.|
T Consensus       464 d~~~--pvQ~rlh-------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y  534 (835)
T KOG2047|consen  464 DNSE--PVQARLH-------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY  534 (835)
T ss_pred             cCCC--cHHHHHH-------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            0000  0000011       134556666666666777777777777777766666666667777666666777777777


Q ss_pred             HHHHhhC--CCChHHHHHHHH---HHHHhCChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          395 RRAVDIN--PRDYRAWYGLGQ---AYEMMHMPLYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       395 ~~al~~~--p~~~~~~~~l~~---~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      ++.+.+.  |.-.++|...-.   .-..-...+.|..+|+++++..|...  .++...+..-..  -|.-..|+..|++|
T Consensus       535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe--~GLar~amsiyera  612 (835)
T KOG2047|consen  535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE--HGLARHAMSIYERA  612 (835)
T ss_pred             HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence            7776654  333444433221   12223356667777777777665321  244445555555  66667777777776


Q ss_pred             HhcCCChHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          468 ANCNDSEAIALNQLAKLHH-----ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       468 l~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      -..-+..  -.+.+=.+|.     .-| .......|+++++.+     .+..........|....+.|..+.|...|.-+
T Consensus       613 t~~v~~a--~~l~myni~I~kaae~yG-v~~TR~iYekaIe~L-----p~~~~r~mclrFAdlEtklGEidRARaIya~~  684 (835)
T KOG2047|consen  613 TSAVKEA--QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESL-----PDSKAREMCLRFADLETKLGEIDRARAIYAHG  684 (835)
T ss_pred             HhcCCHH--HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhC-----ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence            5433221  1111111111     111 233455666666631     11223345555666777777777777777776


Q ss_pred             hccCCCch
Q 008705          543 LDYTGPVS  550 (557)
Q Consensus       543 l~~~~~~~  550 (557)
                      -++.+|..
T Consensus       685 sq~~dPr~  692 (835)
T KOG2047|consen  685 SQICDPRV  692 (835)
T ss_pred             hhcCCCcC
Confidence            66655543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.53  E-value=1.3e-12  Score=135.62  Aligned_cols=225  Identities=14%  Similarity=0.096  Sum_probs=193.0

Q ss_pred             hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH
Q 008705          263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI  342 (557)
Q Consensus       263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (557)
                      ...|.+..++..++..+...+++++|+..++..++..|+....+...+.++...+....+..+                .
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~   88 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------N   88 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------h
Confidence            357889999999999999999999999999999999999999999999988877775554333                3


Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      ++.......++ .++.++...+...+.+..+++.+|.+|-.+|+.++|...|+++++.+|+++.+..++|..|... +.+
T Consensus        89 ~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         89 LIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence            45555555666 6777777777778888899999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH--------------------HHHHH
Q 008705          423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA--------------------LNQLA  482 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------~~~la  482 (557)
                      +|+.++.+|+..              +..  .+++.++..++.+.+..+|.+...                    +.-+-
T Consensus       167 KA~~m~~KAV~~--------------~i~--~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~  230 (906)
T PRK14720        167 KAITYLKKAIYR--------------FIK--KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY  230 (906)
T ss_pred             HHHHHHHHHHHH--------------HHh--hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            999999999976              555  778889999999998888876543                    22223


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705          483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA  528 (557)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  528 (557)
                      ..|...+++++++.+++.+++       ..|.+..+...++.+|..
T Consensus       231 ~~y~~~~~~~~~i~iLK~iL~-------~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        231 EPYKALEDWDEVIYILKKILE-------HDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHhhhhhhhHHHHHHHHHHh-------cCCcchhhHHHHHHHHHH
Confidence            678888899999999999999       789999999999999983

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.52  E-value=2.2e-12  Score=133.27  Aligned_cols=139  Identities=10%  Similarity=0.004  Sum_probs=124.8

Q ss_pred             HhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 008705          364 LKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI  443 (557)
Q Consensus       364 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  443 (557)
                      ....|.+..++.++|.+....|.+++|...++.++++.|++..++..++.++.+++++++|+..+++++...|+++..++
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            34467788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          444 AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       444 ~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      .+|.++..  .|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++.
T Consensus       159 ~~a~~l~~--~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        159 LEAKSWDE--IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHH--hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999998  999999999999999888888899999999999999999999999999884

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.52  E-value=2.2e-12  Score=133.25  Aligned_cols=195  Identities=16%  Similarity=0.086  Sum_probs=159.7

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHH-HHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVY-FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      .|.....+-......|+.++|-.- ..++-+       +...-|.+.    ...+++.-........|.+..++..||.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~La~i   95 (694)
T PRK15179         27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------VLERHAAVH----KPAAALPELLDYVRRYPHTELFQVLVARA   95 (694)
T ss_pred             CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------HHHHhhhhc----chHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence            444555555566666666665432 222211       111122222    23334444444455678899999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      ....|.+++|...++.++++.|++..++..++.++.+  .+++++|+..+++++..+|+++.+++.+|.++.+.|++++|
T Consensus        96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~--~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A  173 (694)
T PRK15179         96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR--QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQA  173 (694)
T ss_pred             HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHH
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      ..+|++++.       ..|+.+.++..+|.++...|+.++|...|+++++...+..
T Consensus       174 ~~~y~~~~~-------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        174 DACFERLSR-------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            999999998       6899999999999999999999999999999999876544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.52  E-value=3.7e-13  Score=125.07  Aligned_cols=258  Identities=12%  Similarity=0.054  Sum_probs=186.9

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      ..-++-.|+|..++..++ .....+. .......+.+++..+|+++.++.-...   ..+....+...++..+...++.+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence            556777899999997777 3233332 455678889999999998866544322   22333444555655554434444


Q ss_pred             HHHHHHHHHHhhC--CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          321 ALSYLAHRVFMTD--KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       321 ~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                      ....-+...+...  +.++.+....|.++...|++++|++.+.+.     .+.+.......+++.+++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444443333222  234556677788999999999999888754     567888888999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHhC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          399 DINPRDYRAWYGLGQAYEMMH--MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       399 ~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      +.+.+..-+....+++....|  .+.+|...|++.....+.++..++.++.++..  +|++++|...+++++..+|+++.
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~--~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ--LGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH--CT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhccCCHH
Confidence            888776666666666666666  69999999999988888899999999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhhhcCCcchHH
Q 008705          477 ALNQLAKLHHALGRD-EEAAFYYKKDLERMEAEEREGPNMVE  517 (557)
Q Consensus       477 ~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~  517 (557)
                      ++.+++.+....|+. +.+.+++.+...       ..|+++.
T Consensus       237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~-------~~p~h~~  271 (290)
T PF04733_consen  237 TLANLIVCSLHLGKPTEAAERYLSQLKQ-------SNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHCHH-------HTTTSHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHH-------hCCCChH
Confidence            999999999999998 556667766655       4676554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.51  E-value=6.2e-13  Score=110.57  Aligned_cols=117  Identities=20%  Similarity=0.292  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705          358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       358 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  437 (557)
                      ..|++++..+|++..+.+.+|..+...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.++++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       438 ~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      ++..++.+|.++..  .|++++|+..|+++++.+|++..
T Consensus        84 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 DPRPYFHAAECLLA--LGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhccccch
Confidence            88888888888888  88888888888888888877655

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.51  E-value=9.3e-10  Score=106.68  Aligned_cols=392  Identities=16%  Similarity=0.136  Sum_probs=260.3

Q ss_pred             hhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhh-------cCCCCChhHHHHHHHHHHhcCChH-
Q 008705          122 VFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSW-------KNGTVDPFGLYLYGIVLKDKGNEN-  193 (557)
Q Consensus       122 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~g~~~~~~g~~~-  193 (557)
                      .-++.|.+|+.-.....++.++.+...+       .+.++.+.+...+       +.++.+-..|..+-....+.-+.- 
T Consensus       156 ts~rvyrRYLk~~P~~~eeyie~L~~~d-------~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~  228 (835)
T KOG2047|consen  156 TSIRVYRRYLKVAPEAREEYIEYLAKSD-------RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ  228 (835)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcc-------chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc
Confidence            4567788888887777777776643333       3344444444432       334555555555555544433221 


Q ss_pred             --HHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC---CC
Q 008705          194 --LARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS---FS  268 (557)
Q Consensus       194 --~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~  268 (557)
                        .--.+++..+...|+.+..                        ....+|..|.+.|.+++|...|++++..--   +.
T Consensus       229 slnvdaiiR~gi~rftDq~g~------------------------Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF  284 (835)
T KOG2047|consen  229 SLNVDAIIRGGIRRFTDQLGF------------------------LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF  284 (835)
T ss_pred             ccCHHHHHHhhcccCcHHHHH------------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH
Confidence              1223445555555554431                        122358888999999999999888876422   21


Q ss_pred             HHH-----HHHHHHHHHhcc-------------cHHHHHHHHHHHHHh------------CCCCCCcHHHHHHHHHhccc
Q 008705          269 NYI-----QAQIAKAQYSLR-------------EFEQVEVIFEELLRN------------DPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       269 ~~~-----~~~la~~~~~~g-------------~~~~A~~~~~~~l~~------------~p~~~~~~~~~~~~~~~~~~  318 (557)
                      ..+     .+.-..+...++             +.+-....|+.++..            +|++.+.|....  -...++
T Consensus       285 t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~  362 (835)
T KOG2047|consen  285 TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGN  362 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCC
Confidence            111     111111111111             233344555555544            444444333322  223344


Q ss_pred             hhHHHHHHHH-HHhhCCCC-----hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC----HHHHHHHhHHHHhcCCch
Q 008705          319 FSALSYLAHR-VFMTDKYR-----PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTLMGHEYVEMKNTP  388 (557)
Q Consensus       319 ~~~~~~~~~~-~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~  388 (557)
                      ..+....+.. +...+|..     ...|+..|..|...|+.+.|...|+++++.+-..    ..+|...|..-+...+++
T Consensus       363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~  442 (835)
T KOG2047|consen  363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE  442 (835)
T ss_pred             hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence            4444444444 44456653     3578999999999999999999999999876332    567889999999999999


Q ss_pred             HHHHHHHHHHhhCCC------------------ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          389 AAIDAYRRAVDINPR------------------DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       389 ~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      .|+++.++|...-..                  +..+|...+......|-++.....|++.+.+.--.|.+..+.|..+.
T Consensus       443 ~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE  522 (835)
T KOG2047|consen  443 AALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE  522 (835)
T ss_pred             HHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999998765322                  25678888999999999999999999999999899999999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhhhcCCcchHH-HHHHHHH
Q 008705          451 TEQLHMLEEAIKCYRRAANCN--DSEAIALNQLAKLHH---ALGRDEEAAFYYKKDLERMEAEEREGPNMVE-ALIFLAT  524 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~la~  524 (557)
                      .  ..-++++.+.|++.+.+.  |...++|...-..+.   .-...+.|...|+++++.      ..|.++. +++..|.
T Consensus       523 e--h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~------Cpp~~aKtiyLlYA~  594 (835)
T KOG2047|consen  523 E--HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG------CPPEHAKTIYLLYAK  594 (835)
T ss_pred             h--hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHH
Confidence            9  999999999999999885  455555554333322   234789999999999993      4455554 5566788


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705          525 HCRAHGRFEEAEVYCTRLLDYTGPVSFTHL  554 (557)
Q Consensus       525 ~~~~~g~~~~A~~~~~~al~~~~~~~~~a~  554 (557)
                      ...+.|--..|+..|+++...-++...-.+
T Consensus       595 lEEe~GLar~amsiyerat~~v~~a~~l~m  624 (835)
T KOG2047|consen  595 LEEEHGLARHAMSIYERATSAVKEAQRLDM  624 (835)
T ss_pred             HHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            888899999999999998876555444333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=1.4e-12  Score=108.41  Aligned_cols=118  Identities=23%  Similarity=0.266  Sum_probs=112.0

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      +.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++..  .|++++|+.++++++..+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM--LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence            468899999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHH
Q 008705          472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA  518 (557)
Q Consensus       472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  518 (557)
                      |.++..++.+|.++...|++++|+..|+++++       ..|++...
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~  121 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIE-------ICGENPEY  121 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hccccchH
Confidence            99999999999999999999999999999999       56766553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.1e-12  Score=116.05  Aligned_cols=114  Identities=19%  Similarity=0.231  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      +.+-.-|+-....++|++|+..|.+|++++|+++..|.+.+.+|.++|.++.|++.++.++.++|...++|..||.+|..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34444555566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      +|++++|+..|++++.++|++...+.+|..+-..
T Consensus       162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            6666666666666666666666666555555554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.46  E-value=3e-12  Score=103.99  Aligned_cols=106  Identities=16%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             HhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705          364 LKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW  442 (557)
Q Consensus       364 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  442 (557)
                      ..+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|++++.+
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            3456 677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          443 IAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      ++.|.|+..  .|+.+.|.+.|+.++...
T Consensus       107 ~~ag~c~L~--lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        107 WAAAECYLA--CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHHHHh
Confidence            999999999  999999999999988875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=2.2e-12  Score=114.24  Aligned_cols=119  Identities=18%  Similarity=0.288  Sum_probs=109.4

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      +-+-.-|.-+++.++|.+|+..|.+||+++|+++..|.+.+.+|.++|+++.|++.++.++.++|....+|..||.+|..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE  492 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  492 (557)
                        +|++++|++.|++++.++|++.....+|..+-.+++...
T Consensus       162 --~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  162 --LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             --cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence              999999999999999999999999999988888877766

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.43  E-value=6.7e-12  Score=116.71  Aligned_cols=232  Identities=16%  Similarity=0.098  Sum_probs=137.1

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhh
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSW  169 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~  169 (557)
                      .+..+.++++|+..|+|+..+.-+....++....++.++.|+.....+.....+                     ++...
T Consensus        35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~---------------------l~~~~   93 (290)
T PF04733_consen   35 LERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE---------------------LKELL   93 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH---------------------HHHCC
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH---------------------HHHHH
Confidence            456667788888888888887777666666666777777777664322222211                     21111


Q ss_pred             c--CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705          170 K--NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE  247 (557)
Q Consensus       170 ~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~  247 (557)
                      .  ..+.++......|.++...|++++|++.+.+.     .+.++..                         ....+++.
T Consensus        94 ~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~a-------------------------l~Vqi~L~  143 (290)
T PF04733_consen   94 ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLA-------------------------LAVQILLK  143 (290)
T ss_dssp             CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHH-------------------------HHHHHHHH
T ss_pred             HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHH-------------------------HHHHHHHH
Confidence            1  12345566677777777788888887777654     3333322                         23667777


Q ss_pred             HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHH
Q 008705          248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR--EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL  325 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  325 (557)
                      .++++.|.+.++.+.+.+.++.-+....|++....|  .+.+|..+|+++....+.                        
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------------------------  199 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------------------------  199 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------------------------
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------------------------
Confidence            777777777777777666665555555555555544  366666666665443332                        


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCc-hHHHHHHHHHHhhCCCC
Q 008705          326 AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNT-PAAIDAYRRAVDINPRD  404 (557)
Q Consensus       326 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~  404 (557)
                                .+.++..++.++...|++++|...+++++..+|+++.++.+++.+....|+. +.+.+++.+....+|.+
T Consensus       200 ----------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  200 ----------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             ----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             ----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence                      3445555666666677777777777777666666666666666666666666 44445555555566655


Q ss_pred             hH
Q 008705          405 YR  406 (557)
Q Consensus       405 ~~  406 (557)
                      +.
T Consensus       270 ~~  271 (290)
T PF04733_consen  270 PL  271 (290)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.43  E-value=8.6e-12  Score=101.37  Aligned_cols=107  Identities=17%  Similarity=0.096  Sum_probs=101.9

Q ss_pred             HHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          397 AVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       397 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      ...+. ++..+..+.+|..+...|++++|...|+-...++|.+...|+++|.++..  +|++++|+.+|.+++.++|+++
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~--~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA--QKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCc
Confidence            44566 77888999999999999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705          476 IALNQLAKLHHALGRDEEAAFYYKKDLERM  505 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (557)
                      ..++++|.++...|+.+.|.+.|+.++..+
T Consensus       104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        104 QAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999954

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=1.5e-10  Score=101.79  Aligned_cols=282  Identities=13%  Similarity=0.029  Sum_probs=212.3

Q ss_pred             HHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHH
Q 008705          246 QELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL  325 (557)
Q Consensus       246 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  325 (557)
                      .+..+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|+++-...|.........+..++..+.+..+...
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999888888889999999999888888


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh
Q 008705          326 AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY  405 (557)
Q Consensus       326 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  405 (557)
                      +..+...+....+..-.-+-+.+..+++..+....++.-.  .+......+.|.+.++.|++++|++-|+.+++...-.+
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp  178 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP  178 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence            7776555444445555667777788888888777665321  25677888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhc----CCCC-------------------------HHHHHHHHHHHhHHhcCc
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFL----QPND-------------------------SRLWIAMAQCYETEQLHM  456 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~-------------------------~~~~~~l~~~~~~~~~~~  456 (557)
                      ..-++++.++++.|++..|+++..+.++.    .|.-                         ..+++..+.++.+  .|+
T Consensus       179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq--~~n  256 (459)
T KOG4340|consen  179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ--LRN  256 (459)
T ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh--ccc
Confidence            99999999999999999999998887754    3321                         1345566777788  899


Q ss_pred             HHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705          457 LEEAIKCYRRAANCN--DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE  534 (557)
Q Consensus       457 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  534 (557)
                      ++.|.+.+...--..  .-+|..+.++|..-. .+++-+..+-+.-.+.       ..|--++.+-++-.+|.+..-|+.
T Consensus       257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~-------~nPfP~ETFANlLllyCKNeyf~l  328 (459)
T KOG4340|consen  257 YEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ-------QNPFPPETFANLLLLYCKNEYFDL  328 (459)
T ss_pred             HHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh-------cCCCChHHHHHHHHHHhhhHHHhH
Confidence            988877654321111  123556666664433 2344444444444454       455555566666666666655555


Q ss_pred             HHHHH
Q 008705          535 AEVYC  539 (557)
Q Consensus       535 A~~~~  539 (557)
                      |...+
T Consensus       329 AADvL  333 (459)
T KOG4340|consen  329 AADVL  333 (459)
T ss_pred             HHHHH
Confidence            55443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.37  E-value=1.7e-10  Score=109.01  Aligned_cols=126  Identities=18%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705          368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ  447 (557)
Q Consensus       368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  447 (557)
                      |....+++..+..++..|++++|...++..+...|+|+..+...+.++...++..+|.+.+++++.+.|+.+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705          448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA  495 (557)
Q Consensus       448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  495 (557)
                      ++.+  .|++.+|+..++..+..+|+++..|..||..|..+|+..+|.
T Consensus       383 all~--~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         383 ALLK--GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHHh--cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence            5555  555555555555555555555555555555555555444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.36  E-value=5.8e-10  Score=100.81  Aligned_cols=315  Identities=18%  Similarity=0.139  Sum_probs=231.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      +.-....|.-++...++++|+..+.+.+..-.+..+-+..++                      .+..+..+.|.|++++
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG----------------------~l~~a~s~~g~y~~mL   63 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLG----------------------CLVTAHSEMGRYKEML   63 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------cchhhhhhhHHHHHHH
Confidence            344677888999999999999999999876554444333332                      2356677788887776


Q ss_pred             HHHHHHHhcCCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705          256 TKYEYLQGTFSF------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV  329 (557)
Q Consensus       256 ~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (557)
                      ..--..++...+      --+++..+++.+...-++.+++.+-+..+.....++.                         
T Consensus        64 ~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~-------------------------  118 (518)
T KOG1941|consen   64 KFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG-------------------------  118 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc-------------------------
Confidence            554443332211      2346778888888888999998888877776443321                         


Q ss_pred             HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705          330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR  403 (557)
Q Consensus       330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  403 (557)
                          ..-......+|+.+...+.++++++.|++|++...+.      ..++..+|..|...+++++|.-+..+|.++...
T Consensus       119 ----~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  119 ----QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             ----cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence                1122455568999999999999999999999874332      356889999999999999999999999886432


Q ss_pred             ----C------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          404 ----D------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       404 ----~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                          +      ..+++.++..+..+|....|.++++++.++.      +........+|.+|..  .|+.+.|..-|++|
T Consensus       195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~--~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS--RGDLERAFRRYEQA  272 (518)
T ss_pred             cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh--cccHhHHHHHHHHH
Confidence                2      3467889999999999999999999998763      3446678889999999  99999999999999


Q ss_pred             HhcCC------ChHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705          468 ANCND------SEAIALNQLAKLHHALGRDEE-----AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE  536 (557)
Q Consensus       468 l~~~p------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  536 (557)
                      .....      ....++...|.++....-..+     |++.-+++++.... .+..-.....+..++.+|..+|.-++=.
T Consensus       273 m~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~-IG~K~~vlK~hcrla~iYrs~gl~d~~~  351 (518)
T KOG1941|consen  273 MGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS-IGAKLSVLKLHCRLASIYRSKGLQDELR  351 (518)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhccchhHHH
Confidence            86532      124467777777765544444     88888888884332 2233445678888999999999888777


Q ss_pred             HHHHHHhc
Q 008705          537 VYCTRLLD  544 (557)
Q Consensus       537 ~~~~~al~  544 (557)
                      ..+.++-+
T Consensus       352 ~h~~ra~~  359 (518)
T KOG1941|consen  352 AHVVRAHE  359 (518)
T ss_pred             HHHHHHHH
Confidence            77766544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.35  E-value=4.6e-10  Score=106.06  Aligned_cols=152  Identities=20%  Similarity=0.217  Sum_probs=142.0

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                      |..+..++-.+..++..|++++|+..++..+...|+++..+...+.++++.++.++|.+.+++++..+|.....+.++|+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  493 (557)
                      ++.+.|++.+|+..++..+..+|+++..|..++..|..  +|+..+|..                 ..|..|...|++++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~--~g~~~~a~~-----------------A~AE~~~~~G~~~~  443 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE--LGNRAEALL-----------------ARAEGYALAGRLEQ  443 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH--hCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence            99999999999999999999999999999999999999  998776654                 45667788899999


Q ss_pred             HHHHHHHHHHH
Q 008705          494 AAFYYKKDLER  504 (557)
Q Consensus       494 A~~~~~~al~~  504 (557)
                      |+..+..+.++
T Consensus       444 A~~~l~~A~~~  454 (484)
T COG4783         444 AIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHHh
Confidence            99999998885

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.34  E-value=3.9e-09  Score=117.10  Aligned_cols=282  Identities=12%  Similarity=-0.005  Sum_probs=201.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      ......+|.++...|++++|...+++++...|........                    .....+|.++...|++++|.
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~a~~~lg~~~~~~G~~~~A~  511 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI--------------------VATSVLGEVHHCKGELARAL  511 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH--------------------HHHHHHHHHHHHcCCHHHHH
Confidence            4566678899999999999999999999865543211110                    12234688899999999999


Q ss_pred             HHHHHHHhcCCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705          256 TKYEYLQGTFSF------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV  329 (557)
Q Consensus       256 ~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (557)
                      ..+++++.....      ....+..+|.++...|++++|...+++++........                         
T Consensus       512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-------------------------  566 (903)
T PRK04841        512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-------------------------  566 (903)
T ss_pred             HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence            999999865332      1235677899999999999999999999875322100                         


Q ss_pred             HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC
Q 008705          330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD  404 (557)
Q Consensus       330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  404 (557)
                       ...+.....+..+|.++...|++++|...+.+++.....     ...++..+|.++...|++++|...+.++..+.+..
T Consensus       567 -~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        567 -EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             -ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence             000001223456788888899999999999998775321     24456678889999999999999999987753322


Q ss_pred             ---hHHHH----HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-
Q 008705          405 ---YRAWY----GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKCYRRAANCND-  472 (557)
Q Consensus       405 ---~~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p-  472 (557)
                         .....    .....+...|+.+.|..++.......+....    .+..++.++..  .|++++|...+++++.... 
T Consensus       646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~--~g~~~~A~~~l~~al~~~~~  723 (903)
T PRK04841        646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL--LGQFDEAEIILEELNENARS  723 (903)
T ss_pred             cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHH
Confidence               11111    1224455678899998888776553322221    24678888888  9999999999999887521 


Q ss_pred             -----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705          473 -----SEAIALNQLAKLHHALGRDEEAAFYYKKDLERM  505 (557)
Q Consensus       473 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (557)
                           ....++..+|.++...|+.++|...+.++++..
T Consensus       724 ~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        724 LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                 234578889999999999999999999999854

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.28  E-value=8e-11  Score=113.81  Aligned_cols=112  Identities=19%  Similarity=0.224  Sum_probs=99.0

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      +...|..++..|++++|+.+|++++.++|++..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ++++|+..|+++++++|+++.+...++.|...
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999998888888888665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.28  E-value=8.7e-11  Score=113.57  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=107.4

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ  453 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  453 (557)
                      +...|...+..|++++|+..|++++.++|++..+++.+|.++..+|++++|+..+++++.++|.++.+++.+|.++..  
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~--   82 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK--   82 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--
Confidence            456688899999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      +|++++|+..|++++.++|+++.+...++.+...+
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888886665

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.27  E-value=1.1e-09  Score=97.33  Aligned_cols=178  Identities=18%  Similarity=0.206  Sum_probs=125.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      .++..+|..|..++..|++.+|+..|++++...|...-+-...                      +.+|.++...|++.+
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~----------------------l~la~a~y~~~~y~~   60 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQ----------------------LMLAYAYYKQGDYEE   60 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHH----------------------HHHHHHHHHTT-HHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHH----------------------HHHHHHHHHcCCHHH
Confidence            4577899999999999999999999999999999876443322                      567999999999999


Q ss_pred             HHHHHHHHHhcCCCCH---HHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705          254 SLTKYEYLQGTFSFSN---YIQAQIAKAQYSLR-----------EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF  319 (557)
Q Consensus       254 A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  319 (557)
                      |+..+++.+..+|+++   .+++.+|.+++...           ...+|+..|+.+++..|+..-+-.....+....   
T Consensus        61 A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~---  137 (203)
T PF13525_consen   61 AIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR---  137 (203)
T ss_dssp             HHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH---
Confidence            9999999999999864   57888888876653           346899999999999998754432221111110   


Q ss_pred             hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHH
Q 008705          320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAA  390 (557)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A  390 (557)
                                    ..-..--+.+|..|...|.+..|+..++.+++..|+..   .++..++..|..+|..+.|
T Consensus       138 --------------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  138 --------------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             --------------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence                          00112234577788888888888888888888777754   4567777777777776644

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.25  E-value=2.4e-09  Score=97.33  Aligned_cols=184  Identities=16%  Similarity=0.118  Sum_probs=132.1

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      ..++..+|..|..+...|++++|+..|++++..+|....+....                      +.+|.++.+.++++
T Consensus        29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~----------------------l~la~ayy~~~~y~   86 (243)
T PRK10866         29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQ----------------------LDLIYAYYKNADLP   86 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH----------------------HHHHHHHHhcCCHH
Confidence            35678899999999999999999999999999999886554333                      56799999999999


Q ss_pred             HHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705          253 ESLTKYEYLQGTFSFS---NYIQAQIAKAQYSLR------------------EFEQVEVIFEELLRNDPYRVDDMDMYSN  311 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g------------------~~~~A~~~~~~~l~~~p~~~~~~~~~~~  311 (557)
                      +|+..+++.++.+|++   +.+++.+|.++...+                  ...+|+..|+++++..|+..-+-.....
T Consensus        87 ~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r  166 (243)
T PRK10866         87 LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR  166 (243)
T ss_pred             HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence            9999999999998875   567888888864443                  1357889999999999976432222111


Q ss_pred             HHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCch
Q 008705          312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTP  388 (557)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~  388 (557)
                      +....                 ..-.+--+.+|..|.+.|.+.-|+.-++.+++..|+.   .+++..++..|..+|..+
T Consensus       167 l~~l~-----------------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~  229 (243)
T PRK10866        167 LVFLK-----------------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA  229 (243)
T ss_pred             HHHHH-----------------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence            11100                 0011223356777777777777777777777766653   455666777777777777


Q ss_pred             HHHHHHH
Q 008705          389 AAIDAYR  395 (557)
Q Consensus       389 ~A~~~~~  395 (557)
                      +|.....
T Consensus       230 ~a~~~~~  236 (243)
T PRK10866        230 QADKVAK  236 (243)
T ss_pred             HHHHHHH
Confidence            7665544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.21  E-value=4.2e-09  Score=95.72  Aligned_cols=164  Identities=15%  Similarity=0.048  Sum_probs=139.2

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHH---HHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSA---WTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWY  409 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  409 (557)
                      .+..++..|..+...|++++|+..|++++...|....+   .+.+|.++.+.+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            56778889999999999999999999999999987655   4889999999999999999999999999887   55688


Q ss_pred             HHHHHHHHhC---------------C---hHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHhHHhc
Q 008705          410 GLGQAYEMMH---------------M---PLYALHYFRKSVFLQPNDSR-----------------LWIAMAQCYETEQL  454 (557)
Q Consensus       410 ~l~~~~~~~~---------------~---~~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~  454 (557)
                      .+|.++...+               +   ..+|+..|++.++..|++..                 --+.+|..|.+  .
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~--~  188 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK--R  188 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence            8888764443               1   24688999999999998742                 12456888999  9


Q ss_pred             CcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          455 HMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKD  501 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (557)
                      |.|..|+.-++.+++..|+.   .+++..++..|..+|..++|..+....
T Consensus       189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            99999999999999988765   569999999999999999998876554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.17  E-value=9.7e-09  Score=96.43  Aligned_cols=171  Identities=13%  Similarity=0.145  Sum_probs=117.3

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh-Cc
Q 008705          274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK-GQ  352 (557)
Q Consensus       274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~  352 (557)
                      ..+.++... ++++|+.+|++++.+.              ...|+...+.              ..+..+|.+|... |+
T Consensus        80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y--------------~~~G~~~~aA--------------~~~~~lA~~ye~~~~d  130 (282)
T PF14938_consen   80 EAANCYKKG-DPDEAIECYEKAIEIY--------------REAGRFSQAA--------------KCLKELAEIYEEQLGD  130 (282)
T ss_dssp             HHHHHHHHT-THHHHHHHHHHHHHHH--------------HHCT-HHHHH--------------HHHHHHHHHHCCTT--
T ss_pred             HHHHHHHhh-CHHHHHHHHHHHHHHH--------------HhcCcHHHHH--------------HHHHHHHHHHHHHcCC
Confidence            334444444 8888888888887542              2333333332              3455689999998 99


Q ss_pred             hHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHhC
Q 008705          353 HEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-------YRAWYGLGQAYEMMH  419 (557)
Q Consensus       353 ~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~  419 (557)
                      +++|+.+|++|+++....      ...+..+|.++...|+|++|++.|+++....-++       ...+...+.++...|
T Consensus       131 ~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~  210 (282)
T PF14938_consen  131 YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG  210 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC
Confidence            999999999999874221      3456789999999999999999999998753221       234567788999999


Q ss_pred             ChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          420 MPLYALHYFRKSVFLQPND-----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~-----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                      ++..|...+++....+|..     ..+...+-.++..+....+++|+.-|.+...+++-
T Consensus       211 D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  211 DYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             -HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            9999999999999888754     33555566666554466788888888877666553

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.17  E-value=2.2e-09  Score=90.26  Aligned_cols=202  Identities=17%  Similarity=0.177  Sum_probs=150.9

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY  415 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  415 (557)
                      ++..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            56678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCChHHHHHHHHHHHhcCCCCHH--HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705          416 EMMHMPLYALHYFRKSVFLQPNDSR--LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  493 (557)
                      .--|++.-|..-+.+-.+-+|+||-  .|..+-.   .  .-++.+|...+.+-.+......+.+......   +|+..+
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~--k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~  215 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---Q--KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE  215 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---h--hCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH
Confidence            9999999999999999999999975  3333321   2  4567777765544333333333333222221   222211


Q ss_pred             HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                       ...++++..-............+.++.+|+.+...|+.++|...|+-++..+
T Consensus       216 -e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         216 -ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             -HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence             1223333331000000122346789999999999999999999999888754

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.17  E-value=4.1e-09  Score=93.57  Aligned_cols=176  Identities=20%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705          269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS  348 (557)
Q Consensus       269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  348 (557)
                      +..++..|..++..|+|.+|+..|++++...|..                               +..+.+.+.+|.+++
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-------------------------------~~a~~A~l~la~a~y   53 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-------------------------------PYAPQAQLMLAYAYY   53 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-------------------------------TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------------------------------hHHHHHHHHHHHHHH
Confidence            3445555555666666666666666666555543                               223444555555566


Q ss_pred             hhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhc-----------CCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEM-----------KNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      ..|+++.|+..+++.++..|+++   .+++.+|.+++..           +...+|+..|+..+...|++..+-.     
T Consensus        54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~-----  128 (203)
T PF13525_consen   54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE-----  128 (203)
T ss_dssp             HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH-----
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH-----
Confidence            66666666666666555555543   3455555544332           2234566666666666665532211     


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHcCCH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLHHALGRD  491 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~  491 (557)
                               |...+..+-.   .-..--+.+|..|.+  .|.+..|+..++.+++..|+.+   .++..++..|.++|..
T Consensus       129 ---------A~~~l~~l~~---~la~~e~~ia~~Y~~--~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~  194 (203)
T PF13525_consen  129 ---------AKKRLAELRN---RLAEHELYIARFYYK--RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK  194 (203)
T ss_dssp             ---------HHHHHHHHHH---HHHHHHHHHHHHHHC--TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred             ---------HHHHHHHHHH---HHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence                     0000000000   001122445666666  6666666666666666666542   3566666666666666


Q ss_pred             HHH
Q 008705          492 EEA  494 (557)
Q Consensus       492 ~~A  494 (557)
                      +.|
T Consensus       195 ~~a  197 (203)
T PF13525_consen  195 QAA  197 (203)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            633

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.15  E-value=1e-09  Score=88.90  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGL  411 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  411 (557)
                      ++++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            344555555555666666666666655555543   3455555555555566666666665555555543   3455555


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSR  440 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  440 (557)
                      |.++...|++++|+.++++++...|++..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            55555555555555555555555555543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.5e-09  Score=97.26  Aligned_cols=120  Identities=23%  Similarity=0.268  Sum_probs=107.8

Q ss_pred             CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh-cCcHHHHHHH
Q 008705          385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ-LHMLEEAIKC  463 (557)
Q Consensus       385 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~~~A~~~  463 (557)
                      ...+.-+.-++.-+..+|+|.+.|..||.+|..+|++..|...|.+++++.|+++..+..+|.++.... .....++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            346778888899999999999999999999999999999999999999999999999999999887611 2246689999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      +++++..+|.+..+++.||..++..|++.+|+..++..++.
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999984

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.14  E-value=1.1e-09  Score=102.71  Aligned_cols=168  Identities=22%  Similarity=0.224  Sum_probs=111.6

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCC--C----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CC----HHHHHHH
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPR--D----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--ND----SRLWIAM  445 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~l  445 (557)
                      |..|...|++++|.++|.++....-.  +    ...+...+.+|... ++++|+.+|++++.+.-  .+    ..++..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            44555555666666666555443211  1    23344455555444 77777777777776531  11    4467888


Q ss_pred             HHHHhHHhc-CcHHHHHHHHHHHHhcCCC--h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHH
Q 008705          446 AQCYETEQL-HMLEEAIKCYRRAANCNDS--E----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA  518 (557)
Q Consensus       446 ~~~~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  518 (557)
                      |.+|..  . |++++|+++|++|+.+...  .    ..++..+|.++...|+|++|+..|+++.................
T Consensus       121 A~~ye~--~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  121 AEIYEE--QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHCC--TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHH--HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            999988  8 8999999999999886321  1    34788999999999999999999999887321111112233456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          519 LIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       519 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      ++..+.|++..|+...|...+++....+|.
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            677889999999999999999999988763

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.14  E-value=1.6e-09  Score=93.42  Aligned_cols=108  Identities=19%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      ...|+.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++..  .|++++|+.++++++.+.|.....+..+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~--~g~~~eA~~~~~~Al~~~~~~~~~~~~l  112 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS--NGEHTKALEYYFQALERNPFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            4445566666666666666666666666554432   2356666666666  6666666666666666666666655555


Q ss_pred             HHHHH-------HcCCHHHHHHHHHHHHHHHHhhhcCCcc
Q 008705          482 AKLHH-------ALGRDEEAAFYYKKDLERMEAEEREGPN  514 (557)
Q Consensus       482 a~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (557)
                      |.++.       ..|++++|...+++++.......+..|.
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            55555       6677776666666666544443335553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.8e-09  Score=96.80  Aligned_cols=121  Identities=19%  Similarity=0.268  Sum_probs=95.5

Q ss_pred             chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC---ChHHHHHHH
Q 008705          352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH---MPLYALHYF  428 (557)
Q Consensus       352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~  428 (557)
                      ..+.-+.-++.-+..+|++.+-|..+|.+|+..|++..|...|++++++.|+++..+..+|.++..+.   +..++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            35566666777777788888888888888888888888888888888888888888888888776543   346788888


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       429 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      ++++..+|.+..+...+|..++.  .|+|.+|+..++..+...|.+
T Consensus       217 ~~al~~D~~~iral~lLA~~afe--~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFE--QGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhcCCCC
Confidence            88888888888888888888888  888888888888888876654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.13  E-value=1.3e-09  Score=88.25  Aligned_cols=106  Identities=18%  Similarity=0.134  Sum_probs=89.1

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIA  444 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  444 (557)
                      +.+++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|+++.|+.+|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3567888888889999999999999998888766   5678888999999999999999999988887775   567888


Q ss_pred             HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705          445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL  478 (557)
Q Consensus       445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  478 (557)
                      +|.++..  .|++++|+.++++++...|++..+.
T Consensus        82 ~~~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        82 LGMSLQE--LGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHH--hCChHHHHHHHHHHHHHCcCChhHH
Confidence            8889888  8999999999999988888876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=6.7e-08  Score=84.36  Aligned_cols=259  Identities=17%  Similarity=0.112  Sum_probs=187.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705          240 FLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF  319 (557)
Q Consensus       240 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  319 (557)
                      |-..-++-.|+|..++..-.+.-... ........+++.|..+|++...+.-....-   .....+...++.++...+..
T Consensus        13 F~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   13 FNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence            34566777899999888777764433 677888889999999998775544333221   11123334444444444444


Q ss_pred             hHHH-HHHHHHHhh-CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705          320 SALS-YLAHRVFMT-DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       320 ~~~~-~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                      +... .+.+.+... ...+......-|.+|...|++++|++...+.     .+.++...-..++.++.+++-|...++++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333 333332222 2333345556678899999999999888763     34566777778899999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          398 VDINPRDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       398 l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                      .+++.+  .++..||.++..    .++..+|..+|+..-+..|..+......+.|...  +|++++|...++.++..+++
T Consensus       164 q~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~--~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  164 QQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ--LGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             HccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH--hcCHHHHHHHHHHHHhccCC
Confidence            988754  344455555543    3568899999999999888889999999999999  99999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHH
Q 008705          474 EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE  517 (557)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  517 (557)
                      +++++.++..+-...|...++..-+-.-+..      .+|+++-
T Consensus       240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~------~~p~h~~  277 (299)
T KOG3081|consen  240 DPETLANLIVLALHLGKDAEVTERNLSQLKL------SHPEHPF  277 (299)
T ss_pred             CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh------cCCcchH
Confidence            9999999999999999987776655444442      5666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.12  E-value=1.2e-08  Score=92.56  Aligned_cols=275  Identities=16%  Similarity=0.142  Sum_probs=200.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFS---NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE  317 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  317 (557)
                      .|.-++...++.+|+....+.+..-.+.   ...+-.+..++..+|.|++++..--..+....+..+.            
T Consensus        12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds------------   79 (518)
T KOG1941|consen   12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS------------   79 (518)
T ss_pred             HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence            4666777788888888888777653332   2234455667778888887766544433322211110            


Q ss_pred             chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC-----HHHHHHHhHHHHhcCCchHHHH
Q 008705          318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY-----LSAWTLMGHEYVEMKNTPAAID  392 (557)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~  392 (557)
                                      ...-+++..++..+....++.+++.+-+..+.+....     ..+...+|..+..++.++++++
T Consensus        80 ----------------~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le  143 (518)
T KOG1941|consen   80 ----------------DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE  143 (518)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence                            0123567788999999999999999988887764332     3567789999999999999999


Q ss_pred             HHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHhHHhcCc
Q 008705          393 AYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN----D------SRLWIAMAQCYETEQLHM  456 (557)
Q Consensus       393 ~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~------~~~~~~l~~~~~~~~~~~  456 (557)
                      .|+.|+.+...+      ..++..||..+..+.++++|+.+..++.++...    +      ..+++.++..+..  .|+
T Consensus       144 sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~--~G~  221 (518)
T KOG1941|consen  144 SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL--LGR  221 (518)
T ss_pred             HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH--hcc
Confidence            999999875433      457889999999999999999999999876432    2      2366788999999  999


Q ss_pred             HHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705          457 LEEAIKCYRRAANCN------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG  530 (557)
Q Consensus       457 ~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  530 (557)
                      ..+|.++.+++.++.      +-....+.-+|.+|...|+.+.|..-|+.+...... .+..-....++...|++.....
T Consensus       222 LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-~gdrmgqv~al~g~Akc~~~~r  300 (518)
T KOG1941|consen  222 LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-LGDRMGQVEALDGAAKCLETLR  300 (518)
T ss_pred             cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999987763      233457788999999999999999999999874332 2233445667777777776555


Q ss_pred             CHHH-----HHHHHHHHhccC
Q 008705          531 RFEE-----AEVYCTRLLDYT  546 (557)
Q Consensus       531 ~~~~-----A~~~~~~al~~~  546 (557)
                      -..+     |+++-++++++.
T Consensus       301 ~~~k~~~Crale~n~r~levA  321 (518)
T KOG1941|consen  301 LQNKICNCRALEFNTRLLEVA  321 (518)
T ss_pred             HhhcccccchhHHHHHHHHHH
Confidence            4444     888777777653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.09  E-value=5.1e-09  Score=105.40  Aligned_cols=133  Identities=15%  Similarity=0.042  Sum_probs=110.5

Q ss_pred             HHHHHHHhhhC---chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC--------CchHHHHHHHHHHhh--CCCChHH
Q 008705          341 CIIGNYYSLKG---QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK--------NTPAAIDAYRRAVDI--NPRDYRA  407 (557)
Q Consensus       341 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~--~p~~~~~  407 (557)
                      +..|..+...+   ++.+|+.+|+++++++|++..++..++.++....        +...+....++++.+  +|.++.+
T Consensus       343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~  422 (517)
T PRK10153        343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI  422 (517)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence            45566665443   4789999999999999999999988888775542        234556666666553  7777888


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      +..+|..+...|++++|...+++++.++| +..+|..+|.++..  .|++++|+..|++|+.++|.++.
T Consensus       423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~--~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        423 YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL--KGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999999999999 58899999999999  99999999999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=3.2e-09  Score=91.57  Aligned_cols=120  Identities=14%  Similarity=0.073  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHhcCcCC--HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHH
Q 008705          353 HEKSVVYFRRALKLDKNY--LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHY  427 (557)
Q Consensus       353 ~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~  427 (557)
                      +..+...+...++.++..  ...++.+|.++...|++++|+..|++++.+.|+.   ..++.++|.++...|++++|+.+
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444444444444444333  4456677777777777777777777777665542   34677777777777777777777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHh-------HHhcCcHH-------HHHHHHHHHHhcCCCh
Q 008705          428 FRKSVFLQPNDSRLWIAMAQCYE-------TEQLHMLE-------EAIKCYRRAANCNDSE  474 (557)
Q Consensus       428 ~~~a~~~~p~~~~~~~~l~~~~~-------~~~~~~~~-------~A~~~~~~al~~~p~~  474 (557)
                      |++++.+.|.....+..+|.++.       .  .|+++       +|+.+|++++..+|.+
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~--~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIE--QGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH--cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            77777777777777777776666       5  55655       5555666666666644

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.09  E-value=1.8e-09  Score=83.43  Aligned_cols=96  Identities=24%  Similarity=0.469  Sum_probs=45.4

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ  453 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  453 (557)
                      ++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.+|++++...|.+..++..+|.++..  
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK--   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH--
Confidence            334444444444444444444444444444444444444444444444444444444444444444444444444444  


Q ss_pred             cCcHHHHHHHHHHHHhcC
Q 008705          454 LHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~  471 (557)
                      .|++++|...+.+++...
T Consensus        81 ~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          81 LGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHhHHHHHHHHHHHHccC
Confidence            444444444444444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.09  E-value=2e-09  Score=93.15  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      ...+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+.++++++...|.++..+..+|
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34456666777777777777777777776665542   345666666666666666666666666666666666666666


Q ss_pred             HHHhHHhcCcHHHHHHHHHHH
Q 008705          447 QCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      .++..  .|+...+...++++
T Consensus       114 ~~~~~--~g~~~~a~~~~~~A  132 (172)
T PRK02603        114 VIYHK--RGEKAEEAGDQDEA  132 (172)
T ss_pred             HHHHH--cCChHhHhhCHHHH
Confidence            66666  66666655554444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.09  E-value=1.6e-09  Score=83.74  Aligned_cols=99  Identities=27%  Similarity=0.521  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM  418 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  418 (557)
                      +++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCC
Q 008705          419 HMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       419 ~~~~~A~~~~~~a~~~~p~  437 (557)
                      |+++.|...+.+++...|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988763

>PRK15331 chaperone protein SicA; Provisional

Probab=99.08  E-value=2.6e-09  Score=87.37  Aligned_cols=110  Identities=13%  Similarity=0.118  Sum_probs=97.0

Q ss_pred             HHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705          363 ALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW  442 (557)
Q Consensus       363 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  442 (557)
                      +..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|.+||.++..+++|++|+..|..+..++++||...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            33445566677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          443 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      +..|.|+..  +|+.+.|+.+|+.++. .|.+.
T Consensus       109 f~agqC~l~--l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        109 FFTGQCQLL--MRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             chHHHHHHH--hCCHHHHHHHHHHHHh-CcchH
Confidence            999999999  9999999999999988 35443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.08  E-value=2.3e-08  Score=105.21  Aligned_cols=210  Identities=16%  Similarity=0.121  Sum_probs=156.9

Q ss_pred             HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc-CcC----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL-DKN----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN  401 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  401 (557)
                      .+.+..+|+..-.|......+...++.++|.+.+++||.. ++.    -...|..+-+....-|.-+.-.+.|++|.+..
T Consensus      1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence            4445556677777777777777888888888888888764 222    23456655555556666666677777777755


Q ss_pred             CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--hHHHHH
Q 008705          402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIALN  479 (557)
Q Consensus       402 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~  479 (557)
                      . ....+..|..+|...+++++|.++|+.+++...+...+|..+|..++.  .++-+.|...+.+|++.-|.  +.....
T Consensus      1528 d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~--~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1528 D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR--QNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred             c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc--ccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence            3 456677778888888888888888888888777777788888888887  77778888888888887776  667777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          480 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ..|.+-++.|+.+.+...|+-.+.       ..|...+.|.-+...-.++|+.+.+...|++++.+.
T Consensus      1605 kfAqLEFk~GDaeRGRtlfEgll~-------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLS-------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHhhcCCchhhHHHHHHHHh-------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            788888888888888888888777       677788888888888888888888888888887764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=5.3e-10  Score=80.35  Aligned_cols=66  Identities=27%  Similarity=0.590  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC-CchHHHHHHHHHHhhCC
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK-NTPAAIDAYRRAVDINP  402 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p  402 (557)
                      +.+|..+|.++...|++++|+.+|+++++++|+++.+|+.+|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 45555555555555554

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.08  E-value=7.8e-07  Score=81.79  Aligned_cols=221  Identities=25%  Similarity=0.261  Sum_probs=173.3

Q ss_pred             hhhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          249 RMHKESLTKYEYLQGTFSF--SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      +.+..+...+...+...+.  ........+..+...+++..+...+...+..                            
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   88 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL----------------------------   88 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------------------------
Confidence            4555566666666655554  2555666666666666666666666666542                            


Q ss_pred             HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhH-HHHhcCCchHHHHHHHHHHhhCC---
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH-EYVEMKNTPAAIDAYRRAVDINP---  402 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p---  402 (557)
                          ...+.....+...+..+...+++..++..+.+++...+.........+. ++...|+++.|+..+.+++...|   
T Consensus        89 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  164 (291)
T COG0457          89 ----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN  164 (291)
T ss_pred             ----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence                0233456677788888888888999999999999887777666666666 88999999999999999988776   


Q ss_pred             CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705          403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      .........+..+...++++.|+..+.+++...+. ....+..++..+..  .+++++|+..+.+++...|.....+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~  242 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK--LGKYEEALEYYEKALELDPDNAEALYNL  242 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH--cccHHHHHHHHHHHHhhCcccHHHHhhH
Confidence            34566667777788889999999999999999988 68889999999999  9999999999999999988877777888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 008705          482 AKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +..+...+.++++...+.+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         243 ALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            8888877789999999999888

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=4.6e-10  Score=80.66  Aligned_cols=65  Identities=29%  Similarity=0.562  Sum_probs=31.8

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-ChHHHHHHHHHHHhcCC
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH-MPLYALHYFRKSVFLQP  436 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p  436 (557)
                      .+|..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            344444444444444555555554444444444444444444444444 34444444444444443

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.07  E-value=3.7e-09  Score=91.51  Aligned_cols=119  Identities=15%  Similarity=0.178  Sum_probs=102.0

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG  410 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  410 (557)
                      +.....++.+|..+...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+..+++++...|.+...+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3566778999999999999999999999999887653   4689999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      +|.++...|+...+...+.+++                      ..+++|++++++++..+|++
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~----------------------~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAE----------------------ALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHH----------------------HHHHHHHHHHHHHHhhCchh
Confidence            9999999999877765555432                      34567888888888888776

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=4.2e-07  Score=85.91  Aligned_cols=141  Identities=11%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCCC------CC--CcHHHHHHH
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL-RNDPY------RV--DDMDMYSNV  312 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~------~~--~~~~~~~~~  312 (557)
                      ...+....+..-+......+..+..+++..+...+..++..|++.+|.+.+...- ...|.      ..  -.+..++.|
T Consensus       213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI  292 (696)
T KOG2471|consen  213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI  292 (696)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence            3344445555555555555555555556666666666666666666665554321 11111      00  112344555


Q ss_pred             HHhccchhHHHHHHHHHHhh---------C---------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHH
Q 008705          313 LYAKECFSALSYLAHRVFMT---------D---------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW  374 (557)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~---------~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  374 (557)
                      .+..+.+.....++.+++..         .         ..+-++.++.|..|...|++-.|.++|.++......++..|
T Consensus       293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW  372 (696)
T KOG2471|consen  293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW  372 (696)
T ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence            55555555555555555430         0         01334455556666666666666666666666555556666


Q ss_pred             HHHhHHHH
Q 008705          375 TLMGHEYV  382 (557)
Q Consensus       375 ~~l~~~~~  382 (557)
                      ..++.+.+
T Consensus       373 LRlAEcCi  380 (696)
T KOG2471|consen  373 LRLAECCI  380 (696)
T ss_pred             HHHHHHHH
Confidence            65555543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.07  E-value=8.9e-09  Score=86.67  Aligned_cols=107  Identities=14%  Similarity=0.114  Sum_probs=99.9

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      ...+..+|.+|..|-..|-..-|.-.|.+++.+.|.-++++.-|                         |..+...|+++
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyL-------------------------G~Yl~~a~~fd  116 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL-------------------------GIYLTQAGNFD  116 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHH-------------------------HHHHHhcccch
Confidence            44577899999999999999999999999999999999888655                         99999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Q 008705          253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD  304 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  304 (557)
                      .|.+.|+..++++|....+....|..++.-|++.-|.+.+.+-.+.+|+++-
T Consensus       117 aa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         117 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             HHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            9999999999999999999999999999999999999999999999998763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.06  E-value=1.2e-05  Score=81.93  Aligned_cols=224  Identities=11%  Similarity=0.052  Sum_probs=150.7

Q ss_pred             chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705          155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH  234 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~  234 (557)
                      .+++..+.+.+.++.+..|+.+.+..+.|.++.+.|+.++|..+++..-...+.+......                   
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~-------------------   82 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF-------------------   82 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH-------------------
Confidence            4567888888999999999999999999999999999999997777665566665544433                   


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHH-H
Q 008705          235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNV-L  313 (557)
Q Consensus       235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~-~  313 (557)
                            +-.+|.+++++++|..+|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|.++-.......+ +
T Consensus        83 ------l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   83 ------LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             ------HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence                  488999999999999999999999999 88889999999999998877777667777788776554433333 3


Q ss_pred             Hhccchh---------HHHHHHHHHHhhC-CCChhH-HHHHHHHHhhhCchHHHHHHHHHH-Hhc-CcCCHHHHHHHhHH
Q 008705          314 YAKECFS---------ALSYLAHRVFMTD-KYRPES-CCIIGNYYSLKGQHEKSVVYFRRA-LKL-DKNYLSAWTLMGHE  380 (557)
Q Consensus       314 ~~~~~~~---------~~~~~~~~~~~~~-~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~l~~~  380 (557)
                      ......+         -+...++..+... +..... ....-.++...|++++|..++..- .+. .+.+...-...+..
T Consensus       156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl  235 (932)
T KOG2053|consen  156 QSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL  235 (932)
T ss_pred             HhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            3332222         1233334444443 221111 112223455678888888888432 222 23333333344455


Q ss_pred             HHhcCCchHHHHHHHHHHhhCCCC
Q 008705          381 YVEMKNTPAAIDAYRRAVDINPRD  404 (557)
Q Consensus       381 ~~~~~~~~~A~~~~~~al~~~p~~  404 (557)
                      +...+++.+-.+...+++..++++
T Consensus       236 lk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  236 LKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHhcChHHHHHHHHHHHHhCCcc
Confidence            555666666666666655555554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.06  E-value=1.4e-08  Score=85.08  Aligned_cols=117  Identities=17%  Similarity=0.085  Sum_probs=83.3

Q ss_pred             HhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCC
Q 008705          417 MMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGR  490 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~  490 (557)
                      ..++...+...+++.+...|+.   ..+.+.+|.++..  .|++++|+..|+.++...|+.   +.+...+|.++...|+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~--~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~  100 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE--QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ  100 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence            4666777777777777777776   4456667777777  788888888888777766544   3467777888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      +++|+..++...        ..+-.+.++..+|.++...|++++|+..|++++
T Consensus       101 ~d~Al~~L~~~~--------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  101 YDEALATLQQIP--------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHhcc--------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            888877775532        345556677777888888888888888877764

>PRK11906 transcriptional regulator; Provisional

Probab=99.06  E-value=9.3e-09  Score=98.05  Aligned_cols=149  Identities=12%  Similarity=0.075  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHH---hcCcCCHHHHHHHhHHHHhc---------CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          352 QHEKSVVYFRRAL---KLDKNYLSAWTLMGHEYVEM---------KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       352 ~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      ..+.|+.+|.+++   .++|.+..++-.++.++...         ....+|.+.-+++++++|.|+.++..+|.+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            4567889999999   89999999998888887654         23567889999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHcCCHHHHHHHH
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL-HHALGRDEEAAFYY  498 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~  498 (557)
                      +++.|+..|++++.++|+.+.+|+..|.+...  .|+.++|++.++++++++|....+-...-++ .+-....+.|+..|
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~--~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFH--NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY  430 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence            99999999999999999999999999999999  9999999999999999999875543333333 33445678888877


Q ss_pred             HHHH
Q 008705          499 KKDL  502 (557)
Q Consensus       499 ~~al  502 (557)
                      -+-.
T Consensus       431 ~~~~  434 (458)
T PRK11906        431 YKET  434 (458)
T ss_pred             hhcc
Confidence            6543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.04  E-value=1.7e-08  Score=84.58  Aligned_cols=117  Identities=19%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             hcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCc
Q 008705          383 EMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHM  456 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~  456 (557)
                      ..++...+...++..+..+|+.   ..+.+.+|.++...|++++|+..|++++...|+.   +.+...++.++..  .|+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~--~~~  100 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ--QGQ  100 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH--cCC
Confidence            4666777777777777777776   4556667777777777777777777777766544   3356677777777  777


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008705          457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL  502 (557)
Q Consensus       457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  502 (557)
                      +++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus       101 ~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  101 YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            8877777755 23334446677777888888888888877777653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=9.9e-07  Score=88.43  Aligned_cols=323  Identities=18%  Similarity=0.204  Sum_probs=196.3

Q ss_pred             HHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhc
Q 008705          186 LKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQ-ELRMHKESLTKYEYLQGT  264 (557)
Q Consensus       186 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~l~~  264 (557)
                      |...|+.+.|.+..+-+     .....|..++..+.....++-             |.+++ .+++ ......++++.+ 
T Consensus       738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDV-------------AkVClGhm~~-aRgaRAlR~a~q-  797 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDV-------------AKVCLGHMKN-ARGARALRRAQQ-  797 (1416)
T ss_pred             EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccH-------------HHHhhhhhhh-hhhHHHHHHHHh-
Confidence            45578888887765543     234568778776654443322             22222 2222 222334455533 


Q ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705          265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG  344 (557)
Q Consensus       265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  344 (557)
                      +|+.  .-...|.+...+|..++|..+|++.-+.        +.+-.++...|.++++..+++.--.  -.-..+++..+
T Consensus       798 ~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DR--iHLr~Tyy~yA  865 (1416)
T KOG3617|consen  798 NGEE--DEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDR--IHLRNTYYNYA  865 (1416)
T ss_pred             CCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccc--eehhhhHHHHH
Confidence            3322  2233455566777777777777776542        3455566667777777666654111  11234667777


Q ss_pred             HHHhhhCchHHHHHHHHHH----------HhcCcC----------CHHHHHHHhHHHHhcCCchHHHHHHHHHHhh----
Q 008705          345 NYYSLKGQHEKSVVYFRRA----------LKLDKN----------YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI----  400 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~a----------l~~~p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----  400 (557)
                      ..+...++.+.|+++|+++          +.-+|.          +...|...|......|+.+.|+.+|..|-+.    
T Consensus       866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~V  945 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMV  945 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhe
Confidence            7777777778888777764          222332          2344556677777778888888777766442    


Q ss_pred             -----------------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc------CCCC---HH-----------HHH
Q 008705          401 -----------------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL------QPND---SR-----------LWI  443 (557)
Q Consensus       401 -----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~---~~-----------~~~  443 (557)
                                       ...+..+.|.||..|...|++.+|+.+|.++-..      ..++   .+           -..
T Consensus       946 rI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v 1025 (1416)
T KOG3617|consen  946 RIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLV 1025 (1416)
T ss_pred             eeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHH
Confidence                             2345677889999999999999999999886432      2111   11           122


Q ss_pred             HHHHHHhHHhcC-cHHHHHHHHHHH------Hh-----------------cCC-ChHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          444 AMAQCYETEQLH-MLEEAIKCYRRA------AN-----------------CND-SEAIALNQLAKLHHALGRDEEAAFYY  498 (557)
Q Consensus       444 ~l~~~~~~~~~~-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~~A~~~~  498 (557)
                      ..+..|..  .| ....|+..|.+|      ++                 ++| .+|..+..-+..+....+|++|...+
T Consensus      1026 ~aArYyEe--~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1026 SAARYYEE--LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred             HHHHHHHH--cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            23344444  44 666666666543      11                 122 46778888889999999999998765


Q ss_pred             HH------HHHHHHhhh---------------cCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          499 KK------DLERMEAEE---------------REG---PNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       499 ~~------al~~~~~~~---------------~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      -.      ++..+...+               ...   .....++..+|.+..++|.|..|-+-|.++
T Consensus      1104 ~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1104 CLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            44      444332210               011   124577888999999999999998888775

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.04  E-value=5.8e-07  Score=82.66  Aligned_cols=203  Identities=27%  Similarity=0.258  Sum_probs=179.1

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHh--cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH-
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALK--LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ-  413 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-  413 (557)
                      .......+..+...+++..+...+...+.  ..+.....+...+..+...+++..++..+..++...+.+.......+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            56677788889999999999999999987  678888999999999999999999999999999988887666666666 


Q ss_pred             HHHHhCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcC
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQP---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS-EAIALNQLAKLHHALG  489 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g  489 (557)
                      ++...|+++.|...+.+++...|   .........+..+..  .++++.|+..+.+++...+. ....+..++..+...+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA--LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH--hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            89999999999999999988776   345566777777778  89999999999999999999 6899999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      ++++|...+..++.       ..|.....+..++..+...|+++++...+.+++...|.
T Consensus       217 ~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         217 KYEEALEYYEKALE-------LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             cHHHHHHHHHHHHh-------hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999       56666677788888888888899999999999998764

>PRK15331 chaperone protein SicA; Provisional

Probab=99.03  E-value=6e-09  Score=85.24  Aligned_cols=105  Identities=10%  Similarity=0.024  Sum_probs=98.3

Q ss_pred             HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      +..+.++..+..+..|.-+...|++++|...|+-..-.+|.+++.|..||.|+..  +++|++|+.+|..+..+++++|.
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~--~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL--KKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcccCCCC
Confidence            3345555677888999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ..+..|.|+..+|+.+.|+.+|+.++.
T Consensus       107 p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        107 PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999998

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.02  E-value=1.9e-08  Score=101.27  Aligned_cols=143  Identities=17%  Similarity=0.035  Sum_probs=118.2

Q ss_pred             hcCcCCHHHH--HHHhHHHHhcCC---chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC--------ChHHHHHHHHHH
Q 008705          365 KLDKNYLSAW--TLMGHEYVEMKN---TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH--------MPLYALHYFRKS  431 (557)
Q Consensus       365 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a  431 (557)
                      ...|.+..+|  +..|..+...++   ...|+.+|+++++++|++..++-.++.++....        +...+....+++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3456666654  456666665544   779999999999999999999999888886542        234566666676


Q ss_pred             Hhc--CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 008705          432 VFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE  509 (557)
Q Consensus       432 ~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (557)
                      +.+  .|.++.++..+|.....  .|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++++.      
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~--~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~------  481 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALV--KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN------  481 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------
Confidence            664  77788999999999999  99999999999999999995 78999999999999999999999999999      


Q ss_pred             cCCcchHH
Q 008705          510 REGPNMVE  517 (557)
Q Consensus       510 ~~~~~~~~  517 (557)
                       .+|..+.
T Consensus       482 -L~P~~pt  488 (517)
T PRK10153        482 -LRPGENT  488 (517)
T ss_pred             -cCCCCch
Confidence             7888775

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=8.1e-09  Score=95.95  Aligned_cols=142  Identities=18%  Similarity=0.149  Sum_probs=93.3

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM  420 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  420 (557)
                      -..|+.|++.|+|..|...|++++..-....            .-+.++.....  ++     -..++.+++.++.++++
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~-----k~~~~lNlA~c~lKl~~  272 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--AL-----KLACHLNLAACYLKLKE  272 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HH-----HHHHhhHHHHHHHhhhh
Confidence            3478888888888888888888876532210            00001110000  00     12356677777777777


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 008705          421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA-AFYYK  499 (557)
Q Consensus       421 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~  499 (557)
                      |.+|+..+.+++.++|++..+++..|.++..  +|+++.|+..|++++++.|.+-.+...+..+-.+..++.+. .+.|.
T Consensus       273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~--~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  273 YKEAIESCNKVLELDPNNVKALYRRGQALLA--LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777  77777777777777777777777777777776666555444 56666


Q ss_pred             HHHH
Q 008705          500 KDLE  503 (557)
Q Consensus       500 ~al~  503 (557)
                      +++.
T Consensus       351 ~mF~  354 (397)
T KOG0543|consen  351 NMFA  354 (397)
T ss_pred             HHhh
Confidence            6665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=8.9e-09  Score=95.68  Aligned_cols=99  Identities=19%  Similarity=0.278  Sum_probs=88.8

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      .++.+++.++.++++|.+|+..+.+++.++|++..+++..|.++..+|+++.|+..|++++++.|.|..+...+..+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HhcCcHHH-HHHHHHHHHhcCC
Q 008705          452 EQLHMLEE-AIKCYRRAANCND  472 (557)
Q Consensus       452 ~~~~~~~~-A~~~~~~al~~~p  472 (557)
                        ...+.+ ..+.|.+++..-+
T Consensus       338 --~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  338 --IREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             --HHHHHHHHHHHHHHHhhccc
Confidence              555544 4788888876543

>PRK11906 transcriptional regulator; Provisional

Probab=98.99  E-value=5.7e-08  Score=92.80  Aligned_cols=162  Identities=14%  Similarity=0.054  Sum_probs=134.3

Q ss_pred             HHHhHHHHhcC---CchHHHHHHHHHH---hhCCCChHHHHHHHHHHHHh---------CChHHHHHHHHHHHhcCCCCH
Q 008705          375 TLMGHEYVEMK---NTPAAIDAYRRAV---DINPRDYRAWYGLGQAYEMM---------HMPLYALHYFRKSVFLQPNDS  439 (557)
Q Consensus       375 ~~l~~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~  439 (557)
                      +..|...+..+   ..+.|+.+|.+++   .++|....++..++.++...         ....+|....+++++++|.|+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            55666555544   3567899999999   99999999999999998754         234578999999999999999


Q ss_pred             HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 008705          440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL  519 (557)
Q Consensus       440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (557)
                      .++..+|.++..  .++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++       .+|....+-
T Consensus       339 ~a~~~~g~~~~~--~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-------LsP~~~~~~  409 (458)
T PRK11906        339 KILAIMGLITGL--SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ-------LEPRRRKAV  409 (458)
T ss_pred             HHHHHHHHHHHh--hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cCchhhHHH
Confidence            999999999998  99999999999999999999999999999999999999999999999999       678765544


Q ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHhcc
Q 008705          520 IFLATH-CRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       520 ~~la~~-~~~~g~~~~A~~~~~~al~~  545 (557)
                      ...-.+ ..-....+.|+..|-+-.+.
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (458)
T PRK11906        410 VIKECVDMYVPNPLKNNIKLYYKETES  436 (458)
T ss_pred             HHHHHHHHHcCCchhhhHHHHhhcccc
Confidence            333222 33345678888888765543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.98  E-value=1.8e-09  Score=80.86  Aligned_cols=80  Identities=29%  Similarity=0.305  Sum_probs=44.0

Q ss_pred             hCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705          418 MHMPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA  495 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  495 (557)
                      +|+++.|+.+|+++++..|.  +...++.+|.++..  .|++++|+.++++ ...+|.++...+.+|.++.++|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~--~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ--QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH--TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH--CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            35555566666666555553  23445555666665  6666666666655 4455555555555566666666666666


Q ss_pred             HHHHH
Q 008705          496 FYYKK  500 (557)
Q Consensus       496 ~~~~~  500 (557)
                      ..|++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            55554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.98  E-value=3.5e-07  Score=96.59  Aligned_cols=221  Identities=13%  Similarity=0.072  Sum_probs=151.3

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHH
Q 008705          251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF  330 (557)
Q Consensus       251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (557)
                      -.+..+-|++.+..+|++...|......+.+.++.+.|.+.+++++..-..+.+.                         
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee------------------------- 1494 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE------------------------- 1494 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH-------------------------
Confidence            3445677888888999999999999999999999999999999999753221110                         


Q ss_pred             hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH
Q 008705          331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG  410 (557)
Q Consensus       331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  410 (557)
                          ..-.+|..+-++...-|.-+.-.+.|++|.+... ...++..+..+|...+.+++|.++|+..++........|..
T Consensus      1495 ----EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~ 1569 (1710)
T KOG1070|consen 1495 ----EKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIM 1569 (1710)
T ss_pred             ----HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHH
Confidence                0112333334444444555556666666665432 23456666667777777777777777777766666677777


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      +|..++.+++-+.|...+.+|++.-|.  +.......+.+-++  .|+.+.+...|+-.+...|...+.|.-+...-.+.
T Consensus      1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk--~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK--YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh--cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHcc
Confidence            777777777777777777777776666  45566666666666  77777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHH
Q 008705          489 GRDEEAAFYYKKDLE  503 (557)
Q Consensus       489 g~~~~A~~~~~~al~  503 (557)
                      |+.+.+...|++++.
T Consensus      1648 ~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1648 GDIKYVRDLFERVIE 1662 (1710)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            777777777777766

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.98  E-value=1.2e-09  Score=81.88  Aligned_cols=81  Identities=27%  Similarity=0.411  Sum_probs=46.3

Q ss_pred             cCCchHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI  461 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~  461 (557)
                      .|+++.|+..++++++..|.  +...++.+|.+|+..|++++|+.++++ .+.+|.++.....+|.++..  +|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~--l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK--LGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH--TT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH--hCCHHHHH
Confidence            45566666666666666553  244455556666666666666666666 55555555555555666666  66666666


Q ss_pred             HHHHHH
Q 008705          462 KCYRRA  467 (557)
Q Consensus       462 ~~~~~a  467 (557)
                      ++|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            666543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.96  E-value=2.3e-09  Score=75.88  Aligned_cols=56  Identities=27%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      ++..|++++|+..|+++++.+|++..+|+.+|.++..+|++++|+.+|+++++.+|
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            33333333333333333333333333333333333333333333333333333333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.94  E-value=6.7e-06  Score=75.91  Aligned_cols=296  Identities=15%  Similarity=0.060  Sum_probs=218.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      ++--...|.+....|+-..|.+.-.++-++-..+.+.+..+                       .-+..-.-.|+++.|.
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhl-----------------------LeAQaal~eG~~~~Ar  140 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHL-----------------------LEAQAALLEGDYEDAR  140 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHH-----------------------HHHHHHHhcCchHHHH
Confidence            33344567777788888888888888765544444444333                       3477777889999999


Q ss_pred             HHHHHHHhcCCCCHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh--
Q 008705          256 TKYEYLQGTFSFSNY-IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT--  332 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  332 (557)
                      +-|+.++. +|+.-. -+..+-.--...|+.+.|+.+-+.+-...|.-.-+....-......|+++.+..+.+.....  
T Consensus       141 ~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v  219 (531)
T COG3898         141 KKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV  219 (531)
T ss_pred             HHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence            99998865 343211 12222223346799999999999999999988777777777777889999888887654332  


Q ss_pred             -CCCCh---hHHHHHHHHHh-hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705          333 -DKYRP---ESCCIIGNYYS-LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA  407 (557)
Q Consensus       333 -~~~~~---~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  407 (557)
                       .+...   .+-..-+.... ...+...|...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..| ++. 
T Consensus       220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~-  297 (531)
T COG3898         220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPD-  297 (531)
T ss_pred             hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChH-
Confidence             22211   11122222222 234688899999999999999999999999999999999999999999999988 444 


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHH---HhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKS---VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a---~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  484 (557)
                         ++.+|....--+.++.-++++   ..+.|++.+.....+..-..  .|++..|..--+.+....|.. .++..|+.+
T Consensus       298 ---ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld--a~e~~~ARa~Aeaa~r~~pre-s~~lLlAdI  371 (531)
T COG3898         298 ---IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD--AGEFSAARAKAEAAAREAPRE-SAYLLLADI  371 (531)
T ss_pred             ---HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh--ccchHHHHHHHHHHhhhCchh-hHHHHHHHH
Confidence               445555555555666666655   45679999999999999999  999999999999999988874 466778888


Q ss_pred             HHHc-CCHHHHHHHHHHHHH
Q 008705          485 HHAL-GRDEEAAFYYKKDLE  503 (557)
Q Consensus       485 ~~~~-g~~~~A~~~~~~al~  503 (557)
                      -... |+-.++..++-++++
T Consensus       372 eeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         372 EEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HhhccCchHHHHHHHHHHhc
Confidence            7765 999999999999997

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.94  E-value=1.1e-09  Score=98.32  Aligned_cols=228  Identities=13%  Similarity=0.018  Sum_probs=170.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705          179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY  258 (557)
Q Consensus       179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~  258 (557)
                      +-..|.-|+++|+|++||.||.+++..+|.|+-.+..                         .|.+|++...+..|...+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~N-------------------------RA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHIN-------------------------RALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhh-------------------------HHHHHHHHHHHHHHHHhH
Confidence            4567899999999999999999999999998865543                         499999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705          259 EYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE  338 (557)
Q Consensus       259 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (557)
                      ..++.++.....+|...+.+-..+|...+|.+.++.++++.|.+.+....++.+-..    .+.. +..   ...|....
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl----~E~~-I~~---KsT~G~~~  226 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL----RERK-IAT---KSTPGFTP  226 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch----Hhhh-HHh---hcCCCCCc
Confidence            999999988889999999999999999999999999999999976655444443221    1110 111   11111001


Q ss_pred             H---------HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705          339 S---------CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY  409 (557)
Q Consensus       339 ~---------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  409 (557)
                      +         .-.-|..+...|.++.++.++-+-+..+..+...... +..+.+..+++.++....+++..+|.......
T Consensus       227 A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s  305 (536)
T KOG4648|consen  227 ARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS  305 (536)
T ss_pred             cccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccC
Confidence            1         1124677778888888888887766554444333333 56677778889999888888888887777777


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR  440 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  440 (557)
                      +.|.+-...|...++...++.++.+.|.+..
T Consensus       306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648|consen  306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             CCchhHHHHhhhhhcCcchhheeeecccccc
Confidence            7777777778888888888888888776543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.92  E-value=7.3e-07  Score=78.47  Aligned_cols=188  Identities=16%  Similarity=0.126  Sum_probs=139.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      .-+..||..|....+.|++++|++.|+.+...+|..+-+-..+                      +.++.++++.+++++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~----------------------l~l~yA~Yk~~~y~~   89 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQ----------------------LDLAYAYYKNGEYDL   89 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHH----------------------HHHHHHHHhcccHHH
Confidence            3467899999999999999999999999999999877543332                      456999999999999


Q ss_pred             HHHHHHHHHhcCCCCH---HHHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705          254 SLTKYEYLQGTFSFSN---YIQAQIAKAQYSL--------REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL  322 (557)
Q Consensus       254 A~~~~~~~l~~~p~~~---~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  322 (557)
                      |+...++.+..+|.++   .+++..|.+++..        .-..+|+..|+..+...|+..-+-+....+-.....    
T Consensus        90 A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~----  165 (254)
T COG4105          90 ALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA----  165 (254)
T ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH----
Confidence            9999999999988754   5677888887643        235788899999999999875544443332221111    


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          323 SYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                                   -..--..+|+.|.+.|.+..|+..++.+++..|+.   .+++..+...|..+|-.++|...-. .+.
T Consensus       166 -------------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~  231 (254)
T COG4105         166 -------------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLG  231 (254)
T ss_pred             -------------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHH
Confidence                         11223457888888888888888888888876554   3567777788888888887766543 444


Q ss_pred             hC
Q 008705          400 IN  401 (557)
Q Consensus       400 ~~  401 (557)
                      .+
T Consensus       232 ~N  233 (254)
T COG4105         232 AN  233 (254)
T ss_pred             hc
Confidence            43

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.92  E-value=4.7e-09  Score=74.28  Aligned_cols=64  Identities=17%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      .+|..+...|++++|+..|+++++.+|+++.+|..+|.++..  .|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ--QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCCC
Confidence            567788888888888888888888888888888888888888  8888888888888888888764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.88  E-value=7.2e-08  Score=88.19  Aligned_cols=102  Identities=17%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             HHHHHHhHHH-HhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 008705          372 SAWTLMGHEY-VEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIA  444 (557)
Q Consensus       372 ~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  444 (557)
                      ..++..+..+ ...|++++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3444444443 34566666666666666666655   3566666666666666666666666666655543   455666


Q ss_pred             HHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      +|.++..  .|++++|+..|+++++..|+..
T Consensus       223 lg~~~~~--~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQD--KGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHH--cCCHHHHHHHHHHHHHHCcCCH
Confidence            6666666  6666666666666666666554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.87  E-value=1.2e-07  Score=74.93  Aligned_cols=96  Identities=24%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---hHHHHH
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAIALN  479 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~  479 (557)
                      .+++.+|.++..+|+.++|+.+|++++......   ..++..+|..+..  +|++++|+..+++++...|+   +..+..
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~--LG~~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN--LGRYDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence            355666666666666666666666666654333   3456666666666  66666666666666666565   455555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          480 QLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      .++.++...|++++|+..+-.++.
T Consensus        80 f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   80 FLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666666666655554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.87  E-value=8.9e-08  Score=92.12  Aligned_cols=125  Identities=18%  Similarity=0.303  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh
Q 008705          271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK  350 (557)
Q Consensus       271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  350 (557)
                      +.-.+..++...++++.|+..|+++.+.+|+                                     +...++.++...
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-------------------------------------v~~~LA~v~l~~  213 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPE-------------------------------------VAVLLARVYLLM  213 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCc-------------------------------------HHHHHHHHHHhc
Confidence            3344445555667788888888888776653                                     344577777777


Q ss_pred             CchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHH
Q 008705          351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRK  430 (557)
Q Consensus       351 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  430 (557)
                      ++..+|+..+.++++.+|.+...+...+..++..++++.|+...++++...|.+...|+.|+.+|..+|+++.|+..++.
T Consensus       214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888877765


Q ss_pred             HH
Q 008705          431 SV  432 (557)
Q Consensus       431 a~  432 (557)
                      +-
T Consensus       294 ~P  295 (395)
T PF09295_consen  294 CP  295 (395)
T ss_pred             Cc
Confidence            43

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.87  E-value=8.7e-08  Score=87.68  Aligned_cols=106  Identities=12%  Similarity=0.068  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHH-hhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHH
Q 008705          337 PESCCIIGNYY-SLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWY  409 (557)
Q Consensus       337 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  409 (557)
                      ....+..|..+ ...|++++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|++++...|++   +.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45666666665 56799999999999999999998   5799999999999999999999999999988875   78899


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW  442 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  442 (557)
                      .+|.++..+|++++|+..|+++++..|++..+-
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999999999999986543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.86  E-value=2.7e-05  Score=72.03  Aligned_cols=288  Identities=13%  Similarity=0.016  Sum_probs=217.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSF--SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF  319 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  319 (557)
                      |.+-...|+-..|.+.-.+.-++-..  .+-++..-++.-.-.|+++.|.+-|+.++..-....-.+..+..-....|..
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Gar  170 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAR  170 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccH
Confidence            66666778888888888777643322  4556677788888999999999999988763322222233333333457899


Q ss_pred             hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc---CcCCH---HH--HHHHhHHHHhcCCchHHH
Q 008705          320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL---DKNYL---SA--WTLMGHEYVEMKNTPAAI  391 (557)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~---~~--~~~l~~~~~~~~~~~~A~  391 (557)
                      +.+..+...+...-|.-+.++...-...+..|+++.|++..+.....   .++-.   .+  +...+.... .-+...|.
T Consensus       171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar  249 (531)
T COG3898         171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASAR  249 (531)
T ss_pred             HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHH
Confidence            99999999999999999999988888899999999999999876543   22211   11  222222222 34578899


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHH---HHH
Q 008705          392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR---RAA  468 (557)
Q Consensus       392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~---~al  468 (557)
                      ..-.+++++.|+...+-..-+..++..|+..++-.+++.+.+..|. |.+    +..|.....|+  .++.-++   +..
T Consensus       250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gd--ta~dRlkRa~~L~  322 (531)
T COG3898         250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGD--TALDRLKRAKKLE  322 (531)
T ss_pred             HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCC--cHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999885 443    33444411444  4444444   445


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc
Q 008705          469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH-GRFEEAEVYCTRLLDY  545 (557)
Q Consensus       469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  545 (557)
                      .+.|++.+.....+..-..-|++..|..--+.+..       ..| ...++..++.+.... |+-.++..++-++++-
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-------~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-------EAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-------hCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            67899999999999999999999999998888887       445 456788899998766 9999999999999985

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=2.1e-06  Score=75.23  Aligned_cols=254  Identities=15%  Similarity=0.085  Sum_probs=175.4

Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHH
Q 008705          276 AKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEK  355 (557)
Q Consensus       276 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  355 (557)
                      .+-++..|+|..++..-.+.-... ...+....+...+...|.+.....-....   ....-.+...++.+...-++.++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHH
Confidence            456777899998887766654433 34444455555666665554332221111   11122344456666666666555


Q ss_pred             HHHHHHHHHhc-C-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 008705          356 SVVYFRRALKL-D-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVF  433 (557)
Q Consensus       356 A~~~~~~al~~-~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  433 (557)
                      -+.-..+-+.. . ..+......-|.+++..|++++|++.....     .+.++...-.+++.++.+++-|...++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            55444443322 2 223344556678899999999999888763     3455666667888999999999999999998


Q ss_pred             cCCCCHHHHHHHHHHHhH--HhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcC
Q 008705          434 LQPNDSRLWIAMAQCYET--EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE  511 (557)
Q Consensus       434 ~~p~~~~~~~~l~~~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (557)
                      ++.+  ..+..+|..+..  .-.+++.+|.-+|+..-...|..+..+...+.++..+|++++|...++.++.       .
T Consensus       166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~-------k  236 (299)
T KOG3081|consen  166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD-------K  236 (299)
T ss_pred             cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh-------c
Confidence            8654  334445544443  1145789999999999998888899999999999999999999999999999       7


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHH-HHHhccCC
Q 008705          512 GPNMVEALIFLATHCRAHGRFEEAEVYC-TRLLDYTG  547 (557)
Q Consensus       512 ~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~  547 (557)
                      ++.+++.+.++..+-...|...++..-+ .+.....|
T Consensus       237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p  273 (299)
T KOG3081|consen  237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP  273 (299)
T ss_pred             cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence            8999999999999999999887665544 44444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.84  E-value=9.7e-08  Score=91.88  Aligned_cols=121  Identities=21%  Similarity=0.297  Sum_probs=100.6

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP  421 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  421 (557)
                      .+-.++...++++.|+..|++..+.+|+   +...++.++...++-.+|++.+.+++..+|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3455566678888888888888877754   5667888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      +.|+...++++...|.+...|..|+.+|..  .|++++|+..+..+
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~--~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQ--LGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHh--cCCHHHHHHHHhcC
Confidence            888888888888888888888888888888  88888888777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.82  E-value=2e-06  Score=71.04  Aligned_cols=160  Identities=16%  Similarity=0.098  Sum_probs=132.5

Q ss_pred             HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh-hCCCChHHHHHHHHHHHHhCChH
Q 008705          344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD-INPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      +....+.=+.+....-..+.+...|.. .-.+.+|....+.|++.+|...|.+++. +...++..+.++++..+..+++.
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A  141 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA  141 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence            333444456666666666666666663 4577899999999999999999999987 67788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          423 YALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (557)
                      .|...+++..+.+|.  .+.....+|..+..  .|++.+|...|+.++...|. +.+....+..+.++|+..+|..-+..
T Consensus       142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa--~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA--QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHHHhhcCCccCCCCchHHHHHHHHh--cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            999999999998875  46778889999999  99999999999999998876 66777788999999999999888877


Q ss_pred             HHHHHHh
Q 008705          501 DLERMEA  507 (557)
Q Consensus       501 al~~~~~  507 (557)
                      ..+.+.+
T Consensus       219 v~d~~~r  225 (251)
T COG4700         219 VVDTAKR  225 (251)
T ss_pred             HHHHHHh
Confidence            7764433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.82  E-value=1.1e-07  Score=75.09  Aligned_cols=95  Identities=20%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN---DSRLWIAMA  446 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~  446 (557)
                      +++.+|.++-..|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            45666666666666666666666666654333   445666666666777777777777666666666   555556666


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHh
Q 008705          447 QCYETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~  469 (557)
                      .++..  .|+.++|+..+-.++.
T Consensus        83 l~L~~--~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   83 LALYN--LGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHH--CCCHHHHHHHHHHHHH
Confidence            66666  6777777666665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=1.5e-05  Score=80.35  Aligned_cols=265  Identities=15%  Similarity=0.099  Sum_probs=165.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHH
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLT  256 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~  256 (557)
                      ..+|.++.-+...++.+.|+++|+++-.  |.                                 -.+...+.++..+++
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~--ha---------------------------------fev~rmL~e~p~~~e  903 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGV--HA---------------------------------FEVFRMLKEYPKQIE  903 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCC--hH---------------------------------HHHHHHHHhChHHHH
Confidence            4688888888999999999999998632  10                                 123333445566665


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCC
Q 008705          257 KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR  336 (557)
Q Consensus       257 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (557)
                      .|-+-    ..++.+|..-|..+...|+.+.|+.+|..+-.        +..+..+...+|+.+++..+++.     ..+
T Consensus       904 ~Yv~~----~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e-----sgd  966 (1416)
T KOG3617|consen  904 QYVRR----KRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE-----SGD  966 (1416)
T ss_pred             HHHHh----ccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh-----ccc
Confidence            55443    23457788889999999999999999998754        33444556667888888777665     346


Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcC------cCCHHHHHHHhHHHHhcC--CchHHHHHHHHHHhhCCCChHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLD------KNYLSAWTLMGHEYVEMK--NTPAAIDAYRRAVDINPRDYRAW  408 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~  408 (557)
                      ..+++.+|+.|...|++.+|+.+|.+|-...      ..+. .--.+..+....+  +.-.|-.+|+..    +.   ..
T Consensus       967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nlal~s~~~d~v~aArYyEe~----g~---~~ 1038 (1416)
T KOG3617|consen  967 KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLALMSGGSDLVSAARYYEEL----GG---YA 1038 (1416)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHhhcCchhHHHHHHHHHHc----ch---hh
Confidence            6789999999999999999999998875431      1110 0011111111111  122222333221    00   00


Q ss_pred             HHHHHHHHHhCChHHHHHHHHH----------HHhcCC-CCHHHHHHHHHHHhHHhcCcHHHHHHHHHH------HHhc-
Q 008705          409 YGLGQAYEMMHMPLYALHYFRK----------SVFLQP-NDSRLWIAMAQCYETEQLHMLEEAIKCYRR------AANC-  470 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~----------a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~------al~~-  470 (557)
                      ..-..+|.+.|++.+|++.-=+          +-.++| .||..+..-+..+..  ..+|++|+.++-.      |+.+ 
T Consensus      1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~--~~qyekAV~lL~~ar~~~~AlqlC 1116 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN--NQQYEKAVNLLCLAREFSGALQLC 1116 (1416)
T ss_pred             hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112334445555555443211          112333 457777777888888  8888888876543      3332 


Q ss_pred             ---------------CC------Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          471 ---------------ND------SE---AIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       471 ---------------~p------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                                     .|      +.   ..++..+|.++.++|.|..|-+-|.++-.
T Consensus      1117 ~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1117 KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred             hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence                           11      11   34788999999999999999988887755

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.81  E-value=1.7e-05  Score=80.85  Aligned_cols=288  Identities=12%  Similarity=0.030  Sum_probs=198.4

Q ss_pred             HhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705          187 KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS  266 (557)
Q Consensus       187 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  266 (557)
                      ...+++.+|.....+.++.+|+...+.                         ...|..+.++|+.++|..+++..-...+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~-------------------------vLkaLsl~r~gk~~ea~~~Le~~~~~~~   74 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAK-------------------------VLKALSLFRLGKGDEALKLLEALYGLKG   74 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHH-------------------------HHHHHHHHHhcCchhHHHHHhhhccCCC
Confidence            467899999999999999999877554                         3348899999999999988888877788


Q ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705          267 FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY  346 (557)
Q Consensus       267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  346 (557)
                      ++...+-.+-.+|..++++++|..+|++++..+|. .+.+..+-..+...+.+.+....+-++.+..|.++-.+..+..+
T Consensus        75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl  153 (932)
T KOG2053|consen   75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL  153 (932)
T ss_pred             CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence            88888889999999999999999999999999999 77788888888888888888888888888888887765554444


Q ss_pred             Hhh-hCch---------HHHHHHHHHHHhcC-cCCH-HHHHHHhHHHHhcCCchHHHHHHHHHH-h-hCCCChHHHHHHH
Q 008705          347 YSL-KGQH---------EKSVVYFRRALKLD-KNYL-SAWTLMGHEYVEMKNTPAAIDAYRRAV-D-INPRDYRAWYGLG  412 (557)
Q Consensus       347 ~~~-~g~~---------~~A~~~~~~al~~~-p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al-~-~~p~~~~~~~~l~  412 (557)
                      +.. ....         .-|...+++.++.. +-.. .-....-.++..+|.+++|.+.+..-+ + ..+.+...-...+
T Consensus       154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~  233 (932)
T KOG2053|consen  154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL  233 (932)
T ss_pred             HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            432 2222         23556667776655 2221 123344466778899999999994433 3 3344444445566


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHhH----------HhcCcHHHHHHHHHHHHhcCCChHH-HHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA-MAQCYET----------EQLHMLEEAIKCYRRAANCNDSEAI-ALNQ  480 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~----------~~~~~~~~A~~~~~~al~~~p~~~~-~~~~  480 (557)
                      ..+...+++.+-.+...+++...+++...+.. .-.++..          .-.+..+.-++..++.+......|. +...
T Consensus       234 dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le  313 (932)
T KOG2053|consen  234 DLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE  313 (932)
T ss_pred             HHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH
Confidence            78888999999999999999999987222211 1111111          0023334444444444443222332 3333


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 008705          481 LAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~  500 (557)
                      +-.-+...|+.+++...|-+
T Consensus       314 l~kr~~~~gd~ee~~~~y~~  333 (932)
T KOG2053|consen  314 LDKRYKLIGDSEEMLSYYFK  333 (932)
T ss_pred             HHHHhcccCChHHHHHHHHH
Confidence            44444566888886655533

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.80  E-value=2.7e-06  Score=75.00  Aligned_cols=163  Identities=18%  Similarity=0.227  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705          268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY  347 (557)
Q Consensus       268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  347 (557)
                      .+..++..|....+.|++++|+..|+.+....|..                               |....+...++..+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-------------------------------~~~~qa~l~l~yA~   81 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-------------------------------PYSEQAQLDLAYAY   81 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------------------------cccHHHHHHHHHHH
Confidence            44556666677777777777777777777666653                               23455666677777


Q ss_pred             hhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcC--------CchHHHHHHHHHHhhCCCChHH---------
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMK--------NTPAAIDAYRRAVDINPRDYRA---------  407 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~---------  407 (557)
                      ++.++++.|+...++-+.+.|+++   .+++..|.+++..=        -..+|+..|+..+...|++.-+         
T Consensus        82 Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~  161 (254)
T COG4105          82 YKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK  161 (254)
T ss_pred             HhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            777777777777777777666554   33555555544321        1345666666677777765111         


Q ss_pred             --------HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705          408 --------WYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       408 --------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~  463 (557)
                              -..+|..|.+.|.+..|+..++.+++..|+.   .+++..+..+|..  +|-.++|.+.
T Consensus       162 ~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~--lgl~~~a~~~  226 (254)
T COG4105         162 LNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA--LGLTDEAKKT  226 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH--hCChHHHHHH
Confidence                    1234555555555555555555555554433   2344555555555  5555555444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.78  E-value=3.6e-09  Score=95.13  Aligned_cols=106  Identities=18%  Similarity=0.154  Sum_probs=97.0

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM  420 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  420 (557)
                      -..|+-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|++.+.+..|...+..|+.++.....+|...|.+-..+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          421 PLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       421 ~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      ..+|.+.++.++.+.|++.+..-.++
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHHH
Confidence            99999999999999999766443333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.7e-07  Score=78.00  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=77.1

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRD-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      .-|.-++..|+|++|...|..|+.+.|..     ...+.+.|.+..+++.++.|+..+.++++++|.+..++...+.+|.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            34566667777777777777777776654     2345667777777888888888888888888877777777788887


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  484 (557)
                      +  +..+++|+..|++.++.+|....+....+.+
T Consensus       180 k--~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  180 K--MEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             h--hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            7  7888888888888888877766555554444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.74  E-value=0.00023  Score=68.84  Aligned_cols=51  Identities=14%  Similarity=0.080  Sum_probs=43.7

Q ss_pred             hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHh
Q 008705          168 SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSL  219 (557)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  219 (557)
                      -.+.+|.|...|+.+-.-+-.+ .+++....|++.+...|..+.+|...+..
T Consensus        12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~   62 (656)
T KOG1914|consen   12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIER   62 (656)
T ss_pred             HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence            3456899999999998877666 99999999999999999999999877543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.72  E-value=2.8e-06  Score=70.18  Aligned_cols=153  Identities=16%  Similarity=0.192  Sum_probs=128.0

Q ss_pred             HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705          381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVF-LQPNDSRLWIAMAQCYETEQLHMLEE  459 (557)
Q Consensus       381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~~~~~~  459 (557)
                      ....=+++....-..+.+...|. ..-.+.||.....+|++.+|...|++++. +...++.++..++...+.  .+++..
T Consensus        66 ~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa--~~~~A~  142 (251)
T COG4700          66 LQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA--IQEFAA  142 (251)
T ss_pred             HHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh--hccHHH
Confidence            33444566666666777777774 34467899999999999999999999986 567889999999999999  999999


Q ss_pred             HHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 008705          460 AIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV  537 (557)
Q Consensus       460 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  537 (557)
                      |...+++..+.+|.  .+.....+|..+...|++.+|...|+.++.       ..| .+.+....+..+.++|+.++|..
T Consensus       143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-------~yp-g~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-------YYP-GPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-------hCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence            99999999998874  467888899999999999999999999998       344 57788889999999999888877


Q ss_pred             HHHHHhc
Q 008705          538 YCTRLLD  544 (557)
Q Consensus       538 ~~~~al~  544 (557)
                      -+..+.+
T Consensus       215 q~~~v~d  221 (251)
T COG4700         215 QYVAVVD  221 (251)
T ss_pred             HHHHHHH
Confidence            6665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.72  E-value=3.4e-08  Score=72.82  Aligned_cols=74  Identities=34%  Similarity=0.425  Sum_probs=63.0

Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      |+-..++.++|.+|..+|++++|+.+|+++++.....+...|..+.++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44567899999999999999999999999999744443344566889999999999999999999999999876

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.72  E-value=4.3e-08  Score=70.07  Aligned_cols=53  Identities=21%  Similarity=0.177  Sum_probs=19.7

Q ss_pred             CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705          385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       385 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  437 (557)
                      |++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            33333333333333333333333333333333333333333333333333333

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.69  E-value=6.8e-08  Score=69.04  Aligned_cols=67  Identities=18%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705          416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  484 (557)
                      ...|++++|+..|++++..+|++..++..+|.++..  .|++++|...+++++..+|+++.++..++.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK--QGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH--TT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            568999999999999999999999999999999999  9999999999999999999998888777754

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=8.3e-06  Score=77.40  Aligned_cols=366  Identities=16%  Similarity=0.114  Sum_probs=225.8

Q ss_pred             chhHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHHHh--ccCCCCHHHHHHHHHhhhcHHHHhhcCC
Q 008705          155 NRELISLERELSTSWKNGTVDPFGLYLYGIV-LKDKGNENLARTVFVESV--NSYPWNWNAWSELKSLCTSIDILNSLNL  231 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~l~~~~~~~~~~~~l~~  231 (557)
                      +.+++...+.+..+...+..+..+++..+.+ +++.|.... ...++...  ..+-..            ..+....+..
T Consensus        30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~------------~~~~~~gld~   96 (696)
T KOG2471|consen   30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADA------------PGDVSSGLSL   96 (696)
T ss_pred             CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhcc------------ccchhcchhh
Confidence            4455555555655555666666666666655 444444332 22222211  111000            0111122233


Q ss_pred             ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC----CHH-HHHHHHHHHHhcccHHHHHHHHH---HHHHh---CC
Q 008705          232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF----SNY-IQAQIAKAQYSLREFEQVEVIFE---ELLRN---DP  300 (557)
Q Consensus       232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~-~~~~la~~~~~~g~~~~A~~~~~---~~l~~---~p  300 (557)
                      .+..+.++..|.+++....+..|++...........    ... +-+..-..+....+.++|+.++.   +++..   .+
T Consensus        97 ~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~  176 (696)
T KOG2471|consen   97 KQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL  176 (696)
T ss_pred             hcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            344566777888888888888888877766543211    111 11222233444455566655443   22221   11


Q ss_pred             --CCCCc-------------------------HHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCch
Q 008705          301 --YRVDD-------------------------MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH  353 (557)
Q Consensus       301 --~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  353 (557)
                        ++...                         .......+........+..-.+.+..+..+.+.+....++.++..|++
T Consensus       177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~  256 (696)
T KOG2471|consen  177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNH  256 (696)
T ss_pred             cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcch
Confidence              11100                         111122233344444455555666667778889999999999999999


Q ss_pred             HHHHHHHHHHH-hcCcC------C--HHHHHHHhHHHHhcCCchHHHHHHHHHHhh---------CC---------CChH
Q 008705          354 EKSVVYFRRAL-KLDKN------Y--LSAWTLMGHEYVEMKNTPAAIDAYRRAVDI---------NP---------RDYR  406 (557)
Q Consensus       354 ~~A~~~~~~al-~~~p~------~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~  406 (557)
                      .+|.+.+...- ...|.      .  -..|.++|.+++.+|.|..+..+|.+|++.         .|         +..+
T Consensus       257 ~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~e  336 (696)
T KOG2471|consen  257 PKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSME  336 (696)
T ss_pred             HHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchh
Confidence            99998876531 12222      1  234789999999999999999999999961         11         2367


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc-----------------------C--------
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-----------------------H--------  455 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-----------------------~--------  455 (557)
                      +.|+.|..|...|++-.|.++|.++......+|+.|..++.|++....                       |        
T Consensus       337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~  416 (696)
T KOG2471|consen  337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIE  416 (696)
T ss_pred             hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeec
Confidence            889999999999999999999999999999999999999999875100                       0        


Q ss_pred             ----------------cHHHHHHHHHHHHhcC---------------------------------------------C-C
Q 008705          456 ----------------MLEEAIKCYRRAANCN---------------------------------------------D-S  473 (557)
Q Consensus       456 ----------------~~~~A~~~~~~al~~~---------------------------------------------p-~  473 (557)
                                      ..+-|.-|++.++-+-                                             | +
T Consensus       417 ~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~s  496 (696)
T KOG2471|consen  417 ENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQS  496 (696)
T ss_pred             ccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCC
Confidence                            0234566666665431                                             1 0


Q ss_pred             h-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH-----HcCCHHHHHH
Q 008705          474 E-----------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR-----AHGRFEEAEV  537 (557)
Q Consensus       474 ~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~  537 (557)
                      .           ..++...+.+-..+|+.-.|+..-++.+.        -|+...++..||-+|.     -+.+..+|..
T Consensus       497 sp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq--------~~~lS~~~kfLGHiYAaEAL~lldr~seA~~  568 (696)
T KOG2471|consen  497 SPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQ--------LADLSKIYKFLGHIYAAEALCLLDRPSEAGA  568 (696)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHh--------hhhhhhHHHHHHHHHHHHHHHHcCChhhhhh
Confidence            1           12456677788899999999999999887        4667777777776664     4566677766


Q ss_pred             HHHH
Q 008705          538 YCTR  541 (557)
Q Consensus       538 ~~~~  541 (557)
                      .+.-
T Consensus       569 HL~p  572 (696)
T KOG2471|consen  569 HLSP  572 (696)
T ss_pred             ccCh
Confidence            5544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=1.5e-07  Score=68.36  Aligned_cols=64  Identities=28%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL  478 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  478 (557)
                      .+|...+++++|+.++++++.++|+++..|..+|.++..  .|++++|+..|+++++..|+++.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~--~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ--LGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH--hccHHHHHHHHHHHHHHCCCcHHHH
Confidence            344445555555555555555555555555555555555  5555555555555555555444433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=1.6e-07  Score=68.19  Aligned_cols=67  Identities=18%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA  444 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  444 (557)
                      ..+|...+++++|++++++++..+|+++..|..+|.++..+|++.+|+..|+++++..|+++.+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            3455666666666666666666666666666666666666666666666666666666665554433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.65  E-value=8.5e-07  Score=78.92  Aligned_cols=99  Identities=14%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCY  449 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~  449 (557)
                      ..+.-++..|+|..|...|..-++..|++   +.+++.||.+++.+|+++.|...|..+++..|++   |++++.+|.+.
T Consensus       146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~  225 (262)
T COG1729         146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL  225 (262)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence            33333444444555555555555444443   3444455555555555555555555554444333   34455555555


Q ss_pred             hHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          450 ETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       450 ~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      ..  +|+.++|...|+++++..|..+.
T Consensus       226 ~~--l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         226 GR--LGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HH--hcCHHHHHHHHHHHHHHCCCCHH
Confidence            55  55555555555555555554433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.62  E-value=1.2e-06  Score=70.39  Aligned_cols=110  Identities=23%  Similarity=0.176  Sum_probs=93.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      ..+..+|..|...++.|+|.+|++.|+.+....|...-+-.                      ..+.++.+|+..+++++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~q----------------------AqL~l~yayy~~~~y~~   65 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQ----------------------AQLDLAYAYYKQGDYEE   65 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHH----------------------HHHHHHHHHHHccCHHH
Confidence            45778999999999999999999999999999997653332                      22456999999999999


Q ss_pred             HHHHHHHHHhcCCCC---HHHHHHHHHHHHhccc---------------HHHHHHHHHHHHHhCCCCCCc
Q 008705          254 SLTKYEYLQGTFSFS---NYIQAQIAKAQYSLRE---------------FEQVEVIFEELLRNDPYRVDD  305 (557)
Q Consensus       254 A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~  305 (557)
                      |+..+++.++++|.+   ..+++..|.+++.+..               ..+|...|+++++..|++.-+
T Consensus        66 A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   66 AIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999999999998876   4678999999998876               889999999999999986543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=1.3e-06  Score=73.00  Aligned_cols=114  Identities=24%  Similarity=0.104  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA  482 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  482 (557)
                      +..-|.-++..|+|++|..-|..|+.+.|..+     ..+.+.|.+..+  ++.++.|+....++++++|.+..++...|
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK--l~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK--LRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH--hhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            34457888999999999999999999998764     367889999999  99999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705          483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG  530 (557)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  530 (557)
                      .+|.++.++++|+.-|++.++       .+|...++.-..+++--...
T Consensus       176 eayek~ek~eealeDyKki~E-------~dPs~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKILE-------SDPSRREAREAIARLPPKIN  216 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHHHH-------hCcchHHHHHHHHhcCHHHH
Confidence            999999999999999999999       78887777777666544433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.56  E-value=2.6e-06  Score=68.40  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705          268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY  347 (557)
Q Consensus       268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  347 (557)
                      .+..++..|...+..|+|++|++.|+.+....|..                               +....+...+|.+|
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-------------------------------~ya~qAqL~l~yay   57 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-------------------------------EYAEQAQLDLAYAY   57 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------------------------------cccHHHHHHHHHHH
Confidence            34455666666666666666666666666666642                               23445555666666


Q ss_pred             hhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCC
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKN  386 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~  386 (557)
                      +..+++++|+..+++-++++|.++   .+++..|.+++....
T Consensus        58 y~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   58 YKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence            666666666666666666666543   345555555555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.56  E-value=2e-06  Score=76.59  Aligned_cols=104  Identities=16%  Similarity=0.093  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQL  481 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  481 (557)
                      .|..+.-++..|+|..|...|..-++..|++   +.+++.||.+++.  +|++++|...|..+.+-.|+.   |++++.+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~--qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA--QGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh--cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            6788888899999999999999999999987   6799999999999  999999999999999987765   7899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705          482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI  520 (557)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (557)
                      |.+...+|+.++|...|+++++       ..|....+..
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k-------~YP~t~aA~~  253 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIK-------RYPGTDAAKL  253 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH-------HCCCCHHHHH
Confidence            9999999999999999999999       5677665544

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.53  E-value=0.0013  Score=64.94  Aligned_cols=367  Identities=11%  Similarity=0.065  Sum_probs=227.7

Q ss_pred             HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHH
Q 008705          159 ISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD  238 (557)
Q Consensus       159 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  238 (557)
                      ..+...+..++...|..-..|-..|..-.+.|..+.++++|++++.--|.....|..+.....                 
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~-----------------  124 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK-----------------  124 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----------------
Confidence            445555666777778888889999999999999999999999999999998888877744322                 


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH-HHHHHH
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM-YSNVLY  314 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~~~~~~  314 (557)
                             -..|+.+.-...|+++......   +...|-..-..-..++++..-..+|+++++.--.....+.. +...+.
T Consensus       125 -------n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~  197 (577)
T KOG1258|consen  125 -------NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN  197 (577)
T ss_pred             -------ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence                   1223333333344444332221   11222222222344444555555555554432211111100 000000


Q ss_pred             h-----ccchhHHHHH-----------------------HHHHHhhCCCChhHHHHHH-------HHHhhhCchHHHHHH
Q 008705          315 A-----KECFSALSYL-----------------------AHRVFMTDKYRPESCCIIG-------NYYSLKGQHEKSVVY  359 (557)
Q Consensus       315 ~-----~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~  359 (557)
                      .     ....+++..+                       ...+....+.-.+....+.       .++.........+..
T Consensus       198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~  277 (577)
T KOG1258|consen  198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG  277 (577)
T ss_pred             cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence            0     0111111111                       1111111111111111111       222233334444455


Q ss_pred             HHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705          360 FRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS  431 (557)
Q Consensus       360 ~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  431 (557)
                      |+..++.        ++.....|..........|+++...-.|++++--.......|...+.-....|+.+-|-..+..+
T Consensus       278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~  357 (577)
T KOG1258|consen  278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA  357 (577)
T ss_pred             hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence            5555432        22334567778888889999999999999999888888999999999999999999999999988


Q ss_pred             HhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc
Q 008705          432 VFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER  510 (557)
Q Consensus       432 ~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (557)
                      .++. |..+.+...-+.+-..  .|++..|...+++..+..|+...+-...+....+.|+.+.+.. +............
T Consensus       358 ~~i~~k~~~~i~L~~a~f~e~--~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~  434 (577)
T KOG1258|consen  358 CKIHVKKTPIIHLLEARFEES--NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKE  434 (577)
T ss_pred             hhhcCCCCcHHHHHHHHHHHh--hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccccc
Confidence            8875 6667777777777777  9999999999999998889988888888888888999988884 2233321111111


Q ss_pred             CCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCchhh
Q 008705          511 EGPNMVEALIFLATHC-RAHGRFEEAEVYCTRLLDYTGPVSFT  552 (557)
Q Consensus       511 ~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~  552 (557)
                      ...-....+...++.. .-.++.+.|...+.+++++.|++...
T Consensus       435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~  477 (577)
T KOG1258|consen  435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL  477 (577)
T ss_pred             CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence            2222344555555554 44688999999999999999887654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.48  E-value=8.9e-06  Score=62.96  Aligned_cols=98  Identities=17%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHH
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS----RLWIAMAQCY  449 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~  449 (557)
                      +-..|....+.|+.+.|++.|.+++.+.|..+.+|.+.++.+..+|+.++|+..+++++++.....    .++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            334566777788888888888888888888888888888888888888888888888887754432    3567778888


Q ss_pred             hHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          450 ETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       450 ~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                      ..  .|+.+.|...|+.+-++...
T Consensus       126 Rl--~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RL--LGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HH--hCchHHHHHhHHHHHHhCCH
Confidence            88  88888888888887776544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.47  E-value=0.00021  Score=71.42  Aligned_cols=176  Identities=16%  Similarity=0.124  Sum_probs=102.3

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHH------HhcC----cCCH-HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRA------LKLD----KNYL-SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY  405 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~----p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  405 (557)
                      .+.+-..|.+|.+..++++|+++|++.      +++.    |... ..--..|.-+...|+++.|+..|-.+-..     
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-----  735 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-----  735 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-----
Confidence            345566788888888899999988753      3321    2111 11223466677788888888887655221     


Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                         ..-..+......+.+|+..+....... .-...|-.++.-|..  .|+|+-|.+.|.++-        ........|
T Consensus       736 ---~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan--~~dfe~ae~lf~e~~--------~~~dai~my  801 (1636)
T KOG3616|consen  736 ---IKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYAN--KGDFEIAEELFTEAD--------LFKDAIDMY  801 (1636)
T ss_pred             ---HHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhcc--chhHHHHHHHHHhcc--------hhHHHHHHH
Confidence               112233344566777777666543322 122345556677777  777877777776652        122233456


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC  539 (557)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  539 (557)
                      .+.|++++|.+.-+++..        .......|...+.-+.+.|+|.+|...|
T Consensus       802 ~k~~kw~da~kla~e~~~--------~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  802 GKAGKWEDAFKLAEECHG--------PEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             hccccHHHHHHHHHHhcC--------chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            677777777666655543        2233445555566666666666665554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.47  E-value=2.5e-06  Score=81.67  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH---HHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705          367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA---WYGLGQAYEMMHMPLYALHYFRKSVFL  434 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~  434 (557)
                      +|+++.+|+++|..+...|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44445555555555555555555555555555555554432   555555555555555555555555544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.45  E-value=1.8e-06  Score=82.56  Aligned_cols=70  Identities=20%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL---WIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      .+|+++.+|+++|.+|..+|++++|+..|+++++++|++..+   |+++|.+|..  +|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~--LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY--REEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhc
Confidence            578899999999999999999999999999999999999854   9999999999  999999999999999973

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=2.1e-05  Score=71.22  Aligned_cols=161  Identities=16%  Similarity=-0.003  Sum_probs=118.7

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHhHHh
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL-QPND---SRLWIAMAQCYETEQ  453 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~---~~~~~~l~~~~~~~~  453 (557)
                      +.+....|+..+|-..+.+.++-.|.+.-++..--.+++.+|+...-...+++.+-. +|+-   ..+.-.++.++..  
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E--  187 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE--  187 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH--
Confidence            445556788888888888888888888888877777888888888888888888766 5444   4455567777778  


Q ss_pred             cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHH
Q 008705          454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFE  533 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  533 (557)
                      .|-|++|.+.-++++++++.+..+...++.++...|++.++.+.+.+.-.....   ..---..-|...|.++...+.++
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---s~mlasHNyWH~Al~~iE~aeye  264 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---SWMLASHNYWHTALFHIEGAEYE  264 (491)
T ss_pred             hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---hhHHHhhhhHHHHHhhhcccchh
Confidence            888888888888888888888888888888888888888888887765441110   00011233555777888888888


Q ss_pred             HHHHHHHHHh
Q 008705          534 EAEVYCTRLL  543 (557)
Q Consensus       534 ~A~~~~~~al  543 (557)
                      .|.+.|.+-+
T Consensus       265 ~aleIyD~ei  274 (491)
T KOG2610|consen  265 KALEIYDREI  274 (491)
T ss_pred             HHHHHHHHHH
Confidence            8888886543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=9.9e-05  Score=64.74  Aligned_cols=145  Identities=12%  Similarity=0.050  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC------CCChHHHHHH
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN------PRDYRAWYGL  411 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l  411 (557)
                      +.+.+..++.-.|+|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|+++-+.+      .....+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            34456667777788888888888888777 5566677778888888888888888887554322      1234456677


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH---HHHHHHHHHH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLH  485 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~  485 (557)
                      +.+|...+++.+|...|.+++..+|.++.+.++.+.|+..  .|+..+|++.++.++...|...   .+.+++..+|
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            7788888888888888888888888888888888888888  8999999999998888888642   2444444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.43  E-value=6.8e-06  Score=63.58  Aligned_cols=93  Identities=20%  Similarity=0.123  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh----HHHHHHHHHH
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE----AIALNQLAKL  484 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~  484 (557)
                      -.-|.+....|+.+.|++.|.+++.+.|..+.+|++.+..+..  .|+.++|+..+++++++....    ..++...|.+
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL--q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL--QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH--cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            3445555666666666666666666666666666666666666  666666666666666654322    2255566666


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 008705          485 HHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~  503 (557)
                      |..+|+.+.|..-|+.+.+
T Consensus       125 yRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHHhCchHHHHHhHHHHHH
Confidence            6666666666666666665

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=0.00034  Score=61.49  Aligned_cols=145  Identities=18%  Similarity=0.162  Sum_probs=123.0

Q ss_pred             chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHH
Q 008705          352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRK  430 (557)
Q Consensus       352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  430 (557)
                      ..+..+..+++-+      ..+.+.+..++.-.|.|.-.+..+.+.++.+ |.++.....||.+-.+.|+.+.|..+|++
T Consensus       164 ~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~  237 (366)
T KOG2796|consen  164 AEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD  237 (366)
T ss_pred             chhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            3355666666544      3466778889999999999999999999988 66788889999999999999999999996


Q ss_pred             HHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          431 SVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       431 a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      .-+..      .....+..+.+.++.-  .+++.+|...|.+++..+|.++.+.++.|.|+.-.|+..+|++.++.++.+
T Consensus       238 vek~~~kL~~~q~~~~V~~n~a~i~lg--~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  238 VEKVTQKLDGLQGKIMVLMNSAFLHLG--QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             HHHHHhhhhccchhHHHHhhhhhheec--ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            54332      2234566778888888  999999999999999999999999999999999999999999999999983

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.40  E-value=2.7e-06  Score=70.47  Aligned_cols=88  Identities=26%  Similarity=0.312  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC----------chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC--
Q 008705          353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN----------TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM--  420 (557)
Q Consensus       353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--  420 (557)
                      |+.|.+.++.....+|.+.+.++.-|..+.++.+          +++|+.-|++|+.++|+...+++++|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5677777777778888888888887777766533          4567777777777888888888888877765542  


Q ss_pred             ---------hHHHHHHHHHHHhcCCCCHH
Q 008705          421 ---------PLYALHYFRKSVFLQPNDSR  440 (557)
Q Consensus       421 ---------~~~A~~~~~~a~~~~p~~~~  440 (557)
                               |++|..+|+++...+|++..
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                     34455555555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.39  E-value=3.6e-06  Score=69.78  Aligned_cols=95  Identities=19%  Similarity=0.239  Sum_probs=74.5

Q ss_pred             chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC-
Q 008705          387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----------MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH-  455 (557)
Q Consensus       387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-  455 (557)
                      ++.|.+.++.....+|.+.+.+++.|.++..+.          .+++|+.-|++++.++|+..+++..+|.+|..  .+ 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts--~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS--LAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH--HHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HHh
Confidence            678999999999999999999999998887653          45678888999999999999999999999976  43 


Q ss_pred             ----------cHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008705          456 ----------MLEEAIKCYRRAANCNDSEAIALNQLAK  483 (557)
Q Consensus       456 ----------~~~~A~~~~~~al~~~p~~~~~~~~la~  483 (557)
                                .|++|..+|++|...+|++......|..
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                      4788999999999999998765554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.38  E-value=0.0024  Score=60.69  Aligned_cols=422  Identities=11%  Similarity=0.080  Sum_probs=256.0

Q ss_pred             ccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHH
Q 008705           85 EDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERE  164 (557)
Q Consensus        85 ~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (557)
                      +.|..-...|.|-.-|-.++.+++-.+++++..++-|.+-+....|+.|+...                  +++...+.-
T Consensus        37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~------------------~df~svE~l   98 (660)
T COG5107          37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR------------------KDFRSVESL   98 (660)
T ss_pred             cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh------------------hhHHHHHHH
Confidence            45667788899999999999999999999999999998888888899886322                  112222222


Q ss_pred             HhhhhcCCCCChhHHHHHHHHHHhcC---------ChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhH
Q 008705          165 LSTSWKNGTVDPFGLYLYGIVLKDKG---------NENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHW  235 (557)
Q Consensus       165 l~~~~~~~~~~~~~~~~~g~~~~~~g---------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~  235 (557)
                      +.+-++. ..+..+|.++-..-.+.+         ..-+|.+.--..+-.+|.....|.+.+........+..       
T Consensus        99 f~rCL~k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-------  170 (660)
T COG5107          99 FGRCLKK-SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-------  170 (660)
T ss_pred             HHHHHhh-hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-------
Confidence            2221111 222333333332222222         12233333333344678887788777655443222111       


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHH-HHH---------HHHHHHH----hcccHHHHHHHHHHHHHh---
Q 008705          236 MKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNY-IQA---------QIAKAQY----SLREFEQVEVIFEELLRN---  298 (557)
Q Consensus       236 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~---------~la~~~~----~~g~~~~A~~~~~~~l~~---  298 (557)
                               ..++.+.+.-...|.+++..--.+.+ .|.         ..+.+--    ..--|-.|...++++..+   
T Consensus       171 ---------wEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G  241 (660)
T COG5107         171 ---------WEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG  241 (660)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc
Confidence                     12344455555666666553222211 110         1111111    111244555555555443   


Q ss_pred             ----CCCCCCc---------HHHHHHHHHhcc---------chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHH
Q 008705          299 ----DPYRVDD---------MDMYSNVLYAKE---------CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKS  356 (557)
Q Consensus       299 ----~p~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  356 (557)
                          +|-+...         -..+-.+-+.+.         ..+......++++..-+..+++|+....+....++-++|
T Consensus       242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a  321 (660)
T COG5107         242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA  321 (660)
T ss_pred             ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence                1111100         011112222221         123455566778888899999999999999999999999


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh------------------CCCC------------hH
Q 008705          357 VVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI------------------NPRD------------YR  406 (557)
Q Consensus       357 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~p~~------------~~  406 (557)
                      +...++++...|.   ....++..|-..++.++-..+|+++.+.                  +|..            .-
T Consensus       322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~  398 (660)
T COG5107         322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTF  398 (660)
T ss_pred             HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhh
Confidence            9999988776665   5556666666666655555556555431                  1100            12


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                      +|..+-..-.+..-.+.|...|-++-+..-....++..-|.+ +..  .|++.-|-..|+-.+...|+++......-..+
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~--~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL  476 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA--TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL  476 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh--cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            233333333444556778888888766542333333333322 233  79999999999999999999988888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ...++-..|...|++++.++..     .....+|-.+......-|+...+...=++...+-|+.+.
T Consensus       477 i~inde~naraLFetsv~r~~~-----~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~  537 (660)
T COG5107         477 IRINDEENARALFETSVERLEK-----TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL  537 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHHHHH-----hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence            8999999999999999986543     244667888888888899999998888888888777644

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=3.3e-05  Score=66.43  Aligned_cols=138  Identities=17%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR------LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIA  477 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~  477 (557)
                      ..+.+|. ..++++|+.++++++++..+-.+      .+..+|.+|.. .+.++++|+.+|+++-+....+      ...
T Consensus        79 eA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs-dl~d~ekaI~~YE~Aae~yk~ees~ssANKC  156 (288)
T KOG1586|consen   79 EAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES-DLQDFEKAIAHYEQAAEYYKGEESVSSANKC  156 (288)
T ss_pred             HHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh-hHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence            3334443 33666677777666666543322      34467777765 1477888888888876653322      225


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      +...|..-...++|.+|+..|++....--...-..-..-..++.-|.|++-..+.-.+...+++-.+++|.-
T Consensus       157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            666677777788888888888887762110000011122344556777777788888888888888877653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.38  E-value=0.0026  Score=63.95  Aligned_cols=321  Identities=13%  Similarity=0.087  Sum_probs=152.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHH-HHHHHHHHHHHhhhHHHH
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMK-DYFLASAYQELRMHKESL  255 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~-~~~la~~~~~~~~~~~A~  255 (557)
                      .++-.-|.++.+..++++|+++|++--.     ..--..|++          +.+|..... .---|.-+...|+++.|+
T Consensus       662 elydkagdlfeki~d~dkale~fkkgda-----f~kaielar----------fafp~evv~lee~wg~hl~~~~q~daai  726 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDA-----FGKAIELAR----------FAFPEEVVKLEEAWGDHLEQIGQLDAAI  726 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccH-----HHHHHHHHH----------hhCcHHHhhHHHHHhHHHHHHHhHHHHH
Confidence            4455556667777777777777765311     000111211          112211111 011255666777777777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCC
Q 008705          256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKY  335 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (557)
                      ..|-.+-.        ......+.....+|.+|+.+++.+..... ....+-..+..+...++++.+..++..+      
T Consensus       727 nhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~------  791 (1636)
T KOG3616|consen  727 NHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA------  791 (1636)
T ss_pred             HHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc------
Confidence            77665521        12222334455667777766665544322 1222334445555556666655554431      


Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-HHHHHHhHHHHhc-------------CCchHHHHHHHHH----
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-SAWTLMGHEYVEM-------------KNTPAAIDAYRRA----  397 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~-------------~~~~~A~~~~~~a----  397 (557)
                        .........|-+.|+|+.|.+.-.+..  .|... ..|...+.-+-+.             |.++.|+..|.+.    
T Consensus       792 --~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~d  867 (1636)
T KOG3616|consen  792 --DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDD  867 (1636)
T ss_pred             --chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcch
Confidence              112223344555666666655554442  22221 2233333333333             3344444444432    


Q ss_pred             --Hh----hCCCC-hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705          398 --VD----INPRD-YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC  470 (557)
Q Consensus       398 --l~----~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~  470 (557)
                        +.    ..|+. ......+|.-+...|+...|...|-++-.        |..-...|..  .+.+++|-+.-+.   .
T Consensus       868 dmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~--s~lw~dayriakt---e  934 (1636)
T KOG3616|consen  868 DMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKA--SELWEDAYRIAKT---E  934 (1636)
T ss_pred             HHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhh--hhhHHHHHHHHhc---c
Confidence              11    11221 34566677777778888888777766532        1122223333  4444444332211   1


Q ss_pred             CCChHH--HHHH---------HHHHHHHcCCHHHHHHH------HHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHH
Q 008705          471 NDSEAI--ALNQ---------LAKLHHALGRDEEAAFY------YKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFE  533 (557)
Q Consensus       471 ~p~~~~--~~~~---------la~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  533 (557)
                      ...+..  +.+.         ...++-+.|-.+.|+..      |+-+.+.. . .......+.++..++..+...|+++
T Consensus       935 gg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdla-r-i~~k~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen  935 GGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLA-R-IAAKDKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred             ccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHH-H-HhhhccCccchhHHhhhhhhccchh
Confidence            111110  0000         11223333433333332      11111100 0 0012345678889999999999999


Q ss_pred             HHHHHHHHHhccC
Q 008705          534 EAEVYCTRLLDYT  546 (557)
Q Consensus       534 ~A~~~~~~al~~~  546 (557)
                      +|-+.|-.+++++
T Consensus      1013 daskhyveaikln 1025 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLN 1025 (1636)
T ss_pred             hhhHhhHHHhhcc
Confidence            9999999999886

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.35  E-value=8.7e-07  Score=65.23  Aligned_cols=64  Identities=33%  Similarity=0.476  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS---EAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      ..++..+|.+|..  .|++++|+.+|++++.+    .+.   ...++.++|.++..+|++++|+.+++++++.
T Consensus         5 a~~~~~la~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRE--LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566677777777  77777777777777654    112   2446777777777777777777777777763

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.35  E-value=0.00043  Score=69.74  Aligned_cols=161  Identities=19%  Similarity=0.057  Sum_probs=116.1

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCC-hHH-----HHHHHHH-HH----HhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRD-YRA-----WYGLGQA-YE----MMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~-----~~~l~~~-~~----~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      -.+.--.|+-+.+++.+.++.+...-. +-+     ++..+.. +.    .....+.|...+....+..|+..-..+..|
T Consensus       195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g  274 (468)
T PF10300_consen  195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG  274 (468)
T ss_pred             HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            334445688888888888887622111 111     1111111 11    244567889999999999999988889999


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH
Q 008705          447 QCYETEQLHMLEEAIKCYRRAANCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL  522 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  522 (557)
                      .++..  .|+.++|++.|++++.....-    ...++.+|+++..+++|++|..+|.+..+.      ..-...-..+..
T Consensus       275 R~~~~--~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~Y~~  346 (468)
T PF10300_consen  275 RLERL--KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYAYLA  346 (468)
T ss_pred             HHHHH--hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHHHHH
Confidence            99999  999999999999887543322    337888999999999999999999998872      334455566677


Q ss_pred             HHHHHHcCCH-------HHHHHHHHHHhccC
Q 008705          523 ATHCRAHGRF-------EEAEVYCTRLLDYT  546 (557)
Q Consensus       523 a~~~~~~g~~-------~~A~~~~~~al~~~  546 (557)
                      |-|+...|+.       ++|.++|.++-.+.
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            8889999988       88888888876553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.34  E-value=0.0031  Score=60.13  Aligned_cols=408  Identities=12%  Similarity=0.086  Sum_probs=205.2

Q ss_pred             HHHhhhhhhHHHHHHHHhhhcCC---chhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCC
Q 008705           97 AKSYFDCREYRRAAHVLRDQTGR---RSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGT  173 (557)
Q Consensus        97 a~~~~~~~~y~~A~~~l~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~  173 (557)
                      |-++-++|++.+|..+|.++-+.   .+..+.-  -.+.|   +.-.+           -...+++.....+..+.+..|
T Consensus        13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lke--Evl~g---rilnA-----------ffl~nld~Me~~l~~l~~~~~   76 (549)
T PF07079_consen   13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKE--EVLGG---RILNA-----------FFLNNLDLMEKQLMELRQQFG   76 (549)
T ss_pred             hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH--HHHhh---HHHHH-----------HHHhhHHHHHHHHHHHHHhcC
Confidence            77888999999999999987542   2221110  00111   11111           122344555555666666778


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      ..++...-.|...++.|.+.+|++.+..-...-......|....     ..     ..-+++......++++...|++.+
T Consensus        77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----i~-----~l~~df~l~~i~a~sLIe~g~f~E  146 (549)
T PF07079_consen   77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----IQ-----QLFSDFFLDEIEAHSLIETGRFSE  146 (549)
T ss_pred             CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----HH-----HHhhHHHHHHHHHHHHHhcCCcch
Confidence            99999999999999999999999988766554333333333220     00     011233344457999999999999


Q ss_pred             HHHHHHHHHhc-CC----CCHHHH----HHHHHHHHhc----c-------cHHHHHHHHHHHHHhCC--CC--CCc---H
Q 008705          254 SLTKYEYLQGT-FS----FSNYIQ----AQIAKAQYSL----R-------EFEQVEVIFEELLRNDP--YR--VDD---M  306 (557)
Q Consensus       254 A~~~~~~~l~~-~p----~~~~~~----~~la~~~~~~----g-------~~~~A~~~~~~~l~~~p--~~--~~~---~  306 (557)
                      +..++++.+.. .|    -+.+.+    ..+|+.|+-.    .       -|+.+.-+.+++-..+.  ..  ...   .
T Consensus       147 gR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~  226 (549)
T PF07079_consen  147 GRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELF  226 (549)
T ss_pred             HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHH
Confidence            99999998763 33    233333    2445544321    1       13333333333322221  00  000   0


Q ss_pred             HHHHHHHH---------------------h---------------ccchhHHHHHHHHHHhhC--CCChhHHHHHHH---
Q 008705          307 DMYSNVLY---------------------A---------------KECFSALSYLAHRVFMTD--KYRPESCCIIGN---  345 (557)
Q Consensus       307 ~~~~~~~~---------------------~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~---  345 (557)
                      ..+...++                     .               ..+.+++..+++.+....  +-..+.-...|.   
T Consensus       227 s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls  306 (549)
T PF07079_consen  227 STIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS  306 (549)
T ss_pred             HHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            00000000                     0               011122222222211110  000000111111   


Q ss_pred             HHhhhCchHHHHHHHHHHHhcCcCCHHHHHH------HhHHHH-hcC---CchHHHHHHHHHHhhCCCC---hHHHHHHH
Q 008705          346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTL------MGHEYV-EMK---NTPAAIDAYRRAVDINPRD---YRAWYGLG  412 (557)
Q Consensus       346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------l~~~~~-~~~---~~~~A~~~~~~al~~~p~~---~~~~~~l~  412 (557)
                      ...+.++..+|..++.-...++|+.....-.      +-.+.. ...   +...=+..++.+-..+-+.   ...+..-|
T Consensus       307 ~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A  386 (549)
T PF07079_consen  307 FKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA  386 (549)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            1223455555555555555555554311110      001111 000   0111112222222222211   12223344


Q ss_pred             HHHHHhCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHH--HHHHHHh---------cCC---ChHHH
Q 008705          413 QAYEMMHM-PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK--CYRRAAN---------CND---SEAIA  477 (557)
Q Consensus       413 ~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~--~~~~al~---------~~p---~~~~~  477 (557)
                      .-+...|. -++|+..++.+++..|.|..+-+..-...    ...|.+|+.  .+-+.+.         +.|   .+.+.
T Consensus       387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv----Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei  462 (549)
T PF07079_consen  387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV----KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI  462 (549)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence            55556666 78889999998888888765433222111    122333321  1112211         122   23344


Q ss_pred             HHHHH--HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          478 LNQLA--KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       478 ~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      -+.|+  ..++..|++.++.-+-.=..+       ..| .+.++..+|.+.....+|++|..++...
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~-------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTK-------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHH-------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            44444  446788999999877666666       677 8999999999999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.0002  Score=65.11  Aligned_cols=160  Identities=9%  Similarity=-0.035  Sum_probs=113.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCCCcHHHHHHHHHhccchh
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN-DPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      +.+....|++.+|-...+++++.+|.+.-++..--.+++..|+.+.-...+++++-. +|+-+                 
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-----------------  172 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-----------------  172 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-----------------
Confidence            556677888888888999999999988888877778888889988888888888765 44321                 


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI  400 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  400 (557)
                                    -...+.-.++..+...|-+++|.+.-+++++++|.+..+....++++...|++.++.++..+.-..
T Consensus       173 --------------~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~  238 (491)
T KOG2610|consen  173 --------------CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD  238 (491)
T ss_pred             --------------HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence                          112223345556667788888888888888888888878788888888888888887776654332


Q ss_pred             CCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705          401 NPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSV  432 (557)
Q Consensus       401 ~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~  432 (557)
                      -...    ..-|..-+..+..-+.++.|+..|.+-+
T Consensus       239 Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  239 WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            2111    1123345666677778888888887644

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=6.2e-05  Score=65.27  Aligned_cols=197  Identities=14%  Similarity=0.065  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhC-----CCCh
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-----PRDY  405 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~  405 (557)
                      ...+..-+..|...+++++|..++.++.+-..++.      .++-..+.+..++..+.++..+|+++..+.     |+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            44556666777777777877777777775433332      223445556666677777777777776542     2222


Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC----CChH
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCN----DSEA  475 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~  475 (557)
                      ..-...+--.....++++|+.+|++++.+-..+.      +.+...+.++.+  ..++++|-..+.+-....    ....
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr--l~kf~Eaa~a~lKe~~~~~~~~~y~~  188 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR--LEKFTEAATAFLKEGVAADKCDAYNS  188 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh--hHHhhHHHHHHHHhhhHHHHHhhccc
Confidence            2222233333445566667777776666543331      233445556666  666666666665543321    1111


Q ss_pred             H--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          476 I--ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC  539 (557)
Q Consensus       476 ~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  539 (557)
                      .  .+.....+|.-..+|..|..+++..-+.   .....+++..+..+|-..|- .|+.+++...+
T Consensus       189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi---p~f~~sed~r~lenLL~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQI---PAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcchhcC---ccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            1  2333333344444666666666665541   11123445555555544433 45555554443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00019  Score=62.33  Aligned_cols=199  Identities=15%  Similarity=0.115  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh
Q 008705          270 YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL  349 (557)
Q Consensus       270 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  349 (557)
                      ..+...+.++...++|++|...+.++.+-..++...++.                            +..+-..+.....
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA----------------------------AKayEqaamLake   83 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA----------------------------AKAYEQAAMLAKE   83 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH----------------------------HHHHHHHHHHHHH
Confidence            344555677777788888888888887655443322211                            1112223333334


Q ss_pred             hCchHHHHHHHHHHHhcC-----cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHh
Q 008705          350 KGQHEKSVVYFRRALKLD-----KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMM  418 (557)
Q Consensus       350 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~  418 (557)
                      ...+.++..+|+++..+.     |+....-...+--..+..++++|+.+|++++.+-..+      .+.+...+.++.+.
T Consensus        84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen   84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence            455555555555555442     2222222333334457778999999999988764433      44556678889999


Q ss_pred             CChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHc
Q 008705          419 HMPLYALHYFRKSVFL------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       419 ~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~  488 (557)
                      .++.+|-..+.+-...      .++....+.....++..  ..+|..|.++++...++    .|.+..++.+|-..| ..
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~--~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~  240 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY--AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE  240 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh--HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence            9999988888765432      23334455666666666  78999999999997776    345566777766655 45


Q ss_pred             CCHHHHHHHHH
Q 008705          489 GRDEEAAFYYK  499 (557)
Q Consensus       489 g~~~~A~~~~~  499 (557)
                      |+.++....+.
T Consensus       241 gD~E~~~kvl~  251 (308)
T KOG1585|consen  241 GDIEEIKKVLS  251 (308)
T ss_pred             CCHHHHHHHHc
Confidence            67777665543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.28  E-value=7.1e-05  Score=72.81  Aligned_cols=128  Identities=9%  Similarity=0.032  Sum_probs=97.5

Q ss_pred             HHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHH
Q 008705          161 LERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF  240 (557)
Q Consensus       161 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~  240 (557)
                      +..-+....+..+.+...+..-+..+...|+..+|..++..++...|....-...                       .-
T Consensus       198 ~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~l-----------------------LS  254 (886)
T KOG4507|consen  198 IGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIAL-----------------------LS  254 (886)
T ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchh-----------------------hh
Confidence            3334444555677777777777777788999999999999999988765432221                       24


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN  311 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  311 (557)
                      +|.++.+.|...+|--++..++.-.|....-++.++.++.+.|++......|..+.+.+|..........+
T Consensus       255 laTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~  325 (886)
T KOG4507|consen  255 LATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKH  325 (886)
T ss_pred             HHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHH
Confidence            58889999999988888888887766666668889999999999999999999999988877665544433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.00044  Score=59.71  Aligned_cols=159  Identities=15%  Similarity=0.154  Sum_probs=113.8

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcC----c-C-CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHH
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLD----K-N-YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWY  409 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~----p-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  409 (557)
                      .-|+.|....++..|-..|.++-+..    . . ....+...+.+| +..++++|+.++++++++..+-      ...+.
T Consensus        39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~  117 (288)
T KOG1586|consen   39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI  117 (288)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence            36677777777777777777765542    1 1 233455555555 4459999999999999987654      33456


Q ss_pred             HHHHHHHHh-CChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH-------
Q 008705          410 GLGQAYEMM-HMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA-------  475 (557)
Q Consensus       410 ~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------  475 (557)
                      .+|.+|..- .++++|+.+|+++-+....+      ..++...+..-..  .++|.+|+..|+++....-+++       
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~--leqY~~Ai~iyeqva~~s~~n~LLKys~K  195 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ--LEQYSKAIDIYEQVARSSLDNNLLKYSAK  195 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence            789998776 89999999999998765432      2355566666666  9999999999999877654443       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          476 IALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ..++.-|.|+.-..+.-.+...+++..+
T Consensus       196 dyflkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  196 DYFLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            2456677788887888888888887777

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.26  E-value=0.0063  Score=60.40  Aligned_cols=311  Identities=13%  Similarity=0.116  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHH
Q 008705          193 NLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQ  272 (557)
Q Consensus       193 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  272 (557)
                      +.+...|...+...|.....|...                         |..-.+.|..+.++++|++.+.-.|.+...|
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kf-------------------------A~~E~klg~~~~s~~Vfergv~aip~SvdlW  116 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKF-------------------------ADYEYKLGNAENSVKVFERGVQAIPLSVDLW  116 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHH-------------------------HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence            667778888899999999888777                         8888899999999999999999999998888


Q ss_pred             HHHHH-HHHhcccHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705          273 AQIAK-AQYSLREFEQVEVIFEELLRNDPYR---VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS  348 (557)
Q Consensus       273 ~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  348 (557)
                      ...-. +--..|+.+.-...|+++......+   ...|+.+......++.......++.+.+......-..++..=.-+.
T Consensus       117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l  196 (577)
T KOG1258|consen  117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLL  196 (577)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH
Confidence            65543 3445688888888999998865543   3456667777777778888888887777655433322222111111


Q ss_pred             hh------CchHHHHHHHHHHHh-----------------------cCcCCHHHHHHHh-------HHHHhcCCchHHHH
Q 008705          349 LK------GQHEKSVVYFRRALK-----------------------LDKNYLSAWTLMG-------HEYVEMKNTPAAID  392 (557)
Q Consensus       349 ~~------g~~~~A~~~~~~al~-----------------------~~p~~~~~~~~l~-------~~~~~~~~~~~A~~  392 (557)
                      ..      -..++++..-.....                       ..+.....-..+.       .++.......+.+-
T Consensus       197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~  276 (577)
T KOG1258|consen  197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW  276 (577)
T ss_pred             hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence            11      111222111111110                       0011111111111       12222223334444


Q ss_pred             HHHHHHhh-----CC---CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHH
Q 008705          393 AYRRAVDI-----NP---RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY  464 (557)
Q Consensus       393 ~~~~al~~-----~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~  464 (557)
                      .++..+..     .|   .....|......-...|+++...-.|++++--.......|...+.....  .|+.+-|...+
T Consensus       277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~--~~~~~~~~~~~  354 (577)
T KOG1258|consen  277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES--SGDVSLANNVL  354 (577)
T ss_pred             hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH--cCchhHHHHHH
Confidence            44444431     22   2355677777778889999999999999998888889999999999999  99999999988


Q ss_pred             HHHHhc-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 008705          465 RRAANC-NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV  537 (557)
Q Consensus       465 ~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  537 (557)
                      .++.++ .|..+.+...-+..-...|++..|...++++.+       ..|+...+-...+.+..+.|+.+.+..
T Consensus       355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~-------e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES-------EYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh-------hCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            888876 466678888888888999999999999999998       449999998999999999999999983

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.26  E-value=8.3e-05  Score=71.52  Aligned_cols=97  Identities=14%  Similarity=0.077  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-CCChHHHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-NDSEAIALNQL  481 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l  481 (557)
                      ..+...+|.+..++|+.++|++.++..++..|.  +-.+..++..++..  .+.|.++...+.+--++ -|+...+.+.-
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe--lq~Yad~q~lL~kYdDi~lpkSAti~YTa  336 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE--LQAYADVQALLAKYDDISLPKSATICYTA  336 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh--cCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence            344577999999999999999999999988775  35588899999999  99999999999886443 35666666665


Q ss_pred             HHHHHH-cCC---------------HHHHHHHHHHHHH
Q 008705          482 AKLHHA-LGR---------------DEEAAFYYKKDLE  503 (557)
Q Consensus       482 a~~~~~-~g~---------------~~~A~~~~~~al~  503 (557)
                      |.+-.+ .++               -..|.+.+.+|++
T Consensus       337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve  374 (539)
T PF04184_consen  337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE  374 (539)
T ss_pred             HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH
Confidence            554433 122               1346677888887

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.23  E-value=5.1e-05  Score=71.03  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=109.5

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE-MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      +|+.+.+...+.+..+.|...|.+|.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            567777888888889999999999987666678888888888666 5666669999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      .|+.+.|..+|++++..-|...   .+|......-..  .|+.+...++.+++.+..|.+..
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~--~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK--YGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999998876654   578888888888  89999999999998888776443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.1e-05  Score=69.59  Aligned_cols=93  Identities=19%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP  421 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  421 (557)
                      .-|+.++....|..|+.+|.+++.++|..+..|.+.+.++++.++++.+....++++++.|+....++.+|........+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            35777888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 008705          422 LYALHYFRKSVFL  434 (557)
Q Consensus       422 ~~A~~~~~~a~~~  434 (557)
                      ++|+..++++..+
T Consensus        95 ~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   95 DEAIKVLQRAYSL  107 (284)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999999665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.20  E-value=0.00021  Score=68.82  Aligned_cols=131  Identities=15%  Similarity=0.066  Sum_probs=90.6

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQC  448 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~  448 (557)
                      .+...+|.+..+.|+.++|++.++..++.+|.  +..+..+|..++..++.+.++...+.+.-++. |.++...+.-+.+
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            44567899999999999999999999988775  46688999999999999999999998865442 5555544444433


Q ss_pred             HhHH-----------hcCc---HHHHHHHHHHHHhcCCChHHHHHHHHH------HHHHcCCHHHHHHHHHHHHH
Q 008705          449 YETE-----------QLHM---LEEAIKCYRRAANCNDSEAIALNQLAK------LHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       449 ~~~~-----------~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~------~~~~~g~~~~A~~~~~~al~  503 (557)
                      -.+.           +.|-   -..|++.+.+|++.+|..+..+..+-.      -..+.|+ .||+.|---.+.
T Consensus       340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~  413 (539)
T PF04184_consen  340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQ  413 (539)
T ss_pred             HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHH
Confidence            3220           0121   234778999999999988775544322      1334454 666666555554

The molecular function of this protein is uncertain.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0082  Score=57.75  Aligned_cols=413  Identities=12%  Similarity=0.048  Sum_probs=222.7

Q ss_pred             hhHHHHHHHhhhhh--hHHHHHHHHhhhcCCchhh-HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705           91 SDFYLLAKSYFDCR--EYRRAAHVLRDQTGRRSVF-LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST  167 (557)
Q Consensus        91 ~~~~~la~~~~~~~--~y~~A~~~l~~~~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  167 (557)
                      ....-+|..+-..|  +...|++.++......+.+ ....+..-.|.      .. +        ...++++.+...|++
T Consensus         8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~------lL-~--------~yT~N~elAksHLek   72 (629)
T KOG2300|consen    8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGA------LL-L--------RYTKNVELAKSHLEK   72 (629)
T ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHH------HH-H--------HHhccHHHHHHHHHH
Confidence            45566788888888  8999999999876644333 22222222221      00 0        011122222233322


Q ss_pred             hh---cCCCC----ChhHHHHHHHHHHhcC-ChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHH
Q 008705          168 SW---KNGTV----DPFGLYLYGIVLKDKG-NENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDY  239 (557)
Q Consensus       168 ~~---~~~~~----~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~  239 (557)
                      ..   +.-|.    .-.+.-+++.++.+.. .+..|...++++++....++ .|..-                    ..+
T Consensus        73 A~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p-~wsck--------------------llf  131 (629)
T KOG2300|consen   73 AWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP-YWSCK--------------------LLF  131 (629)
T ss_pred             HHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc-hhhHH--------------------HHH
Confidence            11   11121    2345667888888777 89999999999999776655 33321                    123


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhc-CCCC-H--HHHHH--HHHHHHhc---ccHHHHHHHHHHHHHhCCCCCCcHHHH-
Q 008705          240 FLASAYQELRMHKESLTKYEYLQGT-FSFS-N--YIQAQ--IAKAQYSL---REFEQVEVIFEELLRNDPYRVDDMDMY-  309 (557)
Q Consensus       240 ~la~~~~~~~~~~~A~~~~~~~l~~-~p~~-~--~~~~~--la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~-  309 (557)
                      .++....-..++..|++.+.--.+. ++.. +  .+.+.  .+.++...   .+...+.....++.+....++.-...+ 
T Consensus       132 QLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk  211 (629)
T KOG2300|consen  132 QLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK  211 (629)
T ss_pred             HHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence            4566666667777776664322211 1111 1  11111  22222222   223344444444444333322211111 


Q ss_pred             ------HHHHH-hccchhHHHHHHHHH----HhhCCC------------ChhH--H------HHHH-----HHHhhhCch
Q 008705          310 ------SNVLY-AKECFSALSYLAHRV----FMTDKY------------RPES--C------CIIG-----NYYSLKGQH  353 (557)
Q Consensus       310 ------~~~~~-~~~~~~~~~~~~~~~----~~~~~~------------~~~~--~------~~la-----~~~~~~g~~  353 (557)
                            ...++ ..|+........+++    ..+.+.            .+..  |      +.+.     ..-...|-+
T Consensus       212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~  291 (629)
T KOG2300|consen  212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF  291 (629)
T ss_pred             HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Confidence                  11111 123332222222211    111110            1110  0      1111     111235667


Q ss_pred             HHHHHHHHHHHhcCcC------CHHH--------HHHHhHHHHhcCCchHHHHHHHHHHhhC---CC-------ChHHHH
Q 008705          354 EKSVVYFRRALKLDKN------YLSA--------WTLMGHEYVEMKNTPAAIDAYRRAVDIN---PR-------DYRAWY  409 (557)
Q Consensus       354 ~~A~~~~~~al~~~p~------~~~~--------~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~  409 (557)
                      ++|.++-++++.....      ....        +-.+..+-.-.|++.+|++....+.+..   |.       .+...+
T Consensus       292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~  371 (629)
T KOG2300|consen  292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM  371 (629)
T ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Confidence            7777777777654211      1111        2345556667889999988887776643   33       245667


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh----------HH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPN-D--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE----------AI  476 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~--~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~  476 (557)
                      .+|......+.++.|...|..+.+.-.. +  ..+-.++|..|..  .|+-+.-.+.++..   .|.+          ..
T Consensus       372 LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~--~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~  446 (629)
T KOG2300|consen  372 LLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR--IGDAEDLYKALDLI---GPLNTNSLSSQRLEAS  446 (629)
T ss_pred             HHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH--hccHHHHHHHHHhc---CCCCCCcchHHHHHHH
Confidence            7788778888899999999988876432 2  2244678888888  77766554444433   3331          34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      +++..|...+.++++.||...+.+.++.. +......-..-.+..|+.+....|+..++.+..+-++++
T Consensus       447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql  514 (629)
T KOG2300|consen  447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL  514 (629)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence            67777888888999999999999988832 111111223445666888888889999888887777665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.16  E-value=5.4e-05  Score=70.87  Aligned_cols=129  Identities=16%  Similarity=0.196  Sum_probs=83.5

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM-MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      +|..+.....+.+..+.|...|.+|.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            456666666666667777777777775555566777777777555 4444447777777777777777777777777777


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                        .|+.+.|..+|++++..-|...   .+|......-...|+.+....+.+++.+
T Consensus        83 --~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   83 --LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             --TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             --hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              7777777777777776655544   3566666666666776666666666666

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.15  E-value=5.7e-06  Score=52.74  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKS  218 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  218 (557)
                      |.+++.+|..+...|++++|++.|+++++.+|++..+|..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4678999999999999999999999999999999999988743

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.12  E-value=0.0033  Score=60.00  Aligned_cols=32  Identities=13%  Similarity=0.006  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      ....++.+..-  .|++++|++.+++++...|..
T Consensus       307 d~ATl~Ea~vL--~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  307 DVATLLEASVL--AGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHHHHHHH--cCCHHHHHHHHHHHhhcCCcc
Confidence            33445555555  666666666666666665544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.11  E-value=0.012  Score=57.62  Aligned_cols=219  Identities=11%  Similarity=0.048  Sum_probs=156.8

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHhhhCc--------------hHHHHHHHHHHHhcCc-CCHHHHHHHhHHHHhcC-
Q 008705          322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ--------------HEKSVVYFRRALKLDK-NYLSAWTLMGHEYVEMK-  385 (557)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~-  385 (557)
                      .....++++..-+..|++|+..+.++...++              .+++..+|++++..-- .+...++.++..--..- 
T Consensus       264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~  343 (656)
T KOG1914|consen  264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD  343 (656)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence            3455667777788899999888777777666              6788888888876432 23344444444322222 


Q ss_pred             --CchHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcHHHHH
Q 008705          386 --NTPAAIDAYRRAVDINPRDY-RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHMLEEAI  461 (557)
Q Consensus       386 --~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~~~A~  461 (557)
                        ..+.-...+.+++.+...++ -+|..+-..-.+..-...|...|.++-+..-....++..-|.+ |..  .++..-|.
T Consensus       344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c--skD~~~Af  421 (656)
T KOG1914|consen  344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC--SKDKETAF  421 (656)
T ss_pred             cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh--cCChhHHH
Confidence              36667778888877654443 3455566666666677888999998876543332333333332 223  79999999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705          462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG-PNMVEALIFLATHCRAHGRFEEAEVYCT  540 (557)
Q Consensus       462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~  540 (557)
                      +.|+-.+...++.+..-......+...++-..|...|++++..     ... .....+|..+-.....-|+...+++.-+
T Consensus       422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-----~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek  496 (656)
T KOG1914|consen  422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-----VLSADKSKEIWDRMLEYESNVGDLNSILKLEK  496 (656)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-----cCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            9999999999999999889999999999999999999999982     012 2345788888888899999999998887


Q ss_pred             HHhccCC
Q 008705          541 RLLDYTG  547 (557)
Q Consensus       541 ~al~~~~  547 (557)
                      +-....|
T Consensus       497 R~~~af~  503 (656)
T KOG1914|consen  497 RRFTAFP  503 (656)
T ss_pred             HHHHhcc
Confidence            7766655

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2.1e-05  Score=67.84  Aligned_cols=93  Identities=24%  Similarity=0.176  Sum_probs=83.9

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  455 (557)
                      .-|..++..++|..|+.+|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+.....+.+|.+...  ..
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~--s~   92 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ--SK   92 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh--hc
Confidence            4466677778899999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             cHHHHHHHHHHHHhc
Q 008705          456 MLEEAIKCYRRAANC  470 (557)
Q Consensus       456 ~~~~A~~~~~~al~~  470 (557)
                      .|++|+.+++++..+
T Consensus        93 ~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   93 GYDEAIKVLQRAYSL  107 (284)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999999665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.10  E-value=7.7e-06  Score=52.13  Aligned_cols=39  Identities=33%  Similarity=0.680  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      |..+|.+|..+|++++|+..|+++++.+|+++.+|..+|
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            334444444444444444444444444444444444333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.08  E-value=0.0039  Score=61.04  Aligned_cols=140  Identities=21%  Similarity=0.169  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC----CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc---C------
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP----NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC---N------  471 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~---~------  471 (557)
                      ...|...+.+..+.|+++.|...+.++...++    ..+.+.+..+.++..  .|+..+|+..++..+..   .      
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~--~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA--QGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH--cCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            34455555555555555555555555444331    123444444555555  55555555555444440   0      


Q ss_pred             -------------------------CChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705          472 -------------------------DSEAIALNQLAKLHHAL------GRDEEAAFYYKKDLERMEAEEREGPNMVEALI  520 (557)
Q Consensus       472 -------------------------p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (557)
                                               .....++..+|......      +..+++...|.++++       ..|....+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~k~~~  296 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK-------LDPSWEKAWH  296 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-------hChhHHHHHH
Confidence                                     01134566677776666      788899999999998       7888999999


Q ss_pred             HHHHHHHHcCC-----------------HHHHHHHHHHHhccCCCchhhh
Q 008705          521 FLATHCRAHGR-----------------FEEAEVYCTRLLDYTGPVSFTH  553 (557)
Q Consensus       521 ~la~~~~~~g~-----------------~~~A~~~~~~al~~~~~~~~~a  553 (557)
                      .+|..+.+.=+                 ...|+..|-+++..++......
T Consensus       297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~~  346 (352)
T PF02259_consen  297 SWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQD  346 (352)
T ss_pred             HHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHHH
Confidence            99988765411                 1358999999999987644433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.08  E-value=0.00049  Score=65.51  Aligned_cols=142  Identities=15%  Similarity=0.047  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHH---hCChHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhHH-------hcCcHHHHHHHHHHHHhcCCChH
Q 008705          407 AWYGLGQAYEM---MHMPLYALHYFRK-SVFLQPNDSRLWIAMAQCYETE-------QLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       407 ~~~~l~~~~~~---~~~~~~A~~~~~~-a~~~~p~~~~~~~~l~~~~~~~-------~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      +.+..|.++.+   .|+.++|+..+.. .....+.+++++..+|.+|..-       .....++|+..|.++...+|+ .
T Consensus       181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~  259 (374)
T PF13281_consen  181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-Y  259 (374)
T ss_pred             HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-c
Confidence            33344444444   4444445544444 2223334444444444444320       022367788888888887753 3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHh-hhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          476 IALNQLAKLHHALGRDEEAAFYYKKDL----ERMEA-EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al----~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      ..-.+++.++...|...+....+++..    ..+.+ .......+...+-.++.+..-.|++++|...+++++++.|+.
T Consensus       260 Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  260 YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            344566666666665444443333333    11111 111233455666678888889999999999999999998764

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.06  E-value=0.01  Score=56.54  Aligned_cols=366  Identities=12%  Similarity=0.050  Sum_probs=216.9

Q ss_pred             HHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcC-----------CC
Q 008705          164 ELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLN-----------LN  232 (557)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~-----------~~  232 (557)
                      .|..-.+.+|.|...||.+...+-.+|.+++-.+.|++...-.|.-..+|.....-.-+..++.++.           .-
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l  109 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL  109 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence            4555566789999999999999999999999999999999999999999986654322222222210           11


Q ss_pred             hhHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------hcccHHHHHHHHH
Q 008705          233 NHWMKDYFLASAYQELRM----------HKESLTKYEYLQGTFSFSNYIQAQIAKAQY---------SLREFEQVEVIFE  293 (557)
Q Consensus       233 ~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~  293 (557)
                      +.|+.+    .-|.+.-+          .-+|.+..-...-..|.+...|...+..+.         .+.+.+.-...|.
T Consensus       110 dLW~lY----l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~  185 (660)
T COG5107         110 DLWMLY----LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM  185 (660)
T ss_pred             hHHHHH----HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence            233322    22222211          123333333333356777666766655543         3445667777888


Q ss_pred             HHHHhCCCCCCcH-HHHHHHHHhc---------c----chhHHHHHHHHHH-------hhCCCChhH-----------HH
Q 008705          294 ELLRNDPYRVDDM-DMYSNVLYAK---------E----CFSALSYLAHRVF-------MTDKYRPES-----------CC  341 (557)
Q Consensus       294 ~~l~~~p~~~~~~-~~~~~~~~~~---------~----~~~~~~~~~~~~~-------~~~~~~~~~-----------~~  341 (557)
                      +++...-.+.+-+ ..+-+.-...         +    -+-.+....+...       ..+|.+-..           |.
T Consensus       186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl  265 (660)
T COG5107         186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL  265 (660)
T ss_pred             HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence            8887654443221 1111110000         0    1111222222211       112111111           11


Q ss_pred             HHHHHH-----hhhCc-hHHHH-HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          342 IIGNYY-----SLKGQ-HEKSV-VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       342 ~la~~~-----~~~g~-~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      .....-     ...|+ +.+-+ -.+++++..-|-.++.|+-....+...++-+.|+...++++...|.   ....++.+
T Consensus       266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~  342 (660)
T COG5107         266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEY  342 (660)
T ss_pred             hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHH
Confidence            111111     11111 22222 3467777777888899999999899999999999999998887775   55667777


Q ss_pred             HHHhCChHHHHHHHHHHHhc------------------CCC-CHH-----------HHHHHHHHHhHHhcCcHHHHHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFL------------------QPN-DSR-----------LWIAMAQCYETEQLHMLEEAIKCY  464 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~------------------~p~-~~~-----------~~~~l~~~~~~~~~~~~~~A~~~~  464 (557)
                      |...++-+.-..+|+++++-                  +|. .++           +|+.+-..-.+  ..-.+.|...|
T Consensus       343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r--~~Gl~aaR~~F  420 (660)
T COG5107         343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLR--KRGLEAARKLF  420 (660)
T ss_pred             HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHH--HhhHHHHHHHH
Confidence            77777766666666655421                  111 011           22222222233  44567788888


Q ss_pred             HHHHhcCCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          465 RRAANCNDSEAIALNQLAKL-HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       465 ~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      -++-+..-....++..-|.+ +...|++.-|...|+-.+.       ..|+++......-..+...|+-..|...|++++
T Consensus       421 ~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~-------~f~d~~~y~~kyl~fLi~inde~naraLFetsv  493 (660)
T COG5107         421 IKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL-------KFPDSTLYKEKYLLFLIRINDEENARALFETSV  493 (660)
T ss_pred             HHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH-------hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence            88766542333444433433 5678999999999999998       577777777777778888999999999999776


Q ss_pred             cc
Q 008705          544 DY  545 (557)
Q Consensus       544 ~~  545 (557)
                      ..
T Consensus       494 ~r  495 (660)
T COG5107         494 ER  495 (660)
T ss_pred             HH
Confidence            54

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.04  E-value=0.015  Score=66.55  Aligned_cols=162  Identities=15%  Similarity=0.074  Sum_probs=109.0

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhh---C----CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDI---N----PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      |.+....-....+..+-+-.+++++-.   +    ..-.+.|...|++....|+++.|..+.-+|.+..  -+.+....|
T Consensus      1632 W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~A 1709 (2382)
T KOG0890|consen 1632 WKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERA 1709 (2382)
T ss_pred             HHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHH
Confidence            443333322333355666666665532   2    2337889999999999999999999999998876  567889999


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHhcC-CC----------h------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHh
Q 008705          447 QCYETEQLHMLEEAIKCYRRAANCN-DS----------E------AIALNQLAKLHHALGRD--EEAAFYYKKDLERMEA  507 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~  507 (557)
                      ..+..  .|+-..|+..+++.+..+ |+          .      ..+...++.-....|++  ++-+++|..+.+    
T Consensus      1710 K~lW~--~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~a---- 1783 (2382)
T KOG0890|consen 1710 KLLWQ--TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKA---- 1783 (2382)
T ss_pred             HHHHh--hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH----
Confidence            99999  999999999999999653 21          1      12344455555555653  244567777777    


Q ss_pred             hhcCCcchHHHHHHHHHHHH------------HcCCHHH---HHHHHHHHhccC
Q 008705          508 EEREGPNMVEALIFLATHCR------------AHGRFEE---AEVYCTRLLDYT  546 (557)
Q Consensus       508 ~~~~~~~~~~~~~~la~~~~------------~~g~~~~---A~~~~~~al~~~  546 (557)
                         ..|.....++.+|..|.            +.|++..   |+..|.+++..+
T Consensus      1784 ---il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1784 ---ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred             ---HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence               56666666666775543            3456555   666777777764

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.02  E-value=1.2e-05  Score=76.90  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=100.0

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP  421 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  421 (557)
                      ..++-....++++.|+..|.+|++++|+++..+-+.+..+++.+++..|+..+.++++.+|....+|+..|.+...++++
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            35666777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      .+|+..|+....+.|+++.+...+..|-..
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~  118 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECNKI  118 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence            999999999999999999888777766544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.0066  Score=63.48  Aligned_cols=316  Identities=13%  Similarity=0.049  Sum_probs=164.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHH----HHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705          182 YGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSID----ILNSLNLNNHWMKDYFLASAYQELRMHKESLTK  257 (557)
Q Consensus       182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~----~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~  257 (557)
                      .|.+....+-|++|...|++-    ..+..+..-|..-....+    .......|.-|..   +|.+..+.|...+|++.
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsq---lakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQ---LAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHH---HHHHHHhcCchHHHHHH
Confidence            456666677777777777653    334444443322222111    1122233333332   35555566666666665


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCCh
Q 008705          258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRP  337 (557)
Q Consensus       258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (557)
                      |-++     +++..+........+.|.|++-+.++.-+.+.... +..-..+.-.+...++..++..+.     ..|+.+
T Consensus      1127 yika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A 1195 (1666)
T KOG0985|consen 1127 YIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGPNVA 1195 (1666)
T ss_pred             HHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCCCch
Confidence            5554     34444555555555666666666655555443221 111111222222333333332221     112222


Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                       -.-.+|+-.+..|.|+.|.-+|..        ..-|..++..+..+|+|..|+..-++|     ++...|...+.++..
T Consensus      1196 -~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1196 -NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVD 1261 (1666)
T ss_pred             -hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhc
Confidence             122355555556666655555432        334556666666777777777666665     345566666665555


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY  497 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  497 (557)
                      .+.|.-|.-+=-..+    -.++-+-.+...|..  .|-+++-+..++.++-+...+...+..||.+|.+- ++++-.+.
T Consensus      1262 ~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~--rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNII----VHADELEELIEYYQD--RGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred             hhhhhHHHhcCceEE----EehHhHHHHHHHHHh--cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence            555443321110000    123445566777878  99999999999999988887788888888888765 56666666


Q ss_pred             HHHHHHHHHhhh-cCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705          498 YKKDLERMEAEE-REGPNMVEALIFLATHCRAHGRFEEAE  536 (557)
Q Consensus       498 ~~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~  536 (557)
                      ++-...+..-.. -...+....|..+..+|.+-..|+.|.
T Consensus      1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            555444211000 001233455666666666666666554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.017  Score=55.61  Aligned_cols=365  Identities=12%  Similarity=0.042  Sum_probs=215.5

Q ss_pred             hHHHHHHHHhhhhcCCCCC---hhHHHHHHHHH-HhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCC
Q 008705          157 ELISLERELSTSWKNGTVD---PFGLYLYGIVL-KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLN  232 (557)
Q Consensus       157 ~l~~~~~~l~~~~~~~~~~---~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~  232 (557)
                      ++..+.+.++....-.+.+   +.....+|.++ +-.+|++.|...++++..+...-+..+.                  
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd------------------   85 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD------------------   85 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh------------------
Confidence            4445555555554444433   45677777665 5588999999999998765433222210                  


Q ss_pred             hhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCCC--
Q 008705          233 NHWMKDYFLASAYQELR-MHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRN-DPYRVD--  304 (557)
Q Consensus       233 ~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~--  304 (557)
                      ..+...-.++.+|.... .+..+...+.+++++....+    ...++++..+.-..++..|.+.+.--... ++-...  
T Consensus        86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~yl  165 (629)
T KOG2300|consen   86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYL  165 (629)
T ss_pred             hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHH
Confidence            11222334688888887 78889999999999866654    35689999999999999999884322211 111110  


Q ss_pred             -cHHHHH--HHHHhccc---hhHHHHHHHHHHhhCCCCh---hH-----HHHHHHHHhhhCchHHHHHHHHHH---Hhc-
Q 008705          305 -DMDMYS--NVLYAKEC---FSALSYLAHRVFMTDKYRP---ES-----CCIIGNYYSLKGQHEKSVVYFRRA---LKL-  366 (557)
Q Consensus       305 -~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~-----~~~la~~~~~~g~~~~A~~~~~~a---l~~-  366 (557)
                       ....++  .++....+   ...+...+..+......++   +.     .+.--..|...|+...+...+++.   +.. 
T Consensus       166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti  245 (629)
T KOG2300|consen  166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI  245 (629)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence             111111  12222223   3334444444444333222   21     112233455667776666555543   221 


Q ss_pred             CcC------------CH--HHHHHH----hHHH-------HhcCCchHHHHHHHHHHhhCCC------Ch--------HH
Q 008705          367 DKN------------YL--SAWTLM----GHEY-------VEMKNTPAAIDAYRRAVDINPR------DY--------RA  407 (557)
Q Consensus       367 ~p~------------~~--~~~~~l----~~~~-------~~~~~~~~A~~~~~~al~~~p~------~~--------~~  407 (557)
                      .+.            .+  -.|.-.    +.+|       +-.|-+++|.++-++++....+      ..        ..
T Consensus       246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~  325 (629)
T KOG2300|consen  246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL  325 (629)
T ss_pred             CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence            111            00  111110    1111       1345677777777777654211      12        22


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC-h--
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFL---QPN-------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS-E--  474 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~-------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~-~--  474 (557)
                      +-.+..+-...|++.+|+.....+.+.   .|.       .+.+...+|.....  .+.++.|...|..+.+.... +  
T Consensus       326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s--v~~~enAe~hf~~a~k~t~~~dl~  403 (629)
T KOG2300|consen  326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS--VNCYENAEFHFIEATKLTESIDLQ  403 (629)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh--cchHHHHHHHHHHHHHhhhHHHHH
Confidence            344566667789999999888777654   343       24466778887777  89999999999999887433 2  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP-----NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ..+-.++|.+|...|+-+.-.    ++++.+...+ ..+     ....+++..|...+.++++.||....++.++..
T Consensus       404 a~~nlnlAi~YL~~~~~ed~y----~~ld~i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  404 AFCNLNLAISYLRIGDAEDLY----KALDLIGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHhHHHHHHHhccHHHHH----HHHHhcCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            335677999999988755433    3343221110 001     124567778888999999999999999999875

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00014  Score=63.03  Aligned_cols=112  Identities=17%  Similarity=0.053  Sum_probs=94.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhc--------cCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVN--------SYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE  247 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~  247 (557)
                      ..++...|.-+++.|+|.+|...|..|+.        .-|..++ |..|.....              ....+.+.|++.
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLdk~~t--------------pLllNy~QC~L~  242 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELDKMIT--------------PLLLNYCQCLLK  242 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHHHhhh--------------HHHHhHHHHHhh
Confidence            45788899999999999999999998873        4466554 666643322              223456889999


Q ss_pred             HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705          248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR  302 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  302 (557)
                      .|+|-++++....++...|.+..+++..|.++...=+..+|...|.++++++|.-
T Consensus       243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            9999999999999999999999999999999999999999999999999999964

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.92  E-value=1.5e-05  Score=76.12  Aligned_cols=109  Identities=16%  Similarity=0.138  Sum_probs=101.2

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  455 (557)
                      .-+..++..+.++.|+..|.++++++|+.+..+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.+...  .+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~--l~   86 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA--LG   86 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh--HH
Confidence            4466777889999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             cHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          456 MLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       456 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      ++.+|...|++...+.|+++.+...+..|-.
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            9999999999999999999998877766643

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.91  E-value=1.2e-05  Score=47.68  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=12.8

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705          395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYA  424 (557)
Q Consensus       395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  424 (557)
                      +++++++|+++.+|+++|.+|...|++++|
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            344444444444444444444444444443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.0062  Score=53.82  Aligned_cols=219  Identities=11%  Similarity=0.054  Sum_probs=142.4

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHhh-hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch-HHHHHHHHHHhh
Q 008705          323 SYLAHRVFMTDKYRPESCCIIGNYYSL-KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP-AAIDAYRRAVDI  400 (557)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~  400 (557)
                      ..+...++..+|-+-.+|...-.++.. ..+..+-+.++...++-+|++..+|...-.+....|++. .-++..+.++..
T Consensus        63 l~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~  142 (318)
T KOG0530|consen   63 LQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD  142 (318)
T ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc
Confidence            333444445555555555444444333 335677788888999999999999998888888888887 788889999999


Q ss_pred             CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH----hcCcHHHHHHHHHHHHhcCCChHH
Q 008705          401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE----QLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      +.++..+|...-.+....+.++.-+.+..+.++.+-.+-.+|+..-.+....    ..-..+.-+.+..+.+...|++..
T Consensus       143 DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS  222 (318)
T KOG0530|consen  143 DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES  222 (318)
T ss_pred             cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999998889999999999998887766656665432111110    012344556777888888999999


Q ss_pred             HHHHHHHHHHH-cC--CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH------HcCCHH---HHHHHHHHHh-
Q 008705          477 ALNQLAKLHHA-LG--RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR------AHGRFE---EAEVYCTRLL-  543 (557)
Q Consensus       477 ~~~~la~~~~~-~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~------~~g~~~---~A~~~~~~al-  543 (557)
                      +|..|.-++.. .|  .+..-.........      ......|..+-.+..+|.      +.+.-+   +|...|+..- 
T Consensus       223 aWnYL~G~l~~d~gl~s~s~vv~f~~~l~~------~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~  296 (318)
T KOG0530|consen  223 AWNYLKGLLELDSGLSSDSKVVSFVENLYL------QLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAI  296 (318)
T ss_pred             HHHHHHHHHHhccCCcCCchHHHHHHHHhh------ccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence            99888888876 44  12333333333321      023344555555555552      223333   5666666655 


Q ss_pred             ccCC
Q 008705          544 DYTG  547 (557)
Q Consensus       544 ~~~~  547 (557)
                      +.+|
T Consensus       297 ~~Dp  300 (318)
T KOG0530|consen  297 KVDP  300 (318)
T ss_pred             ccCc
Confidence            5554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.88  E-value=1.2e-05  Score=47.55  Aligned_cols=32  Identities=41%  Similarity=0.451  Sum_probs=16.6

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705          464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAA  495 (557)
Q Consensus       464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  495 (557)
                      |+++++++|+++.+++++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.87  E-value=0.054  Score=57.10  Aligned_cols=201  Identities=12%  Similarity=-0.001  Sum_probs=116.2

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCCH--------------------------HHHHHHhHHHHhcCCchHHHHHHH
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYL--------------------------SAWTLMGHEYVEMKNTPAAIDAYR  395 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------------~~~~~l~~~~~~~~~~~~A~~~~~  395 (557)
                      .-|......+..++|.+++.++++.-.+..                          ......+.+.+-.+++..|.....
T Consensus       306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~  385 (608)
T PF10345_consen  306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELE  385 (608)
T ss_pred             HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            335555666777788888888875421100                          123456667778899999999888


Q ss_pred             HHHhhC---CC------ChHHHHHHHHHHHHhCChHHHHHHHH--------HHHhcCCCCH---HHHHHHHHHHhHHhcC
Q 008705          396 RAVDIN---PR------DYRAWYGLGQAYEMMHMPLYALHYFR--------KSVFLQPNDS---RLWIAMAQCYETEQLH  455 (557)
Q Consensus       396 ~al~~~---p~------~~~~~~~l~~~~~~~~~~~~A~~~~~--------~a~~~~p~~~---~~~~~l~~~~~~~~~~  455 (557)
                      .+....   |.      .+..++..|..+...|+.+.|+.+|.        .+....+.+.   -+..++..++..  .+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~--~~  463 (608)
T PF10345_consen  386 FMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY--ES  463 (608)
T ss_pred             HHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh--hc
Confidence            777643   22      36778999999999999999999998        3333333322   133455666655  44


Q ss_pred             cHHH----HHHHHHHHHhcCCChHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 008705          456 MLEE----AIKCYRRAANCNDSEAI-----ALNQLAKLHH--ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT  524 (557)
Q Consensus       456 ~~~~----A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  524 (557)
                      ....    +...+++.-....+.+.     ++..+-.++.  ..-...++...+..+++...+.....--..-++..++.
T Consensus       464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~  543 (608)
T PF10345_consen  464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH  543 (608)
T ss_pred             ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            3222    44444433222111111     2222222221  12234588888888888541111122223344555666


Q ss_pred             HHHHcCCHHHHHHHHHHHhcc
Q 008705          525 HCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       525 ~~~~~g~~~~A~~~~~~al~~  545 (557)
                      .++ .|+..+......++...
T Consensus       544 ~lf-~~~~~e~~~~s~~a~~~  563 (608)
T PF10345_consen  544 RLF-EGDVGEQAKKSARAFQL  563 (608)
T ss_pred             HHH-cCCHHHHHHHHHHHHHH
Confidence            666 78888877777766654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.86  E-value=0.00092  Score=65.42  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=87.3

Q ss_pred             HHhCChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          416 EMMHMPLYALHYFRKSVFLQPNDSR-LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      ...|+...|+.++..++...|.... ...+++.+...  .|...+|-.++.+++.+....|..++.+|..+..+.+.+.|
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~--~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH--YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH--hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence            3467888899999999988886543 57889999998  89899999999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH
Q 008705          495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCR  527 (557)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  527 (557)
                      ++.|+.+++       .+|.++.+-..|-.+-.
T Consensus       696 ~~~~~~a~~-------~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  696 LEAFRQALK-------LTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHh-------cCCCChhhHHHHHHHHH
Confidence            999999999       67888777666554443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.85  E-value=0.044  Score=55.45  Aligned_cols=159  Identities=18%  Similarity=0.153  Sum_probs=104.9

Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCC--HHH------HHHHhHHHH----hcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNY--LSA------WTLMGHEYV----EMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~------~~~l~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      .+.--.|+-+.++..+.++.+. ++-  +-+      |+.....+.    ...+.+.|.+.+.......|+..-..+..|
T Consensus       196 ~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g  274 (468)
T PF10300_consen  196 SFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG  274 (468)
T ss_pred             hhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3333456777777777776652 221  111      111111111    234567788888888888888888888888


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-AIALNQLAKLHHA  487 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~  487 (557)
                      .++...|+.++|+..|++++.....-    .-+++.++.++..  +++|++|..+|.+..+.+.-. ....+..|-++..
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~--~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF--QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM  352 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH--HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            88888888888888888877433222    2356778888888  888888888888888765443 3455667778888


Q ss_pred             cCCH-------HHHHHHHHHHHHHHH
Q 008705          488 LGRD-------EEAAFYYKKDLERME  506 (557)
Q Consensus       488 ~g~~-------~~A~~~~~~al~~~~  506 (557)
                      .|+.       ++|.++|.++-....
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHHHh
Confidence            8888       777777777766443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.85  E-value=0.0067  Score=57.62  Aligned_cols=189  Identities=21%  Similarity=0.188  Sum_probs=133.9

Q ss_pred             hhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc----CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hC
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM----KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM----MH  419 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~  419 (557)
                      ...+++..|...+.++-..  ....+...++.+|...    .+..+|...|+.+.  ...++.+.+.+|.+|..    ..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~  127 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL  127 (292)
T ss_pred             cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence            3456777888888777652  2336677777777653    35777888888544  44567788888888876    45


Q ss_pred             ChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHH---hcC--cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cC
Q 008705          420 MPLYALHYFRKSVFLQPND-SRLWIAMAQCYETE---QLH--MLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LG  489 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~---~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g  489 (557)
                      +..+|..+|+++....-.. ..+...+|.+|..+   ..-  +...|...|.++....  ++.+.+.+|.+|..    ..
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~  205 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR  205 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence            8889999999988875443 34477788877761   001  3337888888887765  67788888888755    34


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhccCCCchhh
Q 008705          490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG---------------RFEEAEVYCTRLLDYTGPVSFT  552 (557)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~~~~~  552 (557)
                      ++.+|..+|.++.+       ...  ....+.++ ++...|               +...|..++.++....++....
T Consensus       206 d~~~A~~wy~~Aa~-------~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  273 (292)
T COG0790         206 DLKKAFRWYKKAAE-------QGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACE  273 (292)
T ss_pred             CHHHHHHHHHHHHH-------CCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence            88899999999988       333  77788888 666665               8888899998888776555443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.05  Score=57.30  Aligned_cols=225  Identities=11%  Similarity=0.081  Sum_probs=121.5

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      -+.|.+|-.+|.+..+.|...+|++.|-++     ++++.+.+.                         ..+..+.|.|+
T Consensus      1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eV-------------------------i~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEV-------------------------IDVASRTGKYE 1150 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHH-------------------------HHHHHhcCcHH
Confidence            466889999999999999999999999886     333444444                         44555666677


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705          253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT  332 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (557)
                      +-+.++..+.+... .+.+-..+..+|.+.++..+-.+..     ..|+. ......+.-.+..+.++.+.-++..    
T Consensus      1151 dLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AGPNV-ANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred             HHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cCCCc-hhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence            76666665544211 2222333334444455544433221     22322 2334445555555555555444433    


Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                          ..-|..++..+...|+|..|...-++|     ++...|-..+......+.+.-|--+--..+    -+.+-+-.+.
T Consensus      1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli 1286 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELI 1286 (1666)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHH
Confidence                234555666677777777777766665     234455555555555444443321110000    0122233445


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..|...|-|++-+..++.++.+..-.-.++..+|.+|.+
T Consensus      1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence            555555555555555555555544444455555555543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.82  E-value=0.021  Score=59.09  Aligned_cols=281  Identities=17%  Similarity=0.099  Sum_probs=183.9

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHh-----CCCCCCcHHHHHHHHHhcc---
Q 008705          251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL-----REFEQVEVIFEELLRN-----DPYRVDDMDMYSNVLYAKE---  317 (557)
Q Consensus       251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~---  317 (557)
                      ...|...++.+.+.  .+......+|.++..-     .|.+.|+.+|+.+...     .-..+.+...++.++....   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            45677777776443  4566677777777654     6788999999888761     1114456667777776643   


Q ss_pred             --chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC---chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc----CCch
Q 008705          318 --CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG---QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM----KNTP  388 (557)
Q Consensus       318 --~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~  388 (557)
                        +...+..++..+....  ++...+.+|.++..-.   +..+|..+|..|.+.  .+..+.+.++.+|..-    .+..
T Consensus       306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence              4455666665544443  5677778888877655   567888998888754  5677888888877643    4678


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhH--HhcCcHHHHH
Q 008705          389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMM-HMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYET--EQLHMLEEAI  461 (557)
Q Consensus       389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~--~~~~~~~~A~  461 (557)
                      .|..++.++.+.+  .+.+.+.++..+..- +.++.+...+.......-..+.    .+.........  ....+...+.
T Consensus       382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~  459 (552)
T KOG1550|consen  382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF  459 (552)
T ss_pred             HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence            8999999988877  455555555555433 7777776666655544322211    11111111111  0012455666


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc---CCHHH
Q 008705          462 KCYRRAANCNDSEAIALNQLAKLHHAL----GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH---GRFEE  534 (557)
Q Consensus       462 ~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~  534 (557)
                      ..+.++..  ..++.+...+|.+|..-    .+++.|...|.++..       ..   +...+++|.++..-   ..+..
T Consensus       460 ~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~-------~~---~~~~~nlg~~~e~g~g~~~~~~  527 (552)
T KOG1550|consen  460 SLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASE-------QG---AQALFNLGYMHEHGEGIKVLHL  527 (552)
T ss_pred             HHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH-------hh---hHHHhhhhhHHhcCcCcchhHH
Confidence            66666654  34567888888888765    368999999999887       22   88999999998742   22789


Q ss_pred             HHHHHHHHhccCCCchh
Q 008705          535 AEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       535 A~~~~~~al~~~~~~~~  551 (557)
                      |..+|.++.+.+.....
T Consensus       528 a~~~~~~~~~~~~~~~~  544 (552)
T KOG1550|consen  528 AKRYYDQASEEDSRAYL  544 (552)
T ss_pred             HHHHHHHHHhcCchhhh
Confidence            99999999887655443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.012  Score=52.18  Aligned_cols=197  Identities=12%  Similarity=0.087  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHhcc-chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchH-HHHHHHHHHHh
Q 008705          288 VEVIFEELLRNDPYRVDDMDMYSNVLYAKE-CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE-KSVVYFRRALK  365 (557)
Q Consensus       288 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~  365 (557)
                      |+.+...++..+|.+..+|...-.++...+ +..+-...+..++..+|.+-++|...-.+....|++. .-+++.+.++.
T Consensus        62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~  141 (318)
T KOG0530|consen   62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD  141 (318)
T ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence            444444445555555444444444443322 2333334444445555555566665555666666666 66677777777


Q ss_pred             cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-h-----CChHHHHHHHHHHHhcCCCCH
Q 008705          366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM-M-----HMPLYALHYFRKSVFLQPNDS  439 (557)
Q Consensus       366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~-----~~~~~A~~~~~~a~~~~p~~~  439 (557)
                      .+.++..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...--+... .     -..+.-+.+..+.+.+.|++.
T Consensus       142 ~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~Ne  221 (318)
T KOG0530|consen  142 DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNE  221 (318)
T ss_pred             ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCc
Confidence            7777777777777777777777777777777777666665555432211111 1     122344566667777778887


Q ss_pred             HHHHHHHHHHhHHhcC--cHHHHHHHHHHHH-hcCCChHHHHHHHHHHH
Q 008705          440 RLWIAMAQCYETEQLH--MLEEAIKCYRRAA-NCNDSEAIALNQLAKLH  485 (557)
Q Consensus       440 ~~~~~l~~~~~~~~~~--~~~~A~~~~~~al-~~~p~~~~~~~~la~~~  485 (557)
                      .+|..+.-++.. ..|  .+.+-.......+ ......|..+-.+..+|
T Consensus       222 SaWnYL~G~l~~-d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  222 SAWNYLKGLLEL-DSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY  269 (318)
T ss_pred             cHHHHHHHHHHh-ccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence            788777766653 022  2334444444443 33334455555555555

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.81  E-value=0.0097  Score=58.28  Aligned_cols=67  Identities=10%  Similarity=0.102  Sum_probs=51.1

Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC----CHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      .......|...+.+....|.++.|...+.++...++.    .+.+.+..+.+....|+..+|+..++..+.
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3345667788888888888888888888888775421    456677778888888888888888887776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00066  Score=59.08  Aligned_cols=70  Identities=11%  Similarity=-0.002  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      ...+.+.++++...|+|-++++.....+...|.+..+++..|.+...  .=+..+|...|.++++++|.-..
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa--~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA--VWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh--hcCHHHHHHHHHHHHhcChhhHH
Confidence            44567778888888888888888888888888888888888888877  77788888888888888876543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.75  E-value=5.8e-05  Score=44.95  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN  209 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  209 (557)
                      |.+++.+|.++...|++++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=4.6e-05  Score=45.41  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN  209 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  209 (557)
                      +.+|+.+|.++...|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.72  E-value=0.0016  Score=54.48  Aligned_cols=123  Identities=18%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP-LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM  456 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  456 (557)
                      |......++.+.++..+++++.+...+.-.-..-       ..+ ......++..      ...+...++..+..  .|+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~--~~~   77 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLE--AGD   77 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHH--TT-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh--ccC
Confidence            4445566677777777777777654331110000       111 1111222222      13456778888888  999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705          457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM  515 (557)
Q Consensus       457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (557)
                      +++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++...+....+..|..
T Consensus        78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~  136 (146)
T PF03704_consen   78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP  136 (146)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence            99999999999999999999999999999999999999999999998877666666643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.70  E-value=0.045  Score=51.30  Aligned_cols=235  Identities=14%  Similarity=0.059  Sum_probs=141.3

Q ss_pred             HhcccHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC-chHHHH
Q 008705          280 YSLREFEQVEVIFEELLRND-PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG-QHEKSV  357 (557)
Q Consensus       280 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~  357 (557)
                      ...|+++.|..++.++-... ...++....+                           ...++..|......+ +++.|.
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~L---------------------------a~~~yn~G~~l~~~~~~~~~a~   56 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEEL---------------------------ARVCYNIGKSLLSKKDKYEEAV   56 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHH---------------------------HHHHHHHHHHHHHcCCChHHHH
Confidence            46788999999998887655 2222222222                           356677888888899 999999


Q ss_pred             HHHHHHHhc----Cc---CC-------HHHHHHHhHHHHhcCCch---HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705          358 VYFRRALKL----DK---NY-------LSAWTLMGHEYVEMKNTP---AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM  420 (557)
Q Consensus       358 ~~~~~al~~----~p---~~-------~~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  420 (557)
                      ..++++.++    .+   ..       ..++..++.++...+.++   +|....+.+-...|+.+..+...-.+..+.++
T Consensus        57 ~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~  136 (278)
T PF08631_consen   57 KWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD  136 (278)
T ss_pred             HHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC
Confidence            999999887    21   11       244677888998888754   45556666666778777777555566666899


Q ss_pred             hHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc--CCChHHHHHH---HHHHHHHcC--CHH
Q 008705          421 PLYALHYFRKSVFLQP-NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDSEAIALNQ---LAKLHHALG--RDE  492 (557)
Q Consensus       421 ~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~---la~~~~~~g--~~~  492 (557)
                      .+++.+.+.+++..-+ .....-..+..+... .......|..++...+..  .|.... +..   +..++...+  +..
T Consensus       137 ~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l-~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~  214 (278)
T PF08631_consen  137 EEEYEEILMRMIRSVDHSESNFDSILHHIKQL-AEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLS  214 (278)
T ss_pred             hhHHHHHHHHHHHhcccccchHHHHHHHHHHH-HhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCcccc
Confidence            9999999999988654 222222222222111 034456777777777653  232221 222   122222222  222


Q ss_pred             HH--HHHHHHHHHHHHhhh--cCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          493 EA--AFYYKKDLERMEAEE--REGPNM----VEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       493 ~A--~~~~~~al~~~~~~~--~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      ..  ++.....++......  +..+..    ...+.+.|.-.++.++|++|..+|+-++
T Consensus       215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            22  333333333222111  122222    2344557888999999999999999776

It is also involved in sporulation [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=6.2e-05  Score=44.83  Aligned_cols=29  Identities=34%  Similarity=0.622  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      |+.+|.+|..+|++++|+..|+++++++|
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            33344444444444444444444444333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.68  E-value=0.0068  Score=58.01  Aligned_cols=123  Identities=15%  Similarity=0.143  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH---cCCHHHHHHHH
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA---LGRDEEAAFYY  498 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~  498 (557)
                      +.-+.+|++|++.+|++...+..+-.+..+  ....++..+-+++++..+|+++..|...-.....   .-.+......|
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~--~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y  125 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEK--VWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY  125 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            445667777777777777777766666666  6677777777777777777776665544333322   23466777777


Q ss_pred             HHHHHHHHhhhcC-----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          499 KKDLERMEAEERE-----------GPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       499 ~~al~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      .+++..+......           ......++..+.....+.|-.+.|...++-.++++
T Consensus       126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            7777755432221           12235667778888999999999999999999875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.61  E-value=0.00013  Score=43.34  Aligned_cols=29  Identities=45%  Similarity=0.734  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      |+.+|.++..+|++++|+.+|+++++++|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            33344444444444444444444443333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0085  Score=54.30  Aligned_cols=161  Identities=18%  Similarity=0.065  Sum_probs=90.4

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH-HHHHHHHh
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW-IAMAQCYE  450 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~-~~l~~~~~  450 (557)
                      +.-...+......|++.+|...|..++...|.+..+...++.+|...|+.+.|...+...-.....+...- ......+.
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            33444555666777777777777777777777777777777777777777777766654322221111111 01111222


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG  530 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  530 (557)
                      +  .....+ ...+++.+..+|++..+.+.+|..+...|+.++|.+.+-..++.-     ..-.+..+...+-.++...|
T Consensus       215 q--aa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-----~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         215 Q--AAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD-----RGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             H--HhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----ccccCcHHHHHHHHHHHhcC
Confidence            2  222221 123444555677777777777777777777777777776666521     22344555566666666666


Q ss_pred             CHHHHHHHHH
Q 008705          531 RFEEAEVYCT  540 (557)
Q Consensus       531 ~~~~A~~~~~  540 (557)
                      .-+.+...++
T Consensus       287 ~~Dp~~~~~R  296 (304)
T COG3118         287 PADPLVLAYR  296 (304)
T ss_pred             CCCHHHHHHH
Confidence            4433333333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.0064  Score=51.45  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCCCHH---HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHH
Q 008705          424 ALHYFRKSVFLQPNDSR---LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFY  497 (557)
Q Consensus       424 A~~~~~~a~~~~p~~~~---~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~  497 (557)
                      .....++...-++....   .-..++..+..  .|++++|+..++.++....+.   ..+-.+||.+...+|.+++|+..
T Consensus        71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve--~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~  148 (207)
T COG2976          71 SIAAAEKFVQANGKTIYAVLAALELAKAEVE--ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT  148 (207)
T ss_pred             hHHHHHHHHhhccccHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            33344444444444322   33456667777  788888888888777543322   33566778888888888888777


Q ss_pred             HHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          498 YKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       498 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      +.....        ..-.+..-...|+++...|+.++|+..|+++++.++++
T Consensus       149 L~t~~~--------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         149 LDTIKE--------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             Hhcccc--------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            765443        12233345557888888888888888888888775433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.0037  Score=56.57  Aligned_cols=55  Identities=13%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEEL  295 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  295 (557)
                      .+.-....|++.+|...|..++...|++..+...++.++...|+.+.|..++..+
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            4667788999999999999999999999999999999999999999998877654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.56  E-value=0.089  Score=50.86  Aligned_cols=126  Identities=13%  Similarity=0.128  Sum_probs=97.9

Q ss_pred             chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705          155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH  234 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~  234 (557)
                      .+++..+.+.+...+...|.+|..-.+.+.+....|.|+.|...+..+-..-.....+...                   
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~-------------------  362 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRC-------------------  362 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHH-------------------
Confidence            4567777888888888899999999999999999999999988876554432222222222                   


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCc
Q 008705          235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDD  305 (557)
Q Consensus       235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  305 (557)
                            +-.....+|++++|.....-++...-+++++....|......|-++++...+++++.++|.....
T Consensus       363 ------~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g  427 (831)
T PRK15180        363 ------RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG  427 (831)
T ss_pred             ------HHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence                  24556778999999999999988777788887777777788899999999999999998865443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.55  E-value=0.078  Score=55.41  Aligned_cols=272  Identities=14%  Similarity=0.017  Sum_probs=165.4

Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH---HHHhccchhHHHHHHHHHH-hhCCCChhHHHHH
Q 008705          268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN---VLYAKECFSALSYLAHRVF-MTDKYRPESCCII  343 (557)
Q Consensus       268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  343 (557)
                      -...+...+..+...|...+|+..--.+  .+|..  +...+-+   -+...++..-+..+.+.+- ..--..|......
T Consensus       346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~--aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~  421 (894)
T COG2909         346 LKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEM--AADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ  421 (894)
T ss_pred             hhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHH--HHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence            3566777777788888888887664433  12211  0111111   1222222222222222110 1112367777888


Q ss_pred             HHHHhhhCchHHHHHHHHHHHhcCcC---------CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-----hHHHH
Q 008705          344 GNYYSLKGQHEKSVVYFRRALKLDKN---------YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-----YRAWY  409 (557)
Q Consensus       344 a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~  409 (557)
                      +.......++.+|..+..++...-+.         .....-..|.+....|++++|++..+.++..-|.+     ..+..
T Consensus       422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s  501 (894)
T COG2909         422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS  501 (894)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence            88888999999999888887654333         12334567788889999999999999999987765     45577


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCC----CHH--HHHHHHHHHhHHhcCc--HHHHHHHHHHHHh----cCCChHHH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPN----DSR--LWIAMAQCYETEQLHM--LEEAIKCYRRAAN----CNDSEAIA  477 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~--~~~~l~~~~~~~~~~~--~~~A~~~~~~al~----~~p~~~~~  477 (557)
                      .+|.+....|++++|..+.+++.+....    .-.  +....+.++..  +|+  +.+....|...-.    ..|.....
T Consensus       502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~--qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~  579 (894)
T COG2909         502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA--QGQVARAEQEKAFNLIREQHLEQKPRHEFL  579 (894)
T ss_pred             hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence            8899999999999999999998876322    222  33445667777  883  3333444433322    23443333


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE-ALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ....+.++...-+++.+..-..+.++...... ..|.... +++.|+.++...|++++|......+..+-
T Consensus       580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            33333333333336666666666655322211 1233333 33489999999999999999998887653

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.53  E-value=0.27  Score=57.02  Aligned_cols=124  Identities=16%  Similarity=0.154  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHh---cC----CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705          421 PLYALHYFRKSVF---LQ----PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       421 ~~~A~~~~~~a~~---~~----p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  493 (557)
                      ..+-+-.+++++-   .+    ..-.++|...|.+...  .|+++.|...+-+|.+..  -+.+....|..++..|+...
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~--aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL--AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh--cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHH
Confidence            4555555555542   23    2346799999999999  999999999999998776  57889999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCC----cc------hHHHHHHHHHHHHHcCCHH--HHHHHHHHHhccCCC
Q 008705          494 AAFYYKKDLERMEAEEREG----PN------MVEALIFLATHCRAHGRFE--EAEVYCTRLLDYTGP  548 (557)
Q Consensus       494 A~~~~~~al~~~~~~~~~~----~~------~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~  548 (557)
                      |+..+++.++.........    |.      ...+.+.++......|+++  +-+.+|+.+.++.|.
T Consensus      1721 Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred             HHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence            9999999997543221111    11      1335566677777777753  567888999888764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.53  E-value=0.16  Score=53.14  Aligned_cols=248  Identities=15%  Similarity=0.020  Sum_probs=152.1

Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705          268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY  347 (557)
Q Consensus       268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  347 (557)
                      +|......|.......++.+|..+..++...-+.......                         .....+.....|.+.
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~-------------------------~~l~ae~~aL~a~va  468 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ-------------------------GDLLAEFQALRAQVA  468 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch-------------------------hhHHHHHHHHHHHHH
Confidence            5667778888888999999999998888765443111000                         000123334467777


Q ss_pred             hhhCchHHHHHHHHHHHhcCcCC-----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC----CChHHH--HHHHHHHH
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNY-----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP----RDYRAW--YGLGQAYE  416 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~--~~l~~~~~  416 (557)
                      ...|++++|+.+.+.++..-|..     ..+...+|.+..-.|++++|..+.+.+.+...    .....|  ...+.++.
T Consensus       469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~  548 (894)
T COG2909         469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE  548 (894)
T ss_pred             HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            78899999999999998877654     34566788888899999999999888887632    223333  34466777


Q ss_pred             HhCC--hHHHHHHHHHHHh----cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCCh--HH-HHHHHHH
Q 008705          417 MMHM--PLYALHYFRKSVF----LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDSE--AI-ALNQLAK  483 (557)
Q Consensus       417 ~~~~--~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~~--~~-~~~~la~  483 (557)
                      .+|+  +.+....|...-.    ..|-........+.++..  .-+++.+..-..+.++.    .|..  .. ++..|+.
T Consensus       549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~--~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~  626 (894)
T COG2909         549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRA--WLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE  626 (894)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH--HHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence            7883  3333333333222    223332333333333333  23355555555555544    2222  22 3458999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNM-VEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      ++...|+.++|...+......+.... ..+.. ..++.-...+...+||..+|..+..+..
T Consensus       627 l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         627 LEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            99999999999999999887544322 11111 2222223344557899999988887743

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.48  E-value=0.2  Score=52.93  Aligned_cols=106  Identities=10%  Similarity=0.122  Sum_probs=72.8

Q ss_pred             ChhHHHHHHHHHH-hcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          175 DPFGLYLYGIVLK-DKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       175 ~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      ++.+.+.+|.++. ...++++|...+.+++.+...+.  +..+                 .+...+.++.++.+.+... 
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~--~~d~-----------------k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHR--LTDL-----------------KFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hHHH-----------------HHHHHHHHHHHHHhcCHHH-
Confidence            4568899999987 78999999999999987764411  1111                 1223455688888888777 


Q ss_pred             HHHHHHHHHhcCCC---CHHHH-HHH--HHHHHhcccHHHHHHHHHHHHHhCC
Q 008705          254 SLTKYEYLQGTFSF---SNYIQ-AQI--AKAQYSLREFEQVEVIFEELLRNDP  300 (557)
Q Consensus       254 A~~~~~~~l~~~p~---~~~~~-~~l--a~~~~~~g~~~~A~~~~~~~l~~~p  300 (557)
                      |...+++.++....   ....+ +.+  ...+...+++..|++.++.+.....
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~  170 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN  170 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence            99999998875433   22222 222  2333334799999999999988653

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.47  E-value=0.00016  Score=66.17  Aligned_cols=92  Identities=18%  Similarity=0.201  Sum_probs=80.0

Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA  424 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  424 (557)
                      .-....|.++.|+..|..+++++|.....+...+.+++++++...|++.+..+++++|+....+-..|.+...+|++++|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            33455788999999999999999998888999999999999999999999999999998888888888888999999999


Q ss_pred             HHHHHHHHhcCC
Q 008705          425 LHYFRKSVFLQP  436 (557)
Q Consensus       425 ~~~~~~a~~~~p  436 (557)
                      ...+..+.+++-
T Consensus       202 a~dl~~a~kld~  213 (377)
T KOG1308|consen  202 AHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHhccc
Confidence            999999888763

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.46  E-value=0.0038  Score=52.22  Aligned_cols=115  Identities=16%  Similarity=0.099  Sum_probs=70.1

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH-HHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA-AIDAYRRAVDINPRDYRAWYGLGQAYEMM  418 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~  418 (557)
                      .+..|......++.+.++..+++++.+.....-.-..       ...+-. ....++..      ...+...++..+...
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~   75 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEA   75 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            3444666677889999999999999886443110000       011111 11222221      234555677777778


Q ss_pred             CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705          419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       419 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~  469 (557)
                      |++++|+..+++++..+|.+..++..+..++..  .|+..+|++.|++...
T Consensus        76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~--~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAA--QGRRAEALRVYERYRR  124 (146)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence            888888888888888888888888888888887  8888888887777643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.029  Score=55.09  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=75.7

Q ss_pred             chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705          155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH  234 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~  234 (557)
                      +.+.....+.+....+..|+++...+..+..+...|+.+.|+..+..++.      .-|..+-                 
T Consensus       246 ~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~------~~~kQ~~-----------------  302 (546)
T KOG3783|consen  246 NPDGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP------IRMKQVK-----------------  302 (546)
T ss_pred             CccHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc------HHHHHHH-----------------
Confidence            34447777778888888899999999999999999998889999998887      2233331                 


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIA  276 (557)
Q Consensus       235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la  276 (557)
                      .+..|-+|.++.-..+|..|-..+..+.+...-+.-.+..++
T Consensus       303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  303 SLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFA  344 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence            123355788889999999999999999887766665665555

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.42  E-value=0.12  Score=49.14  Aligned_cols=159  Identities=23%  Similarity=0.300  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCCCC-hHHH
Q 008705          338 ESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINPRD-YRAW  408 (557)
Q Consensus       338 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~  408 (557)
                      .....++..|..    ..+..+|..+|+.+.  ....+.+.+.+|..|..    ..+..+|...|+++.+..-.. ..+.
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~  151 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM  151 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence            444555555543    345778888888544  45667788888888876    448889999999988875433 3447


Q ss_pred             HHHHHHHHHhC-------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHhcCCChHHHHH
Q 008705          409 YGLGQAYEMMH-------MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCNDSEAIALN  479 (557)
Q Consensus       409 ~~l~~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~  479 (557)
                      +.+|.+|..-.       +...|+..|.++....  ++.+...+|.+|..+  ...++.+|..+|.++.+...  ....+
T Consensus       152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~  227 (292)
T COG0790         152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY  227 (292)
T ss_pred             HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence            77888776642       2336888888888765  778888999888762  12378999999999998876  77888


Q ss_pred             HHHHHHHHcC---------------CHHHHHHHHHHHHH
Q 008705          480 QLAKLHHALG---------------RDEEAAFYYKKDLE  503 (557)
Q Consensus       480 ~la~~~~~~g---------------~~~~A~~~~~~al~  503 (557)
                      .++ ++...|               +...|..++.++..
T Consensus       228 ~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  265 (292)
T COG0790         228 NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE  265 (292)
T ss_pred             HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence            888 666666               66666666666655

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0076  Score=55.20  Aligned_cols=105  Identities=14%  Similarity=-0.087  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      +.-+-.-|.-|++.++|..|+.+|.+.|...-.+.+.-.                     ..+.+.|.+....|+|..|+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna---------------------vLY~NRAAa~~~l~NyRs~l  139 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA---------------------VLYTNRAAAQLYLGNYRSAL  139 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH---------------------HHHhhHHHHHHHHHHHHHHH
Confidence            455666799999999999999999999987665554322                     22455799999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705          256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY  301 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  301 (557)
                      .-+.+++..+|.+..+++.-|.|++.+..+.+|..+++..+.++..
T Consensus       140 ~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  140 NDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999999999999999999999999999999999999999877654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00088  Score=61.07  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      ++.+-.-|+-|+...+|..|+..|.+.++..-.+    ...|.+.+.+....|+|..|+....+++.++|.+..+++.-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            4456668999999999999999999999875333    455888999999999999999999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcC
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQ  435 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~  435 (557)
                      .++..+.++.+|..+++..+.++
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999888876654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.35  E-value=0.00022  Score=65.25  Aligned_cols=94  Identities=15%  Similarity=0.140  Sum_probs=86.4

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcH
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML  457 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  457 (557)
                      +...+..|.+++|++.|..++.++|.....+...+.++.+++++..|+.-|..++.++|+...-+-..|.+...  +|++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl--lg~~  198 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL--LGNW  198 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH--hhch
Confidence            44456778899999999999999999999999999999999999999999999999999999988888999988  9999


Q ss_pred             HHHHHHHHHHHhcCCC
Q 008705          458 EEAIKCYRRAANCNDS  473 (557)
Q Consensus       458 ~~A~~~~~~al~~~p~  473 (557)
                      ++|...+..+.+++-+
T Consensus       199 e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  199 EEAAHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999999988643

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.27  E-value=0.031  Score=57.88  Aligned_cols=117  Identities=24%  Similarity=0.283  Sum_probs=48.8

Q ss_pred             CchHHHHHHHHHHHhc-----CcCCHHHHHHHhHHHHhcC-----CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-
Q 008705          351 GQHEKSVVYFRRALKL-----DKNYLSAWTLMGHEYVEMK-----NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH-  419 (557)
Q Consensus       351 g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-  419 (557)
                      .+.+.|+.+|+.+...     ....+.+.+.+|.+|....     +...|+.+|.++-...  ++.+.+.+|.++..-. 
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~  340 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK  340 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence            3455555555554430     0112333444444444422     3344444444444433  2334444444444333 


Q ss_pred             --ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHhcC
Q 008705          420 --MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       420 --~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~~~  471 (557)
                        +...|..+|..|...  .+..+.+.++.||..+  -..+...|..+++++.+.+
T Consensus       341 ~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  341 ERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             cccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence              234444444444432  2344444444444431  1123444445555444443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.20  E-value=0.02  Score=55.50  Aligned_cols=168  Identities=15%  Similarity=0.053  Sum_probs=101.7

Q ss_pred             HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705          330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY  409 (557)
Q Consensus       330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  409 (557)
                      +...|...+++..++.++...|+++.|.+++++|+-.........+..-..-...|+   +.--|+.  ..|..-..+.+
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~~~~--~eNR~fflal~  107 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLDYRR--PENRQFFLALF  107 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccCCcc--ccchHHHHHHH
Confidence            466888889999999999999999999999888874321111111100000000010   0000000  00111244556


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHH-HHHhHHhcCcHHHHHHHHHHHHhcCC-----ChHHHHHHHH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMA-QCYETEQLHMLEEAIKCYRRAANCND-----SEAIALNQLA  482 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~-~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la  482 (557)
                      .......+.|-+..|+++++-.+.++|. ||-...... ....+  .++++--+..++.......     .-|...+..+
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr--s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a  185 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR--SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA  185 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh--cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence            6677778888888888888888888888 665443333 33345  6777777777766544211     1235667777


Q ss_pred             HHHHHcCCH---------------HHHHHHHHHHHHH
Q 008705          483 KLHHALGRD---------------EEAAFYYKKDLER  504 (557)
Q Consensus       483 ~~~~~~g~~---------------~~A~~~~~~al~~  504 (557)
                      .++...++.               ++|...+.+|+..
T Consensus       186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             HHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence            777777777               7888888888764

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.17  E-value=0.033  Score=42.85  Aligned_cols=105  Identities=19%  Similarity=0.126  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705          441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE  508 (557)
Q Consensus       441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (557)
                      +|..|+..-.+..-|-|++|...+.++......            +..++..|+..+..+|+|++++..-++++..+...
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            344444443332268889999888888875321            24477789999999999999999999999988888


Q ss_pred             hcCCcchHHHH----HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          509 EREGPNMVEAL----IFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       509 ~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      +....+....|    +..|..+...|+.++|+..|+.+-+.
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            87777765555    45788899999999999999998664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.14  E-value=0.00066  Score=40.27  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWN  209 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  209 (557)
                      .+++.+|.++...|++++|+..|+++++.+|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999998853

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.032  Score=47.33  Aligned_cols=55  Identities=11%  Similarity=0.029  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcccHHHHHHHHHH
Q 008705          240 FLASAYQELRMHKESLTKYEYLQGTFSFS---NYIQAQIAKAQYSLREFEQVEVIFEE  294 (557)
Q Consensus       240 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~  294 (557)
                      .++..+.+.|++++|+..++.++....+.   .-+-..+|++....|.+++|+..+..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            34555555555555555555554332221   12234455555555555555554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.08  E-value=0.0009  Score=39.68  Aligned_cols=29  Identities=41%  Similarity=0.693  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      |+.+|.+|..+|++++|+.+|+++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            33444444444444444444444444333

...

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.08  E-value=0.041  Score=52.73  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH-HhcCcHHHHHHHHHHH
Q 008705          389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET-EQLHMLEEAIKCYRRA  467 (557)
Q Consensus       389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~~~~~~~~A~~~~~~a  467 (557)
                      .-+..|++|++.+|++...+..+-.+..+..+.++...-+++++..+|+++.+|..+-..... ...-.+++....|.++
T Consensus        49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~  128 (321)
T PF08424_consen   49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC  128 (321)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            344555566666665555555555555555555555555666666666555555444333221 0012344444444444


Q ss_pred             HhcC------C------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          468 ANCN------D------------SEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       468 l~~~------p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +..-      .            .-..++..+.....+.|..+.|+..++..++
T Consensus       129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE  182 (321)
T PF08424_consen  129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE  182 (321)
T ss_pred             HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence            4320      0            0022445555566666777777777766666

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.05  E-value=0.46  Score=48.37  Aligned_cols=162  Identities=14%  Similarity=0.067  Sum_probs=106.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008705          182 YGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYL  261 (557)
Q Consensus       182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  261 (557)
                      .+.+-.--|.+++|.+.|-.+-+.+-                                 -...+...|++-...++++..
T Consensus       740 ~aei~~~~g~feeaek~yld~drrDL---------------------------------Aielr~klgDwfrV~qL~r~g  786 (1189)
T KOG2041|consen  740 RAEISAFYGEFEEAEKLYLDADRRDL---------------------------------AIELRKKLGDWFRVYQLIRNG  786 (1189)
T ss_pred             hHhHhhhhcchhHhhhhhhccchhhh---------------------------------hHHHHHhhhhHHHHHHHHHcc
Confidence            34444556889999998876644321                                 134566777777777666654


Q ss_pred             HhcCC--CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhH
Q 008705          262 QGTFS--FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPES  339 (557)
Q Consensus       262 l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (557)
                      -.-..  .-..++..+|..+..+..|++|.++|.+.-.        ...+..+++..+.++++..++..    -|.+.+.
T Consensus       787 ~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~~----Lpe~s~l  854 (1189)
T KOG2041|consen  787 GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLART----LPEDSEL  854 (1189)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHHh----cCcccch
Confidence            22211  1345788889999999999999999887532        34567788888888888777665    4556666


Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                      +-.+|..+...|.-++|++.|-+.-  .|.-      -.+....++++.+|++.-++
T Consensus       855 lp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  855 LPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHHh
Confidence            6778888888888888888776531  1221      11334455566666655443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.03  E-value=0.29  Score=45.85  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=81.3

Q ss_pred             HHhcCChHHHHHHHHHHhccC-CCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHh
Q 008705          186 LKDKGNENLARTVFVESVNSY-PWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR-MHKESLTKYEYLQG  263 (557)
Q Consensus       186 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~  263 (557)
                      ..++|+++.|..++.++-... ..++.....|+..                  .|..|......+ ++++|...++++.+
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~------------------~yn~G~~l~~~~~~~~~a~~wL~~a~~   64 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARV------------------CYNIGKSLLSKKDKYEEAVKWLQRAYD   64 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHH------------------HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            457899999999999987655 4444444455433                  345688888888 99999999999877


Q ss_pred             cC----C---CC-------HHHHHHHHHHHHhcccHH---HHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          264 TF----S---FS-------NYIQAQIAKAQYSLREFE---QVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       264 ~~----p---~~-------~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      .-    +   ..       ..++..++.++...+.++   +|....+.+-...|+.+........++....+.+.+...+
T Consensus        65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L  144 (278)
T PF08631_consen   65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEIL  144 (278)
T ss_pred             HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHH
Confidence            62    1   11       234667788888776654   4555555555556665555444444444444445554444


Q ss_pred             HHHHhh
Q 008705          327 HRVFMT  332 (557)
Q Consensus       327 ~~~~~~  332 (557)
                      .+++..
T Consensus       145 ~~mi~~  150 (278)
T PF08631_consen  145 MRMIRS  150 (278)
T ss_pred             HHHHHh
Confidence            444443

It is also involved in sporulation [].

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.056  Score=53.19  Aligned_cols=73  Identities=19%  Similarity=0.135  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCc
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR-FEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~  549 (557)
                      -+..+|.++..+|+...|..+|..+++.........--.|.+++.+|..+..+|. ..++..++.+|-+...+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            5677899999999999999999999975444333444568899999999999999 999999999998876443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.88  E-value=0.0015  Score=38.31  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWN  209 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  209 (557)
                      ++++.+|.++.+.|++++|+..|+++++.+|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            368999999999999999999999999999974

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.76  E-value=0.97  Score=47.66  Aligned_cols=124  Identities=15%  Similarity=0.012  Sum_probs=70.0

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFLQPNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      ++.......+.+.|...+.+......-+.    .++..+|.-...  .+...+|...+..+.... .+.........+..
T Consensus       247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~--~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al  323 (644)
T PRK11619        247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMG--NDVTDEQAKWRDDVIMRS-QSTSLLERRVRMAL  323 (644)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHhccccc-CCcHHHHHHHHHHH
Confidence            33334455666777777776544333222    233444443333  322566677666654332 22233333344445


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      ..++++.+...+...-.       .........+++|+.+...|+.++|..+|+++..
T Consensus       324 ~~~dw~~~~~~i~~L~~-------~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        324 GTGDRRGLNTWLARLPM-------EAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HccCHHHHHHHHHhcCH-------hhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            77777776666665433       2234667788888887778888888888887744

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.67  E-value=0.93  Score=46.30  Aligned_cols=196  Identities=15%  Similarity=0.054  Sum_probs=116.4

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC--CCChhHHHHHHHHHhhhC
Q 008705          274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD--KYRPESCCIIGNYYSLKG  351 (557)
Q Consensus       274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g  351 (557)
                      +.|.+-.--|+|++|.+.|-.+-+.        +....+....+++-....+++.....+  ...-.++..+|..+....
T Consensus       739 q~aei~~~~g~feeaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~  810 (1189)
T KOG2041|consen  739 QRAEISAFYGEFEEAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMM  810 (1189)
T ss_pred             HhHhHhhhhcchhHhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            3455555568888888887554221        222333444555555555544422221  123457888999999999


Q ss_pred             chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705          352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS  431 (557)
Q Consensus       352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  431 (557)
                      .+++|.++|.+.-..        -+...+++...+|++-..    ....-|++...+-.+|..+...|+-++|.+.|-+.
T Consensus       811 ~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  811 EWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             HHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence            999999999875322        244566666666665433    33445778888888999999999999999888653


Q ss_pred             HhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD  501 (557)
Q Consensus       432 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (557)
                      -  .|.   +  .+ .....  ++++.+|++..++-.  -|.-.......+.-+...++.-+|++..+++
T Consensus       879 s--~pk---a--Av-~tCv~--LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  879 S--LPK---A--AV-HTCVE--LNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             c--CcH---H--HH-HHHHH--HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            2  121   1  11 22334  677888877766531  1332333333344444555666666655554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.66  E-value=0.072  Score=51.65  Aligned_cols=38  Identities=11%  Similarity=0.110  Sum_probs=33.6

Q ss_pred             hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705          167 TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVN  204 (557)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  204 (557)
                      .+++..|-....+..++.++.++|++..|-+..++|+-
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf   68 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF   68 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34456899999999999999999999999999999874

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.65  E-value=0.024  Score=50.36  Aligned_cols=95  Identities=28%  Similarity=0.398  Sum_probs=67.6

Q ss_pred             cCcHHHHHHHHHHHHhc----CC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc------CCcchHHHHH
Q 008705          454 LHMLEEAIKCYRRAANC----ND---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER------EGPNMVEALI  520 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~  520 (557)
                      ...+++|+..|.-|+-.    ..   .-+..+..+|++|...|+.+....++++|++.+...-.      ..-+...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            44566677766665532    11   12557888999999999977777777777765443211      1224467888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          521 FLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       521 ~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      .+|.+..+.|++++|..+|.+++.....
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999986433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.60  E-value=0.0053  Score=35.92  Aligned_cols=31  Identities=19%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705          271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPY  301 (557)
Q Consensus       271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  301 (557)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.48  E-value=0.0043  Score=37.24  Aligned_cols=29  Identities=31%  Similarity=0.387  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          518 ALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       518 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ++..||.+|.+.|++++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47889999999999999999999977553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.48  E-value=0.0045  Score=37.15  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=8.3

Q ss_pred             HHHHHHHHhCChHHHHHHHHH
Q 008705          410 GLGQAYEMMHMPLYALHYFRK  430 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~  430 (557)
                      .||.+|..+|++++|+.+|++
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            344444444444444444444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.48  E-value=1.8  Score=47.32  Aligned_cols=332  Identities=10%  Similarity=-0.061  Sum_probs=176.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH-------hhh
Q 008705          179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL-------RMH  251 (557)
Q Consensus       179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~-------~~~  251 (557)
                      +.....++...+.|+.|+..|+++....|...+.+...-                      -.|.....+       ..+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  535 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQF----------------------RLGITLLEKASEQGDPRDF  535 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHH----------------------HhhHHHHHHHHhcCChHHH
Confidence            334556778889999999999999999998877665552                      223333222       357


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc-----chhHHHHHH
Q 008705          252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE-----CFSALSYLA  326 (557)
Q Consensus       252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~  326 (557)
                      ++|+..|+++- ..|.-|--+...|.+|..+|++++-+++|.-+++..|.++..-...-.+.+...     ....+....
T Consensus       536 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  614 (932)
T PRK13184        536 TQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFM  614 (932)
T ss_pred             HHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888763 356667778889999999999999999999999999998876544333322211     001111111


Q ss_pred             HHHHhhCCCChh-----------------------------HHHH-HH-HHHhhhCchHHHHHHHHHHHhcCcCCHHHHH
Q 008705          327 HRVFMTDKYRPE-----------------------------SCCI-IG-NYYSLKGQHEKSVVYFRRALKLDKNYLSAWT  375 (557)
Q Consensus       327 ~~~~~~~~~~~~-----------------------------~~~~-la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  375 (557)
                      --++..-|....                             .... +. .+-+-.|..---...|+++....+-  .+..
T Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  692 (932)
T PRK13184        615 LLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALA  692 (932)
T ss_pred             HHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHH
Confidence            111111111100                             0000 00 0011123333334556666655433  5555


Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhh-----CCCCh--------HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH-
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDI-----NPRDY--------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL-  441 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-  441 (557)
                      ..-.+...+|+++-+.......-+.     .|.+.        ..|..-..+......++++.+.+.   .+.|..... 
T Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  769 (932)
T PRK13184        693 DIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPTLILYA  769 (932)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHHHHHHH
Confidence            5666667888877665544433211     11111        112111223333345555554332   223322211 


Q ss_pred             HHHHH-HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705          442 WIAMA-QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI  520 (557)
Q Consensus       442 ~~~l~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (557)
                      +...+ .++...+..-.-.+++.+++...-............++|....++++|-+.+...-..     ....+...++.
T Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  844 (932)
T PRK13184        770 FDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLD-----LLLDEYSEAFV  844 (932)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChh-----hhccccchHHH
Confidence            11111 1111100112222333333222111111234445566777788889888887543221     12345667888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHh
Q 008705          521 FLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       521 ~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      ..|-.+.-.++-+.|...|..+.
T Consensus       845 ~~~~~~~~~~~~~~~~~~~~~~~  867 (932)
T PRK13184        845 LYGCYLALTEDREAAKAHFSGCR  867 (932)
T ss_pred             HHHHHHHhcCchhHHHHHHhhcc
Confidence            88888889999999999998887

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.47  E-value=0.26  Score=44.11  Aligned_cols=189  Identities=14%  Similarity=0.112  Sum_probs=90.0

Q ss_pred             ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHH
Q 008705          283 REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR  362 (557)
Q Consensus       283 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  362 (557)
                      .+.++|+..|++++++.+...+.-                              -.++-.+..+++..+++++-...|.+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWG------------------------------FKALKQmiKI~f~l~~~~eMm~~Y~q   90 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWG------------------------------FKALKQMIKINFRLGNYKEMMERYKQ   90 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhH------------------------------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence            478899999999999987643311                              01222234444555555555555544


Q ss_pred             HHhcC-----cCCHH-HHHHHhHHHHhcCCchHHHHHHHHHHhh--CCCChHHH----HHHHHHHHHhCChHHHHHHHHH
Q 008705          363 ALKLD-----KNYLS-AWTLMGHEYVEMKNTPAAIDAYRRAVDI--NPRDYRAW----YGLGQAYEMMHMPLYALHYFRK  430 (557)
Q Consensus       363 al~~~-----p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~  430 (557)
                      .+..-     .++.+ ....+-..-....+.+--.++|+..++.  +..+.+.|    ..||.+|+..+.|..-.+.+++
T Consensus        91 lLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq  170 (440)
T KOG1464|consen   91 LLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ  170 (440)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH
Confidence            44321     11111 1111111111223333333333333321  22233333    3567777777766665555555


Q ss_pred             HHhcCCC-----C-------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--hHHHH----HHHHHHHHHcCCHH
Q 008705          431 SVFLQPN-----D-------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIAL----NQLAKLHHALGRDE  492 (557)
Q Consensus       431 a~~~~p~-----~-------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~----~~la~~~~~~g~~~  492 (557)
                      .-.....     +       .+++..-...|..  +++-.+-...|++++.+...  +|.++    -.=|..+.+.|+++
T Consensus       171 Lh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~--qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe  248 (440)
T KOG1464|consen  171 LHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTE--QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFE  248 (440)
T ss_pred             HHHHhccccCchhhhccchhhhhHhhHhhhhhh--hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHH
Confidence            4332211     0       1233333445555  55555666667776655322  22222    22244566667777


Q ss_pred             HHHHHHHHHHH
Q 008705          493 EAAFYYKKDLE  503 (557)
Q Consensus       493 ~A~~~~~~al~  503 (557)
                      +|-.-|=++.+
T Consensus       249 ~AhTDFFEAFK  259 (440)
T KOG1464|consen  249 KAHTDFFEAFK  259 (440)
T ss_pred             HHHhHHHHHHh
Confidence            77666666655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.42  E-value=1.2  Score=45.24  Aligned_cols=112  Identities=20%  Similarity=0.149  Sum_probs=71.0

Q ss_pred             HHHHHhhhCchHHHHHHH----------HHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          343 IGNYYSLKGQHEKSVVYF----------RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~----------~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      .|..+...|+.++|+...          +-+-+++....+.....+..+.....+.-|-+.|.+.=+.        ..+.
T Consensus       709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiV  780 (1081)
T KOG1538|consen  709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLV  780 (1081)
T ss_pred             HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHh
Confidence            345556667777666542          2233344455556666666677777777777777664221        2355


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      +++...+++.+|....++--+.-   +.+++-.|..+..  ..++++|.+.|.+|
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE--~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAE--NDRFEEAQKAFHKA  830 (1081)
T ss_pred             hheeecccchHhHhhhhhCcccc---ccccchHHHHhhh--hhhHHHHHHHHHHh
Confidence            66777888888877665543332   3467777888877  88888888777766

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.37  E-value=0.07  Score=40.92  Aligned_cols=95  Identities=11%  Similarity=-0.005  Sum_probs=70.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-----------h
Q 008705          182 YGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR-----------M  250 (557)
Q Consensus       182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~-----------~  250 (557)
                      ++..++..||+-+|+++.+..+...+.+..+|.-.                      ...|.++..+.           -
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh----------------------~~QG~if~~lA~~ten~d~k~~y   59 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLH----------------------RLQGTIFYKLAKKTENPDVKFRY   59 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHH----------------------HHHhHHHHHHHHhccCchHHHHH
Confidence            46778999999999999999999998887666322                      22344443332           1


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008705          251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN  298 (557)
Q Consensus       251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  298 (557)
                      .-.+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus        60 Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   60 LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            345788899999999988888888888777777778888777777754

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.28  E-value=0.023  Score=37.30  Aligned_cols=39  Identities=26%  Similarity=0.063  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHH
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSE  215 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  215 (557)
                      +.+|.+|..+++.|+|++|..+.+.+++..|.|..+..-
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            468999999999999999999999999999999876543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.27  E-value=0.017  Score=52.32  Aligned_cols=75  Identities=16%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      -...+.-....|+.++|...|+.|+.+.|++++++...|+.....++.-+|-.+|-+++.+.|.+..++.+.+..
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            344555566788889999999999999999999999999988888888889999999999999888888776654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.21  E-value=0.097  Score=43.34  Aligned_cols=85  Identities=15%  Similarity=-0.024  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                      ..+..+..+-...++.+++...+.-.--+.|..+..-..-|.++..  .|++.+|+..|+.+....|..+.+--.++.|+
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~--r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV--RGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH--hCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            3455666667788899999999998888999999999999999999  99999999999999888899898888999999


Q ss_pred             HHcCCHH
Q 008705          486 HALGRDE  492 (557)
Q Consensus       486 ~~~g~~~  492 (557)
                      ..+|+.+
T Consensus        89 ~~~~D~~   95 (160)
T PF09613_consen   89 YALGDPS   95 (160)
T ss_pred             HHcCChH
Confidence            9988865

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.17  E-value=0.39  Score=37.19  Aligned_cols=95  Identities=21%  Similarity=0.156  Sum_probs=53.6

Q ss_pred             HhCChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh-------cCCChH--
Q 008705          417 MMHMPLYALHYFRKSVFLQPN------------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-------CNDSEA--  475 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~--  475 (557)
                      .-|.|++|...+++++....+            |.-++..|+.++..  +|+|++++..-.+++.       ++.+..  
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~--Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG--LGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            345556666666655544311            12345556666666  6666666555555543       333332  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc
Q 008705          476 --IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP  513 (557)
Q Consensus       476 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  513 (557)
                        .+.++.|..+...|+.++|+..|+.+.+.+....+.-|
T Consensus        99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~~  138 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEMP  138 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--T
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCc
Confidence              35567788888899999999999998886654443333

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.15  E-value=0.12  Score=42.82  Aligned_cols=86  Identities=12%  Similarity=-0.120  Sum_probs=77.5

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      ...+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34566677778889999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHH
Q 008705          451 TEQLHMLE  458 (557)
Q Consensus       451 ~~~~~~~~  458 (557)
                      .  +|+.+
T Consensus        90 ~--~~D~~   95 (160)
T PF09613_consen   90 A--LGDPS   95 (160)
T ss_pred             H--cCChH
Confidence            8  88754

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.11  E-value=0.26  Score=44.11  Aligned_cols=188  Identities=14%  Similarity=0.078  Sum_probs=110.3

Q ss_pred             hhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CC-CCcHHHHHHHHHhccc
Q 008705          249 RMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDP-----YR-VDDMDMYSNVLYAKEC  318 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~-~~~~~~~~~~~~~~~~  318 (557)
                      ...++|+..|++++++.+...    .++-++..+.+.+++|++-...|.+++..-.     +. .......-........
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            478899999999999987643    4667888899999999999999988875321     11 1111111111112222


Q ss_pred             hhHHHHHHHHHHhh--CCCChhHH----HHHHHHHhhhCchHHHHHHHHHHHhcCcC------------CHHHHHHHhHH
Q 008705          319 FSALSYLAHRVFMT--DKYRPESC----CIIGNYYSLKGQHEKSVVYFRRALKLDKN------------YLSAWTLMGHE  380 (557)
Q Consensus       319 ~~~~~~~~~~~~~~--~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~  380 (557)
                      .+-+..+++..+..  +..+...|    ..+|.+|+..|+|.+-.+.+++.-.....            -.+++..-...
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            33333333322221  11222333    45788888888877766666554432111            12345555566


Q ss_pred             HHhcCCchHHHHHHHHHHhhCCCC--hHH----HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          381 YVEMKNTPAAIDAYRRAVDINPRD--YRA----WYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       381 ~~~~~~~~~A~~~~~~al~~~p~~--~~~----~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      |...++-.+-...|++++.+...-  +.+    .-.-|..+.+.|+|++|-..|-.|++...
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD  262 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD  262 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence            777777777777788877764332  222    12234556677778888777777776543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.09  E-value=0.12  Score=44.60  Aligned_cols=105  Identities=19%  Similarity=0.132  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705          439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM  515 (557)
Q Consensus       439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (557)
                      ..++..+|..|.+  .|+.++|+++|.++.......   ...+..+..+....|++.....+..++-...... +.....
T Consensus        36 r~~~~~l~~~~~~--~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~  112 (177)
T PF10602_consen   36 RMALEDLADHYCK--IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHH
Confidence            3467788888888  888888888888877654332   4467778888888888888888888887754331 111122


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          516 VEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ......-|..+...++|.+|...|-.+..-.
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            2344456677778889999888887775543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.99  E-value=0.096  Score=39.18  Aligned_cols=42  Identities=26%  Similarity=0.169  Sum_probs=16.2

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 008705          394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ  435 (557)
Q Consensus       394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  435 (557)
                      +++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+
T Consensus        11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d   52 (90)
T PF14561_consen   11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD   52 (90)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            333444444444444444444444444444444444444433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.99  E-value=3.2  Score=45.47  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=73.3

Q ss_pred             HHHHhhhhhhHHHHHHHHhhhcCCchh-hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCC
Q 008705           96 LAKSYFDCREYRRAAHVLRDQTGRRSV-FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTV  174 (557)
Q Consensus        96 la~~~~~~~~y~~A~~~l~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~  174 (557)
                      .-.++...+.|++|+..++++...-|. --..-+.+.+|-. -.+++.+.        .....+.++..+++.+. ..|.
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~  550 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGIT-LLEKASEQ--------GDPRDFTQALSEFSYLH-GGVG  550 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHH-HHHHHHhc--------CChHHHHHHHHHHHHhc-CCCC
Confidence            356788899999999999988642211 1111122333310 11111111        11156777888877755 4688


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNA  212 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a  212 (557)
                      .|.-+.-.|.+|.+.|+++|-+++|.-+++..|.++..
T Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        551 APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            88999999999999999999999999999999998864

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.97  E-value=0.029  Score=50.88  Aligned_cols=111  Identities=18%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM--  418 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--  418 (557)
                      ...+.-....|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+...-..  
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~  199 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSA  199 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHH
Confidence            344555677899999999999999999999999999999999999999999999999999999999988876543221  


Q ss_pred             --CChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhH
Q 008705          419 --HMPLYALHYFRKSVFLQP-NDSRLWIAMAQCYET  451 (557)
Q Consensus       419 --~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~  451 (557)
                        .++-..+..-.+.+..-+ .+......+-..|+.
T Consensus       200 iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~  235 (472)
T KOG3824|consen  200 IDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL  235 (472)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence              122223333333333223 334444555556654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.97  E-value=0.021  Score=37.55  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcH
Q 008705          271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM  306 (557)
Q Consensus       271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  306 (557)
                      .++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            456677777777777777777777777777765443

>PRK10941 hypothetical protein; Provisional

Probab=95.93  E-value=0.094  Score=48.27  Aligned_cols=70  Identities=14%  Similarity=0.013  Sum_probs=45.8

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                      ++-.+|...++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-...
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            3455566666666666666666666666666666666666666666666666666666666666554433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.91  E-value=1.9  Score=42.03  Aligned_cols=120  Identities=13%  Similarity=-0.005  Sum_probs=78.9

Q ss_pred             HHhHHHHhcCC-chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH--HHHHHH---------hcCCC---CHH
Q 008705          376 LMGHEYVEMKN-TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH--YFRKSV---------FLQPN---DSR  440 (557)
Q Consensus       376 ~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~~~~a~---------~~~p~---~~~  440 (557)
                      .-|.-+.+.|. -++|+..++.+++..+.+...-...-.  +-...|.+|+.  .+.+.+         .+.|-   +.+
T Consensus       384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e  461 (549)
T PF07079_consen  384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE  461 (549)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence            34556667776 889999999999999888644322111  11111222211  111111         12222   233


Q ss_pred             HHHHHHH--HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          441 LWIAMAQ--CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       441 ~~~~l~~--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (557)
                      .-+.++.  .++.  .|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++..
T Consensus       462 ian~LaDAEyLys--qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  462 IANFLADAEYLYS--QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4444444  3455  8999999988888888899 799999999999999999999999876

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.90  E-value=0.13  Score=38.44  Aligned_cols=73  Identities=16%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGRDEEAAFYY  498 (557)
Q Consensus       424 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~  498 (557)
                      .+..+++.+..+|++..+.+.+|..+..  .|++++|++.+-.++..++..  ..+...+-.++...|.-+.-..-|
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~--~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA--AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence            4667888999999999999999999999  999999999999999988765  445556666666666544333333

>PRK10941 hypothetical protein; Provisional

Probab=95.88  E-value=0.092  Score=48.34  Aligned_cols=66  Identities=20%  Similarity=0.159  Sum_probs=35.5

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL  441 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  441 (557)
                      ++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|..-++..++..|+++.+
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            344445555555555555555555555555555555555555555555555555555555555444

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.85  E-value=0.048  Score=52.60  Aligned_cols=120  Identities=13%  Similarity=-0.018  Sum_probs=82.3

Q ss_pred             HhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHH
Q 008705          382 VEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI  461 (557)
Q Consensus       382 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~  461 (557)
                      ...|+.-.|-.-...++...|.++......+.+...+|.|+.|...+..+-..-.........+-.....  +|++++|.
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~--l~r~~~a~  377 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG--LARWREAL  377 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc--hhhHHHHH
Confidence            3567777777777778887777777777777788888888887777665544433333344444445555  77777777


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ..-+-.+...-.++++..-.|-....+|-++++..++++.+.
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~  419 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL  419 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence            777777666666666666666666677777777777777776

>smart00028 TPR Tetratricopeptide repeats

Probab=95.82  E-value=0.016  Score=33.19  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhccCCC
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPW  208 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  208 (557)
                      ..++.+|.++...|++++|+..|+++++..|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46889999999999999999999999998885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.64  E-value=0.024  Score=32.46  Aligned_cols=26  Identities=38%  Similarity=0.519  Sum_probs=10.4

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFL  434 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~  434 (557)
                      ..+|.++...++++.|+..++++++.
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            33344444444444444444444333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.58  E-value=0.019  Score=49.75  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 008705          483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTH  553 (557)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a  553 (557)
                      ....+.++.+.|.+.|.+++.       ..|+....|+.+|....+.|+++.|...|++.++++|++..-+
T Consensus         3 ~~~~~~~D~~aaaely~qal~-------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga   66 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE-------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA   66 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh-------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccch
Confidence            445677899999999999999       7899999999999999999999999999999999999886543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=1.3  Score=37.13  Aligned_cols=147  Identities=11%  Similarity=0.078  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705          178 GLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK  257 (557)
Q Consensus       178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~  257 (557)
                      --|+-+.-+.+.++.++|+..|...-+..-.+...+-.                       +-.+.+..+.|+...|+..
T Consensus        60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~-----------------------mr~at~~a~kgdta~AV~a  116 (221)
T COG4649          60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLAR-----------------------MRAATLLAQKGDTAAAVAA  116 (221)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHH-----------------------HHHHHHHhhcccHHHHHHH
Confidence            34556666677777788888777766554444332222                       2347777778888888888


Q ss_pred             HHHHHhcCCC--C--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705          258 YEYLQGTFSF--S--NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD  333 (557)
Q Consensus       258 ~~~~l~~~p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (557)
                      |..+-...|-  -  -.+...-+.++...|-|++.....+.+-.                                 ..+
T Consensus       117 Fdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---------------------------------d~n  163 (221)
T COG4649         117 FDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---------------------------------DGN  163 (221)
T ss_pred             HHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC---------------------------------CCC
Confidence            8877554332  1  12345556666777777766554443211                                 122


Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEY  381 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  381 (557)
                      |.+..+.-.+|..-++.|++.+|...|..... +...+......+.+.
T Consensus       164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            33444455577777788888888888877665 444444444444443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.43  E-value=0.4  Score=36.87  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHH---HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLW---IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      +.-++..|++-+|++..+..+...+++...|   ..-|.++.              +.+...+..+....+.+       
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~--------------~lA~~ten~d~k~~yLl-------   61 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY--------------KLAKKTENPDVKFRYLL-------   61 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH--------------HHHHhccCchHHHHHHH-------
Confidence            4556666777777777777766666555333   22222222              22222222222222222       


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                          .++++|.++..       ..|..+..++.+|.-+....-|+++..-.++++.+..|
T Consensus        62 ----~sve~~s~a~~-------Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p  110 (111)
T PF04781_consen   62 ----GSVECFSRAVE-------LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP  110 (111)
T ss_pred             ----HhHHHHHHHhc-------cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence                35667777776       78888999999999888888899999999999988654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.25  E-value=0.5  Score=40.68  Aligned_cols=122  Identities=13%  Similarity=-0.016  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHhhhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705          156 RELISLERELSTSWKNG--TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN  233 (557)
Q Consensus       156 ~~l~~~~~~l~~~~~~~--~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~  233 (557)
                      ..+..+..+++....+.  ..--.++..+|..|.+.|+.++|++.|.++............                   
T Consensus        14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id-------------------   74 (177)
T PF10602_consen   14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID-------------------   74 (177)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-------------------
Confidence            34455555565543221  122357889999999999999999999998775543322211                   


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC--CCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008705          234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTF--SFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRND  299 (557)
Q Consensus       234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  299 (557)
                         ..+.+..+.+..+++..+...+.++-...  +.+.    .+....|..+...++|..|-..|-.+....
T Consensus        75 ---~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   75 ---MCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             ---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence               12345777788888888888888875532  2222    244566778888999999999987775443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.83  Score=45.80  Aligned_cols=98  Identities=13%  Similarity=0.031  Sum_probs=43.8

Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH-HHhhCCCChHHHHHH------HHHHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR-AVDINPRDYRAWYGL------GQAYEM  417 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------~~~~~~  417 (557)
                      ..+...+....+...+..++..+|.+..+..+++......|....+...+.. +....|++......+      +.....
T Consensus        75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (620)
T COG3914          75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL  154 (620)
T ss_pred             hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence            3333444444444444555555555555555554444444433333333322 444444444333222      444444


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLW  442 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~  442 (557)
                      +|+..++.....++....|.++++.
T Consensus       155 l~~~~~~~~~l~~~~d~~p~~~~~~  179 (620)
T COG3914         155 LGRTAEAELALERAVDLLPKYPRVL  179 (620)
T ss_pred             hccHHHHHHHHHHHHHhhhhhhhhH
Confidence            4444455555555555544444433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.19  E-value=2  Score=43.68  Aligned_cols=178  Identities=15%  Similarity=0.163  Sum_probs=88.6

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCC---H-HHHHHHhHHHHhcCCchHHHHHHHHHHh--hCCCChHHHHHHHHHH
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNY---L-SAWTLMGHEYVEMKNTPAAIDAYRRAVD--INPRDYRAWYGLGQAY  415 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~  415 (557)
                      .+|..+...|++.+|.+.|.+.=..+..-   . --.+-.+..++..|..++-....++--+  .+-+.+.   .-+..+
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmL  713 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEML  713 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHh
Confidence            45666666777777777776532111100   0 1123455666666666655555544322  1112222   234555


Q ss_pred             HHhCChHHHHHHH----------HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          416 EMMHMPLYALHYF----------RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       416 ~~~~~~~~A~~~~----------~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                      ...|+.++|+...          +-+-+++..+.+.+..++..+..  ...+.-|.+.|++.-.        ...+..++
T Consensus       714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~--l~~~gLAaeIF~k~gD--------~ksiVqlH  783 (1081)
T KOG1538|consen  714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK--LDSPGLAAEIFLKMGD--------LKSLVQLH  783 (1081)
T ss_pred             hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh--ccccchHHHHHHHhcc--------HHHHhhhe
Confidence            6667777666543          22223333344445555555555  5555555555554421        12344455


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      ...+++.+|...-++.-+          -.+.+++-.|+.+....+|++|.+.|.++
T Consensus       784 ve~~~W~eAFalAe~hPe----------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  784 VETQRWDEAFALAEKHPE----------FKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             eecccchHhHhhhhhCcc----------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            566666666655443222          12345555555555555555555555554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.08  E-value=3.9  Score=40.42  Aligned_cols=96  Identities=11%  Similarity=0.001  Sum_probs=69.3

Q ss_pred             HHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 008705          446 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL--GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA  523 (557)
Q Consensus       446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  523 (557)
                      -..+..  .|-+.+|...|.+...+.|-....+..+..+-..+  -+..-+..+|+.++..       ...+++.|...-
T Consensus       467 l~~~~e--~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-------fg~d~~lw~~y~  537 (568)
T KOG2396|consen  467 LDWAYE--SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-------FGADSDLWMDYM  537 (568)
T ss_pred             HHHHHH--hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-------hCCChHHHHHHH
Confidence            344445  67788999999988888887766666555543222  2367778888888873       337788888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          524 THCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      ......|..+.+-..|.+|++.-.+..
T Consensus       538 ~~e~~~g~~en~~~~~~ra~ktl~~~~  564 (568)
T KOG2396|consen  538 KEELPLGRPENCGQIYWRAMKTLQGES  564 (568)
T ss_pred             HhhccCCCcccccHHHHHHHHhhChhh
Confidence            888889999999999998887644433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.01  E-value=0.054  Score=49.28  Aligned_cols=87  Identities=16%  Similarity=0.179  Sum_probs=65.8

Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH-HhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705          325 LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL-MGHEYVEMKNTPAAIDAYRRAVDINPR  403 (557)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~  403 (557)
                      .+.+.....+.++..|...+.+....|.+.+--..|.++++.+|.+.+.|.. -+..+...++++.+...|.+++..+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3444455566778888888877777788888888888888888888888776 556677778888888888888888888


Q ss_pred             ChHHHHHH
Q 008705          404 DYRAWYGL  411 (557)
Q Consensus       404 ~~~~~~~l  411 (557)
                      ++..|...
T Consensus       175 ~p~iw~ey  182 (435)
T COG5191         175 SPRIWIEY  182 (435)
T ss_pred             CchHHHHH
Confidence            88877644

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=1.5  Score=44.15  Aligned_cols=139  Identities=15%  Similarity=0.166  Sum_probs=105.7

Q ss_pred             hCchHHHHHHHHHHHhcCcCCHHHHHH--HhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHH
Q 008705          350 KGQHEKSVVYFRRALKLDKNYLSAWTL--MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY  427 (557)
Q Consensus       350 ~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  427 (557)
                      .+...-++..+...+.+++.++..+..  +...+...+....+.-..+.++..+|.+..+..+|+.+....|....+...
T Consensus        44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~  123 (620)
T COG3914          44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD  123 (620)
T ss_pred             cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence            344444666666666777777766433  466667778888889999999999999999999999988887777666655


Q ss_pred             HHH-HHhcCCCCHHHHHHH------HHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705          428 FRK-SVFLQPNDSRLWIAM------AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR  490 (557)
Q Consensus       428 ~~~-a~~~~p~~~~~~~~l------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  490 (557)
                      +.. +....|.+......+      +.....  +|+..++....+++....|.++.+...+.....+.-.
T Consensus       124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs  191 (620)
T COG3914         124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL--LGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS  191 (620)
T ss_pred             HHHHHHhcCcchHHHHhhHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence            555 788888888877666      777777  8999999999999999999998777777666444433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.99  E-value=0.42  Score=38.93  Aligned_cols=69  Identities=10%  Similarity=-0.142  Sum_probs=32.2

Q ss_pred             hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..++.+++...+...--+.|+....-..-|.++...|++.+|+..++....-.+..+..--.++.|+..
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            344444444444444444444444444444444444444444444444444444444444444444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.99  E-value=0.35  Score=39.40  Aligned_cols=82  Identities=17%  Similarity=0.011  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      ......-...++++++...+...--+.|+.+.+-..-|.++..  .|++.+|+..|+....-.+..+...-.++.|+..+
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~--rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA--RGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH--cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            3344444557888888888888777888888888888888888  88888888888888877777777777788888888


Q ss_pred             CCHH
Q 008705          489 GRDE  492 (557)
Q Consensus       489 g~~~  492 (557)
                      |+.+
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            7754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.90  E-value=0.075  Score=48.39  Aligned_cols=88  Identities=8%  Similarity=0.016  Sum_probs=73.5

Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH-HHHHHhhhCchHHHHHHHHHHHhcCcC
Q 008705          291 IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI-IGNYYSLKGQHEKSVVYFRRALKLDKN  369 (557)
Q Consensus       291 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~  369 (557)
                      .|.+.-...|.++..|..++......+.+.....++..++...|.+.+.|.. .+.-+...++++.+...|.+++..+|.
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            4556666778888888888888888888999999999999999999999877 555677788999999999999999999


Q ss_pred             CHHHHHHHh
Q 008705          370 YLSAWTLMG  378 (557)
Q Consensus       370 ~~~~~~~l~  378 (557)
                      .+..|...-
T Consensus       175 ~p~iw~eyf  183 (435)
T COG5191         175 SPRIWIEYF  183 (435)
T ss_pred             CchHHHHHH
Confidence            988886543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.85  E-value=0.38  Score=52.79  Aligned_cols=170  Identities=15%  Similarity=0.092  Sum_probs=125.6

Q ss_pred             HHHHhHHHHhcCCchHHHH------HHHH-HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC--------CCC
Q 008705          374 WTLMGHEYVEMKNTPAAID------AYRR-AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ--------PND  438 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~  438 (557)
                      ....|......|.+.+|.+      .+.. .-.+.|.....+..++.++..+++.++|+..-.++.-+.        |+.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            3455666667777777777      4442 223567778889999999999999999999988876542        445


Q ss_pred             HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc
Q 008705          439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER  510 (557)
Q Consensus       439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (557)
                      ...+.+++.....  .++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.|+........
T Consensus      1015 ~~~y~nlal~~f~--~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFA--VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred             HHHhhHHHHHHHh--ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence            6677888888888  88889999999888765        3444556788999999999999999999999984333222


Q ss_pred             -CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          511 -EGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       511 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                       ..-.....+..+++.+..+|++..|....+....+
T Consensus      1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence             22345666777888888888888777766665543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.85  E-value=0.047  Score=47.46  Aligned_cols=60  Identities=22%  Similarity=0.422  Sum_probs=47.7

Q ss_pred             HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh
Q 008705          346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY  405 (557)
Q Consensus       346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  405 (557)
                      .....++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345667788888888888888888888888888888888888888888888888888763

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.83  E-value=0.086  Score=32.60  Aligned_cols=31  Identities=45%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705          476 IALNQLAKLHHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      .++.++|.+|...|++++|..++++++....
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            4677788888888888888888888887443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=2.1  Score=42.96  Aligned_cols=166  Identities=13%  Similarity=0.107  Sum_probs=98.4

Q ss_pred             cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHH
Q 008705          282 LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFR  361 (557)
Q Consensus       282 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  361 (557)
                      ...|++|...|.-+....+.+.-..                      ++...|+..+....++.+...+|+.+-|....+
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~----------------------lL~ssPYHvdsLLqva~~~r~qgD~e~aadLie  308 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLI----------------------LLISSPYHVDSLLQVADIFRFQGDREMAADLIE  308 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceee----------------------eeccCCcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence            4557788888877776544332111                      123457777888888888888888777777666


Q ss_pred             HHHhc-----C----------------cCCHH---HHHHHhHHHHhcCCchHHHHHHHHHHhhCCC-ChHHHHHHHHHH-
Q 008705          362 RALKL-----D----------------KNYLS---AWTLMGHEYVEMKNTPAAIDAYRRAVDINPR-DYRAWYGLGQAY-  415 (557)
Q Consensus       362 ~al~~-----~----------------p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~-  415 (557)
                      +++-.     .                |.+-.   +.+..-..+...|-+..|.++++-.+.++|. |+-+...+..+| 
T Consensus       309 R~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A  388 (665)
T KOG2422|consen  309 RGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA  388 (665)
T ss_pred             HHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence            66521     1                11111   1222233445678888888888888888887 666655555544 


Q ss_pred             HHhCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHhHHhcCc---HHHHHHHHHHHHhcCC
Q 008705          416 EMMHMPLYALHYFRKSVF-----LQPNDSRLWIAMAQCYETEQLHM---LEEAIKCYRRAANCND  472 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~---~~~A~~~~~~al~~~p  472 (557)
                      .+..+|.--+..++..-.     .-|+.+ .-..++..|..  ...   -+.|...+.+|+...|
T Consensus       389 LrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~--~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  389 LRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLR--KNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHh--cCChhhHHHHHHHHHHHHHhCc
Confidence            345566666666655422     223322 22345555554  333   4567777888877665

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.64  E-value=3.7  Score=37.98  Aligned_cols=80  Identities=14%  Similarity=0.037  Sum_probs=44.4

Q ss_pred             CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH--HhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL--MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      .+|+.+..+|..|...|++.+|..+|-..     ++......  +-......               -.|.....+...+
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~Ra  147 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTK---------------GYPSEADLFIARA  147 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHh---------------cCCcchhHHHHHH
Confidence            47889999999999999999988887532     22222111  11122222               2333444444444


Q ss_pred             H-HHHHhCChHHHHHHHHHHHhc
Q 008705          413 Q-AYEMMHMPLYALHYFRKSVFL  434 (557)
Q Consensus       413 ~-~~~~~~~~~~A~~~~~~a~~~  434 (557)
                      . .|...++...|...+....+.
T Consensus       148 VL~yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  148 VLQYLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            3 466678888888766665544

; PDB: 3LKU_E 2WPV_G.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.64  E-value=0.31  Score=43.38  Aligned_cols=61  Identities=26%  Similarity=0.392  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhHHhcCcH-------HHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          441 LWIAMAQCYETEQLHML-------EEAIKCYRRAANCND------SEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       441 ~~~~l~~~~~~~~~~~~-------~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ++..+|++|..  .|+.       ..|+..|++++....      +...+.+.+|.+..+.|++++|..+|.+++.
T Consensus       120 l~LrlAWlyR~--~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  120 LCLRLAWLYRD--LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            34445555544  4443       344445555554322      2245778888888888999999888888887

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=0.41  Score=48.25  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      +-|.-.++..+|..+++.|...+..-|.|      ......++.+|..+.+.+.|.+++++|-+.+|.++-....+-.+.
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~  438 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF  438 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            34444556666666777666666655544      344556666666677777777777777666666666555555555


Q ss_pred             hHHhcCcHHHHHHHHHHHHh
Q 008705          450 ETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       450 ~~~~~~~~~~A~~~~~~al~  469 (557)
                      ..  .+.-++|+.+..+...
T Consensus       439 ~~--E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  439 LA--EDKSEEALTCLQKIKS  456 (872)
T ss_pred             HH--hcchHHHHHHHHHHHh
Confidence            55  6666666666665543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.25  E-value=0.15  Score=49.97  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc---CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM---KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      -|+-.+..+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.....+++++|....+|+.|+.++..++
T Consensus       380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~  459 (758)
T KOG1310|consen  380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT  459 (758)
T ss_pred             hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence            344444456677888888888888888888888888777765   35566777777888888888888999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCH
Q 008705          420 MPLYALHYFRKSVFLQPNDS  439 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~  439 (557)
                      ++.+|+.+...+....|.+.
T Consensus       460 r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  460 RYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             hHHHhhhhHHHHhhcCchhh
Confidence            99998888887777777553

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.15  E-value=0.61  Score=33.27  Aligned_cols=63  Identities=14%  Similarity=0.005  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705          179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY  258 (557)
Q Consensus       179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~  258 (557)
                      ....|.-++...+.++|+..++++++..+.....|..|+-                      +..+|...|+|.+.+.+-
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~----------------------l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGY----------------------LIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999998888877743                      477899999999988766


Q ss_pred             HHHHh
Q 008705          259 EYLQG  263 (557)
Q Consensus       259 ~~~l~  263 (557)
                      .+-++
T Consensus        67 ~~Q~~   71 (80)
T PF10579_consen   67 LQQLE   71 (80)
T ss_pred             HHHHH
Confidence            55443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.87  E-value=6.3  Score=38.07  Aligned_cols=98  Identities=15%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC--chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----ChHHHHH
Q 008705          353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN--TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----MPLYALH  426 (557)
Q Consensus       353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~  426 (557)
                      .++-+.+...+++.+|+...+|+.+..++.+.+.  +..=+....++++.+|.+..+|...=.+.....    ...+=+.
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~  170 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE  170 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence            4455566666666666666666666666665543  455566666666666666666654444333322    2344556


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          427 YFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      +..+++.-++.+..+|.....++.
T Consensus       171 ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  171 FTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHH
Confidence            666666666666666665555544

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.86  E-value=10  Score=40.10  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=21.4

Q ss_pred             HHHhhhhhhHHHHHHHH----hhhcCCchhhHHHHHHHHh
Q 008705           97 AKSYFDCREYRRAAHVL----RDQTGRRSVFLRCYALYLA  132 (557)
Q Consensus        97 a~~~~~~~~y~~A~~~l----~~~~~~~~~~l~~~~~~l~  132 (557)
                      ---.+++|.++.|..+.    .........|..+...|..
T Consensus       118 Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~  157 (613)
T PF04097_consen  118 IYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS  157 (613)
T ss_dssp             HHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred             HHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence            33445789999999999    3333444556555544444

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.82  E-value=1.6  Score=34.82  Aligned_cols=76  Identities=28%  Similarity=0.246  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH-hCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHH
Q 008705          268 SNYIQAQIAKAQYSLR---EFEQVEVIFEELLR-NDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCII  343 (557)
Q Consensus       268 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (557)
                      +....+.+|+++....   +..+.+.+++.+++ ..|..                                 +-+..+.+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~---------------------------------rRe~lyYL   77 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER---------------------------------RRECLYYL   77 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc---------------------------------chhhhhhh
Confidence            4455677777776654   45667777777776 33332                                 34556667


Q ss_pred             HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH
Q 008705          344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL  376 (557)
Q Consensus       344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  376 (557)
                      +..+++.++|++++.+.+..++..|++..+...
T Consensus        78 Avg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   78 AVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            777888888888888888888888887766544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=93.77  E-value=7.8  Score=38.44  Aligned_cols=92  Identities=12%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHH
Q 008705          195 ARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQ  274 (557)
Q Consensus       195 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  274 (557)
                      -...|+.++...+.+...|...                         .....+.+.+.+--.+|.+++..+|+++++|..
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~y-------------------------i~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~  144 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSY-------------------------IAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIY  144 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHH-------------------------HHHHHHhcchhHHHHHHHHHHHhCCCCchhHHh
Confidence            3457888888888888877665                         333444555888889999999999999999999


Q ss_pred             HHHHHHhccc-HHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705          275 IAKAQYSLRE-FEQVEVIFEELLRNDPYRVDDMDMYSN  311 (557)
Q Consensus       275 la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~  311 (557)
                      -|.-.+..+. .+.|..+|.+.++.+|+.+..+..+-.
T Consensus       145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            9988887776 899999999999999998877655443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.76  E-value=0.93  Score=45.83  Aligned_cols=95  Identities=17%  Similarity=0.251  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      +.+-|.-.++..+|..+++.|...+..-|.|      ......++.||..  +.+.+.|+++++.|-+.+|.++-....+
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~--L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK--LEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            3445667788999999999999999887766      3466788999999  9999999999999999999999988888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Q 008705          482 AKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      -.+....|+-++|+.+..+....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            88999999999999998887764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.72  E-value=0.64  Score=35.17  Aligned_cols=52  Identities=27%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             cCcHHHHHHHHHHHHhcCC---------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705          454 LHMLEEAIKCYRRAANCND---------SEAIALNQLAKLHHALGRDEEAAFYYKKDLERM  505 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (557)
                      .|++.+|++.+.+.+....         ....++.++|.++...|++++|+..++++++..
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            6778888777777665421         123467788888899999999999999998843

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.68  E-value=0.29  Score=48.13  Aligned_cols=96  Identities=18%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM---HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  454 (557)
                      |.-.+..+....|+..|.+++...|.....+.+.+.++.+.   |+.-.|+.-+..+++++|....+|+.|+.++..  +
T Consensus       381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e--l  458 (758)
T KOG1310|consen  381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE--L  458 (758)
T ss_pred             ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH--H
Confidence            33344455677899999999999999988888888888765   566678888889999999999999999999999  9


Q ss_pred             CcHHHHHHHHHHHHhcCCChH
Q 008705          455 HMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~p~~~  475 (557)
                      +++.+|+.+...+....|.+.
T Consensus       459 ~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  459 TRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             hhHHHhhhhHHHHhhcCchhh
Confidence            999999999988887777543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.67  E-value=3.1  Score=40.07  Aligned_cols=167  Identities=14%  Similarity=0.149  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHhHHHH------------hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC-
Q 008705          354 EKSVVYFRRALKLDKNYLSAWTLMGHEYV------------EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM-  420 (557)
Q Consensus       354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-  420 (557)
                      +++++.=.+.+..+|+...+|...-.++.            ...-.++-+.+...+++.+|++..+|+.+..++.+.+. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            34556666666667776666554322222            22245677888899999999999999999999987764 


Q ss_pred             -hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH------cCCH
Q 008705          421 -PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA------LGRD  491 (557)
Q Consensus       421 -~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~~  491 (557)
                       +..=+.+++++++.+|.+..+|...-.+.....  .....+-+.+..+++..++.+..+|.....++..      .|+ 
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~-  204 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN-  204 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc-
Confidence             578899999999999999888877665554400  2224566788899999899998898888777653      232 


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 008705          492 EEAAFYYKKDLERMEAEEREGPNMVEALIF  521 (557)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  521 (557)
                      .-....+.+-++......-.+|++..+|+.
T Consensus       205 ~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  205 FMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            011233333333333333368888888876

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.65  E-value=0.13  Score=31.81  Aligned_cols=30  Identities=40%  Similarity=0.441  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          516 VEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      ..++.++|.+|..+|++++|..++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999875

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.46  E-value=1.2  Score=49.23  Aligned_cols=165  Identities=16%  Similarity=0.101  Sum_probs=125.4

Q ss_pred             HHHHHHHhhhCchHHHHH------HHH-HHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--------CCCh
Q 008705          341 CIIGNYYSLKGQHEKSVV------YFR-RALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN--------PRDY  405 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~------~~~-~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~  405 (557)
                      ...|......|.+.+|.+      .+. ..-.+.|.....+..++.++...+++++|+..-.++.-+.        |+..
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            445555566677776766      444 2233467778889999999999999999999988876542        4456


Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-----
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-----  472 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p-----  472 (557)
                      ..+.+++...+..++...|+..+.++..+        .|.-.....+++.++..  .++++.|+++.+.|.....     
T Consensus      1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~--v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG--VEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred             HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhcCc
Confidence            77888998889999999999999888764        35555567888888888  8999999999999988632     


Q ss_pred             ---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705          473 ---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA  507 (557)
Q Consensus       473 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (557)
                         .....+..+++++...+++..|....+.....+..
T Consensus      1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred             cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence               22446777888888888888888877777665443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.37  E-value=7.7  Score=40.98  Aligned_cols=56  Identities=16%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc
Q 008705          311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL  366 (557)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  366 (557)
                      .++..+..+.-|..+++..........+++...|..++.+|++++|...|-+++..
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            33444444444444444422222224456677888888999999999888888764

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.35  E-value=4.3  Score=34.14  Aligned_cols=142  Identities=15%  Similarity=0.017  Sum_probs=95.8

Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhCChH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY--RAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~  422 (557)
                      .-|...+.-.++-..|..++++               ...+..++|+..|...-+-+-...  -+.+..|.+....|+..
T Consensus        47 y~yw~~s~as~sgd~flaAL~l---------------A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta  111 (221)
T COG4649          47 YTYWQTSRASKSGDAFLAALKL---------------AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA  111 (221)
T ss_pred             eehhcccccccchHHHHHHHHH---------------HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH
Confidence            3344555555555555555543               355678888888887766554443  34566778888889999


Q ss_pred             HHHHHHHHHHhcCCC--CH--HHHHHHHHHHhHHhcCcHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705          423 YALHYFRKSVFLQPN--DS--RLWIAMAQCYETEQLHMLEEAIKCYRRAA-NCNDSEAIALNQLAKLHHALGRDEEAAFY  497 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~--~~--~~~~~l~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~  497 (557)
                      .|+..|..+-.-.|.  -.  .+...-+.++..  .|.|++-....+..- ..+|-...+...||..-++.|++..|..+
T Consensus       112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD--~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~  189 (221)
T COG4649         112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD--NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSW  189 (221)
T ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc--cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHH
Confidence            999999887665432  11  233445666677  888888766655432 22444456778899999999999999999


Q ss_pred             HHHHHH
Q 008705          498 YKKDLE  503 (557)
Q Consensus       498 ~~~al~  503 (557)
                      |.....
T Consensus       190 F~qia~  195 (221)
T COG4649         190 FVQIAN  195 (221)
T ss_pred             HHHHHc
Confidence            998776

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.33  E-value=0.43  Score=36.14  Aligned_cols=62  Identities=19%  Similarity=0.176  Sum_probs=48.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhhhcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          485 HHALGRDEEAAFYYKKDLERMEAEEREG--PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ..+.|++.+|.+.+.+............  .....+...+|.++...|++++|...+++++++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4578999999999999888543322211  1346678889999999999999999999999874

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.25  E-value=1.1  Score=42.85  Aligned_cols=89  Identities=16%  Similarity=0.129  Sum_probs=68.1

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcC--------CH----------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKN--------YL----------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD  404 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~--------~~----------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  404 (557)
                      -|..+++.++|..|..-|..++++..+        .+          .+-..+..+|+.+++.+.|+..-.+.+.++|..
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            466778889999999999999987322        11          123467788888888888888888888888888


Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKS  431 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a  431 (557)
                      +.-+...+.++..+.+|.+|-..+--+
T Consensus       262 frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888877665544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.11  E-value=1.7  Score=34.67  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          517 EALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       517 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      +..+.||.-+.+.|+|+.+..+.+.+++..|+
T Consensus        72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~  103 (149)
T KOG3364|consen   72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPN  103 (149)
T ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence            34444555555555555555555555554433

>PRK11619 lytic murein transglycosylase; Provisional

Probab=93.02  E-value=14  Score=39.19  Aligned_cols=55  Identities=7%  Similarity=-0.137  Sum_probs=41.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      ...+..+...|+...|...+..++.       .  .++.-...++.+..+.|.++.|+....++
T Consensus       411 ~~ra~~L~~~g~~~~a~~ew~~~~~-------~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~  465 (644)
T PRK11619        411 MARVRELMYWNMDNTARSEWANLVA-------S--RSKTEQAQLARYAFNQQWWDLSVQATIAG  465 (644)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHh-------c--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence            4567778888999999999988777       2  23455677888888999988888766544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.00  E-value=3.4  Score=35.89  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=24.5

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhCChHHH
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR----DYRAWYGLGQAYEMMHMPLYA  424 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A  424 (557)
                      ++..+.+|..|. ..+.++|+..+.+++++.+.    +++++..|+.++..+|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            344444444333 33444555555555544322    244555555555555555544

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=92.94  E-value=5.2  Score=33.94  Aligned_cols=163  Identities=18%  Similarity=0.212  Sum_probs=85.2

Q ss_pred             ChhHHHHHHHHHhh-hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHH-----hcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705          336 RPESCCIIGNYYSL-KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV-----EMKNTPAAIDAYRRAVDINPRDYRAWY  409 (557)
Q Consensus       336 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~  409 (557)
                      +|+.+..+|.++.. +.+|++|...|+.--.-+ .++...+.+|..++     ..++...|++.+..+...  +++.+..
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~  109 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACR  109 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHh
Confidence            55666666655543 345566666655543322 23344444444333     123455666666655542  3444555


Q ss_pred             HHHHHHHHh-----C--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH----------------------hcCcHHHH
Q 008705          410 GLGQAYEMM-----H--MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE----------------------QLHMLEEA  460 (557)
Q Consensus       410 ~l~~~~~~~-----~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----------------------~~~~~~~A  460 (557)
                      .+|.++..-     +  +.++|..++.++..+.  +..+-+.|...++.+                      -..+.+.|
T Consensus       110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka  187 (248)
T KOG4014|consen  110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA  187 (248)
T ss_pred             hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence            555544321     1  1445666666665543  222233333333220                      04567778


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHH
Q 008705          461 IKCYRRAANCNDSEAIALNQLAKLHHAL----GRDEEAAFYYKKDLERM  505 (557)
Q Consensus       461 ~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~  505 (557)
                      .++-.+|-++  .++.+..++.+.|..-    ++.++|..+-.++.+..
T Consensus       188 ~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  188 LQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             HHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            8887777766  3466666777766432    36678888777777743

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.78  E-value=6.8  Score=39.33  Aligned_cols=130  Identities=16%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      ...++.++..+|-++.|+.+.+        ++...+   .+.++.|+.+.|.+..++     .++...|..||.....+|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVT--------DPDHRF---ELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence            4456667777777777765432        233333   334567777777664432     336677888888888888


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK  499 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  499 (557)
                      +++-|..+|+++-.        +..+..+|.-  .|+.+.=.+..+.+......+     ..-.++...|+.++.+..+.
T Consensus       362 ~~~lAe~c~~k~~d--------~~~L~lLy~~--~g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  362 NIELAEECYQKAKD--------FSGLLLLYSS--TGDREKLSKLAKIAEERGDIN-----IAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             BHHHHHHHHHHCT---------HHHHHHHHHH--CT-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-HHHHHHHHH
T ss_pred             CHHHHHHHHHhhcC--------ccccHHHHHH--hCCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCCHHHHHHHHH
Confidence            88888888877532        3344555555  666555555544444332211     11223344555555555544


Q ss_pred             H
Q 008705          500 K  500 (557)
Q Consensus       500 ~  500 (557)
                      +
T Consensus       427 ~  427 (443)
T PF04053_consen  427 E  427 (443)
T ss_dssp             H
T ss_pred             H
Confidence            3

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.64  E-value=8.8  Score=35.84  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA  424 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  424 (557)
                      ....+..+..+-++.-..+++++|.+..++..++..-  ..-..+|.+.++++++.....    +...+.....|...+|
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI----YRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccchhh
Confidence            3334445566667777777888888877777776542  334566777777777643221    1122222222222222


Q ss_pred             HHHHHHHHhcCCCCHHH--HHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705          425 LHYFRKSVFLQPNDSRL--WIAMAQCYETEQLHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       425 ~~~~~~a~~~~p~~~~~--~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p  472 (557)
                      .       .....+..+  -..++.|-.+  +|+..+|++.++...+..|
T Consensus       266 ~-------~rRDtnvl~YIKRRLAMCARk--lGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  266 Q-------LRRDTNVLVYIKRRLAMCARK--LGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             h-------hhcccchhhHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhcc
Confidence            1       111122222  2345666666  7777777777766655554

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=92.33  E-value=17  Score=38.49  Aligned_cols=97  Identities=16%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-hHHH
Q 008705          441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI-ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-MVEA  518 (557)
Q Consensus       441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~  518 (557)
                      .+...|.++.. .+++.+.+..++...+...-.... .|.....+-...|+...|..++++++...     ..|+ ...+
T Consensus       463 ~~q~wA~~E~s-l~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~-----~~~~~~~ev  536 (881)
T KOG0128|consen  463 VLQLWAQVEAS-LLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV-----VDPEDALEV  536 (881)
T ss_pred             HHHHHHHHHHH-HhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC-----cCchhHHHH
Confidence            44444555443 267788888888777665544444 67777778888899999999999888731     2343 3456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          519 LIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       519 ~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      +..+-......|.++.....-.+.+
T Consensus       537 ~~~~~r~Ere~gtl~~~~~~~~~~~  561 (881)
T KOG0128|consen  537 LEFFRRFEREYGTLESFDLCPEKVL  561 (881)
T ss_pred             HHHHHHHHhccccHHHHhhhHHhhc
Confidence            6666677777788777666555543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.26  E-value=5.4  Score=36.43  Aligned_cols=201  Identities=11%  Similarity=0.008  Sum_probs=122.6

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcC--------CHHHHHHHhHHHHhcCCchHHHHHH---HHHHhhC--CCChHH
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKN--------YLSAWTLMGHEYVEMKNTPAAIDAY---RRAVDIN--PRDYRA  407 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~---~~al~~~--p~~~~~  407 (557)
                      ..+++-....+++++|+..|.+.+.....        ...+...++.+|...|++..-.+..   +.+....  |....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            45677777888999999999998865211        2345678899999999876543333   3332221  222222


Q ss_pred             HHHHHHHH-HHhCChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhHHhcCcHHHHHHHHHHHHhc------CCCh
Q 008705          408 WYGLGQAY-EMMHMPLYALHYFRKSVFLQPNDSR------LWIAMAQCYETEQLHMLEEAIKCYRRAANC------NDSE  474 (557)
Q Consensus       408 ~~~l~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~l~~~~~~~~~~~~~~A~~~~~~al~~------~p~~  474 (557)
                      ...|..-+ .....++.-+..+...++......+      .-..+..++.+  .|+|.+|+......+..      .++-
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~--~~~YsdalalIn~ll~ElKk~DDK~~L  164 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYK--TGKYSDALALINPLLHELKKYDDKINL  164 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHhhcCccce
Confidence            22222111 1233455555555555543322212      22456677788  99999999887765532      2344


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH--HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL--IFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      ..++..-..+|....+..++...+..+-... ... .-|....+.  ..-|..+....+|..|..+|-.+++-
T Consensus       165 i~vhllESKvyh~irnv~KskaSLTaArt~A-ns~-YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         165 ITVHLLESKVYHEIRNVSKSKASLTAARTLA-NSA-YCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             eehhhhhHHHHHHHHhhhhhhhHHHHHHHHh-hcc-CCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            5677778889999999988888887765521 111 123333333  33366777888999999999998875

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.08  E-value=12  Score=37.87  Aligned_cols=153  Identities=14%  Similarity=0.088  Sum_probs=103.7

Q ss_pred             hCchHHHHHHHHHHHhc------------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----CC----------
Q 008705          350 KGQHEKSVVYFRRALKL------------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----NP----------  402 (557)
Q Consensus       350 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p----------  402 (557)
                      ...|++|...|.-+...            .|-+...+..++.++..+|+.+-|.....+++-.     .|          
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            44567777777766654            4667788999999999999999988888887632     11          


Q ss_pred             ------CC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH----
Q 008705          403 ------RD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQLHMLEEAIKCYRRAA----  468 (557)
Q Consensus       403 ------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al----  468 (557)
                            .+   ..+.+..-+...+.|-+..|.++++-.++++|. ||.+...+..+|.. ...+|+=-++.++..-    
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL-rareYqwiI~~~~~~e~~n~  409 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL-RAREYQWIIELSNEPENMNK  409 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH-HHHhHHHHHHHHHHHHhhcc
Confidence                  11   233344455667789999999999999999998 88776666666653 1566666666666552    


Q ss_pred             -hcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 008705          469 -NCNDSEAIALNQLAKLHHALGR---DEEAAFYYKKDLER  504 (557)
Q Consensus       469 -~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  504 (557)
                       ..-|+.+ .-..+|..|.....   -..|...+.+|+..
T Consensus       410 l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~  448 (665)
T KOG2422|consen  410 LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKH  448 (665)
T ss_pred             HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence             2234432 22345555655554   45677778888774

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.97  E-value=1.1  Score=40.81  Aligned_cols=65  Identities=18%  Similarity=0.051  Sum_probs=39.8

Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY  409 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  409 (557)
                      ..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..+...++..|+++.+-.
T Consensus       189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666554433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.82  E-value=0.26  Score=26.85  Aligned_cols=25  Identities=16%  Similarity=0.200  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFV  200 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~  200 (557)
                      |.+.+.+|.++...|++++|...++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            4578899999999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=91.78  E-value=7.7  Score=35.23  Aligned_cols=62  Identities=8%  Similarity=0.003  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCC
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQY-SLREFEQVEVIFEELLRNDP  300 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p  300 (557)
                      .++|.+....|+|++.+..+.+++..+|. +.+-...+..+|- ..|....+...+........
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~   68 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE   68 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc
Confidence            56799999999999999999999988775 4444555555553 34666666666666555443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.65  E-value=0.26  Score=26.86  Aligned_cols=25  Identities=36%  Similarity=0.297  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          517 EALIFLATHCRAHGRFEEAEVYCTR  541 (557)
Q Consensus       517 ~~~~~la~~~~~~g~~~~A~~~~~~  541 (557)
                      .+.+.+|.++...|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4678899999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.63  E-value=9.6  Score=34.97  Aligned_cols=59  Identities=25%  Similarity=0.189  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~  500 (557)
                      .+...+|..|..  .|++++|+++|+.+......+      ..++..+..|+...|+.+..+.+.-+
T Consensus       179 ~l~~~~A~ey~~--~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  179 YLSLEMAEEYFR--LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            345677888888  888888888888886543222      34667777888888887776665433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=91.63  E-value=21  Score=37.93  Aligned_cols=63  Identities=13%  Similarity=0.016  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhhcCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          476 IALNQLAKLHH-ALGRDEEAAFYYKKDLERMEAEEREGPNMV-EALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       476 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      ..+...|.++. .+++.+.|....+..+.       ..-... ..|+....+-...|+...|..++++|+.-
T Consensus       462 ~~~q~wA~~E~sl~~nmd~~R~iWn~imt-------y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~  526 (881)
T KOG0128|consen  462 EVLQLWAQVEASLLKNMDKAREIWNFIMT-------YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ  526 (881)
T ss_pred             HHHHHHHHHHHHHhhchhhhhHhhhcccc-------CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence            34445555544 34677888887777666       222233 36777788888889999999988888764

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.51  E-value=1.2  Score=42.79  Aligned_cols=89  Identities=8%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             HHHHHhccchhHHHHHHHHHHhhCC--------CCh----------hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH
Q 008705          310 SNVLYAKECFSALSYLAHRVFMTDK--------YRP----------ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL  371 (557)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  371 (557)
                      +...+.++.+..+.--+..+++.-.        ..+          .+.-.+..||...++.+-|+.+-.+.+.++|.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            4456677888888777777766431        211          1234688899999999999999999999999999


Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                      .-+...+.++..+.+|.+|-+.+.-+.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988776654

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.46  E-value=0.57  Score=27.90  Aligned_cols=33  Identities=18%  Similarity=0.066  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHH--HHHHhccCCCC
Q 008705          177 FGLYLYGIVLKDKGNENLARTV--FVESVNSYPWN  209 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p~~  209 (557)
                      +.++.+|..+..+|++++|+..  |.-+...+|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4678899999999999999999  54777777653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.35  E-value=17  Score=36.50  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCC-HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHH
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNY-LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYAL  425 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  425 (557)
                      ....++++++....... ++-|.- ..-...++..+...|-++.|+..-+        |++..+.|+   .+.|+.+.|.
T Consensus       271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~  338 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIAL  338 (443)
T ss_dssp             HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHH
T ss_pred             HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHH
Confidence            34578888877776522 222332 2335566777778888887776532        455555544   5689999888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +..+     ..+++..|..+|.....  .|+++-|.++|+++-.        +..|..+|...|+.+.=.+..+.+..
T Consensus       339 ~~a~-----~~~~~~~W~~Lg~~AL~--~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  339 EIAK-----ELDDPEKWKQLGDEALR--QGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             HHCC-----CCSTHHHHHHHHHHHHH--TTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHH-----hcCcHHHHHHHHHHHHH--cCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            7553     33578899999999999  9999999999998732        34566677777776655555544444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=91.33  E-value=11  Score=34.21  Aligned_cols=55  Identities=16%  Similarity=0.073  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHh-hhcCCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcc
Q 008705          491 DEEAAFYYKKDLERMEA-EEREGPNMVEALIFLATHC-RAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       491 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~  545 (557)
                      .+.|...|++|++.... -.+.+|-.-...++.+..| ...|+.++|....+++++.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            47888899999986655 3344555555666666665 4589999999998888753

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=91.00  E-value=14  Score=34.65  Aligned_cols=196  Identities=10%  Similarity=0.004  Sum_probs=94.1

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705          273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ  352 (557)
Q Consensus       273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  352 (557)
                      ..+.+...+..+..+-++.-..+++++|....++..++.-  ......++..+++++++..    +..+...+.....|.
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~  261 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSP  261 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhcc
Confidence            3344445555666666777777777777766555544421  1112233444444433321    111111111111111


Q ss_pred             hHHHHHHHHHHHhcCcCCHH--HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHhCChHHHHHHH
Q 008705          353 HEKSVVYFRRALKLDKNYLS--AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD--YRAWYGLGQAYEMMHMPLYALHYF  428 (557)
Q Consensus       353 ~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~  428 (557)
                      ..+|.      .+. ..+..  .-..++.+..++|+..+|++.++...+..|-.  ..++-+|..++....-|.+....+
T Consensus       262 ~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  262 QHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             chhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111      111 11222  23457888889999999999999888776632  223344555555444444433333


Q ss_pred             HHHHhcC-CCCHHHHHHHHHHHhH-----------HhcCc---HHHHHHHHHHHHhcCCChHHHHHHH
Q 008705          429 RKSVFLQ-PNDSRLWIAMAQCYET-----------EQLHM---LEEAIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       429 ~~a~~~~-p~~~~~~~~l~~~~~~-----------~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      -+.-++. |.++.+.+.-+.+-.+           .+.|-   -..|++...++.+.+|..|..+..+
T Consensus       335 akYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~  402 (556)
T KOG3807|consen  335 AKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM  402 (556)
T ss_pred             HhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence            3332222 3333222211111100           00221   2357888899999998877655443

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.87  E-value=13  Score=34.31  Aligned_cols=138  Identities=19%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      .++..+..+|..+.+.|++.+|..+|-..     ++......             ..-.+....+-.|.....+...+.+
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~-------------~~ll~~~~~~~~~~e~dlfi~RaVL  149 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAY-------------VMLLEEWSTKGYPSEADLFIARAVL  149 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHH-------------HHHHHHHHHHTSS--HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHH-------------HHHHHHHHHhcCCcchhHHHHHHHH
Confidence            46788999999999999988887776432     12221111             0011122233456666666666554


Q ss_pred             -HhHHhcCcHHHHHHHHHHHHhc----CC-----------ChHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHhhhc
Q 008705          449 -YETEQLHMLEEAIKCYRRAANC----ND-----------SEAIALNQL--AKLHHALGRDEEAAFYYKKDLERMEAEER  510 (557)
Q Consensus       449 -~~~~~~~~~~~A~~~~~~al~~----~p-----------~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (557)
                       |..  .++...|...+....+.    .|           ..|. ++-+  -..-.+.+    +...|....+.......
T Consensus       150 ~yL~--l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~e~~----~~~~F~~L~~~Y~~~L~  222 (260)
T PF04190_consen  150 QYLC--LGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTCERD----NLPLFKKLCEKYKPSLK  222 (260)
T ss_dssp             HHHH--TTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHHHHT-----HHHHHHHHHHTHH---
T ss_pred             HHHH--hcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCch-HHHHHHHHHHHhcC----cHHHHHHHHHHhCcccc
Confidence             445  79999998877666554    32           2222 1111  11122333    23556665554443333


Q ss_pred             CCcchHHHHHHHHHHHHHcCC
Q 008705          511 EGPNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       511 ~~~~~~~~~~~la~~~~~~g~  531 (557)
                      .+|........+|..|+....
T Consensus       223 rd~~~~~~L~~IG~~yFgi~~  243 (260)
T PF04190_consen  223 RDPSFKEYLDKIGQLYFGIQP  243 (260)
T ss_dssp             HHHHTHHHHHHHHHHHH---S
T ss_pred             ccHHHHHHHHHHHHHHCCCCC
Confidence            456777788889999887543

; PDB: 3LKU_E 2WPV_G.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.83  E-value=0.78  Score=27.34  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHhCChHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHY  427 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~  427 (557)
                      |+.+|..+...|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            34444444444444444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.78  E-value=2  Score=39.11  Aligned_cols=72  Identities=21%  Similarity=0.127  Sum_probs=56.7

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ  447 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  447 (557)
                      ++=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.++|.+.-|+..+...++..|+++.+-...+.
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            444567778888888888888888888888888888888888888888888888888888888765544433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.59  E-value=2.2  Score=39.33  Aligned_cols=62  Identities=18%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA  468 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al  468 (557)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|..  .|+...|+..|++.-
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~--~g~~~~ai~~y~~l~  214 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV--NGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--cCCchHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555  555555555555443

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=90.51  E-value=10  Score=32.29  Aligned_cols=55  Identities=16%  Similarity=0.037  Sum_probs=34.9

Q ss_pred             HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHhc
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANC  470 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~~  470 (557)
                      .+....+.+.|..+--++.+++  .+.+-.++...|..+  --++-++|..+-.+|.++
T Consensus       177 ~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  177 LGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             hhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            3444567788888888887764  556666666666541  123566777776666654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.33  E-value=12  Score=32.70  Aligned_cols=161  Identities=14%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             HHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhc---hhHHHHHHHHhhhhc--
Q 008705           96 LAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVN---RELISLERELSTSWK--  170 (557)
Q Consensus        96 la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~--  170 (557)
                      =|.|-+...+.-+....+++..+....+-.+  ..+..-.+..+-+..+ ..+......+   ..+-...+.++++..  
T Consensus        28 Dg~Cr~eRtdLI~~Ry~~~~~pt~~~ky~~l--~~le~Y~kCielAa~I-q~i~~~e~k~~R~~a~~~s~~~l~~L~~~t  104 (203)
T PF11207_consen   28 DGWCRYERTDLIWHRYELKKNPTDKNKYQLL--EALEKYSKCIELAAQI-QHIKQKERKTDRFRALLHSYQELERLQEET  104 (203)
T ss_pred             chhhccHhHHHHHHHHHHhcCCchHHHHHHH--HHHHHHHHHHHHHhcC-eeechHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3777777777777777666643333332221  1122111122222222 1111111111   122222333333322  


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYP-WNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR  249 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~  249 (557)
                      .+..+|.++|.    +...-+-++|...|-++-...- ..++.                         .+.+|..|. ..
T Consensus       105 k~S~dP~llYy----~Wsr~~d~~A~~~fL~~E~~~~l~t~el-------------------------q~aLAtyY~-kr  154 (203)
T PF11207_consen  105 KNSQDPYLLYY----HWSRFGDQEALRRFLQLEGTPELETAEL-------------------------QYALATYYT-KR  154 (203)
T ss_pred             ccCCCccHHHH----HhhccCcHHHHHHHHHHcCCCCCCCHHH-------------------------HHHHHHHHH-cc
Confidence            24667766553    2344445677777776643222 12222                         233455554 67


Q ss_pred             hhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcccHHHHH
Q 008705          250 MHKESLTKYEYLQGTFSF----SNYIQAQIAKAQYSLREFEQVE  289 (557)
Q Consensus       250 ~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~  289 (557)
                      +.++++..+.++++..+.    +++++..++.+++..|+++.|-
T Consensus       155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            889999999999987443    6899999999999999999874

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.24  E-value=2  Score=30.74  Aligned_cols=29  Identities=17%  Similarity=0.108  Sum_probs=17.1

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705          274 QIAKAQYSLREFEQVEVIFEELLRNDPYR  302 (557)
Q Consensus       274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~  302 (557)
                      ..|.-+++..+.++|+..++++++..++.
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~   39 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDR   39 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCCh
Confidence            34444555666666666666666665553

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.21  E-value=0.64  Score=29.15  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhhcCCc
Q 008705           93 FYLLAKSYFDCREYRRAAHVLRDQTGRR  120 (557)
Q Consensus        93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~  120 (557)
                      .+-||++|+.+|+++.|..+|+.+....
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            4679999999999999999999987533

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.78  E-value=0.61  Score=28.16  Aligned_cols=29  Identities=14%  Similarity=0.020  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 008705          177 FGLYLYGIVLKDKGNENLARTVFVESVNS  205 (557)
Q Consensus       177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~  205 (557)
                      .++..+|.+-...++|++|+.-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.53  E-value=1.9  Score=39.74  Aligned_cols=63  Identities=21%  Similarity=0.291  Sum_probs=43.7

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVF  433 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  433 (557)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            345566666667777777777777777777777777777777777777777777777766654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.47  E-value=0.66  Score=28.00  Aligned_cols=28  Identities=32%  Similarity=0.587  Sum_probs=16.1

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDI  400 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~  400 (557)
                      ++..+|.+-+..++|++|+.-|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4455556666666666666666655543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.29  E-value=26  Score=38.17  Aligned_cols=165  Identities=17%  Similarity=0.136  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhc----CcCCHHHHHHHhHHHHhcCCc--hHHHHHHHHHHhhCCCChH------
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKL----DKNYLSAWTLMGHEYVEMKNT--PAAIDAYRRAVDINPRDYR------  406 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~~~------  406 (557)
                      -+..++.+|...|++++|++.+.+...-    ++.....+-.+-......+..  +-..++-.-.+..+|....      
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            3566888999999999999999998873    333334444444444455544  5555555555555554310      


Q ss_pred             -----HH--HHHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhHHh------cCcHHHHHHH--HHHHHh-
Q 008705          407 -----AW--YGLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQ------LHMLEEAIKC--YRRAAN-  469 (557)
Q Consensus       407 -----~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~------~~~~~~A~~~--~~~al~-  469 (557)
                           .-  .....-|......+-++.+++.++..+.. +...+..+...|...-      .++-+++.+.  .++... 
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~  665 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF  665 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence                 00  11122345667778889999999887655 3444455555554300      1222233333  222222 


Q ss_pred             ------cCCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          470 ------CNDS-------EAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       470 ------~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                            .+|.       ....+...+.++.++|+.++|+..|-..+.
T Consensus       666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence                  1221       134677888889999999999999887776

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.17  E-value=1.7  Score=40.71  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          356 SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       356 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      |..+|.+|..+.|.....+..+|.++...|+.-.|+=+|-+++-.....+.+..+|...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666655555554433344555555555544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.25  E-value=23  Score=33.38  Aligned_cols=128  Identities=16%  Similarity=0.050  Sum_probs=77.5

Q ss_pred             CchHHHHHHHHHHHhcCc-CCHHHHHHHhHHHHh-----cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705          351 GQHEKSVVYFRRALKLDK-NYLSAWTLMGHEYVE-----MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA  424 (557)
Q Consensus       351 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  424 (557)
                      +-.+++...+.+++.... .-....-.++.++..     .-++..-..+|.-...+.| ++.+-.+.+.......-.+.+
T Consensus       270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~ag  348 (415)
T COG4941         270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAG  348 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhH
Confidence            445677777777776542 222222223333322     2355555666666666666 444445566666555556667


Q ss_pred             HHHHHHHHhc--CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705          425 LHYFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       425 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      +...+.....  -......+...|..+.+  +|+.++|...|++++.+.++..+..+..
T Consensus       349 La~ve~L~~~~~L~gy~~~h~~RadlL~r--Lgr~~eAr~aydrAi~La~~~aer~~l~  405 (415)
T COG4941         349 LAMVEALLARPRLDGYHLYHAARADLLAR--LGRVEEARAAYDRAIALARNAAERAFLR  405 (415)
T ss_pred             HHHHHHhhcccccccccccHHHHHHHHHH--hCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence            7666655443  12334456677888888  8999999999999988887776644433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.89  E-value=29  Score=34.16  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=45.7

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcC---------cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLD---------KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      ..+.+++...|||..|++.++.. +++         +-+...++.+|-+|+.+++|.+|++.|...+-
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888899999999887643 222         22456688999999999999999999998875

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.84  E-value=2  Score=40.28  Aligned_cols=62  Identities=18%  Similarity=0.206  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      |..+|.+|+.+.|.+...++.+|.++...|+.-.|+.+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67788888888888888888888888888888888888888886655556677777766654

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.70  E-value=4.4  Score=37.12  Aligned_cols=69  Identities=23%  Similarity=0.142  Sum_probs=55.5

Q ss_pred             HHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705          442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG  512 (557)
Q Consensus       442 ~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (557)
                      +...+..|..  .|.+.+|+++.++++.++|-+...+..+-.++...|+--.|...|++.-+.+...-+.+
T Consensus       282 lgkva~~yle--~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~  350 (361)
T COG3947         282 LGKVARAYLE--AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID  350 (361)
T ss_pred             HHHHHHHHHH--cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence            4455667777  89999999999999999998888888888999999998888888888777655544443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.65  E-value=6.6  Score=36.05  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV  432 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  432 (557)
                      ....+..|.+.|.+.+|+.+.++++.++|-+...+..+-.++...|+--.++..|++.-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34456677788888888888888888888888888888888888888777777776653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.54  E-value=44  Score=35.76  Aligned_cols=145  Identities=13%  Similarity=0.094  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhcc-CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNS-YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      ..++..+|..+++.|++++|...|.+.+.. +|...                               ..-+....+..+-
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-------------------------------i~kfLdaq~IknL  416 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-------------------------------IKKFLDAQRIKNL  416 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-------------------------------HHHhcCHHHHHHH
Confidence            457888999999999999999999999863 33211                               1122333333344


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705          255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY--RVDDMDMYSNVLYAKECFSALSYLAHRVFMT  332 (557)
Q Consensus       255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (557)
                      ..+++.+.+..-.+.+--..+-.||.++++.+.-.+..++    .+.  ..-.....-.++...+-.+.+..++.+... 
T Consensus       417 t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-  491 (933)
T KOG2114|consen  417 TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-  491 (933)
T ss_pred             HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence            4445555444333444445555667777766554333322    221  111233344455555555555555544221 


Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRR  362 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  362 (557)
                         +..   .+-..+...++|++|+.++..
T Consensus       492 ---he~---vl~ille~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  492 ---HEW---VLDILLEDLHNYEEALRYISS  515 (933)
T ss_pred             ---CHH---HHHHHHHHhcCHHHHHHHHhc
Confidence               111   233445567778888777654

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=87.42  E-value=11  Score=30.25  Aligned_cols=45  Identities=9%  Similarity=0.105  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 008705          252 KESLTKYEYLQG--TFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL  296 (557)
Q Consensus       252 ~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  296 (557)
                      .++.++|..+..  +....+..+...|..+...|++.+|..+|+.++
T Consensus        80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence            377888887765  466788889999999999999999999998764

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.96  E-value=1.6  Score=24.80  Aligned_cols=29  Identities=17%  Similarity=0.494  Sum_probs=25.2

Q ss_pred             CChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008705          190 GNENLARTVFVESVNSYPWNWNAWSELKS  218 (557)
Q Consensus       190 g~~~~A~~~~~~al~~~p~~~~a~~~l~~  218 (557)
                      |+.+.|..+|++++...|.+...|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            56889999999999999999999987743

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.30  E-value=30  Score=32.65  Aligned_cols=34  Identities=9%  Similarity=-0.063  Sum_probs=26.3

Q ss_pred             hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 008705          249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL  282 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  282 (557)
                      +-.++|+..-.-+..+.|..++++-..+.+.++.
T Consensus       210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~  243 (415)
T COG4941         210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQE  243 (415)
T ss_pred             hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            3457888888888889999999888777776543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.08  E-value=27  Score=31.98  Aligned_cols=78  Identities=10%  Similarity=0.064  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcC
Q 008705          388 PAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLH  455 (557)
Q Consensus       388 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~  455 (557)
                      ...++.+.+|.......      ......+|..|...|++++|+.+|+.+.......      ..+...+..|+..  .|
T Consensus       155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~--~~  232 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR--LG  232 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH--hC
Confidence            34455555555533211      3344578888888888888888888886543322      3455667777777  88


Q ss_pred             cHHHHHHHHHHH
Q 008705          456 MLEEAIKCYRRA  467 (557)
Q Consensus       456 ~~~~A~~~~~~a  467 (557)
                      +.++.+.+.-+.
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            887777665444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.34  E-value=1.5  Score=27.57  Aligned_cols=27  Identities=19%  Similarity=0.160  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          519 LIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       519 ~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      .+.||..|..+|+.+.|.+.++.++.-
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            367999999999999999999999964

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=85.31  E-value=30  Score=31.80  Aligned_cols=279  Identities=15%  Similarity=0.057  Sum_probs=146.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008705          180 YLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYE  259 (557)
Q Consensus       180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  259 (557)
                      ..++.-..+.+++++|+..|.+.+.....-.+...                 .+.-.....++.+|...|++..--+...
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~-----------------nEqE~tvlel~~lyv~~g~~~~l~~~i~   69 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL-----------------NEQEATVLELFKLYVSKGDYCSLGDTIT   69 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh-----------------hHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            45677778899999999999999976433222111                 0111122335777777777665433333


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh--HHHHHHHHHHhhCCCCh
Q 008705          260 YLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS--ALSYLAHRVFMTDKYRP  337 (557)
Q Consensus       260 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  337 (557)
                      ...       +++...        --.+..++.+..++..|..++.+.....++...=.+.  +-..++         +.
T Consensus        70 ~sr-------e~m~~f--------tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL---------r~  125 (421)
T COG5159          70 SSR-------EAMEDF--------TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL---------RL  125 (421)
T ss_pred             hhH-------HHHHHh--------cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence            221       111111        0112234555556666655544433222211110000  000111         12


Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----CCCChH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKL------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----NPRDYR  406 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~  406 (557)
                      +.-+.+...++..|+|.+|+......+..      .+.-..++..-..+|.+..+..++...+..|-..     .|....
T Consensus       126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlq  205 (421)
T COG5159         126 ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQ  205 (421)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence            34456788889999999998877665432      2445567777788888888888887777665442     232222


Q ss_pred             HH--HHHHHHHHHhCChHHHHHHHHHHHhcCC---CCHHHHH-----HHHHHHhHHhcCcHHHHHHHHH--HHHh-cCCC
Q 008705          407 AW--YGLGQAYEMMHMPLYALHYFRKSVFLQP---NDSRLWI-----AMAQCYETEQLHMLEEAIKCYR--RAAN-CNDS  473 (557)
Q Consensus       407 ~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~-----~l~~~~~~~~~~~~~~A~~~~~--~al~-~~p~  473 (557)
                      +.  ..-|.....-.+|..|-.+|-++++-..   .+..+..     .+..+.    .+..++-...+.  ..++ .+..
T Consensus       206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM----lN~~~evk~vl~~K~t~~~y~~r  281 (421)
T COG5159         206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM----LNRREEVKAVLRNKNTLKHYDDR  281 (421)
T ss_pred             HHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH----HhhHHHHHHHHccchhHhhhhhh
Confidence            22  2234555667788889888888876432   2333322     222222    333343333322  1222 2334


Q ss_pred             hHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 008705          474 EAIALNQLAKLHHA--LGRDEEAAFYYKKDLE  503 (557)
Q Consensus       474 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  503 (557)
                      ...++...+..+..  +.+|..|+.-|..-+.
T Consensus       282 ~I~am~avaea~~NRsL~df~~aL~qY~~el~  313 (421)
T COG5159         282 MIRAMLAVAEAFGNRSLKDFSDALAQYSDELH  313 (421)
T ss_pred             hHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhc
Confidence            45566666666543  3466666666665544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.24  E-value=44  Score=33.59  Aligned_cols=78  Identities=14%  Similarity=0.143  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                      ..-...++.+++.... +.-++..++.+|... ..++-...+++.++.+-++...-..++..|.. ++.+.+..+|.+++
T Consensus        82 ~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~  158 (711)
T COG1747          82 NQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL  158 (711)
T ss_pred             HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence            3334444444444332 334455555555555 34445555555555555554444445444433 55556666666655


Q ss_pred             h
Q 008705          399 D  399 (557)
Q Consensus       399 ~  399 (557)
                      .
T Consensus       159 y  159 (711)
T COG1747         159 Y  159 (711)
T ss_pred             H
Confidence            4

>PF12854 PPR_1: PPR repeat

Probab=84.76  E-value=2.3  Score=24.86  Aligned_cols=30  Identities=17%  Similarity=-0.057  Sum_probs=26.8

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVES  202 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  202 (557)
                      +.|...|..+-..+.+.|+.++|+++|++.
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            567788999999999999999999999874

>PF13041 PPR_2: PPR repeat family

Probab=84.22  E-value=2.1  Score=27.64  Aligned_cols=40  Identities=18%  Similarity=0.015  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705          515 MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHL  554 (557)
Q Consensus       515 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~  554 (557)
                      +...|..+-..+.+.|++++|.+.|++..+..-..+...+
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty   41 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY   41 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            3457888899999999999999999999987655444443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.13  E-value=20  Score=35.27  Aligned_cols=61  Identities=16%  Similarity=0.028  Sum_probs=42.7

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhh-CCCC-hHHHHHHHHH--HHHhCChHHHHHHHHHHHhc
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDI-NPRD-YRAWYGLGQA--YEMMHMPLYALHYFRKSVFL  434 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~-~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~~  434 (557)
                      ....+..++..++|..|...+...... .+.. ...+..+...  +...-++.+|.+.++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            345667778899999999999998885 3322 2344444444  45567888999999887764

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.80  E-value=3  Score=23.54  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=12.4

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          421 PLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       421 ~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      ++.|...|++++...|.++.+|...+
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            44444455555554454444444443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.68  E-value=8.3  Score=27.49  Aligned_cols=44  Identities=25%  Similarity=0.231  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI  520 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (557)
                      .+...|.-+-+.|++.+|+.+|+++++.+.......|+.+.-..
T Consensus         8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~   51 (75)
T cd02682           8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI   51 (75)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence            34455556677889999999999988877666666677665433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=83.44  E-value=41  Score=31.84  Aligned_cols=172  Identities=16%  Similarity=0.100  Sum_probs=93.4

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705          273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ  352 (557)
Q Consensus       273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  352 (557)
                      ..+...|+..++|.+|+.....+++.-..-.                            -.+.-.+++..-...|+...+
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlD----------------------------DK~lLvev~llESK~y~~l~N  183 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLD----------------------------DKILLVEVHLLESKAYHALRN  183 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----------------------------cccceeeehhhhhHHHHHHhc
Confidence            5677888889999999888777664211100                            001122344444555566666


Q ss_pred             hHHHHHHHHHHHhcC-----cCCHHH--HHHHhHHHHhcCCchHHHHHHHHHHhhCC---CChHH---HHHHHHHHHHhC
Q 008705          353 HEKSVVYFRRALKLD-----KNYLSA--WTLMGHEYVEMKNTPAAIDAYRRAVDINP---RDYRA---WYGLGQAYEMMH  419 (557)
Q Consensus       353 ~~~A~~~~~~al~~~-----p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~---~~~l~~~~~~~~  419 (557)
                      ..+|...+..|-...     |....+  =..-|..+....+|..|..+|-++++-..   ++..+   +..+-.+-..++
T Consensus       184 l~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln  263 (411)
T KOG1463|consen  184 LPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN  263 (411)
T ss_pred             chhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc
Confidence            666666555543321     111111  12234555556777777777777776321   12222   222233333445


Q ss_pred             ChHH--HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705          420 MPLY--ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       420 ~~~~--A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p  472 (557)
                      ..++  ++-.-+.+++....+.++...++.++....+.+|+.|+..|..-+..+|
T Consensus       264 ~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  264 LPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             CHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            5544  3333344555566667777777777765335577777777777766554

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=82.87  E-value=51  Score=32.99  Aligned_cols=31  Identities=16%  Similarity=0.084  Sum_probs=23.6

Q ss_pred             ChhH-HHHHHHHHhhhCchHHHHHHHHHHHhc
Q 008705          336 RPES-CCIIGNYYSLKGQHEKSVVYFRRALKL  366 (557)
Q Consensus       336 ~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~  366 (557)
                      .++. ...+|++++..|+|+.|...|+.+.+-
T Consensus       206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~D  237 (414)
T PF12739_consen  206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKD  237 (414)
T ss_pred             ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            4443 456889999999999999998877653

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=82.16  E-value=34  Score=32.18  Aligned_cols=124  Identities=12%  Similarity=0.046  Sum_probs=81.6

Q ss_pred             chhHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---HHHHHHHHHhhhcHHHHhhc
Q 008705          155 NRELISLERELSTSWKN--GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN---WNAWSELKSLCTSIDILNSL  229 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~l  229 (557)
                      +..++++.+.+++..++  ...-.+++..+|..|.+.|+.+.|.+.+.+..+..-.-   .+...               
T Consensus        81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf---------------  145 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVF---------------  145 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHH---------------
Confidence            44566666666666554  23446789999999999999999999998876643211   11111               


Q ss_pred             CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 008705          230 NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP  300 (557)
Q Consensus       230 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  300 (557)
                             ...-+|..|....-..+.++....+++...+   ........|.......+|.+|-.+|-..+....
T Consensus       146 -------~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  146 -------YKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             -------HHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence                   1122466666666666666666666665443   223456667777888899999999888876544

>PF13041 PPR_2: PPR repeat family

Probab=82.11  E-value=7  Score=25.11  Aligned_cols=29  Identities=24%  Similarity=0.196  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ...|..+-..+.+.|++++|.+.|++..+
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            45677788888888888888888888877

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.78  E-value=21  Score=31.55  Aligned_cols=72  Identities=6%  Similarity=-0.029  Sum_probs=60.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                      ...+.+.+...+++...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|+.......+.+..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li   79 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI   79 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            345677888999999999999999999998888999999999999999999999999998766555554443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=80.35  E-value=1.1e+02  Score=34.49  Aligned_cols=108  Identities=18%  Similarity=0.033  Sum_probs=55.0

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH---HHHHHHH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW---IAMAQCY  449 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~  449 (557)
                      .+...|..+.+.+.+++|.-.|+++=++.    .    --.+|...|++.+|+....+.   .+.-....   ..|+.-+
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle----k----Al~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGKLE----K----ALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhccHH----H----HHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence            34445555556666666655555442211    1    123444556666666655443   22222222   4555556


Q ss_pred             hHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          450 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       450 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (557)
                      ..  .+++-+|-+.....+. +|....      .+|.+...|++|+..-..
T Consensus      1010 ~e--~~kh~eAa~il~e~~s-d~~~av------~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VE--QRKHYEAAKILLEYLS-DPEEAV------ALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             HH--cccchhHHHHHHHHhc-CHHHHH------HHHhhHhHHHHHHHHHHh
Confidence            66  7888888777776654 233222      223344456666655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	557
3zn3_A	291	N-terminal Domain Of S. Pombe Cdc23 Apc Subunit Len		1e-28
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-14
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-11
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-12
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-11
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-10
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		3e-09
3as8_A	186	Mama Msr-1 P41212 Length = 186		2e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-06
3asd_A	200	Mama R50e Mutant Length = 200		4e-06
3as4_A	186	Mama Amb-1 C2221 Length = 186		5e-06
3asg_A	186	Mama D159k Mutant 2 Length = 186		7e-06
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		1e-05
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		1e-05
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		1e-05
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		1e-05
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		1e-05
3cvq_A	327	Structure Of Peroxisomal Targeting Signal 1 (pts1)		1e-05
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		1e-05
3cv0_A	327	Structure Of Peroxisomal Targeting Signal 1 (Pts1)		1e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-05
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		1e-04
3hym_B	330	Insights Into Anaphase Promoting Complex Tpr Subdom		3e-04

>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit Length = 291

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 136/302 (45%), Gaps = 33/302 (10%)
Query: 8   RNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDI 67
           RN L   I + S R L  A +WAAE L G+     ++ P                     
Sbjct: 7   RNCLLKCISECSERGLVYAVRWAAEMLNGMNPIEMEHIP--------------------F 46
Query: 68  TSTPVAGVSYVSTPVMEED---EVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFL 124
           +STP     +   P M  +   EVE+ + YLLAKSYFDC+E+ RAA+ L++    +S+FL
Sbjct: 47  SSTPTG--EFDLDPDMANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFL 104
Query: 125 RCYALYLAGXXXXXXXXXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGI 184
           R Y+ YLAG                  ++ NRE   +   L +    G  DP+ LYL G+
Sbjct: 105 RLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGV 164
Query: 185 VLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDIXXXXXX---XXHWMKDYFL 241
           V + +  ++ A       V   P+ W+AW EL     S++            H M   F 
Sbjct: 165 VYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMTKIFY 224
Query: 242 ASAYQELRMHKESLTKYEYL---QGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
             A  EL  H+ + + YE L   +  F  S Y++ Q A   Y  R+F++ E +FE +L N
Sbjct: 225 VYASHEL--HQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRDFDEAESLFENILTN 282
Query: 299 DP 300
           DP
Sbjct: 283 DP 284

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E+   +GN Y  +G +++++ Y+++AL+LD     AW  +G+ Y +  +   AI+ Y++A
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457
           ++++PR   AWY LG AY        A+ Y++K++ L P  +  W  +   Y  +  +  
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-- 119
Query: 458 EEAIKCYRRA 467
           +EAI+ Y++A
Sbjct: 120 DEAIEYYQKA 129

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
           AW  +G+ Y +  +   AI+ Y++A++++PR   AWY LG AY        A+ Y++K++
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 492
            L P  +  W  +   Y  +  +  +EAI+ Y++A   +   A A   L   ++  G  +
Sbjct: 63  ELDPRSAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 493 EAAFYYKKDLE 503
           EA  YY+K LE
Sbjct: 121 EAIEYYQKALE 131

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 64/103 (62%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E+   +GN Y  +G +++++ Y+++AL+LD N   AW  +G+ Y +  +   AI+ Y++A
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440
           ++++P +  AWY LG AY        A+ Y++K++ L PN++ 
Sbjct: 70  LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
           N   AW  +G+ Y +  +   AI+ Y++A++++P +  AWY LG AY        A+ Y+
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488
           +K++ L PN++  W  +   Y  +  +  +EAI+ Y++A   + + A A   L       
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Query: 489 G 489
           G
Sbjct: 125 G 125

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 63/98 (64%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +GN Y  +G ++K++ Y+++AL+LD N  SAW  +G+ Y +  +   AI+ Y++A++++P
Sbjct: 15  LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440
            + +AWY  G AY        A+  ++K++ L PN+++
Sbjct: 75  NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
           N   AW  +G+ Y +  +   AI+ Y++A++++P +  AWY LG AY        A+ Y+
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488
           +K++ L PN+++ W      Y  +  +  ++AI+ Y++A   + + A A   L       
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDY--QKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Query: 489 G 489
           G
Sbjct: 125 G 125

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 62/103 (60%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E+   +GN Y  +G +++++ Y+++AL+L  N   AW  +G+ Y +  +   AI+ Y++A
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440
           +++ P +  AWY LG AY        A+ Y++K++ L PN++ 
Sbjct: 70  LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 131/323 (40%), Gaps = 51/323 (15%)
Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333
           ++A  +Y   +FE  E    +L R +P     + + S++ +  +C   L   AH   +  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF--QC-RRLDRSAHFSTLAI 60
Query: 334 KYRP---ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
           K  P   E+   +GN Y  +GQ ++++ ++R AL+L  +++  +  +    V   +   A
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 391 IDAYRRAVDINPRDY----------------------------------RAWYGLGQAYE 416
           + AY  A+  NP  Y                                   AW  LG  + 
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476
                  A+H+F K+V L PN    +I +      ++  + + A+  Y RA + + + A+
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV--LKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE 536
               LA +++  G  + A   Y++ +E         P+  +A   LA   +  G   EAE
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-------PHFPDAYCNLANALKEKGSVAEAE 291
Query: 537 -VYCTRL-LDYTGPVSFTHLKNL 557
             Y T L L  T   S  +L N+
Sbjct: 292 DCYNTALRLCPTHADSLNNLANI 314

>pdb|3AS8|A Chain A, Mama Msr-1 P41212 Length = 186

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
           +S    +  +V+  D +  E    +G  Y   G  ++      R++    + +   T++G
Sbjct: 24  YSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
             YV+++    A+    +  + NP ++   + LG A + +     A+  F+ ++ L+PN+
Sbjct: 84  LTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
            ++  A+A  Y  EQ+   EEA+  +++A   ++  A+ L
Sbjct: 144 GKVHRAIAYSY--EQMGSHEEALPHFKKANELDERSAVEL 181

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 47/74 (63%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +GN Y  +G +++++ Y+++AL+LD N   AW  +G+ Y +  +   AI+ Y++A++++P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 403 RDYRAWYGLGQAYE 416
            +  A   LG A +
Sbjct: 75  NNAEAKQNLGNAKQ 88

>pdb|3ASD|A Chain A, Mama R50e Mutant Length = 200

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
           +S    L  +V+  D +  +    +G  Y   G  ++      R+L    + +   T++G
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
             YV+++    A+    +  + NP ++   + LG A + +     A+  F+ ++ L+PN+
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
            ++  A+A  Y  EQ+   EEA+  +++A   ++  ++ L
Sbjct: 144 GKVHRAIAFSY--EQMGRHEEALPHFKKANELDEGASVEL 181

>pdb|3AS4|A Chain A, Mama Amb-1 C2221 Length = 186

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
           +S    L  +V+  D +  +    +G  Y   G  ++      R+L    + +   T++G
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
             YV+++    A+    +  + NP ++   + LG A + +     A+  F+ ++ L+PN+
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
            ++  A+A  YE    H  EEA+  +++A   ++  ++ L
Sbjct: 144 GKVHRAIAFSYEQMGRH--EEALPHFKKANELDEGASVEL 181

>pdb|3ASG|A Chain A, Mama D159k Mutant 2 Length = 186

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
           +S    L  +V+  D +  +    +G  Y   G  ++      R+L    + +   T++G
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
             YV+++    A+    +  + NP ++   + LG A + +     A+  F+ ++ L+PN+
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
            ++  A+A  YE    H  EEA+  +++A   ++  ++ L
Sbjct: 144 GKVHRAIAFSYEQMGRH--EEALPHFKKANELDEGASVEL 181

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
           P+  C +G  ++L G+++K+V  F  AL +  N    W  +G        +  A+ AYRR
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
           A+++ P   R+ Y LG +   +     A+ +F +++ +Q
Sbjct: 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
           P+  C +G  ++L G+++K+V  F  AL +  N    W  +G        +  A+ AYRR
Sbjct: 168 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 227
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
           A+++ P   R+ Y LG +   +     A+ +F +++ +Q
Sbjct: 228 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 266

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNT 387
           +V   D    E+   +G  Y   G    ++   ++ + LD     A+ ++G     +   
Sbjct: 30  KVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89
Query: 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447
            AAIDA +RA+ +N     A+Y LG  Y+ M     A+  + K++ ++P   R + ++  
Sbjct: 90  QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL 149
Query: 448 CYETEQLHMLEEAIKCY 464
            YE + L   +EA+K +
Sbjct: 150 AYEGKGLR--DEAVKYF 164

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
           P+  C +G  ++L G+++K+V  F  AL +  N    W  +G        +  A+ AYRR
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
           A+++ P   R+ Y LG +   +     A+ +F +++ +Q
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 275

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
           P+  C +G  ++L G+++K+V  F  AL +  N    W  +G        +  A+ AYRR
Sbjct: 154 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 213
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
           A+++ P   R+ Y LG +   +     A+ +F +++ +Q
Sbjct: 214 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 252

>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 303 VDDMDMYSNVLY--AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           +DD+++ S   +  A   +     L H     +    +    +G  Y+L   ++ +    
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRA++L  +    W  +G           A+DAY RA+DINP   R  Y +  +Y  M  
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 421 PLYALHYFRKSVFLQ 435
              A     +++++Q
Sbjct: 256 YDLAAKQLVRAIYMQ 270

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
           P+  C +G  ++L G+++K+V  F  AL +  N    W  +G        +  A+ AYRR
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
           A+++ P   R+ Y LG +   +     A+ +F +++ +Q
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 275

>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 303 VDDMDMYSNVLY--AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
           +DD+++ S   +  A   +     L H     +    +    +G  Y+L   ++ +    
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
           RRA++L  +    W  +G           A+DAY RA+DINP   R  Y +  +Y  M  
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 421 PLYALHYFRKSVFLQ 435
              A     +++++Q
Sbjct: 256 YDLAAKQLVRAIYMQ 270

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 43/66 (65%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E+   +GN Y  +G +++++ Y+++AL+LD     AW  +G+ Y +  +   AI+ Y++A
Sbjct: 4   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 398 VDINPR 403
           ++++PR
Sbjct: 64  LELDPR 69

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
           AW  +G+ Y +  +   AI+ Y++A++++PR   AWY LG AY        A+ Y++K++
Sbjct: 5   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 433 FLQP 436
            L P
Sbjct: 65  ELDP 68

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
           +G+ ++++++++ A+++   +  A++ MG+   EM++   A+  Y RA+ INP    A  
Sbjct: 56  QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
            L   ++       A+  +R ++ L+P+    +  +A C +
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156

>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain Assembly From A Cdc26-Apc6 Structure Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 1/169 (0%)
Query: 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF 330
           +   +A+  Y   +F+    +   +   DP+    + ++   L      + L YL+H++ 
Sbjct: 24  VVVSLAERHYYNCDFKXCYKLTSVVXEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 331 MTDKYRPESCCIIGNYYSLKG-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA 389
                 P S   +G YY   G ++E +  Y  +A  L+K Y  AW   GH +        
Sbjct: 84  DLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143
Query: 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
           A  AY  A  +    +     +G  Y + +    A  +F +++ + P D
Sbjct: 144 AXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	557
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-30
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-21
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-27
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-21
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-26
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-23
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-26
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-25
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-19
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-24
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-25
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-21
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-22
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-21
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-24
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-23
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-22
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-18
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-23
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-20
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-23
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-22
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-22
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-21
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-20
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-21
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-20
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-20
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-20
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-18
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-18
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-14
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-14
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-11
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-11
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-11
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	7e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-09
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-04
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	5e-05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-04

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  282 bits (724), Expect = 5e-88
 Identities = 80/476 (16%), Positives = 154/476 (32%), Gaps = 33/476 (6%)

Query: 89  EDSDFYLLAKSYFDCREYRRAAHVLRDQTG-RRSVFLRCYALYLAGEKRKEEEMIELEGP 147
             +D + LA+ Y    +Y RA  +L  +    RS   R  A +   +    +  + L G 
Sbjct: 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE 175

Query: 148 LGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYP 207
                   R+      +L        ++    YL G V  +  N + A+  + E++    
Sbjct: 176 TNP----FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 208 WNWNAWSEL-----KSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY---- 258
             + A+ +L      +     D++  LN + +  +D     +   L+++K S        
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291

Query: 259 -EYLQGTFSFSNYIQA--QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA 315
            +YL                A   +    F  V  I  ++L  DPY +D   ++   L+ 
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351

Query: 316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT 375
               + L  +++ +      +  +   +G YY    +  ++  YF ++  +D  +  AW 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411

Query: 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
              H +        AI AY  A  +    +  +  LG  +  +   L A  Y + S  L 
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 436 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA-------ANCNDSEAIALNQLAKLHHAL 488
             D  L   +           ++ AI  ++ A        +     A     L   +  L
Sbjct: 472 QYDPLLLNELGVVA--FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529

Query: 489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
              + A     + L           N       +A           A  +    L 
Sbjct: 530 KMYDAAIDALNQGLL-------LSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 89.1 bits (221), Expect = 8e-19
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 50/292 (17%)

Query: 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234
           +     L+   L + G +N    +  + V+ +P     W                     
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW--------------------- 376

Query: 235 WMKDYFLASAYQELRMHKESLTKYEY---LQGTFSFSNYIQAQIAKAQ--YSLREFEQVE 289
                 +   Y  +    E+   +     +        +  A I  A       E +Q  
Sbjct: 377 ----LAVGIYYLCVNKISEARRYFSKSSTMD-----PQFGPAWIGFAHSFAIEGEHDQAI 427

Query: 290 VIFEELLRNDPYRVDDMDMYSN---VLYAKECFS-ALSYLAHRVFMTDKYRPESCCIIGN 345
             +    R           Y               A  YL    +   +Y P     +G 
Sbjct: 428 SAYTTAARLFQ---GTHLPYLFLGMQHMQLGNILLANEYL-QSSYALFQYDPLLLNELGV 483

Query: 346 YYSLKGQHEKSVVYFRRALKL-------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398
               K   + ++ +F+ AL L       +K + + W  +GH Y ++K   AAIDA  + +
Sbjct: 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543

Query: 399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
            ++  D      +   Y    +P  A+ +  +S+ + PN+      + +  E
Sbjct: 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 24/196 (12%)

Query: 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
           L  H+ +  +    A     + +DI   +    + L Q Y        A     K     
Sbjct: 89  LWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN 147

Query: 436 PNDSRLWIAMAQCYETEQLH--------------MLEEAIKCYRRAANCNDSEAIALNQL 481
            + +  ++A     +                     + A K   +       EA      
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL-EASMCYLR 206

Query: 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
            +++  L   + A   YK+ L              EA   L ++       EE ++    
Sbjct: 207 GQVYTNLSNFDRAKECYKEALM-------VDAKCYEAFDQLVSN-HLLTADEEWDLVLKL 258

Query: 542 LLDYTGPVSFTHLKNL 557
                       L++L
Sbjct: 259 NYSTYSKEDAAFLRSL 274

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/156 (11%), Positives = 47/156 (30%), Gaps = 15/156 (9%)

Query: 239 YFLASAYQELRMHKESLTKYEY---LQGTFSFSNY----IQAQIAKAQYSLREFEQVEVI 291
            FL   + +L     +    +    L             +    +  Q ++  F+   ++
Sbjct: 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504

Query: 292 FEELLRNDPYRVDDMDMYSN---VLYAKECFS-ALSYLAHRVFMTDKYRPESCCIIGNYY 347
            ++   N+         ++N        + +  A+  L ++  +           I   Y
Sbjct: 505 VKKTQSNEK---PWAATWANLGHAYRKLKMYDAAIDAL-NQGLLLSTNDANVHTAIALVY 560

Query: 348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE 383
             K     ++ +   +L +  N + A  L+     E
Sbjct: 561 LHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  224 bits (572), Expect = 9e-69
 Identities = 59/304 (19%), Positives = 105/304 (34%), Gaps = 19/304 (6%)

Query: 251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYS 310
           +K S T           +  +   +A+  Y   +F+    +   ++  DP+    + ++ 
Sbjct: 4   NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63

Query: 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ-HEKSVVYFRRALKLDKN 369
             L      + L YL+H++       P S   +G YY + G  +E +  Y  +A  L+K 
Sbjct: 64  GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT 123

Query: 370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFR 429
           Y  AW   GH +        A+ AY  A  +    +     +G  Y + +    A  +F 
Sbjct: 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183

Query: 430 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA---------ANCNDSEAIALNQ 480
           +++ + P D  +   +       Q    + A K +  A             D     LN 
Sbjct: 184 QALSIAPEDPFVMHEVGVVA--FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241

Query: 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540
           L  +   L +  EA  Y+++ L          P        +       G FE A  Y  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVL-------IPQNASTYSAIGYIHSLMGNFENAVDYFH 294

Query: 541 RLLD 544
             L 
Sbjct: 295 TALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 11/165 (6%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           IG  Y L    + +  +F +AL +          +G    +      A   +  A++   
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 403 RDYR---------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
                            LG     +     AL Y R+++ L P ++  + A+   +    
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS--L 282

Query: 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYY 498
           +   E A+  +  A      +  ++  L         D EA    
Sbjct: 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 45/305 (14%), Positives = 94/305 (30%), Gaps = 47/305 (15%)

Query: 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234
               L ++   L +    N    +  + V+ YP N  +W                     
Sbjct: 55  HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW--------------------- 93

Query: 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAK--AQYSLREFEQVEVIF 292
               + +   Y  +    E   +Y   + T     Y  A IA   +     E +Q    +
Sbjct: 94  ----FAVGCYYLMVGHKNEHARRY-LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148

Query: 293 EELLRNDPYRVDDMDMYSN---VLYAKECFS-ALSYLAHRVFMTDKYRPESCCIIGNYYS 348
               +                           A  + +  + +  +  P     +G    
Sbjct: 149 FTAAQLMK---GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAF 204

Query: 349 LKGQHEKSVVYFRRALKLDK---------NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399
             G+ + +  +F  AL+  K          +      +GH   ++K    A+D +R+A+ 
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264

Query: 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 459
           + P++   +  +G  + +M     A+ YF  ++ L+ +D+     +  C   E      E
Sbjct: 265 LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI--EMYIGDSE 322

Query: 460 AIKCY 464
           A    
Sbjct: 323 AYIGA 327

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  127 bits (322), Expect = 2e-32
 Identities = 54/309 (17%), Positives = 112/309 (36%), Gaps = 21/309 (6%)

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQA--QIAKAQYSLREFEQVEVIFEELLRN 298
           LA    +    + +       Q      +       ++   +  R  ++        ++ 
Sbjct: 5   LAHREYQAGDFEAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 299 DPYRVDDMDMYSN---VLYAKECFS-ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE 354
           +P      + YSN   V   +     A+ +  H + +   +  +    +       G  E
Sbjct: 63  NP---LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF-IDGYINLAAALVAAGDME 118

Query: 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414
            +V  +  AL+ + +     + +G+    +     A   Y +A++  P    AW  LG  
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178

Query: 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474
           +        A+H+F K+V L PN    +I +    +  +  + + A+  Y RA + + + 
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK--EARIFDRAVAAYLRALSLSPNH 236

Query: 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE 534
           A+    LA +++  G  + A   Y++ +E         P+  +A   LA   +  G   E
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------QPHFPDAYCNLANALKEKGSVAE 289

Query: 535 AEVYCTRLL 543
           AE      L
Sbjct: 290 AEDCYNTAL 298

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  125 bits (317), Expect = 7e-32
 Identities = 72/382 (18%), Positives = 140/382 (36%), Gaps = 60/382 (15%)

Query: 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234
           +   L L   +       + +      ++   P    A+                     
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY--------------------- 70

Query: 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQA--QIAKAQYSLREFEQVEVIF 292
                 L + Y+E    +E++  Y          ++I     +A A  +  + E     +
Sbjct: 71  ----SNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 293 EELLRNDPYRVDDMDMYSN---VLY-------AKECFS-ALSYLAHRVFMTDKYRPESCC 341
              L+ +P   D   + S+   +L        AK C+  A+                +  
Sbjct: 125 VSALQYNP---DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWS 173

Query: 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN 401
            +G  ++ +G+   ++ +F +A+ LD N+L A+  +G+   E +    A+ AY RA+ ++
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

Query: 402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 461
           P        L   Y    +   A+  +R+++ LQP+    +  +A   +  +   + EA 
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK--EKGSVAEAE 291

Query: 462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 521
            CY  A     + A +LN LA +    G  EEA   Y+K LE         P    A   
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSN 344

Query: 522 LATHCRAHGRFEEAEVYCTRLL 543
           LA+  +  G+ +EA ++    +
Sbjct: 345 LASVLQQQGKLQEALMHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  122 bits (308), Expect = 1e-30
 Identities = 49/270 (18%), Positives = 95/270 (35%), Gaps = 43/270 (15%)

Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333
           ++A  +Y   +FE  E    +L R +P                                 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDN------------------------------- 32

Query: 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393
                   ++ + +    + ++S  +   A+K +     A++ +G+ Y E      AI+ 
Sbjct: 33  ---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89

Query: 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
           YR A+ + P     +  L  A         A+  +  ++   P+   +   +      + 
Sbjct: 90  YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL--KA 147

Query: 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 513
           L  LEEA  CY +A     + A+A + L  + +A G    A  +++K +          P
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------P 200

Query: 514 NMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
           N ++A I L    +    F+ A     R L
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRAL 230

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  103 bits (258), Expect = 6e-24
 Identities = 55/340 (16%), Positives = 113/340 (33%), Gaps = 43/340 (12%)

Query: 175 DPFGLYLYGIVLKDKGNENLARTVFVESVN---SYPWNWN----AWSELKSLCTSIDILN 227
                   G V K++G    A   +  ++     +   +     A      +  ++    
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

Query: 228 -SLNLNNHWMKDYF-LASAYQELRMHKESLTKYEYLQGTFSFSNYIQA--QIAKAQYSLR 283
            +L  N         L +  + L   +E+   Y   +   +  N+  A   +     +  
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFAVAWSNLGCVFNAQG 183

Query: 284 EFEQVEVIFEELLRNDPYRVDDMDMYSN---VLY-------AKECFS-ALSYLAHRVFMT 332
           E       FE+ +  DP   + +D Y N   VL        A   +  AL          
Sbjct: 184 EIWLAIHHFEKAVTLDP---NFLDAYINLGNVLKEARIFDRAVAAYLRAL---------- 230

Query: 333 DKYRP---ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA 389
               P        +   Y  +G  + ++  +RRA++L  ++  A+  + +   E  +   
Sbjct: 231 -SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289

Query: 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449
           A D Y  A+ + P    +   L            A+  +RK++ + P  +     +A   
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 450 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489
             +Q   L+EA+  Y+ A   + + A A + +      + 
Sbjct: 350 --QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 94.5 bits (236), Expect = 4e-21
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
           + H   +  +  AA     +     P +      L   +        + H+   ++   P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 496
             +  +  +   Y+  +   L+EAI+ YR A             LA    A G  E A  
Sbjct: 65  LLAEAYSNLGNVYK--ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 497 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
            Y   L+         P++      L    +A GR EEA+    + ++
Sbjct: 123 AYVSALQY-------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  107 bits (270), Expect = 5e-27
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 21/211 (9%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            ++   +G      G+++ ++  F RALK +     A   +    +++     A++  + 
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLY-----------ALHYFRKSVFLQPNDSRLWIAM 445
            V   PR    +  L +AY  ++               AL   + +  + P  + L +  
Sbjct: 65  LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

Query: 446 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 505
              Y    L   ++A    ++A    D+     + LA+L+ ++GR +EA   Y K LE+ 
Sbjct: 125 GLVY--ALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQA 181

Query: 506 EAEEREGPNMVEALIFLATHCRAHGRFEEAE 536
                  P  ++  +  A+     G+ EEA 
Sbjct: 182 -------PKDLDLRVRYASALLLKGKAEEAA 205

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 90.7 bits (226), Expect = 5e-21
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 14/178 (7%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA------- 389
           PE+   +       G    ++   +  +     YL  + ++   YV +            
Sbjct: 39  PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG 98

Query: 390 ----AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM 445
               A+   + A  +NPR        G  Y ++     A    ++++ L+     +  A+
Sbjct: 99  YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSAL 157

Query: 446 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
           A+ Y    +  L+EA+  Y +A      +     + A      G+ EEAA     +  
Sbjct: 158 AELYL--SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +   Y   G+ ++++  + +AL+     L          +       A  A       + 
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  107 bits (270), Expect = 1e-26
 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 11/202 (5%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G  Y  +G  E++ V  R+AL++D +   A   +   +        A + YR+A+  + R
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSV--FLQPNDSRLWIAMAQCYETEQLHMLEEAI 461
           + R     G           A     ++    L P  SR++  +       Q+    +A 
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS--LQMKKPAQAK 161

Query: 462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 521
           + + ++   N ++     ++A L +       A  YY    +        G     +L+ 
Sbjct: 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG-------GGQNARSLLL 214

Query: 522 LATHCRAHGRFEEAEVYCTRLL 543
                +     + A  Y  +L 
Sbjct: 215 GIRLAKVFEDRDTAASYGLQLK 236

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 11/186 (5%)

Query: 360 FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419
             +  K       A+  +G  Y++  NT  A    R+A++I+P    A   L   ++   
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDSEAIA 477
            P  A   +RK++     ++R+           +    EEA +    A+        +  
Sbjct: 86  EPKLADEEYRKALASDSRNARVLNNYGGFL--YEQKRYEEAYQRLLEASQDTLYPERSRV 143

Query: 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV 537
              L  +   + +  +A  Y++K L           N     + +A        +  A  
Sbjct: 144 FENLGLVSLQMKKPAQAKEYFEKSLRL-------NRNQPSVALEMADLLYKEREYVPARQ 196

Query: 538 YCTRLL 543
           Y     
Sbjct: 197 YYDLFA 202

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 7/157 (4%)

Query: 385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA 444
           + +        +          A+  LG  Y        A    RK++ + P+ +    A
Sbjct: 17  RGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA 76

Query: 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504
           +A  +  +     + A + YR+A   +   A  LN      +   R EEA     +  + 
Sbjct: 77  LAVVF--QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD 134

Query: 505 MEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
                   P        L        +  +A+ Y  +
Sbjct: 135 TLY-----PERSRVFENLGLVSLQMKKPAQAKEYFEK 166

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 23/223 (10%)

Query: 241 LASAYQELRMHKESLTKYE---YLQGTFSFSNYIQAQ--IAKAQYSLREFEQVEVIFEEL 295
           L   Y +    +++         +       +   A   +A    +  E +  +  + + 
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEID-----PSSADAHAALAVVFQTEMEPKLADEEYRKA 97

Query: 296 LRNDPYRVDDMDMYSN---VLYAKECFS-ALSYLAHRVFMTDKY-RPESCCIIGNYYSLK 350
           L +D     +  + +N    LY ++ +  A   L      T    R      +G      
Sbjct: 98  LASDS---RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM 154

Query: 351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
            +  ++  YF ++L+L++N  S    M     + +    A   Y        ++ R+   
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214

Query: 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
             +  ++      A  Y  +   L P          Q ++ E+
Sbjct: 215 GIRLAKVFEDRDTAASYGLQLKRLYPGS-----LEYQEFQAEK 252

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  107 bits (270), Expect = 2e-26
 Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 18/245 (7%)

Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN---VLYAKECF-SALSYLAH-- 327
           + A   +    + +   +F +L        +   +Y+      Y    +  A   +    
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKY---NSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNT 387
                 K +       G     KGQ   ++  ++ A+  D   L  +  +G  +    N 
Sbjct: 65  SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124

Query: 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447
           P AI    + +     D + +Y LGQAY      + A   F K + L+PN    ++  A+
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184

Query: 448 CYET-EQLHMLEEAIKCYRRAAN--------CNDSEAIALNQLAKLHHALGRDEEAAFYY 498
                +       A   Y +             D    A   +A  +       +A   +
Sbjct: 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244

Query: 499 KKDLE 503
           K  L 
Sbjct: 245 KNILA 249

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  103 bits (260), Expect = 4e-25
 Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 9/214 (4%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVY---FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393
           P         Y    +++ +      +   +   K   + +   G   ++      AI  
Sbjct: 37  PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96

Query: 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
           Y+ AVD +      +  +G  +        A+ Y  K +     D +++  + Q Y    
Sbjct: 97  YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY--Y 154

Query: 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG---RDEEAAFYYKKDLE-RMEAEE 509
                +A   + +      +  I     A+ + A     +   A  YY+K +E       
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214

Query: 510 REGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
           +    ++EA  ++A +   +    +A+     +L
Sbjct: 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 34/268 (12%), Positives = 82/268 (30%), Gaps = 36/268 (13%)

Query: 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQA--QIAKAQYSLREFEQ---VEVIFE 293
           +  A    +   + E++  +   +      N      + A   Y L +++        + 
Sbjct: 7   FRYADFLFKNNNYAEAIEVFN--KLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 294 ELLRNDPYRVDDMDMYSNVLY-------AKECFS-ALSYLAHRVFMTDKYRPESCCIIGN 345
             +     +  D + Y  +L        A + +  A+          D  R +    IG+
Sbjct: 65  SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGS 116

Query: 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY 405
           Y+  KG    ++ Y  + ++        +  +G  Y   K    A  ++ + +++ P  Y
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176

Query: 406 RAWYGLGQAYEMMHMPLY---ALHYFRKSVFLQPNDSRL--------WIAMAQCYETEQL 454
             +    +A            A  Y+ K + +                  +A  Y     
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT--IN 234

Query: 455 HMLEEAIKCYRRAANCNDSEAIALNQLA 482
               +A   ++     + +   A++ L 
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLK 262

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 18/174 (10%), Positives = 45/174 (25%), Gaps = 12/174 (6%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP---LYALHYFR 429
                     +  N   AI+ + +           +      Y  +         +  + 
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 430 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489
             V      S  +    +     +      AI+ Y+ A + + +      Q+    +  G
Sbjct: 65  SKVNATKAKSADFEYYGKIL--MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122

Query: 490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
               A  Y +K +              +    L      +  + +A+    ++L
Sbjct: 123 NFPLAIQYMEKQIRPT-------TTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 32/302 (10%), Positives = 73/302 (24%), Gaps = 61/302 (20%)

Query: 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSEL-----------KSLCTSIDILN 227
            + Y   L    N   A  VF +       +   ++              +        +
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 228 SLNLNNHWMKDYF-LASAYQELRMHKESLTKYEYLQGTFSFSNYIQA--QIAKAQYSLRE 284
            +N       D+        +      ++ +Y+        +  +    QI    Y+   
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ--AAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 285 FEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344
           F       E+ +R       D  ++                                 +G
Sbjct: 124 FPLAIQYMEKQIRPTT---TDPKVFYE-------------------------------LG 149

Query: 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP---AAIDAYRRAVDIN 401
             Y    ++ K+   F + L+L  N    +                  A   Y + +++ 
Sbjct: 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209

Query: 402 PRD--------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
                        A   +   Y +    + A   ++  + L P + +    +    E   
Sbjct: 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269

Query: 454 LH 455
            H
Sbjct: 270 HH 271

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  105 bits (264), Expect = 7e-26
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 9/198 (4%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
               S  G +EK+   F +A++ +K     +    +    +     A+  Y +A++++  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
              A+YG G  Y +  M   A   F K++     +  L+  +       +L   + A+  
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV--KLEQPKLALPY 147

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
            +RA   N+++  A  Q        G  +EA   +    E+        P   +A     
Sbjct: 148 LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-------PGHADAFYNAG 200

Query: 524 THCRAHGRFEEAEVYCTR 541
                    E+A     +
Sbjct: 201 VTYAYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  101 bits (255), Expect = 1e-24
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 2/161 (1%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
             N  S   + E+++ ++ +AL+LD +  +A+   G+ YV  +    A D + +A+    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
            +   +Y LG     +  P  AL Y +++V L  ND+        C       ML+EA+ 
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA--NEGMLDEALS 180

Query: 463 CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
            +      +   A A       +      E+A     K ++
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 96.4 bits (241), Expect = 9e-23
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 2/154 (1%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
             +    GN Y +K  ++++   F +AL+        + ++G   V+++    A+   +R
Sbjct: 91  ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456
           AV++N  D  A +  G       M   AL  F       P  +  +      Y       
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA--YKEN 208

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 490
            E+A++   +A +      +AL+    L H    
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 73.7 bits (182), Expect = 5e-15
 Identities = 36/233 (15%), Positives = 69/233 (29%), Gaps = 26/233 (11%)

Query: 230 NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQA--QIAKAQYSLREFEQ 287
             +   M          E   ++++   +   +               A    S+ E E+
Sbjct: 18  GSHMASMTGGQQMGRGSEFGDYEKAAEAFT--KAIEENKEDAIPYINFANLLSSVNELER 75

Query: 288 VEVIFEELLRNDPYRVDDMDMYSN---VLY-------AKECFS-ALSYLAHRVFMTDKYR 336
               +++ L  D         Y     V         AK+ F  AL              
Sbjct: 76  ALAFYDKALELDS---SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMEN 124

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            +   ++G       Q + ++ Y +RA++L++N   A    G           A+  +  
Sbjct: 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449
             + +P    A+Y  G  Y        AL    K++ +QP+      A     
Sbjct: 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 64.8 bits (159), Expect = 6e-12
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449
           +     R   +         G G  +        A   F K++     D+  +I  A   
Sbjct: 11  SSGLVPRGSHMASMTGGQQMGRGSEFGDYEK---AAEAFTKAIEENKEDAIPYINFANLL 67

Query: 450 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 509
               ++ LE A+  Y +A   + S A A      ++      +EA   ++K L       
Sbjct: 68  --SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA----- 120

Query: 510 REGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
             G    +    L T      + + A  Y  R
Sbjct: 121 --GMENGDLFYMLGTVLVKLEQPKLALPYLQR 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 9/120 (7%)

Query: 424 ALHYFRKSVFLQPNDSRLW--IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481
           + H+   S  L P  S +       Q     +    E+A + + +A   N  +AI     
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63

Query: 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
           A L  ++   E A  +Y K LE          +   A             ++EA+    +
Sbjct: 64  ANLLSSVNELERALAFYDKALELD-------SSAATAYYGAGNVYVVKEMYKEAKDMFEK 116

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  109 bits (274), Expect = 2e-25
 Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 3/199 (1%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            +S   + N    +G  E++V  +R+AL++   + +A + +     +      A+  Y+ 
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456
           A+ I+P    A+  +G   + M     AL  + +++ + P  +     +A  +  +    
Sbjct: 69  AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH--KDSGN 126

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 516
           + EAI  YR A         A   LA     +    +     KK L  + A++ E   + 
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK-LVSIVADQLEKNRLP 185

Query: 517 EALIFLATHCRAHGRFEEA 535
                 +        F +A
Sbjct: 186 SVHPHHSMLYPLSHGFRKA 204

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 97.6 bits (242), Expect = 2e-21
 Identities = 34/177 (19%), Positives = 73/177 (41%), Gaps = 9/177 (5%)

Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
            +  +   + +   E  N   A+  YR+A+++ P    A   L    +       AL ++
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488
           ++++ + P  +  +  M      +++  ++ A++CY RA   N + A A + LA +H   
Sbjct: 67  KEAIRISPTFADAYSNMGNTL--KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545
           G   EA   Y+  L+         P+  +A   LA   +    + + +    +L+  
Sbjct: 125 GNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 76.0 bits (186), Expect = 1e-14
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 9/145 (6%)

Query: 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460
            P    +   L            A+  +RK++ + P  +     +A     +Q   L+EA
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQGKLQEA 62

Query: 461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520
           +  Y+ A   + + A A + +      +   + A   Y + ++         P   +A  
Sbjct: 63  LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-------NPAFADAHS 115

Query: 521 FLATHCRAHGRFEEAEVYCTRLLDY 545
            LA+  +  G   EA       L  
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKL 140

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 64.4 bits (156), Expect = 6e-11
 Identities = 36/264 (13%), Positives = 81/264 (30%), Gaps = 7/264 (2%)

Query: 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
             LA+  +E    +E++  Y      F       + +A       + ++  + ++E +R 
Sbjct: 13  NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72

Query: 299 DPYRVDDMDMYSN---VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEK 355
            P      D YSN    L   +          R    +    ++   + + +   G   +
Sbjct: 73  SP---TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129

Query: 356 SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY 415
           ++  +R ALKL  ++  A+  + H    + +     +  ++ V I               
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHP 189

Query: 416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475
               +   +  + +       N     I +      E    L+ +    R     +D   
Sbjct: 190 HHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGN 249

Query: 476 IALNQL-AKLHHALGRDEEAAFYY 498
              + L   +      D+   F Y
Sbjct: 250 HPTSHLMQSIPGMHNPDKFEVFCY 273

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  100 bits (251), Expect = 1e-24
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 17/176 (9%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL----------------MGHEYVEMKNT 387
            +     GQ+ ++V YFR+ + L+ +    +                  +   Y + +N 
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447
             A   Y+  +   P +        +          AL  + K + L+ ++    I +  
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN 130

Query: 448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
            Y        ++ ++   +  +       A  +         R E+A    +K + 
Sbjct: 131 YYY-LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 99.8 bits (249), Expect = 3e-24
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 23/220 (10%)

Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333
           Q   A     +  Q    F + +  +    D  +MY      K                 
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNI---DRTEMYYWTNVDKN---------------S 50

Query: 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393
           +   +    +   Y     ++K+ ++++  L+   N +          V       A+  
Sbjct: 51  EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM 110

Query: 394 YRRAVDINPRDYRAWYGLGQAY-EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE 452
           Y + + +   +  A   LG  Y          L    K +                    
Sbjct: 111 YEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK--L 168

Query: 453 QLHMLEEAIKCYRRAANCN-DSEAI-ALNQLAKLHHALGR 490
                E+A    ++       +EA   L+++ ++   + R
Sbjct: 169 FTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 78.6 bits (194), Expect = 7e-17
 Identities = 23/182 (12%), Positives = 62/182 (34%), Gaps = 35/182 (19%)

Query: 258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE 317
           +  +      S+ +  ++A A    R +++  + ++ELL+  P   +++D          
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP---NNVDCLEA------ 93

Query: 318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM 377
                                           +GQ + ++  + + L+L+ + L+A   +
Sbjct: 94  -------------------------CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 378 GHEYVEM-KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
           G+ Y    +     ++   + +    +   A Y  G +         A +  +K +   P
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188

Query: 437 ND 438
           + 
Sbjct: 189 ST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 27/167 (16%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
                    +E      A+  +R+ + +N      +Y                  +    
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYY------------------WTNVD 47

Query: 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 492
                 S+L   +A  Y+  +    ++A   Y+       +    L   A++    G+++
Sbjct: 48  KNSEISSKLATELALAYK--KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 493 EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539
           +A   Y+K L+          + + A IFL  +       E+ ++  
Sbjct: 106 DALRMYEKILQL-------EADNLAANIFLGNYYYLTAEQEKKKLET 145

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 27/138 (19%)

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
                  A         A+ YFR+++ L  + + ++                     +  
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYY--------------------WTN 45

Query: 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 526
               ++  +    +LA  +      ++A  +YK+ L+       + PN V+ L   A   
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-------KAPNNVDCLEACAEMQ 98

Query: 527 RAHGRFEEAEVYCTRLLD 544
              G+ ++A     ++L 
Sbjct: 99  VCRGQEKDALRMYEKILQ 116

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  104 bits (261), Expect = 1e-24
 Identities = 31/212 (14%), Positives = 61/212 (28%), Gaps = 20/212 (9%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            E    +G      GQ   ++  F  A+  D +   A+      ++ M  + AA+    +
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ--- 453
            + +      A    G           A   F+K +   P++     A +Q  + ++   
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 454 ----------LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
                           AI    +       +A      A+     G   +A    K    
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS- 181

Query: 504 RMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
                 +   +  EA   ++T     G  E +
Sbjct: 182 ------KLKSDNTEAFYKISTLYYQLGDHELS 207

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 44/327 (13%), Positives = 96/327 (29%), Gaps = 62/327 (18%)

Query: 183 GIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLA 242
           G +L  +G  + A   F + + S P           L  + ++    +           A
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ----------A 127

Query: 243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR 302
               +   +  ++T  + +     +   ++   A+      E  +     +   +     
Sbjct: 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-- 185

Query: 303 VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362
            D+ + +                                 I   Y   G HE S+   R 
Sbjct: 186 -DNTEAFYK-------------------------------ISTLYYQLGDHELSLSEVRE 213

Query: 363 ALKLDKNYLSAWTLM------------GHEYVEMKNTPAAIDAYRRAVDINPRD----YR 406
            LKLD+++   +                 E +       A   Y   +   P       R
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
           +   +   +     P+ A+    + + ++P++       A+ Y      M +EAI+ Y  
Sbjct: 274 SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL--IEEMYDEAIQDYEA 331

Query: 467 AANCNDSEAIALNQLAKLHHALGRDEE 493
           A   N+++      L K    L + ++
Sbjct: 332 AQEHNENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 43/302 (14%), Positives = 98/302 (32%), Gaps = 45/302 (14%)

Query: 239 YFLASAYQELRMHKESLTKYEY---LQGTFSFSNYIQA--QIAKAQYSLREFEQVEVIFE 293
           Y  A+ +  +   K +L        L+      ++  A  Q         + ++ E  F+
Sbjct: 41  YRRATVFLAMGKSKAALPDLTKVIALK-----MDFTAARLQRGHLLLKQGKLDEAEDDFK 95

Query: 294 ELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR----------------P 337
           ++L+++P   ++ +  S ++ A E     S  A   F    Y                  
Sbjct: 96  KVLKSNPSEQEEKEAESQLVKADEMQRLRS-QALDAFDGADYTAAITFLDKILEVCVWDA 154

Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E   +    +  +G+  K++   + A KL  +   A+  +   Y ++ +   ++   R  
Sbjct: 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214

Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLY------------ALHYFRKSVFLQPND----SRL 441
           + ++    R +    Q  ++  +               A   +   +  +P+      R 
Sbjct: 215 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

Query: 442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 501
              +  C+   +     EAI+              AL   A+ +      +EA   Y+  
Sbjct: 275 KERICHCF--SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332

Query: 502 LE 503
            E
Sbjct: 333 QE 334

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 84.6 bits (210), Expect = 6e-18
 Identities = 27/227 (11%), Positives = 70/227 (30%), Gaps = 32/227 (14%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH---------------EYVEMKNTP 388
           G+    +G+ +++   F++ LK + +                         +  +  +  
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448
           AAI    + +++   D        + +     P  A+   + +  L+ +++  +  ++  
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197

Query: 449 YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL------------HHALGRDEEAAF 496
           Y   QL   E ++   R     +           ++                GR  +A  
Sbjct: 198 YY--QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255

Query: 497 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
            Y+  ++    E       V +   +        +  EA   C+ +L
Sbjct: 256 KYESVMK---TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 453 QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512
               L +A+  +  A + +    IA  + A +  A+G+ + A     K +          
Sbjct: 15  AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-------K 67

Query: 513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
            +   A +         G+ +EAE    ++L
Sbjct: 68  MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  106 bits (266), Expect = 2e-24
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 6/208 (2%)

Query: 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW 408
           +     + ++  R A++       AW ++    + M +T A   A +R + ++P    A 
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60

Query: 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468
             LG+          A    +++    P    + + +      E     E A   Y RA 
Sbjct: 61  ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL--EDAGQAEAAAAAYTRAH 118

Query: 469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 528
                E     QL      L               ++ A   +G   VE   FL+    A
Sbjct: 119 QLLPEEPYITAQLLNWRRRLCDWR----ALDVLSAQVRAAVAQGVGAVEPFAFLSEDASA 174

Query: 529 HGRFEEAEVYCTRLLDYTGPVSFTHLKN 556
             +   A      +     P++ T +++
Sbjct: 175 AEQLACARTRAQAIAASVRPLAPTRVRS 202

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 1/147 (0%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
             +  ++ +     G      +  +R L L   +  A   +G      +    A    ++
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY-ETEQLH 455
           A D  P        LG A E       A   + ++  L P +  +   +           
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

Query: 456 MLEEAIKCYRRAANCNDSEAIALNQLA 482
            L+      R A             L+
Sbjct: 143 ALDVLSAQVRAAVAQGVGAVEPFAFLS 169

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  104 bits (262), Expect = 4e-24
 Identities = 36/311 (11%), Positives = 84/311 (27%), Gaps = 14/311 (4%)

Query: 228 SLNLN-NHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAK--AQYSLRE 284
            LNL     +         Q L   +  L      Q        + A  +    + +L  
Sbjct: 64  PLNLTPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALET 121

Query: 285 FEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344
            +++  +  +     P +V  +  +     A E   AL  +  +       +  +    G
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181

Query: 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404
                    ++ +    +A  L    + A    G     ++     +    +A  + P+ 
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

Query: 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY 464
             A    G   + +      L    ++  L P       + +   +   L  ++  +   
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ--ALETVQRLLPVL 299

Query: 465 RRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT 524
            +A      + +A+        AL   +       +            P  V A+     
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-------TPQQVVAIASHDG 352

Query: 525 HCRAHGRFEEA 535
             +A    +  
Sbjct: 353 GKQALETVQRL 363

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  104 bits (261), Expect = 5e-24
 Identities = 18/198 (9%), Positives = 47/198 (23%), Gaps = 9/198 (4%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
                     ++ +    +A  L    + A          ++     +    +A  + P 
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 138

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
              A        + +      L    ++  L P       +       + L  ++  +  
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK--QALETVQRLLPV 196

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
             +A      + +A+        AL   +       +            P  V A+    
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-------PQQVVAIASNG 249

Query: 524 THCRAHGRFEEAEVYCTR 541
              +A    +       +
Sbjct: 250 GGKQALETVQRLLPVLCQ 267

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  100 bits (250), Expect = 1e-22
 Identities = 17/167 (10%), Positives = 41/167 (24%), Gaps = 2/167 (1%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
             +    G         ++ +    +A  L    + A          ++     +    +
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456
           A  + P    A    G   + +      L    ++  L P       +       + L  
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK--QALET 427

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
           ++  +    +A      + +A+        AL             L 
Sbjct: 428 VQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALA 474

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 95.2 bits (237), Expect = 5e-21
 Identities = 20/192 (10%), Positives = 48/192 (25%), Gaps = 9/192 (4%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G   +++  H          L L    + A          ++     +    +A  + P+
Sbjct: 45  GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
              A        + +      L    ++  L P       +       + L  ++  +  
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK--QALETVQALLPV 162

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
             +A      + +A+        AL   +       +            P  V A+    
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-------TPQQVVAIASNG 215

Query: 524 THCRAHGRFEEA 535
              +A    +  
Sbjct: 216 GGKQALETVQRL 227

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 12/101 (11%), Positives = 29/101 (28%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G         ++ +    +A  L    + A          ++     +    +A  + P+
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA 444
              A    G     +   +  L     ++    ND  + +A
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 13/166 (7%), Positives = 36/166 (21%), Gaps = 9/166 (5%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
                       A +     + ++          G    +  +  +        + L P 
Sbjct: 11  SGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPE 70

Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 497
                 +       + L  ++  +    +A      + +A+        AL   +     
Sbjct: 71  QVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 128

Query: 498 YKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
             +            P  V A+       +A    +       +  
Sbjct: 129 LCQAHGLT-------PEQVVAIASHDGGKQALETVQALLPVLCQAH 167

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
                     ++ +    +A  L    + A    G     +++  A +     A+     
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478

Query: 404 DYR-AWYGLG--QAYE 416
           D+  A   LG   A +
Sbjct: 479 DHLVALACLGGRPALD 494

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 98.7 bits (247), Expect = 4e-24
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 2/162 (1%)

Query: 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN 401
             G  ++  G++ ++V+   +    D   +     +G  YV+        +   R++   
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72

Query: 402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 461
           P + +    LG  Y  +     A+    K     P +  +   +      + L   +EAI
Sbjct: 73  PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL--DNLGRFDEAI 130

Query: 462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
             ++ A     +E      +A  +  +GR EEA  ++KK  E
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 30/147 (20%), Positives = 70/147 (47%), Gaps = 2/147 (1%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            +    +G  Y   G  ++      R+L    + +   T++G  YV+++    A+    +
Sbjct: 42  VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456
             + NP ++   + LG A + +     A+  F+ ++ L+PN+ ++  A+A  Y  EQ+  
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY--EQMGR 159

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAK 483
            EEA+  +++A   ++  ++ L  + +
Sbjct: 160 HEEALPHFKKANELDEGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 83.3 bits (207), Expect = 1e-18
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 9/178 (5%)

Query: 364 LKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLY 423
           +  D      +   G  + +      A+    +  D +  D      LG AY        
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 483
                 +S+   P++ ++   +   Y   Q+   + A+    + A  N        +L  
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTY--VQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118

Query: 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
               LGR +EA   +K  L          PN  +    +A      GR EEA  +  +
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  102 bits (256), Expect = 4e-24
 Identities = 36/212 (16%), Positives = 61/212 (28%), Gaps = 20/212 (9%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
            G          ++ + F    +       AW  +G    E +    AI A   A  ++P
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE---------- 452
           +D      L  ++   H    AL   R  +  QP   +L     Q               
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146

Query: 453 ---QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 509
                +   E       A   N ++A     L  L++     + AA   ++ +E      
Sbjct: 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---- 202

Query: 510 REGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
              P+  +    L        R +EA     R
Sbjct: 203 ---PDDAQLWNKLGATLANGNRPQEALDAYNR 231

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 96.2 bits (240), Expect = 5e-22
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 24/220 (10%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            E+   +G   +   +   +++    A  LD   ++    +   +    N  AA+ + R 
Sbjct: 55  EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLY---------------ALHYFRKSVFLQPNDSRL 441
            +   P+  +      QA   +                           ++ + PND++L
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174

Query: 442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 501
             ++   Y     +  + A    RRA      +A   N+L        R +EA   Y + 
Sbjct: 175 HASLGVLYN--LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232

Query: 502 LERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
           L+         P  V  +  +A       +++ A     R
Sbjct: 233 LDIN-------PGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 52/350 (14%), Positives = 99/350 (28%), Gaps = 82/350 (23%)

Query: 183 GIVLKDKGNENLARTVFVESVNSYPWNWNAWS-------ELKSLCTSIDILN-SLNLNNH 234
           G+ +    N   A   F     + P    AW        E +    +I  LN +  L+  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87

Query: 235 WMKDYF-LASAYQELRMHKESLTKYE---------------YLQGTFSFSNYIQAQIAKA 278
            +  +  LA ++        +L                    LQ      +         
Sbjct: 88  DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFF 147

Query: 279 QYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE 338
             +  E+ +   +    L  +P   +D  ++++                           
Sbjct: 148 FAAPNEYRECRTLLHAALEMNP---NDAQLHAS--------------------------- 177

Query: 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398
               +G  Y+L   ++ +    RRA++L  +    W  +G           A+DAY RA+
Sbjct: 178 ----LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233

Query: 399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLE 458
           DINP   R  Y +  +Y  M     A     +++++Q                       
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG-------TTPTGEASREATR 286

Query: 459 EAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508
                +R   N                  + R +     Y +++E    E
Sbjct: 287 SMWDFFRMLLNV-----------------MNRPDLVELTYAQNVEPFAKE 319

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 29/206 (14%), Positives = 47/206 (22%), Gaps = 24/206 (11%)

Query: 351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
           G   ++   +         Y       G   +++ N   A  A+       P    AW  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470
           LG           A+     +  L P D  +  A+A  +     H    A+   R     
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH--TNEHNANAALASLRAWLLS 118

Query: 471 NDSEAIALNQLAKLH---------------HALGRDEEAAFYYKKDLERMEAEEREGPNM 515
                   +   +                  A     E        LE         PN 
Sbjct: 119 QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-------NPND 171

Query: 516 VEALIFLATHCRAHGRFEEAEVYCTR 541
            +    L         ++ A     R
Sbjct: 172 AQLHASLGVLYNLSNNYDSAAANLRR 197

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 96.0 bits (239), Expect = 1e-23
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 360 FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419
                 L ++ L     +G    +      A   ++    ++  D R + GLG   + + 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDSEAIA 477
           +   AL  +     +  N+ R     A+C+   QL  L+ A   +  A           A
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECH--LQLGDLDGAESGFYSARALAAAQPAHEA 124

Query: 478 LNQLAKL 484
           L   A  
Sbjct: 125 LAARAGA 131

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE 452
                  ++       Y LG           A   F+    L   D+R ++ +  C +  
Sbjct: 6   TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-- 63

Query: 453 QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
            L + E+A++ Y   A  + +E       A+ H  LG  + A   +     
Sbjct: 64  SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 79.8 bits (197), Expect = 6e-18
 Identities = 13/106 (12%), Positives = 32/106 (30%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +G      G+ + +   F+    LD      +  +G     +     A+ +Y     ++ 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448
            + R  +   + +  +     A   F  +  L           A+ 
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW 374
           A++ F AL  L       D Y       +G      G +E+++  +     +D N     
Sbjct: 37  AQKIFQALCML-------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89

Query: 375 TLMGHEYVEMKNTPAAIDAYRRAVDINPR--DYRAWYGLGQAY 415
                 ++++ +   A   +  A  +      + A      A 
Sbjct: 90  FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 11/202 (5%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
              Y     + ++      ALK D     AW +    Y  +K    A +++R+A+ I P 
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 404 DYRAWYGLGQA-YEMMHMPLYALHYFRK--SVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460
                   G      ++ P  ++ YF K  +    P      +    C    +      A
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS--AKQGQFGLA 132

Query: 461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520
               +R+         A  +LA+     G+  +A +Y+KK       + R      + L+
Sbjct: 133 EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK------YQSRVEVLQADDLL 186

Query: 521 FLATHCRAHGRFEEAEVYCTRL 542
                 +A G  + A  Y  +L
Sbjct: 187 LGWKIAKALGNAQAAYEYEAQL 208

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 95.8 bits (239), Expect = 1e-22
 Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 10/186 (5%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
             T +  EY+  ++   A  +   A+  +P++  AW    + Y+ + +   A   FR+++
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69

Query: 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDSEAIALNQLAKLHHALGR 490
            ++P+ + +           +L+   E++  + +A       +  IA           G+
Sbjct: 70  SIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128

Query: 491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550
              A  Y K+ L          P    A   LA      G+  +A+ Y  +       + 
Sbjct: 129 FGLAEAYLKRSLAA-------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181

Query: 551 FTHLKN 556
              L  
Sbjct: 182 ADDLLL 187

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 7/179 (3%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHE-YVEMKNTPAAIDAYR 395
             +  +    Y     ++K+   FR+AL +  +        G      +     ++  + 
Sbjct: 42  ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101

Query: 396 RAV--DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
           +A+     P  Y A    G           A  Y ++S+  QP     +  +A+      
Sbjct: 102 KALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM--L 159

Query: 454 LHMLEEAIKCYRRA-ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 511
              L +A   +++  +     +A  L    K+  ALG + +AA+ Y+  L+       E
Sbjct: 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG-NAQAAYEYEAQLQANFPYSEE 217

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 25/186 (13%)

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQY--SLREFEQVEVIFEELLRN 298
           LA  Y   + ++++    E      S      A + +A+    L+  ++ +  F + L  
Sbjct: 14  LAMEYMRGQDYRQATASIE--DALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71

Query: 299 DPYRVDDMDMYSN---VLY--------AKECFS-ALSYLAHRVFMTDKYRPESCCIIGNY 346
            P   D  ++ +N    L         +   F  AL+   +           +    G  
Sbjct: 72  KP---DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP------TPYIANLNKGIC 122

Query: 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406
            + +GQ   +  Y +R+L     +  A+  +    +       A   +++          
Sbjct: 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182

Query: 407 AWYGLG 412
               LG
Sbjct: 183 DDLLLG 188

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  101 bits (252), Expect = 6e-23
 Identities = 45/356 (12%), Positives = 105/356 (29%), Gaps = 57/356 (16%)

Query: 217 KSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY----EYLQGTFSFSNYIQ 272
             +    +  N             LA        ++ +L       E +Q   +    I+
Sbjct: 36  DKVFYRTEFQNR---EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR 92

Query: 273 AQI-----AKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAH 327
           + +     A   Y +     V++  +++            + S  L  +E ++ L     
Sbjct: 93  SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL----- 147

Query: 328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG---HEYVEM 384
                                   Q+E++ V F +AL+         + +    +     
Sbjct: 148 -------------------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188

Query: 385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLY----ALHYFRKSVFLQPNDSR 440
             +  AID  R+A+ +NP +      L      M               +++   P  + 
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248

Query: 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA------------KLHHAL 488
           +  + A+ Y   +    ++AI+  ++A     + A    Q+                + +
Sbjct: 249 VLRSAAKFYR--RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
               +        +  ++  +    N+      LA+      ++EEAE Y  +   
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 93.8 bits (233), Expect = 1e-20
 Identities = 46/404 (11%), Positives = 115/404 (28%), Gaps = 57/404 (14%)

Query: 183 GIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLA 242
             +   KG    A     ++           +E++SL T  +           M      
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDV 113

Query: 243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR 302
             Y  +   K    K+       S     +    + +    + E+ +V FE+ L   P  
Sbjct: 114 QIY--VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

Query: 303 VDDMDMYSNVLYAKECFS----ALSYLAHRVFMTDKYRPESCCIIGNYYS----LKGQHE 354
            +     +   Y  + +     A+  L   + +          ++            +  
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN-QYLKVLLALKLHKMREEGEEEG 230

Query: 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414
           +       AL+               Y        AI+  ++A++  P +      +G  
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290

Query: 415 Y-------------------EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 455
           Y                   +++ +  +A+ + +K+     N  R+   +A  +      
Sbjct: 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH--ALAD 348

Query: 456 MLEEAIKCYRRA----ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE-------- 503
             EEA   +++           + + L       + +  +++A  ++ + ++        
Sbjct: 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408

Query: 504 ---------RMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538
                      +    +     EAL  LA     + + ++A+  
Sbjct: 409 EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 77.7 bits (191), Expect = 2e-15
 Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 45/212 (21%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNT--------- 387
            +       +Y  K + +K++   ++AL+   N       +G  Y               
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 388 ----------PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
                       A+   ++A + N   +R    L   + +      A +YF+K    +  
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 438 DSRLWIAMAQCYETEQLHM--LEEAIKCYRRA------------------------ANCN 471
                +   +    +   M   ++AI  +                            + N
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426

Query: 472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
            +++ AL+ LA L     + ++A    ++ LE
Sbjct: 427 GADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 37/265 (13%), Positives = 78/265 (29%), Gaps = 58/265 (21%)

Query: 228 SLNLNNHWMKDYFLASAYQELRMHKESLTKYE--YLQGTFSFSNYIQA--QIAKAQYSLR 283
            LN +N ++K   LA    ++R   E   + E    +               AK      
Sbjct: 203 RLNPDNQYLK-VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

Query: 284 EFEQVEVIFEELLRNDPYRVDDMDMYSN--VLYAKECFSALSYLAHRVFMTDKYR----- 336
           E ++   + ++ L   P   ++  ++      Y  + F  ++   + ++   K       
Sbjct: 262 EPDKAIELLKKALEYIP---NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318

Query: 337 ---------------PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH-- 379
                             C I+ + ++L  Q+E++  YF++    +   ++   L     
Sbjct: 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378

Query: 380 --EYVEMKNTPAAIDAYRRAVDI------------------------NPRDYRAWYGLGQ 413
             +  +MK    AI  +   V I                        N  D  A + L  
Sbjct: 379 NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438

Query: 414 AYEMMHMPLYALHYFRKSVFLQPND 438
             E+      A     + +      
Sbjct: 439 LQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 28/247 (11%)

Query: 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234
               L       + K   + A  +  +++   P N     ++   C    +   +NL  +
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI-GCCYRAKVFQVMNLREN 304

Query: 235 WMKDYFLASAYQELRMHKESLTKYEY---LQGTFSFSNYIQAQIAKAQYSLREFEQVEVI 291
            M         + L +   ++   +                  +A       ++E+ E  
Sbjct: 305 GMYGK-----RKLLELIGHAVAHLKKADEANDNLFRVCS---ILASLHALADQYEEAEYY 356

Query: 292 FEELLRNDPYRVDDMDMYSN----VLYAKECFS-ALSYLAHRVFMTDKYRPESCCIIGNY 346
           F++    +   V    ++       LY  +C   A+ +          +  E   I    
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH----------FI-EGVKINQKS 405

Query: 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406
              +   +K     +  L  +     A  ++       +    A +   R ++       
Sbjct: 406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465

Query: 407 AWYGLGQ 413
           A    G+
Sbjct: 466 ASSWNGE 472

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  100 bits (251), Expect = 7e-23
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 24/286 (8%)

Query: 236 MKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEEL 295
           M       A   L+  +  + +    + ++  ++ ++    K Q    E E+     EE+
Sbjct: 35  MMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEV 94

Query: 296 LRNDPYRVDDMDMYSNVLYAKECFS--ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH 353
           L +       + +    L     +S  A   L  +    +    E+   +G  Y  KG  
Sbjct: 95  LGSAQVEAQALMLKGKALNVTPDYSPEAEVLL-SKAVKLEPELVEAWNQLGEVYWKKGDV 153

Query: 354 EKSVVYFRRALKLDKNYLS----AWTLM----GHEYVEMKNTPAAIDAYRRAVDINPRDY 405
             +   F  AL   KN +S    +  L            ++   ++   + AV ++  D 
Sbjct: 154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213

Query: 406 RAWYGLGQAYEMMHMPLY--------ALHYFRKSVFLQ---PNDSRLWIAMAQCYETEQL 454
           R+WY LG AY  ++            AL  + ++  +     ++  L +  A  ++    
Sbjct: 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK--YE 271

Query: 455 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500
               EA++ + +AA  + +      +  +L   L R         K
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 72.7 bits (178), Expect = 9e-14
 Identities = 47/320 (14%), Positives = 105/320 (32%), Gaps = 43/320 (13%)

Query: 239 YFLASAYQELRMHKESLTKYEYLQGTF--SFSNYIQA-----QIAKAQYSL--------R 283
           Y    +Y E    +++  K + +Q     +     +        A+A             
Sbjct: 58  YCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPD 117

Query: 284 EFEQVEVIFEELLRNDPYRVDDMDMYSN---VLY-------AKECFS-ALSYLAHRVFMT 332
              + EV+  + ++ +P   + ++ ++    V +       A  CFS AL++  ++V + 
Sbjct: 118 YSPEAEVLLSKAVKLEP---ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ 174

Query: 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV--------EM 384
           +           +          SV   + A+++D     +W ++G+ Y+          
Sbjct: 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP 234

Query: 385 KNTPAAIDAYRRAVDINPR---DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL 441
           K +  A+ AY +A  ++ +   +          ++       AL  F ++  L P     
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

Query: 442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 501
                Q  E   L  L   ++   +         +   + A L        ++A   K  
Sbjct: 295 QQREQQLLE--FLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMT 352

Query: 502 LERMEAEE-REGPNMVEALI 520
           LE       + G N    ++
Sbjct: 353 LELKPLSTLQPGVNSGTVVL 372

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 21/257 (8%), Positives = 67/257 (26%), Gaps = 60/257 (23%)

Query: 179 LYLYGIVLKDKGNENL-ARTVFVESVNSYPWNWNAW-------SELKSLCTSIDILN-SL 229
           L L G  L    + +  A  +  ++V   P    AW        +   + ++    + +L
Sbjct: 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164

Query: 230 NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF-------SNYIQAQIAKA---- 278
               + +    L+   ++L+           +                 ++         
Sbjct: 165 THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL 224

Query: 279 ------QYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332
                   + +  +Q    + +  + D     + D++ N                     
Sbjct: 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN--------------------- 263

Query: 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAID 392
                         +  +  + +++  F +A  LD  +             +    + ++
Sbjct: 264 ----------RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313

Query: 393 AYRRAVDINPRDYRAWY 409
           +  +     P+  ++  
Sbjct: 314 SKGK---TKPKKLQSML 327

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  100 bits (251), Expect = 9e-23
 Identities = 58/382 (15%), Positives = 106/382 (27%), Gaps = 42/382 (10%)

Query: 188 DKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE 247
           ++     A +   E            +EL +           NL +      F      E
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174

Query: 248 LRMH---KESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDP 300
           L      + +    E + G  +          KA  S     R FE+      E  +   
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234

Query: 301 YRVDDMDMYSNVLY-------AKECFS-ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ 352
                ++      +       A E    A+             R  S   +    + +  
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------FPRVNSYIYMALIMADRND 285

Query: 353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412
             +   YF +ALKLD N  S +   G     ++N   A   + +A +++P +   +  L 
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

Query: 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 472
                 +        F ++    P    +    A+       +  ++A+K Y  A    +
Sbjct: 346 CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL--TDKNDFDKALKQYDLAIELEN 403

Query: 473 SEAIALNQLAKL---------HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
                   +A L         +  +    EA    +K  +         P   +A I LA
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-------DPRSEQAKIGLA 456

Query: 524 THCRAHGRFEEAEVYCTRLLDY 545
                    +EA        D 
Sbjct: 457 QMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 95.2 bits (237), Expect = 7e-21
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 16/166 (9%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
                 + + +     F  A +                 +  +   A+  Y  A+++  +
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404

Query: 404 DYRAWYGLGQAYEMMHMPLY---------ALHYFRKSVFLQPNDSRLWIAMAQCYETEQL 454
               + G+        +            A +   K+  L P   +  I +AQ     Q 
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL--QQ 462

Query: 455 HMLEEAIKCYRRAANCNDSE-----AIALNQLAKLHHALGRDEEAA 495
             ++EAI  +  +A+   +      AI   + AK+   +  D   A
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVLA 508

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 33/243 (13%), Positives = 72/243 (29%), Gaps = 53/243 (21%)

Query: 239 YFLASAYQELRMHKESLTKYE---YLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEEL 295
           Y        L+ + ++   ++    L     F      Q+A   Y   +F+  E +F E 
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI---QLACLAYRENKFDDCETLFSEA 364

Query: 296 LRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEK 355
            R  P   +  ++ +                                     + K   +K
Sbjct: 365 KRKFP---EAPEVPNF-------------------------------FAEILTDKNDFDK 390

Query: 356 SVVYFRRALKLDKNYLSAWTLMGHEYVE---------MKNTPAAIDAYRRAVDINPRDYR 406
           ++  +  A++L+      +  +     +         ++N   A +   +A  ++PR  +
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
           A  GL Q          A+  F +S  L         A+           +++ I+    
Sbjct: 451 AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE----AAKVQQRIRSDPV 506

Query: 467 AAN 469
            A 
Sbjct: 507 LAK 509

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 26/207 (12%), Positives = 70/207 (33%), Gaps = 10/207 (4%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN +    +++ ++ Y+  AL+L ++    ++ +   YV + +    ++   +A+++ P 
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRK-SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
             +       A E +     A+      S+    ND+ +   + +    + +  L+E   
Sbjct: 72  YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131

Query: 463 CYRRAANCNDSEAIALNQLAKLHHALGRDEE------AAFYYKKDLERMEAEEREGPNMV 516
               A       +    +  K                  F  +      +        ++
Sbjct: 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM 191

Query: 517 EALIFLATHCRAHGRFEEAEVYCTRLL 543
             L  L    R+   +++A+   T+  
Sbjct: 192 NGLSNLYK--RSPESYDKADESFTKAA 216

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY 427
             Y  A    G+++   K    AI  Y  A+++   D   +  L   Y  +      +  
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEM 61

Query: 428 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA---NCNDSEAIALNQLAKL 484
             K++ L+P+ S++ +  A     E L    +A+      +   + ND+    + +    
Sbjct: 62  STKALELKPDYSKVLLRRASAN--EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

Query: 485 HHALGRDEEAAFYYKKDLER 504
             A+ + +E           
Sbjct: 120 KQAMSKLKEKFGDIDTATAT 139

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 19/221 (8%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA---VD 399
           +   Y   G  +K V    +AL+L  +Y             +     A+          D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE------- 452
            N              + M            +       S       +  +         
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164

Query: 453 ----QLHMLEEAIKCYRRAANCNDSEAIALNQLAKL-----HHALGRDEEAAFYYKKDLE 503
                +   E     Y  +   +      L+ L K        A     +AA  +++ L+
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224

Query: 504 RMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
           +   +E+    +  +L               A     + ++
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  100 bits (251), Expect = 1e-22
 Identities = 35/300 (11%), Positives = 77/300 (25%), Gaps = 42/300 (14%)

Query: 270 YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY-------AKECFS-A 321
                      S   +  +                 +       +       A+     +
Sbjct: 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269

Query: 322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEY 381
           ++             P S   +    + K   ++   +F++A+ L+  Y   +   G  Y
Sbjct: 270 INL---------HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320

Query: 382 VEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL 441
             +++   A + +++A  +NP +   +  L            +  +F ++    P    +
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

Query: 442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL----------------H 485
               A+          + AIK Y  A    + +      +  L                 
Sbjct: 381 PTFFAEIL--TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438

Query: 486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545
               +   A     K  E         P   +A I LA       + +EA          
Sbjct: 439 LDEEKFNAAIKLLTKACELD-------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 23/186 (12%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +      +G+  +S  +F              T       +  +   AI  Y  A  +  
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 403 RDYRAWYGLGQAYEMMHMPLY----------------ALHYFRKSVFLQPNDSRLWIAMA 446
              +   G+G       +                   A+    K+  L P   +  I +A
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469

Query: 447 QCYETEQLHMLEEAIKCYRRAANCNDSEA-----IALNQLAKLHHALGRDEEAAFYYKKD 501
           Q     Q+  ++EAI+ +  +A    +           + AK+   L  D   +   +  
Sbjct: 470 QLKL--QMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELT 527

Query: 502 LERMEA 507
           L R  A
Sbjct: 528 LARYRA 533

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 39/241 (16%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
            GN++       +++ Y++ A++LD N    ++ +   Y+   +    I+   +A++I P
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ--------- 453
              +A      A E +     A+            D      M +    +Q         
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 454 -------------LHMLEEAIKCYRRA--------------ANCNDSEAIAL---NQLAK 483
                           L      +                 A    S+A+          
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210

Query: 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
              A     ++   Y   L     ++    N   AL +            +A+V     +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 544 D 544
           +
Sbjct: 271 N 271

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 351 GQHEKSVVYFRRALKLDKN----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406
           G H        +   L  +    Y       G+ +   KN   AI  Y+ A++++P +  
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
            +  +   Y         + +  K++ ++P+ S+  +  A     E L    +A+     
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN--ESLGNFTDAMFDLSV 118

Query: 467 AANCNDSEAIALNQLAKL---HHALGRDEEAAFYYKKDLER 504
            +   D +  ++  + +      A+    E     +    +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 35/264 (13%), Positives = 82/264 (31%), Gaps = 30/264 (11%)

Query: 179 LYLYGIVLKDKGNENLARTVFVESVNSYP----WNW--NAWSELKSLCTSIDILN-SLNL 231
           L   GI    K N   A+ +  ES+N +P    + +     ++ ++          +++L
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305

Query: 232 NNHWMKDYF-LASAYQELRMHKESLTKYEY---LQGTFSFSNYIQAQIAKAQYSLREFEQ 287
           N  +   Y+     Y  L+ +K +   ++    L     +      Q+A   Y   +F +
Sbjct: 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI---QLACLLYKQGKFTE 362

Query: 288 VEVIFEELLRNDPYRVDDMDMYSNVLY-------AKECFS---------ALSYLAHRVFM 331
            E  F E     P   +    ++ +L        A + +             ++     +
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422

Query: 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI 391
                             + +   ++    +A +LD     A   +    ++M+    AI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

Query: 392 DAYRRAVDINPRDYRAWYGLGQAY 415
           + +  +  +             A 
Sbjct: 483 ELFEDSAILARTMDEKLQATTFAE 506

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 22/214 (10%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
            G     +G    +V+ F  A++ D  ++ AW  +G    E +    AI A RR +++ P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-------- 454
            +  A   L  ++    +   A    R  +   P  + L     +      L        
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189

Query: 455 -----HMLEEAIKCYRRAA--NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507
                 +  E  + +  A   +    +      L  L +  G  ++A   +   L     
Sbjct: 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-- 247

Query: 508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
                PN       L        + EEA     R
Sbjct: 248 -----PNDYLLWNKLGATLANGNQSEEAVAAYRR 276

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 26/222 (11%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            E+   +G   +   Q   ++   RR L+L  +  +A   +   +        A +  R 
Sbjct: 98  MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157

Query: 397 AVDINPRDYRAW---------YGLGQAYEMMHMPLY------ALHYFRKSVFLQPN--DS 439
            +   P                GLG +  ++   L           F  +V L P   D 
Sbjct: 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217

Query: 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
            +   +   +        ++A+ C+  A +   ++ +  N+L        + EEA   Y+
Sbjct: 218 DVQCGLGVLFN--LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275

Query: 500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
           + LE         P  + +   L   C   G   EA  +   
Sbjct: 276 RALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLE 310

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 15/173 (8%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL--MGHEYVEMKNTPAAIDAYRRAVDIN 401
                      +    F  A++LD   +       +G  +        A+D +  A+ + 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

Query: 402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 461
           P DY  W  LG      +    A+  +R+++ LQP   R    +        L    EA+
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI--NLGAHREAV 305

Query: 462 KCYRRAANCNDSEAIALNQLAKLHH-----------ALGRDEEAAFYYKKDLE 503
           + +  A N          +   +              LG+ +       +DL 
Sbjct: 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 56/318 (17%), Positives = 102/318 (32%), Gaps = 39/318 (12%)

Query: 170 KNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWS-------ELKSLCTS 222
           +N   D    +  G+    +G+   A  +F  +V   P +  AW        E +    +
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117

Query: 223 IDILN---SLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQ 279
           I  L     L  +N       LA ++    + +++                         
Sbjct: 118 ISALRRCLELKPDNQTAL-MALAVSFTNESLQRQACEILR------------DWLRYTPA 164

Query: 280 YSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS-ALSYLAHRVFMTDKYRPE 338
           Y+       E      L      +  +   S  L  KE F  A+              P+
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP------TSIDPD 218

Query: 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398
             C +G  ++L G+++K+V  F  AL +  N    W  +G        +  A+ AYRRA+
Sbjct: 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278

Query: 399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET------- 451
           ++ P   R+ Y LG +   +     A+ +F +++ +Q              E        
Sbjct: 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338

Query: 452 --EQLHMLEEAIKCYRRA 467
               L   +       R 
Sbjct: 339 ALSMLGQSDAYGAADARD 356

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.2 bits (193), Expect = 8e-16
 Identities = 30/202 (14%), Positives = 68/202 (33%), Gaps = 16/202 (7%)

Query: 349 LKGQHEKSVVYFRRALKLDKN----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404
           L    + +   + +  + ++             G   ++  + P A+  +  AV  +P+ 
Sbjct: 38  LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH 97

Query: 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY 464
             AW  LG         L A+   R+ + L+P++    +A+A  +      +  +A +  
Sbjct: 98  MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF--TNESLQRQACEIL 155

Query: 465 RRA--ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE------REGPNMV 516
           R         +  +   +       LG  +        D   +E +E      R  P  +
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215

Query: 517 EALIF--LATHCRAHGRFEEAE 536
           +  +   L       G +++A 
Sbjct: 216 DPDVQCGLGVLFNLSGEYDKAV 237

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 9/212 (4%)

Query: 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
           +TD  R +     G  Y   G    +   F +AL +  +    +  +G    +  N  AA
Sbjct: 37  LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96

Query: 391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY- 449
            +A+   ++++P    A    G A         A           PND    + +     
Sbjct: 97  YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156

Query: 450 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 509
           + ++    E   + + ++        I    L  +       E        +        
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI-SEQTLMERLKADATDNTSLA---- 211

Query: 510 REGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
               ++ E   +L  +  + G  + A      
Sbjct: 212 ---EHLSETNFYLGKYYLSLGDLDSATALFKL 240

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 24/204 (11%), Positives = 47/204 (23%), Gaps = 11/204 (5%)

Query: 342 IIGNYYSLKGQHEKSVVYFRRALK----LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           ++        Q E  +    + L      D          G  Y  +     A + + +A
Sbjct: 10  VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 69

Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457
           + I P     +  LG           A   F   + L P  +   +              
Sbjct: 70  LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL--YYGGRD 127

Query: 458 EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE 517
           + A          + ++      L      L   +      +      E  ++E      
Sbjct: 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ----HFEKSDKEQWGWNI 183

Query: 518 ALIFLATHCRAHGRFEEAEVYCTR 541
              +L          E  +   T 
Sbjct: 184 VEFYLGN-ISEQTLMERLKADATD 206

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 42/287 (14%), Positives = 75/287 (26%), Gaps = 32/287 (11%)

Query: 232 NNHWMKDYFLASAYQELRMHKESLTKYE--YLQGTFSFSNYIQA--QIAKAQYSLREFEQ 287
           N  W K   LA   Q     +  L + E        +     Q   +      SL     
Sbjct: 2   NTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL 61

Query: 288 VEVIFEELLRNDPYRVDDMDMYSN---VLY-------AKECF-SALSYLAHRVFMTDKYR 336
               F + L   P   D  ++++     L        A E F S L          D   
Sbjct: 62  ARNDFSQALAIRP---DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTY 110

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAID---A 393
             +    G      G+ + +        + D N       +     ++    A       
Sbjct: 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170

Query: 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
           + ++           + LG   E   M          +  L  + S     + + Y    
Sbjct: 171 FEKSDKEQWGWNIVEFYLGNISEQTLMER-LKADATDNTSLAEHLSETNFYLGKYYL--S 227

Query: 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500
           L  L+ A   ++ A   N    +           LG+D++      +
Sbjct: 228 LGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 21/217 (9%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            E+   +G   +     + ++V  +R L+L  N L A   +   Y    +   A +A + 
Sbjct: 99  AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALH----------YFRKSVFLQPN--DSRLWIA 444
            +  NP+          +  +      +             + ++     +  D  L   
Sbjct: 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218

Query: 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504
           +   +          AI  +  A      +    N+L        R EEA   Y + LE 
Sbjct: 219 LGVLF--HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276

Query: 505 MEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
                   P  + +   L   C   G + EA      
Sbjct: 277 Q-------PGFIRSRYNLGISCINLGAYREAVSNFLT 306

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 93.2 bits (232), Expect = 8e-21
 Identities = 41/209 (19%), Positives = 63/209 (30%), Gaps = 17/209 (8%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
            G     +G    ++++   A+  D     AW  +G    E +N  AAI A +R +++ P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET--------EQL 454
            + +A   L  +Y        A    +  +   P    L                     
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 455 HMLEEAIKCYRRAA--NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512
            +LE   + Y  AA  N +  +      L  L H  G    A   +   L          
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR------- 243

Query: 513 PNMVEALIFLATHCRAHGRFEEAEVYCTR 541
           P        L        R EEA    TR
Sbjct: 244 PEDYSLWNRLGATLANGDRSEEAVEAYTR 272

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 7/198 (3%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
                 +     S   +    +            G + ++  + P  I     A+  +P 
Sbjct: 38  NQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG 97

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
           D  AW  LG           A+   ++ + LQPN+ +  +A+A  Y        ++A + 
Sbjct: 98  DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY--TNTSHQQDACEA 155

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE---REGPNMVEALI 520
            +     N      +           R  ++           E       +  +M++  +
Sbjct: 156 LKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215

Query: 521 F--LATHCRAHGRFEEAE 536
              L       G F  A 
Sbjct: 216 QTGLGVLFHLSGEFNRAI 233

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 51/316 (16%)

Query: 170 KNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAW-------SELKSLCTS 222
           +N   D  G +  G+    +G+  +       ++   P +  AW       +E ++   +
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118

Query: 223 IDILN-SLNLNNHWMKDYF-LASAYQELRMHKESLTKYE--------YLQGTFSFSN--Y 270
           I  L   L L  + +K    LA +Y      +++    +        Y     +      
Sbjct: 119 IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178

Query: 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF 330
           +  +++K+       E V+ ++ E    +   +D  D+ +                    
Sbjct: 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP-DLQTG------------------- 218

Query: 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
                       +G  + L G+  +++  F  AL +     S W  +G        +  A
Sbjct: 219 ------------LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

Query: 391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
           ++AY RA++I P   R+ Y LG +   +     A+  F  ++ LQ               
Sbjct: 267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS 326

Query: 451 TEQLHMLEEAIKCYRR 466
                 L  A+    +
Sbjct: 327 GNIWAALRIALSLMDQ 342

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 24/202 (11%), Positives = 54/202 (26%), Gaps = 17/202 (8%)

Query: 351 GQHEKSVVYFRRALKLDKNYLSAWTLMG--------HEYVEMKNTPAAIDAYRRAVDINP 402
            + E++        +      + W  M          E        A+   Y    +   
Sbjct: 3   MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
           +D+   +  G            + +   ++   P D+  W  +       +    + AI 
Sbjct: 63  KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQ--AENENEQAAIV 120

Query: 463 CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 522
             +R      +   AL  LA  +      ++A    K  +++        P     +   
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-------NPKYKYLVKNK 173

Query: 523 ATHCRAHGRFEEAEVYCTRLLD 544
                   R  ++ V  + L  
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEG 195

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)

Query: 351 GQHEKSVVYFRRALKLDKNYLSA--WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW 408
              E     +  A   + + +     T +G  +        AIDA+  A+ + P DY  W
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW 250

Query: 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA- 467
             LG           A+  + +++ +QP   R    +        L    EA+  +  A 
Sbjct: 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI--NLGAYREAVSNFLTAL 308

Query: 468 --------ANCNDSEAIALNQLAKLHHAL---GRDEEAAFYYKKDLERMEAE 508
                          AI+ N  A L  AL    + E        DL+ +   
Sbjct: 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRA 360

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 97.1 bits (242), Expect = 9e-22
 Identities = 48/345 (13%), Positives = 104/345 (30%), Gaps = 63/345 (18%)

Query: 183 GIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLA 242
           G +L  +G  + A   F + + S P           L  S ++    +           A
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ----------A 150

Query: 243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR 302
                   +  ++   + +     +   ++   A+      E  +     +   +     
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-- 208

Query: 303 VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362
            D+ + +                                 I   Y   G HE S+   R 
Sbjct: 209 -DNTEAFYK-------------------------------ISTLYYQLGDHELSLSEVRE 236

Query: 363 ALKLDKNYLSAWTLM------------GHEYVEMKNTPAAIDAYRRAVDINPRD----YR 406
            LKLD+++   +                 E +       A   Y   +   P       R
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
           +   +   +     P+ A+    + + ++P++       A+ Y      M +EAI+ Y  
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL--IEEMYDEAIQDYET 354

Query: 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 511
           A   N+++      L K    L + ++  +Y    ++R  A+++E
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR-NAKKQE 398

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 94.8 bits (236), Expect = 6e-21
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 20/212 (9%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
            E    +G      GQ   ++  F  A+  D +   A+      ++ M  + AA+    +
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456
            + +      A    G           A   F+K +   P+++    A +Q  +++++  
Sbjct: 86  VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145

Query: 457 L-------------EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
           L               AI    +       +A      A+     G   +A    K   +
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205

Query: 504 RMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
                     +  EA   ++T     G  E +
Sbjct: 206 LK-------NDNTEAFYKISTLYYQLGDHELS 230

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 45/337 (13%), Positives = 109/337 (32%), Gaps = 52/337 (15%)

Query: 239 YFLASAYQELRMHKESLTKYEY---LQGTFSFSNYIQA--QIAKAQYSLREFEQVEVIFE 293
           Y  A+ +  +   K +L        L+      ++  A  Q         + ++ E  F+
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLK-----MDFTAARLQRGHLLLKQGKLDEAEDDFK 118

Query: 294 ELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR----------------P 337
           ++L+++P   ++ +  S ++ + E     S  A   F +  Y                  
Sbjct: 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRS-QALNAFGSGDYTAAIAFLDKILEVCVWDA 177

Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E   +    +  +G+  K++   + A KL  +   A+  +   Y ++ +   ++   R  
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237

Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLY------------ALHYFRKSVFLQPNDSRLWIA- 444
           + ++    R +    Q  ++  +               A   +   +  +P+ +   +  
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297

Query: 445 ---MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 501
              +  C+   +     EAI+              AL   A+ +      +EA   Y+  
Sbjct: 298 KERICHCF--SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355

Query: 502 LERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538
            E          N  +    L    R   + ++ + Y
Sbjct: 356 QE-------HNENDQQIREGLEKAQRLLKQSQKRDYY 385

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.0 bits (203), Expect = 9e-17
 Identities = 40/336 (11%), Positives = 96/336 (28%), Gaps = 51/336 (15%)

Query: 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
           +          ++ +S+   E              ++ K   +  +       F   +  
Sbjct: 7   HSSGVDLGTENLYFQSMADVEKHL-----------ELGKKLLAAGQLADALSQFHAAVDG 55

Query: 299 DPYRVDDMDMYSN---VLYAKECFS-ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE 354
           DP   D+   Y     V  A      AL  L   + +   +   +    G+    +G+ +
Sbjct: 56  DP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-TAARLQRGHLLLKQGKLD 111

Query: 355 KSVVYFRRALKLDKNYLSAWTLM---------------GHEYVEMKNTPAAIDAYRRAVD 399
           ++   F++ LK + +                               +  AAI    + ++
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171

Query: 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 459
           +   D        + +     P  A+   + +  L+ +++  +  ++  Y   QL   E 
Sbjct: 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY--QLGDHEL 229

Query: 460 AIKCYRRAANCNDSEAIALNQLAKL------------HHALGRDEEAAFYYKKDLERMEA 507
           ++   R     +           ++                GR  +A   Y+  ++    
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---T 286

Query: 508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
           E       V +   +        +  EA   C+ +L
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 36/193 (18%)

Query: 359 YFRRALKLDK--------NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
           +    + L            +     +G + +       A+  +  AVD +P +Y A+Y 
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65

Query: 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470
               +  M     AL    K + L+ + +   +         +   L+EA   +++    
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL--KQGKLDEAEDDFKKVLKS 123

Query: 471 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530
           N SE       ++L  +    +E      +                      A +    G
Sbjct: 124 NPSENEEKEAQSQLIKS----DEMQRLRSQ----------------------ALNAFGSG 157

Query: 531 RFEEAEVYCTRLL 543
            +  A  +  ++L
Sbjct: 158 DYTAAIAFLDKIL 170

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY 464
           +   +  G      ++   ++    K            + + +         L +A+  +
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLL--AAGQLADALSQF 49

Query: 465 RRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT 524
             A + +    IA  + A +  A+G+ + A     K ++          +   A +    
Sbjct: 50  HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------KMDFTAARLQRGH 102

Query: 525 HCRAHGRFEEAEVYCTRLL 543
                G+ +EAE    ++L
Sbjct: 103 LLLKQGKLDEAEDDFKKVL 121

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 93.4 bits (233), Expect = 1e-21
 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 10/198 (5%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
                 KG++E ++     A++  +   + + ++   +  + N    +   ++ ++    
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ- 103

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
                +        +      L       ++ P  +       + Y          A+K 
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY--FTKSDWPNAVKA 161

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
           Y         +A   +  A     L    EA     K +E+        PN V A I  A
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRAYIRKA 214

Query: 524 THCRAHGRFEEAEVYCTR 541
           T   A   +  A      
Sbjct: 215 TAQIAVKEYASALETLDA 232

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 93.0 bits (232), Expect = 2e-21
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 4/144 (2%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
            +  +     EK +        ++        L G EY    + P A+ AY   +   P 
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
           D R +     A   +     A+    K++   PN  R +I  A       +     A++ 
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ--IAVKEYASALET 229

Query: 464 YRRAA--NCNDSEAIALNQLAKLH 485
              A   +   +   +  ++ +L+
Sbjct: 230 LDAARTKDAEVNNGSSAREIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 93.0 bits (232), Expect = 2e-21
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 11/198 (5%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN +    Q ++++ ++ +A +L K+  +          E      AI     AV+    
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
               +  + +++  +    + L   +K++             A      +L   E+ +K 
Sbjct: 71  MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADIL--TKLRNAEKELKK 127

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
               A  N  +A       K +        A   Y + ++R        P         A
Sbjct: 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PEDARGYSNRA 180

Query: 524 THCRAHGRFEEAEVYCTR 541
                   F EA   C +
Sbjct: 181 AALAKLMSFPEAIADCNK 198

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 88.8 bits (221), Expect = 5e-20
 Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 3/161 (1%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           I   ++  G     +   ++ ++  +  L+          +++N    +        +NP
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNAEKELKKAEAEAYVNP 136

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
                    G+ Y        A+  + + +   P D+R +   A      +L    EAI 
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA--KLMSFPEAIA 194

Query: 463 CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
              +A   + +   A  + A    A+     A         
Sbjct: 195 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 74.5 bits (184), Expect = 4e-15
 Identities = 16/173 (9%), Positives = 49/173 (28%), Gaps = 11/173 (6%)

Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
           +        G+++ + +    AI+ Y +A +++  D         A         A+   
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTL 61

Query: 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488
             +V         +  +++ +   ++      +   ++       +++  ++ A +   L
Sbjct: 62  NDAVEQGREMRADYKVISKSF--ARIGNAYHKLGDLKKTIEYYQ-KSLTEHRTADILTKL 118

Query: 489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
              E+     + +           P   E              +  A    T 
Sbjct: 119 RNAEKELKKAEAEAYV-------NPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 90.0 bits (223), Expect = 2e-21
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 2/129 (1%)

Query: 360 FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419
                ++  + L     +     +      A   ++    ++  D R + GLG   + M 
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69

Query: 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALN 479
               A+H +     +   + R     A+C    Q   L EA      A     +      
Sbjct: 70  QYDLAIHSYSYGAVMDIXEPRFPFHAAECL--LQXGELAEAESGLFLAQELIANXPEFXE 127

Query: 480 QLAKLHHAL 488
              ++   L
Sbjct: 128 LSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 21/136 (15%), Positives = 34/136 (25%), Gaps = 2/136 (1%)

Query: 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448
           +         +I+       Y L            A   F+    L   DSR ++ +  C
Sbjct: 5   SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64

Query: 449 YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508
            +   +   + AI  Y   A  +  E       A+     G   EA        E +   
Sbjct: 65  RQ--AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122

Query: 509 EREGPNMVEALIFLAT 524
                        L  
Sbjct: 123 PEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 6/127 (4%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +       G +E +   F+    LD      +  +G     M     AI +Y     ++ 
Sbjct: 27  LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
            + R  +   +          A      +  L  N         +         + EAIK
Sbjct: 87  XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS------SMLEAIK 140

Query: 463 CYRRAAN 469
             +   +
Sbjct: 141 LKKEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 11/135 (8%), Positives = 32/135 (23%)

Query: 284 EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCII 343
                      L       ++ +   +   Y    +     +   + + D Y       +
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G      GQ++ ++  +     +D              ++      A      A ++   
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 404 DYRAWYGLGQAYEMM 418
                    +   M+
Sbjct: 122 XPEFXELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 7/85 (8%)

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 516
           L             +      L  LA   +  G  E+A   ++                 
Sbjct: 3   LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDS 55

Query: 517 EALIFLATHCRAHGRFEEAEVYCTR 541
              + L    +A G+++ A    + 
Sbjct: 56  RFFLGLGACRQAMGQYDLAIHSYSY 80

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 93.9 bits (233), Expect = 3e-20
 Identities = 37/374 (9%), Positives = 95/374 (25%), Gaps = 27/374 (7%)

Query: 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSE----LKSLCTSIDILNSLN 230
               +  +    +          V  ++    P    A +      ++L T   +L  L 
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 386

Query: 231 ----LNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQA--QIAKAQYSLRE 284
               L    +         Q L   +  L      Q      + + A       + +L  
Sbjct: 387 QAHGLTPDQVVAIASNGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASHDGGKQALET 444

Query: 285 FEQVEVIFEELLRNDPYRVDDMDMYSN---VLYAKECFSALSYLAHRVFMTDKYRPESCC 341
            +++  +  +     P     +   ++      A E    L  +  +       +  +  
Sbjct: 445 VQRLLPVLCQTHGLTP---AQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIA 501

Query: 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN 401
                       ++ +    +A  L  + + A    G     ++     +    +A  + 
Sbjct: 502 SNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 561

Query: 402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 461
           P    A    G   + +      L    ++  L         +       + L  ++  +
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGK--QALETVQRLL 619

Query: 462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 521
               +A     ++ +A+        AL   +       +            P+ V A+  
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL-------TPDQVVAIAS 672

Query: 522 LATHCRAHGRFEEA 535
                +A    +  
Sbjct: 673 NGGGKQALETVQRL 686

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 93.6 bits (232), Expect = 5e-20
 Identities = 20/192 (10%), Positives = 50/192 (26%), Gaps = 10/192 (5%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G         ++ +    +A  L  + + A          ++     +    +A  + P 
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
              A    G   + +      L    ++  L P+      +       E    ++  +  
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALET---VQRLLPV 417

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
             +A      + +A+        AL   +       +            P  V A+    
Sbjct: 418 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHG-------LTPAQVVAIASHD 470

Query: 524 THCRAHGRFEEA 535
              +A    ++ 
Sbjct: 471 GGKQALETVQQL 482

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 89.3 bits (221), Expect = 9e-19
 Identities = 32/306 (10%), Positives = 78/306 (25%), Gaps = 14/306 (4%)

Query: 243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY- 301
           S  Q+ ++  +  +             +  A I            V V ++ ++   P  
Sbjct: 59  SQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEA 118

Query: 302 -RVDDMDMYSNVLYAKECFSALSY---LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSV 357
              D + +      A+   + L+    L       D  +       G   +++  H    
Sbjct: 119 THEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRN 178

Query: 358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417
                 L L    + A          ++     +    +A  + P    A        + 
Sbjct: 179 ALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 238

Query: 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 477
           +      L    ++  L P+      +       + L  ++  +    +A      + +A
Sbjct: 239 LETMQRLLPVLCQAHGLPPDQVVAIASNIGGK--QALETVQRLLPVLCQAHGLTPDQVVA 296

Query: 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV 537
           +        AL   +       +            P+ V A+       +A    +    
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGL-------TPDQVVAIASHDGGKQALETVQRLLP 349

Query: 538 YCTRLL 543
              +  
Sbjct: 350 VLCQAH 355

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 89.3 bits (221), Expect = 1e-18
 Identities = 19/200 (9%), Positives = 51/200 (25%), Gaps = 10/200 (5%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
                     ++ +    +A  L  + + A    G     ++     +    +A  + P 
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
              A        + +      L    ++  L P+      +     +   L  ++  +  
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ--ALETVQRLLPV 384

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
             +A      + +A+        AL   +       +            P+ V A+    
Sbjct: 385 LCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLT-------PDQVVAIASHD 436

Query: 524 THCRAHGRFEEAEVYCTRLL 543
              +A    +       +  
Sbjct: 437 GGKQALETVQRLLPVLCQTH 456

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 83.5 bits (206), Expect = 6e-17
 Identities = 33/370 (8%), Positives = 89/370 (24%), Gaps = 26/370 (7%)

Query: 179 LYLYGIVLKDKGNENLARTVFVE-------SVNSYPWNWNAWSELKSLCTSIDILN---S 228
           +  +    +          V  +        V +   N      L ++   + +L     
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525

Query: 229 LNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQV 288
           L  +             Q L   +  L       G         A     + +L   +++
Sbjct: 526 LTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 584

Query: 289 EVIFEELLRNDPYRVDDMDMYSN---VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGN 345
             +  +           +   ++      A E    L  +  +       +  +      
Sbjct: 585 LPVLCQAHGLTQ---VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 641

Query: 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY 405
                   ++ +    +A  L  + + A    G     ++     +    +A  +     
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQV 701

Query: 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 465
            A        + +      L    ++  L P+      +       + L  ++  +    
Sbjct: 702 VAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK--QALETVQRLLPVLC 759

Query: 466 RAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 525
           +A     ++ +A+        AL   +       +D              V A+      
Sbjct: 760 QAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGL-------TLAQVVAIASNIGG 812

Query: 526 CRAHGRFEEA 535
            +A    +  
Sbjct: 813 KQALETVQRL 822

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 15/159 (9%), Positives = 38/159 (23%), Gaps = 9/159 (5%)

Query: 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447
             A +     + ++          G    M  +           + L P       +   
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200

Query: 448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507
             +   L  ++  +    +A     ++ +A+        AL   +       +       
Sbjct: 201 GKQ--ALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGL--- 255

Query: 508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546
                P+ V A+       +A    +       +    T
Sbjct: 256 ----PPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 290

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 19/185 (10%), Positives = 46/185 (24%), Gaps = 10/185 (5%)

Query: 351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
              ++ +    +   L    + A          ++     +    +A  +      A   
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842

Query: 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470
                + +      L    +   L P+      +     +  +       + C       
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902

Query: 471 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530
           +   AIA N   +   AL   +       +D           P+ V A+   +   +A  
Sbjct: 903 DQVVAIASNGGKQ---ALETVQRLLPVLCQDHGL-------TPDQVVAIASNSGGKQALE 952

Query: 531 RFEEA 535
             +  
Sbjct: 953 TVQRL 957

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 85.6 bits (212), Expect = 7e-20
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 2/125 (1%)

Query: 360 FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419
            +    +  + +       +++        A   +R     +  +     GL   Y++  
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALN 479
               A   +  +  L  ND        QC    +L    +A +C+      ++ E + + 
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQCQ--LRLKAPLKAKECFELVIQHSNDEKLKIK 142

Query: 480 QLAKL 484
             + L
Sbjct: 143 AQSYL 147

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 2/112 (1%)

Query: 393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE 452
             +    I        Y     +        A  +FR        +    + +A  Y+  
Sbjct: 24  TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-- 81

Query: 453 QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504
                ++A   Y  A     ++   +    +    L    +A   ++  ++ 
Sbjct: 82  IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 75.6 bits (186), Expect = 2e-16
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 2/107 (1%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
               +  KG+ E++ V+FR     D   +     +   Y   +    A D Y  A  +  
Sbjct: 42  YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449
            DY   +  GQ    +  PL A   F   +    ++       AQ Y
Sbjct: 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK--LKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 20/145 (13%), Positives = 49/145 (33%), Gaps = 4/145 (2%)

Query: 272 QAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS-ALSYLAHRVF 330
             +      ++ +        +++       +DD+  Y+   Y K     A  +    + 
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFF-RFLC 63

Query: 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
           + D Y  +    +   Y +K Q +++   +  A  L KN  +     G   + +K    A
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123

Query: 391 IDAYRRAVDINPRDYRAWYGLGQAY 415
            + +   +  +  +        Q+Y
Sbjct: 124 KECFELVIQHSNDE--KLKIKAQSY 146

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 80.9 bits (201), Expect = 2e-18
 Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E+   +GN Y  +G +++++ Y+++AL+LD     AW  +G+ Y +  +   AI+ Y++A
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457
           ++++PR   AWY LG AY        A+ Y++K++ L P  +  W  +   Y   +    
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY--YKQGDY 119

Query: 458 EEAIKCYRRA 467
           +EAI+ Y++A
Sbjct: 120 DEAIEYYQKA 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 43/169 (25%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
           AW  +G+ Y +  +   AI+ Y++A++++PR   AWY LG AY                 
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY---------------- 46

Query: 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 492
                               +    +EAI+ Y++A   +   A A   L   ++  G  +
Sbjct: 47  --------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86

Query: 493 EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
           EA  YY+K LE         P   EA   L       G ++EA  Y  +
Sbjct: 87  EAIEYYQKALEL-------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 18/60 (30%), Positives = 40/60 (66%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +GN Y  +G +++++ Y+++AL+LD     AW  +G+ Y +  +   AI+ Y++A++++P
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 80.7 bits (199), Expect = 6e-18
 Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 8/158 (5%)

Query: 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406
           ++ +   E  +   +  ++ +      W L+G  Y+   +   ++ AYR+A+ +   +  
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 407 AWYGLGQAYEMM---HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
            +  L          HM         K++ L  N+    + +A            +AI+ 
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA--FMQANYAQAIEL 137

Query: 464 YRRAANC---NDSEAIALNQLAKLHHALGRDEEAAFYY 498
           +++  +      +    +  +        R +    ++
Sbjct: 138 WQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHH 175

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
           H++   +N  A + A +  +  NP++   W  LG+ Y   +    +L  +R+++ L+  +
Sbjct: 18  HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77

Query: 439 SRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 497
           + L+ A+A   Y     HM  +      +A   + +E  AL  LA          +A   
Sbjct: 78  AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL 137

Query: 498 YKKDLERMEAE 508
           ++K ++     
Sbjct: 138 WQKVMDLNSPR 148

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 63.0 bits (153), Expect = 9e-12
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN---TPAAIDAYRRAVDI 400
           G YY  +  +  S++ +R+AL+L       +  +        +   T        +A+ +
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
           +  +  A   L     M      A+  ++K + L     
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 19/95 (20%), Positives = 32/95 (33%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
            G          ++ + F    + +     AW  +G    E +    AI A   A  ++P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
           +D      L  ++   H    AL   R  +  QP 
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 2/100 (2%)

Query: 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431
                 G   +++ N   A  A+       P    AW  LG           A+     +
Sbjct: 18  ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

Query: 432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471
             L P D  +  A+A  +     H    A+   R      
Sbjct: 78  RMLDPKDIAVHAALAVSH--TNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 12/87 (13%), Positives = 15/87 (17%), Gaps = 7/87 (8%)

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 516
           L EA   +            A   L        +D  A                  P  +
Sbjct: 33  LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKDI 85

Query: 517 EALIFLATHCRAHGRFEEAEVYCTRLL 543
                LA           A       L
Sbjct: 86  AVHAALAVSHTNEHNANAALASLRAWL 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 2e-15
 Identities = 79/570 (13%), Positives = 160/570 (28%), Gaps = 197/570 (34%)

Query: 81  PVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEE 140
            V E+  V++          FDC++       ++D    +S+             ++E +
Sbjct: 23  SVFEDAFVDN----------FDCKD-------VQDMP--KSIL-----------SKEEID 52

Query: 141 MIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFV 200
            I     +   +AV+                              L  K  E + +  FV
Sbjct: 53  HI-----IMSKDAVSG----------------------TLRLFWTLLSKQEEMVQK--FV 83

Query: 201 ESV--NSYPWNWNAWSEL---KSLCTS--IDILNSLNLNNHWMKDYF---------LASA 244
           E V   +Y +  +         S+ T   I+  + L  +N     Y          L  A
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 245 YQELR------MH------KESLT----KYEYLQGTFSFSNY---------IQAQIAKAQ 279
             ELR      +       K  +         +Q    F  +          +  +   Q
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 280 YSLREFEQVEVIFEELLRNDPYRVDDMD----------MYSNVL------YAKECFSALS 323
             L + +       +   N   R+  +            Y N L         + ++A +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD--KNYLSAWTLMGHEY 381
            L+ ++ +T +++      + ++ S       S+ +    L  D  K+ L  +       
Sbjct: 264 -LSCKILLTTRFKQ-----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---- 313

Query: 382 VEMKNTPAAIDAYRRAVDINP----------RDYRA-W-----YGLGQAYEMMHMPLYAL 425
              ++ P      R  +  NP          RD  A W         +   ++   L  L
Sbjct: 314 -RPQDLP------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 426 ------HYFRK-SVFLQPND--------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470
                   F + SVF  P          S +W  +    +++ + ++ +  K        
Sbjct: 367 EPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVI---KSDVMVVVNKLHK--YSLVEK 419

Query: 471 NDSE------------AIALNQLAKLHHAL-GRDEEAAFYYKKDLERMEAEEREGPNMVE 517
              E             + L     LH ++         +   DL          P  ++
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL---------IPPYLD 470

Query: 518 ALIF--LATHCRAHGRFEEAEVYCTRLLDY 545
              +  +  H +     E   ++    LD+
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 82/559 (14%), Positives = 149/559 (26%), Gaps = 179/559 (32%)

Query: 3   SKESCRNELRSAIRQLS---NRCLYSAA---KW--AAEQLVGIEQDPAKYTPTNTRFQRG 54
           S+     +LR A+ +L    N  +       K   A +                 +    
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LS----YKVQCKMDFK 183

Query: 55  SS--SIRRRFRTND-----------ITSTPVAGVSYVSTPVMEEDEVEDSDFYLLAKSYF 101
               +++                  I     +   + S   +    ++     LL     
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--- 240

Query: 102 DCREYRRAAHVLRDQTGRRSV--F-LRCYAL----------YLAGEKRKEEEMIELEGPL 148
             + Y     VL +    ++   F L C  L          +L+        +      L
Sbjct: 241 --KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 149 GK-------SNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVE 201
                       ++     L RE+       T +P  L +    ++D     LA      
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVL------TTNPRRLSIIAESIRD----GLAT----- 343

Query: 202 SVNSYPWNWNAW--SELKSLCTSIDI-LNSLNLNNHWMKDYFLASAYQELRMHKESLTKY 258
                   W+ W       L T I+  LN L       +       +  L          
Sbjct: 344 --------WDNWKHVNCDKLTTIIESSLNVLEPAE--YRKM-----FDRL---------- 378

Query: 259 EYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLR-------NDPYRVDDMDMYSN 311
                 F  S +I   +    +       V V+  +L +            +    +Y  
Sbjct: 379 ----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 312 VLYAKECFSALSYLAHRVFMTDKYRPESC--------CIIGNY------YSLKG-QHEKS 356
           +    E   AL    HR  + D Y               +  Y      + LK  +H + 
Sbjct: 435 LKVKLENEYAL----HRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 357 VVYFRRALKLDKNYL--------SAWTLMGHEYVEMKNTPAAIDAYRRAV-DINPRDYRA 407
           +  FR  + LD  +L        +AW   G     + NT   +  Y+  + D +P+    
Sbjct: 490 MTLFRM-VFLDFRFLEQKIRHDSTAWNASG----SILNTLQQLKFYKPYICDNDPK---- 540

Query: 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467
                  YE +   + A+  F            L         ++   +L  A+      
Sbjct: 541 -------YERL---VNAILDF------------LPKIEENLICSKYTDLLRIALM----- 573

Query: 468 ANCNDSEAI---ALNQLAK 483
               + EAI   A  Q+ +
Sbjct: 574 ---AEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 51/332 (15%), Positives = 102/332 (30%), Gaps = 93/332 (28%)

Query: 269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHR 328
           +++  +  + QY  ++   V   FE+   ++    D  DM  ++L  +E    +      
Sbjct: 5   HHMDFETGEHQYQYKDILSV---FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-SKDA 60

Query: 329 VFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAW-------TLMG 378
           V  T +           +++L  + E+ V  F   + L  NY   +S         ++M 
Sbjct: 61  VSGTLRL----------FWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMT 109

Query: 379 HEYVE----MKNTPAAIDAY-----------RRAV-DINPRDYRAWYGLGQAYEMMHMP- 421
             Y+E    + N       Y           R+A+ ++ P       G         +  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------VLG 160

Query: 422 -----LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ-LHMLEEAIKCYRRAANCNDSEA 475
                +         V  + +    W+ +  C   E  L ML++    Y+   N      
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPN------ 212

Query: 476 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL-----ATHCRAHG 530
                 +     +     +     + L +     +   N    L+ L     A    A  
Sbjct: 213 --WTSRSDHSSNIKLRIHSIQAELRRLLK----SKPYEN---CLLVLLNVQNAKAWNA-- 261

Query: 531 RFEEAEVYC-----TR---LLDYTGPVSFTHL 554
            F    + C     TR   + D+    + TH+
Sbjct: 262 -F---NLSCKILLTTRFKQVTDFLSAATTTHI 289

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 72.5 bits (177), Expect = 3e-14
 Identities = 35/205 (17%), Positives = 64/205 (31%), Gaps = 15/205 (7%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL--MGHEYVEMKNTPAAIDAYRRAVDI 400
              Y +   + +  V    R +    +  +   L      Y   +N  AA+    +   +
Sbjct: 71  FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130

Query: 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460
                       Q    +     A    +K      + +   +A A          L++A
Sbjct: 131 E-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185

Query: 461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520
              ++  A+      + LN  A  H A GR E A    ++ L++            E LI
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-------DSGHPETLI 238

Query: 521 FLATHCRAHGRFEEA-EVYCTRLLD 544
            L    +  G+  E    Y ++L D
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKD 263

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 59/361 (16%), Positives = 109/361 (30%), Gaps = 77/361 (21%)

Query: 226 LNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREF 285
           ++SL+ +   +    L S       H  +  +     G  S    + A   +   +  + 
Sbjct: 6   MSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLEL-ALEGERLCNAGDC 64

Query: 286 EQVEVIFEELLR-NDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344
                 F+  ++           +YS                                +G
Sbjct: 65  RAGVAFFQAAIQAGTEDLRTLSAIYSQ-------------------------------LG 93

Query: 345 NYYSLKGQHEKSVVYFRRALKLDKN----YLSAWTL--MGHEYVEMKNTPAAIDAYRRAV 398
           N Y   G + K++ Y +  L L K+       A +   +G+    M     A     R +
Sbjct: 94  NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153

Query: 399 DINPRDY------RAWYGLGQAYEMM--HMPLY---------------ALHYFRKSVFL- 434
            +  +        RA Y LG  Y     H+                  A+ ++++++ L 
Sbjct: 154 TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213

Query: 435 -----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA------ANCNDSEAIALNQLAK 483
                +    R    +   Y    L   + AI+ ++             +E  A + L  
Sbjct: 214 RDLGDRGAQGRACGNLGNTYY--LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGN 271

Query: 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
            H  LG+ E+AA +YK+ L  +  E  E     ++   L         F  A  Y  R L
Sbjct: 272 SHIFLGQFEDAAEHYKRTLA-LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330

Query: 544 D 544
            
Sbjct: 331 A 331

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 42/173 (24%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDK----NYLSAWTL--MGHEYVEMKNTPAAIDAYRR 396
           +GN Y L G  + ++ + +  L++ +              +G+ ++ +     A + Y+R
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 397 AVDI------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
            + +         + ++ Y LG  Y ++H    A+ Y  +                    
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH------------------- 329

Query: 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
              L +         +       EA A   L   H A+G  E A  Y ++ L+
Sbjct: 330 ---LAI--------AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 72.5 bits (178), Expect = 6e-14
 Identities = 48/319 (15%), Positives = 101/319 (31%), Gaps = 46/319 (14%)

Query: 246 QELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDD 305
               + +E   + + ++       Y      +    L   E +E +  E        + +
Sbjct: 30  DAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89

Query: 306 MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK 365
           +D              L Y  +                G Y   + ++  ++ +F++A  
Sbjct: 90  ID-----KKQARLTGLLEYYFNF-------------FRGMYELDQREYLSAIKFFKKAES 131

Query: 366 LDK----NYLSAWTL--MGHEYVEMKNTPAAIDAYRRAVDI-------NPRDYRAWYGLG 412
                      A     M   Y  MK T  ++D  R+A +I       N R  +      
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191

Query: 413 QAYEMMHMPLYALHYFRKS--VFLQPNDSRLWIA----MAQCYETEQLHMLEEAIKCYRR 466
             +  +     A+ +F+K+  +       +L       +  C         E+AI  ++R
Sbjct: 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--SQSQYEDAIPYFKR 249

Query: 467 A------ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE-RMEAEEREGPNMVEAL 519
           A      +N   S   A   + ++H+ LG+ ++A  Y+ K +    +A +    +  E L
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309

Query: 520 IFLATHCRAHGRFEEAEVY 538
             L          +    +
Sbjct: 310 KSLYLSGPDEEAIQGFFDF 328

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 19/180 (10%)

Query: 342 IIGNYYSLKGQHEKSVVYFRRAL----KLDKNYLSAWTL--MGHEYVEMKNTPAAIDAYR 395
           +    +    Q+E ++ +F++A        +  L   TL  +G           AI  ++
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248

Query: 396 RAVDIN------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL------QPNDSRLWI 443
           RA+ +       P   +A++ + Q +  +     A  Y  K +            S    
Sbjct: 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308

Query: 444 AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
             +          ++             D E  A++ +AK +H     ++A+ Y+ K  +
Sbjct: 309 LKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID-VAKYYHERKNFQKASAYFLKVEQ 367

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 454 LHMLEEAIKCYRRA------ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507
                 AIK +++A            +A    ++++ ++ + +   +  Y ++  E  + 
Sbjct: 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175

Query: 508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
            E     +++     AT+     ++E+A  +  +   
Sbjct: 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 38/249 (15%), Positives = 79/249 (31%), Gaps = 45/249 (18%)

Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL----SAWTLMGHEYVEMKNTPAAIDA 393
               + G      G     V +F  A+++    L    + ++ +G+ Y  + +   A++ 
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69

Query: 394 YRRAVDINPRDY------RAWYGLGQAYEMMHMPLYALHYFRKS--VFLQPNDSRLWIA- 444
           +   + +           +A   LG   +++     A+   ++   +  + ND ++  A 
Sbjct: 70  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEAR 128

Query: 445 ----MAQCY------------------ETEQLHMLEEAIKCY------RRAANCNDSEAI 476
               +   Y                    E    L+ A+  Y        A     ++  
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188

Query: 477 ALNQLAKLHHALGRDEEAAFYYKKDLE-RMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
           A   L   H+ LG   +A   +++ L    E  ++       A   L       G FE A
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERRAYSNLGNAYIFLGEFETA 246

Query: 536 EVYCTRLLD 544
             Y  + L 
Sbjct: 247 SEYYKKTLL 255

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 48/220 (21%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLS----AWTL--MGHEYVEMKNTPAAIDAYRR 396
           +GN + L G    +V+   + L + K +            +G+ Y+ +     A + Y++
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 397 AVDINPRDY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
            + +  +        ++ Y LG  Y ++     A+ Y  K                    
Sbjct: 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------------------- 293

Query: 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE-RMEAEE 509
              L +         +  N    E  A   L   + ALG  ++A  + +K LE   E  +
Sbjct: 294 ---LAI--------AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 342

Query: 510 REG-----PNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
           + G      N+ +  + L      +             L+
Sbjct: 343 KSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G  Y+   Q + ++ + R AL  D  Y  AW  +G       +   A  A+   +     
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 404 --DYRAWYGLGQAYEMMHMPLYALHYFR 429
             D +    L      +       H+  
Sbjct: 86  RGDQQVVKELQVFLRRLAREDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 38/147 (25%)

Query: 354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413
           +         L    + +     +G  Y E +   AA+   R A+D +P    AW  LG+
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA--ANCN 471
                                                 +       A + +     A  +
Sbjct: 62  TL------------------------------------QGQGDRAGARQAWESGLAAAQS 85

Query: 472 DSEAIALNQLAKLHHALGRDEEAAFYY 498
             +   + +L      L R++    ++
Sbjct: 86  RGDQQVVKELQVFLRRLAREDALEHHH 112

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 36/115 (31%)

Query: 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448
           A  +     +     +    + LG+ Y                                 
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYA-------------------------------- 30

Query: 449 YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
               +    + A+   R A + + + ++A   L K     G    A   ++  L 
Sbjct: 31  ----EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 7/88 (7%)

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 516
           ++   +             +    L K +    + + A  + +  L+         P   
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYS 53

Query: 517 EALIFLATHCRAHGRFEEAEVYCTRLLD 544
            A  +L    +  G    A       L 
Sbjct: 54  VAWKWLGKTLQGQGDRAGARQAWESGLA 81

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY 427
            N   AW  +G+ Y +  +   AI+ Y++A++++P +  AWY LG AY        A+ Y
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 428 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 487
           ++K++ L PN++  W  +   Y   +    +EAI+ Y++A   + + A A   L      
Sbjct: 66  YQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123

Query: 488 LG 489
            G
Sbjct: 124 QG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 61.6 bits (151), Expect = 6e-12
 Identities = 32/95 (33%), Positives = 60/95 (63%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +GN Y  +G +++++ Y+++AL+LD N   AW  +G+ Y +  +   AI+ Y++A++++P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
            +  AWY LG AY        A+ Y++K++ L PN
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 59.3 bits (145), Expect = 4e-11
 Identities = 23/73 (31%), Positives = 46/73 (63%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +GN Y  +G +++++ Y+++AL+LD N   AW  +G+ Y +  +   AI+ Y++A++++P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 403 RDYRAWYGLGQAY 415
            +  A   LG A 
Sbjct: 109 NNAEAKQNLGNAK 121

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 44/138 (31%)

Query: 400 INPRDY-RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLE 458
           ++P +   AWY LG AY                                     +    +
Sbjct: 3   MDPGNSAEAWYNLGNAYY------------------------------------KQGDYD 26

Query: 459 EAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 518
           EAI+ Y++A   + + A A   L   ++  G  +EA  YY+K LE         PN  EA
Sbjct: 27  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEA 79

Query: 519 LIFLATHCRAHGRFEEAE 536
              L       G ++EA 
Sbjct: 80  WYNLGNAYYKQGDYDEAI 97

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 39/311 (12%), Positives = 99/311 (31%), Gaps = 34/311 (10%)

Query: 226 LNSLNLNNHWMKDYF-LASAYQELRMHKESLTKYEYLQGTFS--FSNYIQAQIAKAQYSL 282
            + +   +  M DY      Y       E L   E  Q   +     Y        ++  
Sbjct: 55  YSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQ 114

Query: 283 REFEQVEVIFE---ELLRNDPYRVDDMDMYSNVLYA----KECFSALSYL--AHRVFMTD 333
           +E+ +    +    + L      ++  + +  V  A    K+   ++ ++  A  ++   
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174

Query: 334 KYRP----ESCCIIGNYYSLKGQHEKSVVYFRRAL----KLDKNYLSAWTL--MGHEYVE 383
                   +S  +I   Y     ++K++ +   AL     +  +   A +L  + + Y  
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234

Query: 384 MKNTPAAIDAYRRAVDINPRDY-----RAWYGLGQAYEMMHMPLYALHYFRKSVFL---- 434
             +   A++ +++A  ++         +  +GL            A  +  + +      
Sbjct: 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294

Query: 435 --QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 492
             +          A   ET     + + +  + +    +          A +  +    E
Sbjct: 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAVFESSCHFE 353

Query: 493 EAAFYYKKDLE 503
           +AA +Y+K L+
Sbjct: 354 QAAAFYRKVLK 364

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 29/214 (13%), Positives = 74/214 (34%), Gaps = 41/214 (19%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
            G Y   + ++ +++ Y+R A K                  + +     + +        
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELP--------------FVSDDIEKAEFH-------- 144

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET-----EQLHML 457
                 + + +AY  M     ++++  +++ +  N     I   Q         +     
Sbjct: 145 ------FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY 198

Query: 458 EEAIKCYRRA------ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 511
           ++A+     A         +   AI+L  +A  +   G D+ A  +++K  +   + E+ 
Sbjct: 199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV--SREKV 256

Query: 512 GPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545
              + + L  L+      G+ ++A  +    LD+
Sbjct: 257 PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 21/208 (10%), Positives = 62/208 (29%), Gaps = 33/208 (15%)

Query: 349 LKGQHEKSVVYFRRALKL------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
            +     + +      +       D++ L  ++LM   +  M +       Y     +  
Sbjct: 24  RQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV-- 81

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
                   +    + +   L     F + ++                         EAI 
Sbjct: 82  --TELLETIETPQKKLTGLLKYYSLFFRGMYEF-----------------DQKEYVEAIG 122

Query: 463 CYRRAANCNDS------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 516
            YR A            +A    ++A+ ++ + +   + ++  + L+  +         +
Sbjct: 123 YYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182

Query: 517 EALIFLATHCRAHGRFEEAEVYCTRLLD 544
           ++L  +A +      +++A  +    L+
Sbjct: 183 QSLFVIAGNYDDFKHYDKALPHLEAALE 210

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 62.1 bits (152), Expect = 4e-12
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP- 402
           G      G + +S+  F +A++LD      W + G     ++    A+D Y   +++   
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72

Query: 403 -RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
             +   W     A   +               L+ + 
Sbjct: 73  EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYAL 425
           +       + L G    +  N   +ID + +A+ ++P + + W   G+A   +     A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 426 HYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471
             +   + +  +  +  +W A A       +   E   +     A   
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADAL--RYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 459
           +  ++   +Y  G           ++  F K++ L P +S+ W+   +      L   EE
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY--NLERYEE 58

Query: 460 AIKCYRRAA--NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
           A+ CY        ++         A     +   E  A   +   +
Sbjct: 59  AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 4/64 (6%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLS--AWTLMGHEYVEMKNTPAAIDAYRRAVDIN 401
           G       ++E++V  +   + + ++  +   W         ++      +       + 
Sbjct: 47  GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

Query: 402 PRDY 405
              +
Sbjct: 107 HHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 7/100 (7%)

Query: 436 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495
             +   +                E+I  + +A   +  E+       K  + L R EEA 
Sbjct: 3   DQNPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 496 FYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
             Y   +        E     +     A   R     E  
Sbjct: 61  DCYNYVINV-----IEDEYNKDVWAAKADALRYIEGKEVE 95

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +   +       +++  F   ++ D +Y+  +  +G  Y  +  T  AID Y + +++  
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 403 R--DYRAWYGLGQAYE 416
                +    L  A  
Sbjct: 73  EEGTQKDLSELQDAKL 88

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460
           +P D    Y L Q +        AL  F + V   P+    +  + + Y  E+L   ++A
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY--ERLDRTDDA 60

Query: 461 IKCYRRA--ANCNDSEAIALNQLAKLHHALGRDEEAAFYY 498
           I  Y +       +     L++L          E    ++
Sbjct: 61  IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 435 QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494
            P D     A+AQ +   +      A+  +      +         L KL+  L R ++A
Sbjct: 3   DPEDPFTRYALAQEHL--KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60

Query: 495 AFYYKKDLE 503
              Y + +E
Sbjct: 61  IDTYAQGIE 69

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 11/69 (15%), Positives = 27/69 (39%)

Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
                   +  E+++  N   A+  +   V+ +P     +Y LG+ YE +     A+  +
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 429 RKSVFLQPN 437
            + + +   
Sbjct: 65  AQGIEVARE 73

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 365 KLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA 424
           + D          G+E ++++N  AA+  Y +A+++NP +   +     AY  +     A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 425 LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 484
           +    +++ + P  S+ +  M        L+   EA+  Y++A   +       + L   
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLAL--SSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123

Query: 485 HHALG 489
              L 
Sbjct: 124 ELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 59.1 bits (144), Expect = 7e-11
 Identities = 21/107 (19%), Positives = 48/107 (44%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN        E +V ++ +A++L+      +      Y ++ N   A+    RA+ I+P 
Sbjct: 19  GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
             +A+  +G A   ++  + A+ Y++K++ L P++      +     
Sbjct: 79  YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 44/217 (20%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKN----YLSAWTL--MGHEYVEMKNTPAAIDAYRR 396
               +    Q E++   + +  +   N    + +A      G    +++  P A+    +
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456
           A  +              Y     P  A     +                +  E      
Sbjct: 102 ASVM--------------YVENGTPDTAAMALDR--------------AGKLMEPLD--- 130

Query: 457 LEEAIKCYRRAANC------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 510
           L +A+  Y++AA            A  + + ++L     + +EAA   +K+   M  E  
Sbjct: 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS-MYKEME 189

Query: 511 EGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG 547
             P   +  I           +  A+          G
Sbjct: 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPG 226

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 63.9 bits (155), Expect = 4e-11
 Identities = 22/206 (10%), Positives = 54/206 (26%), Gaps = 5/206 (2%)

Query: 299 DPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGN-YYSLKGQHEKSV 357
                D  D +  VL   E       L       +               SL+    + +
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152

Query: 358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417
            Y    ++        W         +++    ++     ++ + ++Y AW       + 
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212

Query: 418 MHMPLYALHYFRKSVFLQPNDSRLW----IAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473
             +    L Y  + +     ++ +W      ++         +LE  ++           
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272

Query: 474 EAIALNQLAKLHHALGRDEEAAFYYK 499
              A N L  +    G  +      +
Sbjct: 273 NESAWNYLKGILQDRGLSKYPNLLNQ 298

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 17/143 (11%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 363 ALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422
            +     +   +          + +  A    R A+++N  +Y  W+      + +   L
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 423 Y-ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481
           +  ++Y    +  QP + ++W         E L    + ++      N +     A    
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLV--EWLRDPSQELEFIADILNQDAKNYHAWQHR 206

Query: 482 AKLHHALGRDEEAAFYYKKDLER 504
             +       +    Y  + L+ 
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKE 229

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 27/162 (16%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
              C  IG  Y++     ++   F R++  DK+   A+   G  Y + +    AI   + 
Sbjct: 37  SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96

Query: 397 AV-DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 455
           A+  +       +  LG  +++    +              N       +A  Y   +  
Sbjct: 97  ALIQLRGNQLIDYKILGLQFKLFACEVLY------------N-------IAFMY--AKKE 135

Query: 456 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 497
             ++A +    A +            +K+  A+    +   Y
Sbjct: 136 EWKKAEEQLALATSMKSEPR-----HSKIDKAMECVWKQKLY 172

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 21/143 (14%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
            G    + K+   A+DA+     +     R  + +G  Y ++     A   F +S+    
Sbjct: 12  EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS----------------EAIALNQ 480
           + +  +      Y   Q    + AIK  + A                          L  
Sbjct: 69  HLAVAYFQRGMLY--YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN 126

Query: 481 LAKLHHALGRDEEAAFYYKKDLE 503
           +A ++      ++A         
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATS 149

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460
           +  +  + +  G           AL  F     +Q   SR+   +   Y    L  + EA
Sbjct: 2   SLVEAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYT--ILKNMTEA 56

Query: 461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520
            K + R+ N +   A+A  Q   L++   + + A    K+ L ++        N +    
Sbjct: 57  EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQLIDYK 110

Query: 521 FLATHCRAHGRFEEAEVY 538
            L    +        EV 
Sbjct: 111 ILGLQFKLFA----CEVL 124

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 42/173 (24%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRR 396
           +GN + L G    +V+   + L + K +        A++ +G+ Y+ +     A + Y++
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

Query: 397 AVDINPRDY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
            + +  +        ++ Y LG  Y ++     A+ Y  K            +A+AQ  +
Sbjct: 75  TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-----------LAIAQELK 123

Query: 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
                                  E  A   L   + ALG  ++A  + +K LE
Sbjct: 124 DRI-------------------GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 42/173 (24%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTL--MGHEYVEMKNTPAAIDAYRR 396
           +GN + L G    +V+   + L + K +            +G+ Y+ +     A + Y++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 397 AVDINPRDY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
            + +  +        ++ Y LG  Y ++     A+ Y  K                    
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------------------- 289

Query: 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
              L +         +       E  A   L   + ALG  ++A  + +K LE
Sbjct: 290 ---LAI--------AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 51/202 (25%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +GN   + G  ++++V  +R L +                E+ +      A         
Sbjct: 89  LGNTLKVLGNFDEAIVCCQRHLDI--------------SRELNDKVGEARAL-------- 126

Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
                 Y LG  Y                 F +                +  + L+ A+ 
Sbjct: 127 ------YNLGNVYHAKGKSFGCPGPQDTGEFPE----------------DVRNALQAAVD 164

Query: 463 CY------RRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 516
            Y        A     ++  A   L   H+ LG   +A   +++ L  +  E  +     
Sbjct: 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL-IAKEFGDKAAER 223

Query: 517 EALIFLATHCRAHGRFEEAEVY 538
            A   L       G FE A  Y
Sbjct: 224 RAYSNLGNAYIFLGEFETASEY 245

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 458 EEAIKCYRRAANCND----SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 513
              +  +  A         + +   +QL   +  L    +A  Y+  DL  +     +  
Sbjct: 22  RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-LARTIGDQL 80

Query: 514 NMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
              +A   L    +  G F+EA V C R LD
Sbjct: 81  GEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 23/73 (31%), Positives = 46/73 (63%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
           +GN Y  +G +++++ Y+++AL+LD N   AW  +G+ Y +  +   AI+ Y++A++++P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 403 RDYRAWYGLGQAY 415
            +  A   LG A 
Sbjct: 75  NNAEAKQNLGNAK 87

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query: 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY 427
            N   AW  +G+ Y +  +   AI+ Y++A++++P +  AWY LG AY        A+ Y
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 428 FRKSVFLQPN 437
           ++K++ L PN
Sbjct: 66  YQKALELDPN 75

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 28/180 (15%)

Query: 359 YFRRALKLDKNY------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----NPRDY-R 406
           Y     +             A  ++G+ Y  M     A  +++          +     R
Sbjct: 8   YALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67

Query: 407 AWYGLGQAYEMMHMPLYALHYFRKS--VFLQPNDSRLWIA-----MAQCYETEQLHMLEE 459
           A + +G    M      A   F +   +     +  L  +     +A          L  
Sbjct: 68  ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL--HFGDLAG 125

Query: 460 AIKCYRRA------ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE-RMEAEEREG 512
           A + Y ++      A+   + A A   L  L        EA  ++ +  +   E E+ E 
Sbjct: 126 ARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEA 185

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 29/174 (16%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDK----NYLSAWTL--MGHEYVEMKNTPAAIDAYRR 396
           +G  Y+   + +++   F+   +  +    +      L  +G       N  AA   +  
Sbjct: 32  LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91

Query: 397 AVDI-------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKS--VFLQPNDSRLWIA--- 444
             ++               Y +            A   + KS     Q +D ++ IA   
Sbjct: 92  ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAF 150

Query: 445 --MAQCYETEQLHMLEEAIKCYRRA------ANCNDSEAIALNQLAKLHHALGR 490
             +      +Q   L EA + + RA         +++    + +L  L H    
Sbjct: 151 RGLGDLA--QQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 9/137 (6%)

Query: 414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN---- 469
           A+E     L         +      S     +   Y    +   +EA   ++        
Sbjct: 2   AFEAHDYALAERQAQAL-LAHPATASGARFMLGYVYA--FMDRFDEARASFQALQQQAQK 58

Query: 470 CND--SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR 527
             D  +E  AL+Q+  +    G  + A   + ++ E + +   +          +AT   
Sbjct: 59  SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118

Query: 528 AHGRFEEAEVYCTRLLD 544
             G    A     + L 
Sbjct: 119 HFGDLAGARQEYEKSLV 135

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 18/155 (11%)

Query: 361 RRALKLDKNYLSAWTLM--GHEYVEMKNTPA---AIDAYRRAVDINPRDYRAWYGLGQAY 415
               K+  +  +  T     H+Y+   +  +   A +     V  +P    A        
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243

Query: 416 EMMHM----------PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 465
            + H            L        ++    N S ++   A           +E+ +   
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA--LVKGKTDESYQAIN 301

Query: 466 RAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500
              +   S  +    L K++   G + EAA  Y  
Sbjct: 302 TGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLT 335

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 266 SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP---------YRVDDMDMYSNVLYAK 316
             +N+ QA         +   +   +  E++++ P           VD +    + L  K
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255

Query: 317 ECFSALSYLAHRVFMTDKYR-PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT 375
           +  +  + + + V + +         I      +KG+ ++S       + L+ ++L  + 
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYV 314

Query: 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
           L+G  Y        A DAY  A ++ P      Y
Sbjct: 315 LLGKVYEMKGMNREAADAYLTAFNLRP-GANTLY 347

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 15/137 (10%), Positives = 37/137 (27%), Gaps = 16/137 (11%)

Query: 344 GNYYSLKG---QHEKSVVYFRRALKLDKNYLSAWTLMGHEYV--------EMKNTPAAID 392
            + Y L G      ++       ++    +  A        +        + K   A   
Sbjct: 203 AHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262

Query: 393 AYRRAVDINPRDYRAWY--GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
                V +   +  +        +  +      +       + L+ +    ++ + + YE
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321

Query: 451 TEQLHMLEEAIKCYRRA 467
            +   M  EA   Y  A
Sbjct: 322 MKG--MNREAADAYLTA 336

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 19/173 (10%), Positives = 36/173 (20%), Gaps = 21/173 (12%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP-----LYALHYFRKS 431
           +     +  N P           I P          QA++ +          A     + 
Sbjct: 166 LLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEI 225

Query: 432 VFLQPNDSRLWIAMAQCYETEQLHM------LEEAIKCYRRA--ANCNDSEAIALNQLAK 483
           V   P  +      A                L                ++ +I     A 
Sbjct: 226 VQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 285

Query: 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE 536
                G+ +E+       ++          +     + L       G   EA 
Sbjct: 286 SALVKGKTDESYQAINTGIDL-------EMS-WLNYVLLGKVYEMKGMNREAA 330

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 23/120 (19%)

Query: 351 GQHEKSVVYFRRALKL---DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA 407
           G   ++V Y+ +A+      K+    +  +G  +  +     A       V   P     
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467
                     +      +    K +    +D                    E I+ Y++A
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDD--------------------ETIQSYKQA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 457 LEEAIKCYRRA---ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 513
             +A+  Y +A          A     L      LG   +A       +++        P
Sbjct: 6   EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------P 58

Query: 514 NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546
           N     +F A      GR+E+      +++  T
Sbjct: 59  NHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 15/123 (12%), Positives = 27/123 (21%), Gaps = 39/123 (31%)

Query: 390 AIDAYRRAVDIN---PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446
           A+  Y +A+            + GLG  +                               
Sbjct: 9   AVPYYEKAIASGLQGKDLAECYLGLGSTFR------------------------------ 38

Query: 447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 506
                  L    +A            +        A + + LGR E+      K +    
Sbjct: 39  ------TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92

Query: 507 AEE 509
            +E
Sbjct: 93  DDE 95

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 6/61 (9%), Positives = 19/61 (31%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G+ +   G++ K+       +K   N+ +           +      ++   + +     
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 404 D 404
           D
Sbjct: 94  D 94

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 4/140 (2%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
           G+  +  K    AID Y +A+ I P +         AY        A      +  + P 
Sbjct: 18  GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77

Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDSEAIALNQLAKLHHALGRDEEAA 495
            S+ W  +        +   + A + Y +      N         L      +      A
Sbjct: 78  YSKAWSRLGLARF--DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135

Query: 496 FYYKKDLERMEAEEREGPNM 515
                D++      R    M
Sbjct: 136 EPPADDVDDAAGASRGAGGM 155

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 7/132 (5%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN    + ++ K++  + +AL +        +     Y        A +    A  ++P+
Sbjct: 18  GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
             +AW  LG A   M     A   + K +  + N                L   +  I+ 
Sbjct: 78  YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG-------GSDAMKRGLETTKRKIEE 130

Query: 464 YRRAANCNDSEA 475
             R A     + 
Sbjct: 131 ANRGAEPPADDV 142

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 2/126 (1%)

Query: 362 RALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP 421
               ++ +        G+E  +  + P A+  Y  A+  NP+D + +      Y  +   
Sbjct: 7   HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66

Query: 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481
             AL    + + L+P   + +   A     E +    +A+  Y++A + + S   A +  
Sbjct: 67  QLALKDCEECIQLEPTFIKGYTRKAAAL--EAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

Query: 482 AKLHHA 487
            +   A
Sbjct: 125 QRCMMA 130

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 16/107 (14%), Positives = 40/107 (37%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN    KG + +++ ++  A+K +      ++     Y ++     A+      + + P 
Sbjct: 23  GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
             + +     A E M     A+  ++K++ L  +         +C  
Sbjct: 83  FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 12/73 (16%), Positives = 32/73 (43%)

Query: 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406
           Y+   + + ++      ++L+  ++  +T        MK+   A+D Y++A+D++     
Sbjct: 60  YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119

Query: 407 AWYGLGQAYEMMH 419
           A  G  +     +
Sbjct: 120 AADGYQRCMMAQY 132

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN    +   EK+ V++ +A++LD + ++ +      Y E K     +    +AV++   
Sbjct: 15  GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74

Query: 404 DY-------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
                    +A    G A++  +    A+ +F +S+    +
Sbjct: 75  TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 14/106 (13%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH 426
             +   A   +G+   + K+   A   Y +A++++P +   +      Y         + 
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 427 YFRKSVFLQPNDSRLWIAMAQCYE-----TEQLHMLEEAIKCYRRA 467
           +  K+V +       +  +A+         ++ + L  A++ + R+
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 25/186 (13%), Positives = 54/186 (29%), Gaps = 19/186 (10%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDI-----NPRDY-RAWYGLGQAYEMMHMPLYALHYFRK 430
               Y   K    A D++ +A D      N  +    +    + ++     + A+     
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 431 SVFLQPNDSR------LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIAL 478
           ++ +  +  +          + +  E + LH   +AI CY  A      +          
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILEND-LHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161

Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538
            + A L    G+  EA+  Y K ++          ++ +  +       A      A   
Sbjct: 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221

Query: 539 CTRLLD 544
                 
Sbjct: 222 LQEGQS 227

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 36/243 (14%), Positives = 76/243 (31%), Gaps = 44/243 (18%)

Query: 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS------AWTL--MGHEYVEMKNTPAA 390
              I+   Y  + +++ +      AL + +  L       A TL  +   Y +      A
Sbjct: 71  MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 130

Query: 391 IDAYRRAVDINPRDYRAWYG------------LGQAYEMMHMPLYALHYFRKSV-----F 433
               +RA++I         G            L    +         +Y+++++      
Sbjct: 131 EPLCKRALEI----REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186

Query: 434 LQPNDSRLWIAM---AQCYETEQLHMLEEAIKCYRRA-ANCNDSE--------AIALNQL 481
           L P+D  +       A CY   +    ++A   Y+      ++ E               
Sbjct: 187 LGPDDPNVAKTKNNLASCY--LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244

Query: 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
            +     G+ ++   + +      +A + + P +   L  L    R  G+FE AE     
Sbjct: 245 EEREECKGKQKDGTSFGEYGG-WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303

Query: 542 LLD 544
            + 
Sbjct: 304 AMR 306

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 36/234 (15%), Positives = 70/234 (29%), Gaps = 44/234 (18%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTL--MGHEYVEMKNTPAAIDAY 394
           +   Y+ +G++E +V   ++AL+  +          A  L  +   Y +      A +  
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 395 RRAVDINPRDYRAWYG------------LGQAYEMMHMPLYALHYFRKSV-----FLQPN 437
             A+ I         G            L   Y        A    ++++      L  +
Sbjct: 93  NDALAI----REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148

Query: 438 DSRLWIAM---AQCYETEQLHMLEEAIKCYRRAAN-------CNDSE-AIALNQLAKLHH 486
              +   +   A   +       EE    Y+RA          +D   A   N LA  + 
Sbjct: 149 HPDVAKQLNNLALLCQ--NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206

Query: 487 ALGRDEEAAFYYKKDLERMEAEE--REGPNMVEALIFLATHCRAHGRFEEAEVY 538
             G+ ++A   YK+ L R    E            +         G+ ++   +
Sbjct: 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 41/199 (20%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLS------AWTL--MGHEYVEMKNTPAAIDAY 394
           +   Y  +G+++++    +RAL++ +  L       A  L  +                Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176

Query: 395 RRAVDINPRDYRAWYG------------LGQAYEMMH-----MPLY--ALHYFRKSVF-- 433
           +RA++I    Y+   G            L   Y           LY   L    +  F  
Sbjct: 177 QRALEI----YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232

Query: 434 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND------SEAIALNQLAKLHHA 487
           +   +  +W+   +  E       ++                   +    L  L  L+  
Sbjct: 233 VDDENKPIWMHAEEREE--CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR 290

Query: 488 LGRDEEAAFYYKKDLERME 506
            G+ E A    +  +   +
Sbjct: 291 QGKFEAAETLEEAAMRSRK 309

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 44/243 (18%)

Query: 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTL--MGHEYVEMKNTPAA 390
              I+   Y  + +++++      AL + +  L       A TL  +   Y +      A
Sbjct: 45  MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104

Query: 391 IDAYRRAVDINPRDYRAWYG------------LGQAYEMMHMPLYALHYFRKSV-----F 433
               +RA++I         G            L    +         +Y+R+++      
Sbjct: 105 EPLCKRALEI----REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160

Query: 434 LQPNDSRLWIAM---AQCYETEQLHMLEEAIKCYRRAANC---------NDSEAIALNQL 481
           L P+D  +       A CY   +    ++A   Y+              N          
Sbjct: 161 LGPDDPNVAKTKNNLASCY--LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA 218

Query: 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
            +   +  +  ++A Y +      +A + + P +   L  L    R  G+ E A      
Sbjct: 219 EEREESKDKRRDSAPYGEYGS-WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277

Query: 542 LLD 544
              
Sbjct: 278 ASR 280

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 29/199 (14%), Positives = 56/199 (28%), Gaps = 41/199 (20%)

Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLS------AWTL--MGHEYVEMKNTPAAIDAY 394
           +   Y  +G+++++    +RAL++ +  L       A  L  +                Y
Sbjct: 91  LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150

Query: 395 RRAVDINPRDYRAWYG------------LGQAYEMMH-----MPLY--ALHYFRKSVFLQ 435
           RRA++I    Y    G            L   Y           LY   L    +  F  
Sbjct: 151 RRALEI----YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGS 206

Query: 436 --PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND------SEAIALNQLAKLHHA 487
              ++  +W+   +  E        ++       +          +    L  L  L+  
Sbjct: 207 VNGDNKPIWMHAEEREE--SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR 264

Query: 488 LGRDEEAAFYYKKDLERME 506
            G+ E A           +
Sbjct: 265 QGKLEAAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 35/240 (14%), Positives = 65/240 (27%), Gaps = 48/240 (20%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTL--MGHEYVEMKNTPAAIDAYR 395
            ++ S       +V   ++AL+  +          A  L  +   Y +      A     
Sbjct: 8   HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67

Query: 396 RAVDINPRDYRAWYG------------LGQAYEMMHMPLYALHYFRKSV-----FLQPND 438
            A+ I         G            L   Y        A    ++++      L    
Sbjct: 68  DALAI----REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123

Query: 439 SRLWIAM---AQCYETEQLHMLEEAIKCYRRAANCNDSE--------AIALNQLAKLHHA 487
             +   +   A   +       EE    YRRA     +         A   N LA  +  
Sbjct: 124 PDVAKQLNNLALLCQ--NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181

Query: 488 LGRDEEAAFYYKKDLERMEAEEREG----PNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
            G+ ++A   YK+ L R    E+E      +     +       +  +  ++  Y     
Sbjct: 182 QGKYQDAETLYKEILTRA--HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 458 EEAIKCYRRAANCNDSE--------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE- 508
             A+   ++A    +          A  LN LA ++    + +EAA      L   E   
Sbjct: 18  GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL 77

Query: 509 EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
            ++ P +   L  LA      G+++EAE  C R L+
Sbjct: 78  GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 11/118 (9%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN    K   + ++ ++ +A +LD   ++  T     Y E  +     +   +A+++   
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

Query: 404 DY-------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL 454
           +        +A+  +G +Y        A+H++ KS+            + +C + E++
Sbjct: 71  NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD----VLKKCQQAEKI 124

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
           +G++  + K+   A+  Y +A +++P +          Y              K++ +  
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 437 ND-------SRLWIAMAQCYETEQLHMLEEAIKCYRRA 467
            +       ++ +  +   Y   +    ++AI  Y ++
Sbjct: 70  ENREDYRQIAKAYARIGNSY--FKEEKYKDAIHFYNKS 105

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 10/78 (12%), Positives = 29/78 (37%)

Query: 458 EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE 517
           + A+K Y +A   + +    +   A ++   G   +     +K +E       +   + +
Sbjct: 21  DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80

Query: 518 ALIFLATHCRAHGRFEEA 535
           A   +        ++++A
Sbjct: 81  AYARIGNSYFKEEKYKDA 98

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 22/140 (15%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
            N Y     +E ++ ++ +A++L+ +    +      Y+  +    A+    RA++++ +
Sbjct: 20  ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI-- 461
             + +Y    +   +     AL  +   V ++P+D    +   +C +  +    E AI  
Sbjct: 80  YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 139

Query: 462 -KCYRRAANCNDSEAIALNQ 480
            +  R   +  D E++ +  
Sbjct: 140 DEHKRSVVDSLDIESMTIED 159

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 43/314 (13%), Positives = 83/314 (26%), Gaps = 37/314 (11%)

Query: 271 IQAQIAKAQYSLREFEQVEVIFEELLR-----NDPYRVDDMDMYSNVLYAKECFS-ALSY 324
           ++AQ+A         ++ E + +  L          R+    +   VL+ K   + +L+ 
Sbjct: 19  LRAQVAIND---GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 75

Query: 325 LAHRVFMTDKYRP-----ESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--------NYL 371
           +     M  ++        S          +G  + +     +A +L           + 
Sbjct: 76  MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135

Query: 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDI----NPRDYRAWYG-LGQAYEMMHMPLYALH 426
               +             A  + R  +++     P+        L Q          A  
Sbjct: 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195

Query: 427 YFRKSVFL--QPNDSRLWIAMAQCYETEQLHM---LEEAIKCYRRAAN----CNDSEAIA 477
              +   L         WI+ A         M      A    R  A      N      
Sbjct: 196 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255

Query: 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV 537
              +A+    LG  E A    ++  E   +      ++   L+ L       GR  +A+ 
Sbjct: 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQR 314

Query: 538 YCTRLLDYTGPVSF 551
                L       F
Sbjct: 315 VLLDALKLANRTGF 328

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 30/226 (13%), Positives = 48/226 (21%), Gaps = 37/226 (16%)

Query: 349 LKGQHEKSVVYFRRALKLDKNYLSAWT---LMGHEYVE----MKNTPAAIDAYRRAVDIN 401
           L     +S+  F      D++   AW      G            +         +V I+
Sbjct: 18  LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS 77

Query: 402 PRDYRAWYGLGQAYEMMHMPL---------YALHYFR------------KSVFLQPNDSR 440
                A   +G  Y  +  P+         +A                  +         
Sbjct: 78  MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLV 137

Query: 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYY 498
            W+        E+     + I   + A    D      A          L    EA    
Sbjct: 138 AWMKAVVYGAAERW---TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR- 193

Query: 499 KKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
              L                  +LA   R+ G    A      L  
Sbjct: 194 ---LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
           G++ + + N   A+  Y  A+ ++P ++  +     AY        A     K+V L+P+
Sbjct: 11  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70

Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485
             + +   A     E L+  EEA + Y        +       L  + 
Sbjct: 71  WGKGYSRKAAAL--EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 17/105 (16%), Positives = 41/105 (39%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN     G  + ++  +  A+KLD +    ++     Y +  +   A +   + VD+ P 
Sbjct: 11  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448
             + +     A E ++    A   + + +  + N+ +L   +   
Sbjct: 71  WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
           G EY    + P A+ AY   +   P D R +     A   +     A+    K++   PN
Sbjct: 11  GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70

Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDSEAIALNQLAKLHHALGR 490
             R +I  A       +     A++    A       +   +  ++ +L++   +
Sbjct: 71  FVRAYIRKATAQ--IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 31/96 (32%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           G  Y  K     +V  +   +K        ++       ++ + P AI    +A++ +P 
Sbjct: 11  GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
             RA+     A   +     AL     +       +
Sbjct: 71  FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 23/183 (12%), Positives = 60/183 (32%), Gaps = 1/183 (0%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN   +  ++ ++   + RA+  +      +T     Y++M+    A+   RRA++++ +
Sbjct: 11  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
             +A + LGQ    M     A+   +++  L       +                     
Sbjct: 71  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS-ALRIAKKKRWNSIE 129

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523
            RR    ++  +     +A        + +      +D   + A++       +  +   
Sbjct: 130 ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADM 189

Query: 524 THC 526
              
Sbjct: 190 DEL 192

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
                G+   +      A+  Y + +   P++   +     A   +     A+   ++ +
Sbjct: 6   KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65

Query: 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473
                   + I     Y   +L + + A+   +      D 
Sbjct: 66  RYTSTAEHVAIRSKLQY---RLELAQGAVGSVQIPVVEVDE 103

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 362 RALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP 421
           R   ++          G+EY +  + P A+  Y  AV  +P +   +         +   
Sbjct: 4   RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63

Query: 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481
             AL      + L     + +I  A C     +    +A + Y  A   + S   A   +
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACL--VAMREWSKAQRAYEDALQVDPSNEEAREGV 121

Query: 482 AK 483
             
Sbjct: 122 RN 123

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 14/105 (13%), Positives = 38/105 (36%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN Y  KG +  ++ ++  A+K D      ++       ++     A+D     + ++ +
Sbjct: 20  GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448
             + +         M     A   +  ++ + P++      +  C
Sbjct: 80  FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 350 KGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW 408
           +G  E ++      L+ +      A+ LMG+ Y ++ +   A++ Y+ A+++NP D  A 
Sbjct: 13  QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPAL 71

Query: 409 YGLGQAYEMM 418
                  +++
Sbjct: 72  QARKMVMDIL 81

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
           G+     +  P A   Y RA+  NP     +      Y  M  P  AL   R+++ L   
Sbjct: 16  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75

Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467
             +    + QC    ++   +EAI   +RA
Sbjct: 76  SVKAHFFLGQCQ--LEMESYDEAIANLQRA 103

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 18/95 (18%), Positives = 42/95 (44%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN   +  ++ ++   + RA+  +      +T     Y++M+    A+   RRA++++ +
Sbjct: 16  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
             +A + LGQ    M     A+   +++  L    
Sbjct: 76  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 32/185 (17%)

Query: 337 PESCCIIGNYYSLKGQ-----HEKSVVYFRRALKLDKNYLSAWTLMGHEY-----VEMKN 386
           P++   +G  Y  +G        +SV +FR A   ++   S    MG  Y     V  ++
Sbjct: 111 PQAQQNLGVMY-HEGNGVKVDKAESVKWFRLAA--EQGRDSGQQSMGDAYFEGDGVT-RD 166

Query: 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM----PLYALHYFRKSVFLQPNDSRLW 442
              A + Y +A +    +  +   LG  Y            +  ++RKS      D    
Sbjct: 167 YVMAREWYSKAAEQG--NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA--TSGDELGQ 222

Query: 443 IAMAQCYETEQLHM--LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR-----DEEAA 495
           + +A  Y           ++   + ++A   +S A    +L  +    G        +A 
Sbjct: 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQ--FRLGYILEQ-GLAGAKEPLKAL 279

Query: 496 FYYKK 500
            +Y+K
Sbjct: 280 EWYRK 284

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 26/187 (13%), Positives = 66/187 (35%), Gaps = 36/187 (19%)

Query: 337 PESCCIIGNYYSLKGQ-----HEKSVVYFRRALKLDKNYLSAWTLMGHEY-----VEMKN 386
             +  ++G  Y + G+     + ++V+++++A    K    A   +G  Y     V+  +
Sbjct: 75  TPAEYVLGLRY-MNGEGVPQDYAQAVIWYKKAA--LKGLPQAQQNLGVMYHEGNGVK-VD 130

Query: 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM----PLYALHYFRKSVFLQPNDSRLW 442
              ++  +R A +           +G AY          + A  ++ K+   +  +    
Sbjct: 131 KAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA--EQGNVWSC 186

Query: 443 IAMAQCYE----TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR-----DEE 493
             +   Y      E+      + + YR++A   D        LA +++  G        +
Sbjct: 187 NQLGYMYSRGLGVERND--AISAQWYRKSATSGDEL--GQLHLADMYY-FGIGVTQDYTQ 241

Query: 494 AAFYYKK 500
           +   + +
Sbjct: 242 SRVLFSQ 248

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 36/187 (19%)

Query: 337 PESCCIIGNYYSLKGQ-----HEKSVVYFRRALKLDKNYLSAWTLMGHEY-----VEMKN 386
              C ++GN Y   GQ       K++ Y+ +A   D  Y      +G  Y     V  ++
Sbjct: 74  SNGCHLLGNLY-YSGQGVSQNTNKALQYYSKAC--DLKYAEGCASLGGIYHDGKVVT-RD 129

Query: 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM----PLYALHYFRKSVFLQPNDSRLW 442
              A++ + +A D+N  D      LG  Y+           AL  + K+  L   DS   
Sbjct: 130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGC 185

Query: 443 IAMAQCYE----TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR-----DEE 493
                 Y       +    +EA+  Y +A    +        L  +    G      +++
Sbjct: 186 FNAGNMYHHGEGATKNF--KEALARYSKACELEN--GGGCFNLGAM-QYNGEGVTRNEKQ 240

Query: 494 AAFYYKK 500
           A   +KK
Sbjct: 241 AIENFKK 247

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 21/125 (16%)

Query: 353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA----------AIDAYRRAVDINP 402
            E+         K +       T  G   +E+    +          AI  +  A+ I+P
Sbjct: 18  FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77

Query: 403 RDYRAWYGLGQAYEMMHMPLY-----------ALHYFRKSVFLQPNDSRLWIAMAQCYET 451
           +   A + +G AY                   A  +F+++V  QP+++    ++    + 
Sbjct: 78  KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137

Query: 452 EQLHM 456
            QLH 
Sbjct: 138 PQLHA 142

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL---MGHEYVEMKNTPAAIDAYRRAVDI 400
           GN     G +  ++  + +AL LD        L       ++++++   A     +A++ 
Sbjct: 35  GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94

Query: 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
           +  D +A Y   QA E +     A+   ++ V L+P +
Sbjct: 95  DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDY--------RAWYGLGQAYEMMHMPLYALHYFR 429
           G+E  +  +   A+ AY +A+ ++            RA       +  +     A     
Sbjct: 35  GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRA-----ACHLKLEDYDKAETEAS 89

Query: 430 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485
           K++     D +     +Q  E  +L  L++A+   +R  +      +    L  + 
Sbjct: 90  KAIEKDGGDVKALYRRSQALE--KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	557
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.95
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.89
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.86
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.82
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.81
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.78
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.76
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.75
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.73
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.71
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.7
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.68
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.67
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.66
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.64
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.63
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.6
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.6
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.59
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.56
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.52
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.43
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.4
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.34
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.21
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.21
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.14
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.98
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.95
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.92
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.88
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.88
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.68
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.67
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.56
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.56
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.54
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.53
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.52
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.52
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.48
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.46
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.07
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.01
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.93
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.85
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.74
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.59
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.49
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.16
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.0
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.92
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.85
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.82
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.62
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.58
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.39
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.36
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.29
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.11
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.06
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.83
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.66
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.49
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.23
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.72
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.7
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.7
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.58
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.52
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.3
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.99
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.83
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.65
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.2
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.59
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.22
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	82.73
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	81.16
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.95

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.8e-42  Score=344.04  Aligned_cols=367  Identities=20%  Similarity=0.209  Sum_probs=351.3

Q ss_pred             chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705          155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH  234 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~  234 (557)
                      .++++.+.+.+.......|+++.++..+|.++...|++++|+..++++++.+|.+..+|..+                  
T Consensus        12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l------------------   73 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL------------------   73 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH------------------
Confidence            34566666777777778999999999999999999999999999999999999999988777                  


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705          235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY  314 (557)
Q Consensus       235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  314 (557)
                             |.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+....+..++.++.
T Consensus        74 -------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A           74 -------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             -------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             -------HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY  394 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  394 (557)
                      ..++++++...+.+++..+|..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  226 (388)
T 1w3b_A          147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY  226 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      ++++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..  .|++++|+.+|++++...|.+
T Consensus       227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE--KGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCccc
Confidence            999999999999999999999999999999999999999999999999999999999  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHL  554 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~  554 (557)
                      +.++..+|.++...|++++|+..|+++++       ..|+++.++..+|.++.+.|++++|...|+++++++|. ...++
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~  376 (388)
T 1w3b_A          305 ADSLNNLANIKREQGNIEEAVRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY  376 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTT-------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHH
Confidence            99999999999999999999999999998       78999999999999999999999999999999999865 44554


Q ss_pred             hc
Q 008705          555 KN  556 (557)
Q Consensus       555 ~~  556 (557)
                      .+
T Consensus       377 ~~  378 (388)
T 1w3b_A          377 SN  378 (388)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6.8e-42  Score=339.81  Aligned_cols=382  Identities=17%  Similarity=0.150  Sum_probs=351.9

Q ss_pred             HHHHHhhhhhhHHHHHHHHhhhcCCchh---hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcC
Q 008705           95 LLAKSYFDCREYRRAAHVLRDQTGRRSV---FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKN  171 (557)
Q Consensus        95 ~la~~~~~~~~y~~A~~~l~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~  171 (557)
                      .+|..++..|+|++|+..++.+....|.   .....+.... ..++                    ++.+...+....+.
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~--------------------~~~a~~~~~~a~~~   62 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRR--------------------LDRSAHFSTLAIKQ   62 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--------------------HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--------------------HHHHHHHHHHHHhc
Confidence            3699999999999999999987643222   2222222111 1222                    33344445556667


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705          172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH  251 (557)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~  251 (557)
                      +|.++.+++.+|.++...|++++|+..|+++++.+|.+..+|..+                         |.++...|++
T Consensus        63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------~~~~~~~g~~  117 (388)
T 1w3b_A           63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL-------------------------AAALVAAGDM  117 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHSCS
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH-------------------------HHHHHHcCCH
Confidence            899999999999999999999999999999999999999888776                         9999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705          252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM  331 (557)
Q Consensus       252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (557)
                      ++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+..++..++.++...++++++...+++++.
T Consensus       118 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  197 (388)
T 1w3b_A          118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                      .+|..+.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus       198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  277 (388)
T 1w3b_A          198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL  277 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD  491 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  491 (557)
                      |.++...|++++|+..|+++++..|.++.++..+|.++..  .|++++|+..|+++++..|+++.++..+|.++...|++
T Consensus       278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  355 (388)
T 1w3b_A          278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE--QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705          492 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  531 (557)
                      ++|+..|+++++       ..|+.+.++..+|.++..+|+
T Consensus       356 ~~A~~~~~~a~~-------~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          356 QEALMHYKEAIR-------ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHh-------hCCCCHHHHHhHHHHHHHccC
Confidence            999999999998       799999999999999998874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-40  Score=346.45  Aligned_cols=445  Identities=17%  Similarity=0.124  Sum_probs=374.2

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS  168 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  168 (557)
                      ...+.+|.+|+..|++++|+.+|+++..  ..+......+. +....++.+++..+.......   .... .....+...
T Consensus       118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~---~~~~-~~~~~~~~~  192 (597)
T 2xpi_A          118 NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF-CLVKLYDWQGALNLLGETNPF---RKDE-KNANKLLMQ  192 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH-HHHHTTCHHHHHHHHCSSCTT---C-----------CC
T ss_pred             hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH-HHHHHhhHHHHHHHHhccCCc---cccc-ccccccccc
Confidence            4667899999999999999999998843  22222222222 223445666666654321100   0000 000011111


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH-----Hhhc------CCChhHHH
Q 008705          169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI-----LNSL------NLNNHWMK  237 (557)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~-----~~~l------~~~~~~~~  237 (557)
                      ....+.++.+++.+|.++.+.|++++|+..|+++++.+|.++.++..++.+......     ...+      .....+..
T Consensus       193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  272 (597)
T 2xpi_A          193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR  272 (597)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence            222355688999999999999999999999999999999999999988775431111     1111      00111111


Q ss_pred             --HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705          238 --DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA  315 (557)
Q Consensus       238 --~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  315 (557)
                        ...++..|...|++++|+..|+++++. |.+..++..+|.++...|++++|+..|+++++.+|.+...+..++.++..
T Consensus       273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  351 (597)
T 2xpi_A          273 SLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE  351 (597)
T ss_dssp             HHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence              122366778899999999999999887 78899999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHH
Q 008705          316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYR  395 (557)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  395 (557)
                      .++.+++..++..++...|.++.++..+|.+|...|++++|+.+|+++++.+|.+..+|..+|.++...|++++|++.|+
T Consensus       352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  431 (597)
T 2xpi_A          352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT  431 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----
Q 008705          396 RAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----  470 (557)
Q Consensus       396 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----  470 (557)
                      +++...|++..+|..+|.+|...|++++|+.+|+++++..|.++.+|..+|.++..  .|++++|+.+|+++++.     
T Consensus       432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~  509 (597)
T 2xpi_A          432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN--KSDMQTAINHFQNALLLVKKTQ  509 (597)
T ss_dssp             HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999  99999999999999988     


Q ss_pred             -CCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          471 -NDSE-AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       471 -~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                       +|.+ ..++..+|.++...|++++|+..|+++++       ..|+++.++..+|.+|...|++++|..+|+++++++|.
T Consensus       510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL-------LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence             6665 78999999999999999999999999999       57999999999999999999999999999999999876


Q ss_pred             ch
Q 008705          549 VS  550 (557)
Q Consensus       549 ~~  550 (557)
                      +.
T Consensus       583 ~~  584 (597)
T 2xpi_A          583 EI  584 (597)
T ss_dssp             CH
T ss_pred             Ch
Confidence            54

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=319.44  Aligned_cols=408  Identities=13%  Similarity=0.025  Sum_probs=324.0

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST  167 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  167 (557)
                      ....+.+|.+++..|+|++|+..|++++.  +.+......+..+. .                    .+++..+...+.+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~-~--------------------~g~~~~A~~~~~~   64 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYV-S--------------------VGDLKKVVEMSTK   64 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--------------------HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHH-H--------------------HhhHHHHHHHHHH
Confidence            36678889999999999999999998754  22221111111111 1                    1223333344455


Q ss_pred             hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705          168 SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE  247 (557)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~  247 (557)
                      ..+.+|.++.+++.+|.++...|++++|+..|++++..+|.+......+..                      .......
T Consensus        65 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~  122 (514)
T 2gw1_A           65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE----------------------RNLNKQA  122 (514)
T ss_dssp             HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH----------------------HHHHHHH
T ss_pred             HhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH----------------------HHHHHHH
Confidence            555566777777777777777777777777777777766655433322200                      0001111


Q ss_pred             HhhhHHHHHHHHHH----------------------------------Hhc--------CCCCHHHHHHHHHHHHh---c
Q 008705          248 LRMHKESLTKYEYL----------------------------------QGT--------FSFSNYIQAQIAKAQYS---L  282 (557)
Q Consensus       248 ~~~~~~A~~~~~~~----------------------------------l~~--------~p~~~~~~~~la~~~~~---~  282 (557)
                      .+...+++..++.+                                  ...        .|.+...+..+|.+++.   .
T Consensus       123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (514)
T 2gw1_A          123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP  202 (514)
T ss_dssp             HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred             HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence            11111111100000                                  000        13447788888988887   8


Q ss_pred             ccHHHHHHHHHHHHH-----h--C-------CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705          283 REFEQVEVIFEELLR-----N--D-------PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS  348 (557)
Q Consensus       283 g~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  348 (557)
                      |++++|+..|+++++     .  +       |.+...+..++.++...++++++...+.+++..+|. +.++..+|.++.
T Consensus       203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~  281 (514)
T 2gw1_A          203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA  281 (514)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHH
Confidence            999999999999999     5  4       344567788899999999999999999999999999 999999999999


Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF  428 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  428 (557)
                      ..|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|
T Consensus       282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  361 (514)
T 2gw1_A          282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF  361 (514)
T ss_dssp             TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHH---cCCHHHHHHHHH
Q 008705          429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI------ALNQLAKLHHA---LGRDEEAAFYYK  499 (557)
Q Consensus       429 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~  499 (557)
                      +++++..|.++.++..+|.++..  .|++++|+.+|++++...|.++.      ++..+|.++..   .|++++|+.+|+
T Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~  439 (514)
T 2gw1_A          362 SEAKRKFPEAPEVPNFFAEILTD--KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE  439 (514)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence            99999999999999999999999  99999999999999999888755      99999999999   999999999999


Q ss_pred             HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       500 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      ++++       ..|.++.++..+|.++...|++++|..+|+++++++|.+.
T Consensus       440 ~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          440 KASK-------LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             HHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             HHHH-------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            9999       6889999999999999999999999999999999986643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2.6e-36  Score=305.78  Aligned_cols=351  Identities=13%  Similarity=0.114  Sum_probs=320.8

Q ss_pred             HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHH
Q 008705          165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASA  244 (557)
Q Consensus       165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~  244 (557)
                      +......+|.++..++.+|..+...|++++|+..|+++++.+|.+..+|..+                         |.+
T Consensus        15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------~~~   69 (450)
T 2y4t_A           15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------ATV   69 (450)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHH
T ss_pred             ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------HHH
Confidence            4445566899999999999999999999999999999999999999888766                         999


Q ss_pred             HHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---CcHHHH------------
Q 008705          245 YQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV---DDMDMY------------  309 (557)
Q Consensus       245 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~------------  309 (557)
                      +...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++..+|.+.   ..+..+            
T Consensus        70 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  149 (450)
T 2y4t_A           70 FLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ  149 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999887   665554            


Q ss_pred             HHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH
Q 008705          310 SNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA  389 (557)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  389 (557)
                      +.++...++++++...+.+++...|.++.++..+|.+|...|++++|+..|+++++.+|.++.++..+|.++...|++++
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            55588899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHH------------HHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHh
Q 008705          390 AIDAYRRAVDINPRDYRAWYGL------------GQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQ  453 (557)
Q Consensus       390 A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~  453 (557)
                      |+..|++++..+|++...+..+            |.++...|++++|+.+|++++...|.++.    .+..+|.++..  
T Consensus       230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~--  307 (450)
T 2y4t_A          230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK--  307 (450)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH--
Confidence            9999999999999998888766            99999999999999999999999999854    78899999999  


Q ss_pred             cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH--------
Q 008705          454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH--------  525 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~--------  525 (557)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|+.+|+++++       ..|+++.++..++.+        
T Consensus       308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~  380 (450)
T 2y4t_A          308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-------HNENDQQIREGLEKAQRLLKQSQ  380 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999       789999999999954        


Q ss_pred             ----HHHcC-----CHHHHHHHHHH-HhccCCCc
Q 008705          526 ----CRAHG-----RFEEAEVYCTR-LLDYTGPV  549 (557)
Q Consensus       526 ----~~~~g-----~~~~A~~~~~~-al~~~~~~  549 (557)
                          |...|     +.+++.+.|++ +++..|+.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~  414 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN  414 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence                44455     66788999987 78777654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.5e-36  Score=313.69  Aligned_cols=425  Identities=11%  Similarity=0.056  Sum_probs=353.0

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS  168 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  168 (557)
                      .....+++.+...|+|++|+.+|++...  +........+..+. ..+..++                    +...+...
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~--------------------A~~~~~~~  143 (597)
T 2xpi_A           85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYC-CTGDYAR--------------------AKCLLTKE  143 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HTTCHHH--------------------HHHHHHHT
T ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHH-HcCcHHH--------------------HHHHHHHH
Confidence            3445679999999999999999998764  22211111111111 1223333                    33334443


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH
Q 008705          169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL  248 (557)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~  248 (557)
                      .. .+.++.+++.+|.++.+.|++++|+..|++.   .|.........     ... ......+......+.+|.+|...
T Consensus       144 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~l~~~~~~~  213 (597)
T 2xpi_A          144 DL-YNRSSACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNAN-----KLL-MQDGGIKLEASMCYLRGQVYTNL  213 (597)
T ss_dssp             CG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred             hc-cccchhHHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccc-----ccc-ccccccchhHHHHHHHHHHHHHc
Confidence            22 2678999999999999999999999999963   34431111000     000 00011233445556679999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCHHHHHHHHH--------------------------------------HHHhcccHHHHHH
Q 008705          249 RMHKESLTKYEYLQGTFSFSNYIQAQIAK--------------------------------------AQYSLREFEQVEV  290 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~--------------------------------------~~~~~g~~~~A~~  290 (557)
                      |++++|+..|+++++.+|++..++..++.                                      .+...|++++|+.
T Consensus       214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            99999999999999999999888776644                                      3446799999999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC
Q 008705          291 IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY  370 (557)
Q Consensus       291 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  370 (557)
                      .|+++++. |.+...+..++.++...++++++..++++++..+|.+..++..++.++...|++++|+..++++++..|.+
T Consensus       294 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  372 (597)
T 2xpi_A          294 YLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK  372 (597)
T ss_dssp             HHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence            99999987 67788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      ..++..+|.+|...|++++|+..|+++++.+|.+..+|..+|.+|...|++++|+..|+++++..|.+..++..+|.++.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch-HHHHHHHHHHHHHc
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM-VEALIFLATHCRAH  529 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~  529 (557)
                      .  .|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|+++++..+. .+..|+. ..++..+|.++.+.
T Consensus       453 ~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          453 Q--LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK-TQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             H--HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCSGGGHHHHHHHHHHHHHT
T ss_pred             H--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc-cccchhhHHHHHHHHHHHHHHh
Confidence            9  999999999999999999999999999999999999999999999999984332 1235664 88999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCch
Q 008705          530 GRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       530 g~~~~A~~~~~~al~~~~~~~  550 (557)
                      |++++|...|+++++.+|++.
T Consensus       530 g~~~~A~~~~~~~~~~~p~~~  550 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTNDA  550 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCH
T ss_pred             cCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999986543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.3e-36  Score=313.36  Aligned_cols=402  Identities=12%  Similarity=0.052  Sum_probs=301.7

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh---HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF---LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS  166 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  166 (557)
                      ....+.+|..++..|+|++|+..|++++...|..   +...+..+ ...                    +++..+...+.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~--------------------g~~~~A~~~~~   83 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY-IST--------------------GDLEKVIEFTT   83 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHH-HHH--------------------TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHc--------------------CCHHHHHHHHH
Confidence            4667888999999999999999988875422111   11111100 011                    11222233333


Q ss_pred             hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHH
Q 008705          167 TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQ  246 (557)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~  246 (557)
                      +....+|.++.+++.+|.++...|++++|+..|+ ++..+|.....+                            ...+.
T Consensus        84 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~----------------------------~~~~~  134 (537)
T 3fp2_A           84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS----------------------------IEPML  134 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------------------------------CHH
T ss_pred             HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH----------------------------HHHHH
Confidence            3444445555555555555555555555555553 555555444322                            12233


Q ss_pred             HHhhhHHHHHHHHHHHhcCCCCH-------------------------------------HHHHHHHHH--------HHh
Q 008705          247 ELRMHKESLTKYEYLQGTFSFSN-------------------------------------YIQAQIAKA--------QYS  281 (557)
Q Consensus       247 ~~~~~~~A~~~~~~~l~~~p~~~-------------------------------------~~~~~la~~--------~~~  281 (557)
                      ..+...+|+..+++++...|...                                     .....++..        ...
T Consensus       135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  214 (537)
T 3fp2_A          135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA  214 (537)
T ss_dssp             HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence            34444555555555554422111                                     012222222        223


Q ss_pred             cccHHHHHHHHHHHHHhCCCCCCc-------HHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchH
Q 008705          282 LREFEQVEVIFEELLRNDPYRVDD-------MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE  354 (557)
Q Consensus       282 ~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  354 (557)
                      .|++++|+..|+++++.+|.+...       +..++.++...++++++...+.+++..+|. +.++..+|.++...|+++
T Consensus       215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~  293 (537)
T 3fp2_A          215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ  293 (537)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence            468999999999999999998653       566677788889999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705          355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL  434 (557)
Q Consensus       355 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  434 (557)
                      +|+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.
T Consensus       294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  373 (537)
T 3fp2_A          294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK  373 (537)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHHc----------CCHHHHHHHH
Q 008705          435 QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI------ALNQLAKLHHAL----------GRDEEAAFYY  498 (557)
Q Consensus       435 ~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~~  498 (557)
                      .|+++.++..+|.++..  .|++++|+..|++++...|.+..      .+..+|.++...          |++++|+.+|
T Consensus       374 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~  451 (537)
T 3fp2_A          374 FPTLPEVPTFFAEILTD--RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL  451 (537)
T ss_dssp             CTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence            99999999999999999  99999999999999998775543      467778999999          9999999999


Q ss_pred             HHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          499 KKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       499 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      +++++       ..|+++.++..+|.++...|++++|..+|+++++++|....
T Consensus       452 ~~a~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          452 TKACE-------LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred             HHHHH-------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            99999       68999999999999999999999999999999999876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=6.9e-35  Score=285.54  Aligned_cols=322  Identities=14%  Similarity=0.111  Sum_probs=304.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      ++..++.+|.++...|++++|+..|+++++.+|.+..++..+                         |.++...|++++|
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------a~~~~~~~~~~~A   56 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------ATVFLAMGKSKAA   56 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH-------------------------HHHHHHccCHHHH
Confidence            467899999999999999999999999999999999888666                         9999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCCcHHHH------------HHHHHhccch
Q 008705          255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP---YRVDDMDMY------------SNVLYAKECF  319 (557)
Q Consensus       255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~------------~~~~~~~~~~  319 (557)
                      +..++++++..|+++.++..+|.++...|++++|+..|+++++.+|   .+...+..+            +.++...+++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           57 LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence            9999999999999999999999999999999999999999999999   877777666            6888899999


Q ss_pred             hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      +++...+.+++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++
T Consensus       137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCChHHHH------------HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHhcCcHHHHHHH
Q 008705          400 INPRDYRAWY------------GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       400 ~~p~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~~A~~~  463 (557)
                      .+|++..++.            .+|.++...|++++|+..|+++++..|+++.    ++..+|.++..  .|++++|+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~  294 (359)
T 3ieg_A          217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK--DEKPVEAIRI  294 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--ccCHHHHHHH
Confidence            9999988765            3488899999999999999999999999875    46679999999  9999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705          464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG  530 (557)
Q Consensus       464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  530 (557)
                      |++++..+|+++.++..+|.++...|++++|+.+|+++++       ..|+++.++..++.++...+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-------HNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999       78999999999998887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=4.7e-35  Score=296.50  Aligned_cols=369  Identities=15%  Similarity=0.147  Sum_probs=323.9

Q ss_pred             CccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHH
Q 008705           82 VMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISL  161 (557)
Q Consensus        82 ~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (557)
                      ....+|......+.+|.+++..|+|++|+.+|++++.                                           
T Consensus        18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-------------------------------------------   54 (450)
T 2y4t_A           18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD-------------------------------------------   54 (450)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------
T ss_pred             cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------
Confidence            3445566678888999999999999999998887521                                           


Q ss_pred             HHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHH
Q 008705          162 ERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFL  241 (557)
Q Consensus       162 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~l  241 (557)
                               ..|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+                         
T Consensus        55 ---------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------  100 (450)
T 2y4t_A           55 ---------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR-------------------------  100 (450)
T ss_dssp             ---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred             ---------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH-------------------------
Confidence                     1477889999999999999999999999999999999998888666                         


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHhcccHHHHHHHHHHHHHhCCCCCCcH
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSFSN---YIQAQI------------AKAQYSLREFEQVEVIFEELLRNDPYRVDDM  306 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  306 (557)
                      |.++...|++++|+..|++++...|++.   .++..+            |.++...|++++|+..|++++...|.+...+
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  180 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR  180 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999887   666555            6679999999999999999999999999999


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH---------
Q 008705          307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM---------  377 (557)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------  377 (557)
                      ..++.++...++++++...+.+++..+|.++.++..+|.+|...|++++|+..|++++..+|++...+..+         
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  260 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  260 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999887766         


Q ss_pred             ---hHHHHhcCCchHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          378 ---GHEYVEMKNTPAAIDAYRRAVDINPRDY----RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       378 ---~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                         |.++...|++++|+..|++++...|.++    ..+..+|.++...|++++|+..+++++...|+++.+|..+|.++.
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence               9999999999999999999999999984    478999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHHHHHhhhcCC
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL------------HHALG-----RDEEAAFYYKK-DLERMEAEEREG  512 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~~~~~~~~  512 (557)
                      .  .|++++|+..|+++++++|+++.++..++.+            |...|     +.+++.+.|++ +++       ..
T Consensus       341 ~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-------~~  411 (450)
T 2y4t_A          341 I--EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-------WH  411 (450)
T ss_dssp             H--TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-------SC
T ss_pred             H--hcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-------hC
Confidence            9  9999999999999999999999999999955            44445     56778888887 555       33


Q ss_pred             cch----------HHHHHHHHHHHHHcCCHHHHH
Q 008705          513 PNM----------VEALIFLATHCRAHGRFEEAE  536 (557)
Q Consensus       513 ~~~----------~~~~~~la~~~~~~g~~~~A~  536 (557)
                      |+.          ...+..++..|..+|+.+++.
T Consensus       412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            332          335666777777777766544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=298.71  Aligned_cols=340  Identities=13%  Similarity=0.054  Sum_probs=310.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      .+..++.+|..+...|++++|+..|++++..+| +..+|..+                         |.++...|++++|
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l-------------------------a~~~~~~g~~~~A   58 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNL-------------------------SACYVSVGDLKKV   58 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhH-------------------------HHHHHHHhhHHHH
Confidence            457899999999999999999999999999999 57666555                         9999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------------------------------
Q 008705          255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD------------------------------  304 (557)
Q Consensus       255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------------------  304 (557)
                      +..++++++.+|+++.++..+|.++...|++++|+..|++++...|.+..                              
T Consensus        59 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  138 (514)
T 2gw1_A           59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA  138 (514)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999874422                              


Q ss_pred             -------------------------------------------------cHHHHHHHHHh---ccchhHHHHHHHHHHh-
Q 008705          305 -------------------------------------------------DMDMYSNVLYA---KECFSALSYLAHRVFM-  331 (557)
Q Consensus       305 -------------------------------------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~-  331 (557)
                                                                       .+...+.+...   .++++.+...+.+++. 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  218 (514)
T 2gw1_A          139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL  218 (514)
T ss_dssp             ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence                                                             22333444444   7889999999999888 


Q ss_pred             ----h--C-------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          332 ----T--D-------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       332 ----~--~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                          .  .       |..+.++..+|.++...|++++|+.+|+++++.+|. ..++..+|.++...|++++|+..+++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                5  3       556788999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705          399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL  478 (557)
Q Consensus       399 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  478 (557)
                      ..+|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|.++..  .|++++|+..+++++...|.++.++
T Consensus       298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~  375 (514)
T 2gw1_A          298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR--ENKFDDCETLFSEAKRKFPEAPEVP  375 (514)
T ss_dssp             TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT--TTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred             hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch------HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCc
Q 008705          479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM------VEALIFLATHCRA---HGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~  549 (557)
                      ..+|.++...|++++|+.+|+++++.       .|.+      ..++..+|.++..   .|++++|..+|+++++.+|.+
T Consensus       376 ~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          376 NFFAEILTDKNDFDKALKQYDLAIEL-------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-------HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-------hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999983       3444      4489999999999   999999999999999998654


Q ss_pred             h
Q 008705          550 S  550 (557)
Q Consensus       550 ~  550 (557)
                      .
T Consensus       449 ~  449 (514)
T 2gw1_A          449 E  449 (514)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=2.1e-33  Score=274.97  Aligned_cols=305  Identities=11%  Similarity=0.026  Sum_probs=289.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE  317 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  317 (557)
                      .+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...+
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            35569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhhCC---CChhHHHHH------------HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHH
Q 008705          318 CFSALSYLAHRVFMTDK---YRPESCCII------------GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV  382 (557)
Q Consensus       318 ~~~~~~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  382 (557)
                      +++++...+.+++..+|   .++.++..+            |.++...|++++|+.+|+++++.+|.++.++..+|.++.
T Consensus        86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI  165 (359)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999   888888877            789999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHh
Q 008705          383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI------------AMAQCYE  450 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------------~l~~~~~  450 (557)
                      ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|+++.++.            .+|.++.
T Consensus       166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  245 (359)
T 3ieg_A          166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI  245 (359)
T ss_dssp             HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988665            3488899


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAI----ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC  526 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  526 (557)
                      .  .|++++|+..+++++...|+++.    ++..+|.++...|++++|+.+|+++++       ..|+++.++..+|.++
T Consensus       246 ~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          246 R--DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ-------MEPDNVNALKDRAEAY  316 (359)
T ss_dssp             H--TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHH
T ss_pred             H--cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCcccHHHHHHHHHHH
Confidence            9  99999999999999999999874    467799999999999999999999999       6899999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCchh
Q 008705          527 RAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       527 ~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ...|++++|..+|+++++++|.+..
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~  341 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQ  341 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChH
Confidence            9999999999999999999876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.6e-33  Score=291.99  Aligned_cols=346  Identities=16%  Similarity=0.117  Sum_probs=300.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      .+..++.+|..+...|++++|+..|+++++.+|.+..+|..+                         |.++...|++++|
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~g~~~~A   78 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI-------------------------SACYISTGDLEKV   78 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHH-------------------------HHHHHHcCCHHHH
Confidence            467899999999999999999999999999999999888766                         9999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcH----------------------------
Q 008705          255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM----------------------------  306 (557)
Q Consensus       255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------------------  306 (557)
                      +..|+++++.+|+++.++..+|.++...|++++|+..|+ ++...|......                            
T Consensus        79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~  157 (537)
T 3fp2_A           79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG  157 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            999999999999999999999999999999999999995 777666544321                            


Q ss_pred             ----------------------------------------HHHH--------HHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705          307 ----------------------------------------DMYS--------NVLYAKECFSALSYLAHRVFMTDKYRPE  338 (557)
Q Consensus       307 ----------------------------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (557)
                                                              ..+.        ......+++.++...+++++..+|.++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~  237 (537)
T 3fp2_A          158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP  237 (537)
T ss_dssp             -CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH
T ss_pred             ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch
Confidence                                                    1111        1111224778889999999999999866


Q ss_pred             -------HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          339 -------SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       339 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                             ++..+|.++...|++++|+.+|+++++.+|. ..++..+|.++...|++++|+..|++++..+|+++.++..+
T Consensus       238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  316 (537)
T 3fp2_A          238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR  316 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence                   4777889999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD  491 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  491 (557)
                      |.++...|++++|+..|+++++.+|.++.++..+|.++..  .|++++|+.+|++++...|.++.++..+|.++...|++
T Consensus       317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (537)
T 3fp2_A          317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK--QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF  394 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            9999999999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCch
Q 008705          492 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH----------GRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~  550 (557)
                      ++|+.+|+++++..+.. .........+..+|.++...          |++++|+.+|+++++.+|.+.
T Consensus       395 ~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~  462 (537)
T 3fp2_A          395 DTAIKQYDIAKRLEEVQ-EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE  462 (537)
T ss_dssp             HHHHHHHHHHHHHHHHC-SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence            99999999999853321 11222344567788999999          999999999999999987554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.6e-33  Score=269.37  Aligned_cols=297  Identities=13%  Similarity=0.060  Sum_probs=263.9

Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH
Q 008705          169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL  248 (557)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~  248 (557)
                      ....+.++..++.+|..+...|++++|+..|+++++.+|.+..++..+                         +.++...
T Consensus        15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------~~~~~~~   69 (330)
T 3hym_B           15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH-------------------------IGTLVEL   69 (330)
T ss_dssp             -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHH-------------------------HHHHHHH
T ss_pred             HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH-------------------------HHHHHHh
Confidence            344578889999999999999999999999999999999998777555                         8889999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHH
Q 008705          249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR-EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAH  327 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (557)
                      |++++|+..++++++.+|.++.++..+|.++...| ++++|+..|++++..+|.                          
T Consensus        70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------------  123 (330)
T 3hym_B           70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT--------------------------  123 (330)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT--------------------------
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc--------------------------
Confidence            99999999999999999999999999999999999 999999999999998886                          


Q ss_pred             HHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705          328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA  407 (557)
Q Consensus       328 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  407 (557)
                              .+.++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..+++++..+|.+..+
T Consensus       124 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  195 (330)
T 3hym_B          124 --------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV  195 (330)
T ss_dssp             --------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             --------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHH
Confidence                    456677888889999999999999999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQ---------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL  478 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  478 (557)
                      +..+|.++...|++++|+.++++++...         |..+.++..+|.++..  .|++++|+.+|++++...|+++.++
T Consensus       196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~  273 (330)
T 3hym_B          196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK--LKKYAEALDYHRQALVLIPQNASTY  273 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhCccchHHH
Confidence            9999999999999999999999998875         6667889999999998  9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHcCCHH
Q 008705          479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC-RAHGRFE  533 (557)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  533 (557)
                      ..+|.++...|++++|+.+|+++++       ..|+++.++..++.++ ...|+.+
T Consensus       274 ~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          274 SAIGYIHSLMGNFENAVDYFHTALG-------LRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTTT-------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHc-------cCCCchHHHHHHHHHHHHHhCchh
Confidence            9999999999999999999999988       7888999999999988 4566544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.2e-33  Score=281.85  Aligned_cols=349  Identities=12%  Similarity=0.045  Sum_probs=280.9

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcc---------CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNS---------YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLAS  243 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~  243 (557)
                      +..+..+..+|.++...|++++|++.|++++++         +|....+|.                         .+|.
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~-------------------------nla~  102 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG-------------------------NYAW  102 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHH-------------------------HHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHH-------------------------HHHH
Confidence            444678889999999999999999999999875         344444443                         4599


Q ss_pred             HHHHHhhhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          244 AYQELRMHKESLTKYEYLQGT--------FSFSNYIQAQIAKAQYSL--REFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       244 ~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                      +|..+|++++|+..+++++++        .+..+.++..+|.++...  +++++|+.+|+++++.+|++++++..++.++
T Consensus       103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~  182 (472)
T 4g1t_A          103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS  182 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999875        335678888888776654  5799999999999999999999998888886


Q ss_pred             Hh---ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC
Q 008705          314 YA---KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN  386 (557)
Q Consensus       314 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  386 (557)
                      ..   .++..++...+++++..+|.++.++..+|..+..    .|++++|+.++++++..+|....++..+|.+|...|+
T Consensus       183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~  262 (472)
T 4g1t_A          183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE  262 (472)
T ss_dssp             HHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence            55   4566778888999999999999999888876654    4678899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-------------------CChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705          387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM-------------------HMPLYALHYFRKSVFLQPNDSRLWIAMAQ  447 (557)
Q Consensus       387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  447 (557)
                      +++|+..|+++++.+|++..++..+|.+|...                   +.+++|+..|++++..+|.+..++..+|.
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~  342 (472)
T 4g1t_A          263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS  342 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHH
Confidence            99999999999999999999999999988643                   34678999999999999999999999999


Q ss_pred             HHhHHhcCcHHHHHHHHHHHHhcCCChHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHHH-----------------H
Q 008705          448 CYETEQLHMLEEAIKCYRRAANCNDSEAI---ALNQLAKL-HHALGRDEEAAFYYKKDLERM-----------------E  506 (557)
Q Consensus       448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~-----------------~  506 (557)
                      ++..  .|++++|+.+|++++.+.|++..   ++..+|.+ +...|++++|+.+|+++++..                 .
T Consensus       343 ~~~~--~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~  420 (472)
T 4g1t_A          343 LHAL--ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK  420 (472)
T ss_dssp             HHHH--TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHH--hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence            9999  99999999999999999887644   46667765 457899999999999998621                 1


Q ss_pred             hhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          507 AEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       507 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      .....+|.++.++..+|.+|...|++++|+++|+++++++|.
T Consensus       421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~  462 (472)
T 4g1t_A          421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL  462 (472)
T ss_dssp             HHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            112346788899999999999999999999999999998754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=259.70  Aligned_cols=283  Identities=19%  Similarity=0.234  Sum_probs=261.3

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705          259 EYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE  338 (557)
Q Consensus       259 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (557)
                      ...+...|+++.++..+|..++..|++++|+..|+++++.+|.+...+..++.++...++++++...+.+++..+|.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   91 (330)
T 3hym_B           12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV   91 (330)
T ss_dssp             --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH
Confidence            34455567777888889999999999999999999999999998888888888888899999999999999999999999


Q ss_pred             HHHHHHHHHhhhC-chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          339 SCCIIGNYYSLKG-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       339 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      +++.+|.++...| ++++|+.+|+++++.+|.+..+|..+|.++...|++++|+..|++++...|.+..++..+|.++..
T Consensus        92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  171 (330)
T 3hym_B           92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL  171 (330)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHc
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN---------DSEAIALNQLAKLHHAL  488 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~  488 (557)
                      .|++++|+.+|+++++..|.++.++..+|.++..  .|++++|+.++++++...         |..+.++..+|.++...
T Consensus       172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  249 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ--NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL  249 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999  999999999999999975         66678999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      |++++|+.+|+++++       ..|.++.++..+|.++...|++++|..+|+++++++|.+.
T Consensus       250 g~~~~A~~~~~~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          250 KKYAEALDYHRQALV-------LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             TCHHHHHHHHHHHHH-------HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             cCHHHHHHHHHHHHh-------hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            999999999999999       5788999999999999999999999999999999987654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=272.36  Aligned_cols=365  Identities=14%  Similarity=0.028  Sum_probs=274.8

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK  170 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  170 (557)
                      .....||.+++..|+|++|+..|++++.....                     .                      ....
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~---------------------~----------------------~~~~   88 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQ---------------------E----------------------HADQ   88 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------H----------------------SGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------------c----------------------Cccc
Confidence            34557899999999999999998886321000                     0                      0011


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH--
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL--  248 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~--  248 (557)
                      .+|.....+..+|.+|...|++++|+.+|++++++.+.....                 ..+........+|.++...  
T Consensus        89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~  151 (472)
T 4g1t_A           89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP-----------------YRIESPELDCEEGWTRLKCGG  151 (472)
T ss_dssp             CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS-----------------SCCCCHHHHHHHHHHHHHHCT
T ss_pred             cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc-----------------cchhhHHHHHHHHHHHHHHcc
Confidence            346677889999999999999999999999998764321100                 0001111122336555554  


Q ss_pred             hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh----ccchhH
Q 008705          249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL---REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA----KECFSA  321 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~  321 (557)
                      +++++|+..|+++++++|+++.++..++.+++..   ++.++|+..|+++++++|.+..++..++..+..    .++.++
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            5799999999999999999999999999886654   666889999999999999998888777765544    467788


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-----------------
Q 008705          322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-----------------  384 (557)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------------  384 (557)
                      +...+++++..+|..+.++..+|.+|...|++++|+..|+++++.+|++..++..+|.+|...                 
T Consensus       232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~  311 (472)
T 4g1t_A          232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK  311 (472)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988643                 


Q ss_pred             --CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHH---HHHHHHHHH-hHHhcCcHH
Q 008705          385 --KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR---LWIAMAQCY-ETEQLHMLE  458 (557)
Q Consensus       385 --~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~~-~~~~~~~~~  458 (557)
                        +.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++.+.|++..   ++..+|.+. ..  .|+++
T Consensus       312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  389 (472)
T 4g1t_A          312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ--MKCED  389 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT--SSCHH
T ss_pred             HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--CCCHH
Confidence              34678999999999999999999999999999999999999999999999887644   456677654 45  89999


Q ss_pred             HHHHHHHHHHhcC------------------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc
Q 008705          459 EAIKCYRRAANCN------------------------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN  514 (557)
Q Consensus       459 ~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (557)
                      +|+..|++++.+.                        |+++.++..+|.+|...|++++|+++|+++++       ..|.
T Consensus       390 ~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe-------~~~~  462 (472)
T 4g1t_A          390 KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE-------SGSL  462 (472)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCC
Confidence            9999999998764                        55667899999999999999999999999999       6788


Q ss_pred             hHHHHHHHHH
Q 008705          515 MVEALIFLAT  524 (557)
Q Consensus       515 ~~~~~~~la~  524 (557)
                      .|.+..++|.
T Consensus       463 ~p~a~~~~G~  472 (472)
T 4g1t_A          463 IPSASSWNGE  472 (472)
T ss_dssp             ----------
T ss_pred             CCcHhhcCCC
Confidence            8888887773

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=6.7e-32  Score=265.61  Aligned_cols=299  Identities=15%  Similarity=0.125  Sum_probs=261.9

Q ss_pred             HHHHHhhhHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          244 AYQELRMHKESLT-KYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       244 ~~~~~~~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      ++...|++++|+. .|++++...|.++    ..++.+|.++...|++++|+..|+++++.+|.+..++..++.++...++
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            5666789999998 9999988887764    4588999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHH----------------HHhHHHH
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT----------------LMGHEYV  382 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~  382 (557)
                      ++++...+.+++..+|.++.++..+|.++...|++++|+..|++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            999999999999999999999999999999999999999999999999999877665                466666 


Q ss_pred             hcCCchHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHH
Q 008705          383 EMKNTPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA  460 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A  460 (557)
                      ..|++++|+..|++++..+|.  +..++..+|.++...|++++|+.+|++++...|+++.++..+|.++..  .|++++|
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A  270 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN--GNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--cCCHHHH
Confidence            999999999999999999999  899999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705          461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE----REGPNMVEALIFLATHCRAHGRFEEAE  536 (557)
Q Consensus       461 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~  536 (557)
                      +.+|++++...|.++.++..+|.++...|++++|+.+|+++++..+...    ...+....++..+|.++...|++++|.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999999999999999999999999999999999999999999432210    112333899999999999999999999


Q ss_pred             HHHHHHhcc
Q 008705          537 VYCTRLLDY  545 (557)
Q Consensus       537 ~~~~~al~~  545 (557)
                      .+++++++.
T Consensus       351 ~~~~~~l~~  359 (368)
T 1fch_A          351 AADARDLST  359 (368)
T ss_dssp             HHHTTCHHH
T ss_pred             HhHHHHHHH
Confidence            999887764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=2.3e-31  Score=261.79  Aligned_cols=308  Identities=16%  Similarity=0.127  Sum_probs=254.8

Q ss_pred             hchhHHHHHH-HHhhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh
Q 008705          154 VNRELISLER-ELSTSWKNGTVD----PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS  228 (557)
Q Consensus       154 ~~~~l~~~~~-~l~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~  228 (557)
                      ..+++..+.. .+.+.....|.+    ...++.+|.++...|++++|+..|+++++.+|.+..++..+            
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------  104 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL------------  104 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH------------
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------
Confidence            3345555555 555555555555    45688899999999999999999999999999888877665            


Q ss_pred             cCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH
Q 008705          229 LNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM  308 (557)
Q Consensus       229 l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  308 (557)
                                   |.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++...|.+...+..
T Consensus       105 -------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  171 (368)
T 1fch_A          105 -------------GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  171 (368)
T ss_dssp             -------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             -------------HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence                         8888899999999999999999999999999999999999999999999999999988887655433


Q ss_pred             HHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--CHHHHHHHhHHHHhcCC
Q 008705          309 YSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--YLSAWTLMGHEYVEMKN  386 (557)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~  386 (557)
                      ......                  .......+..++.++ ..|++++|+.+|+++++.+|.  ...++..+|.++...|+
T Consensus       172 ~~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~  232 (368)
T 1fch_A          172 AEEGAG------------------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE  232 (368)
T ss_dssp             --------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhh------------------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence            322100                  000112223466666 899999999999999999999  89999999999999999


Q ss_pred             chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705          387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR  466 (557)
Q Consensus       387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~  466 (557)
                      +++|+..|++++..+|+++.++..+|.++...|++++|+..|++++++.|+++.++..+|.++..  .|++++|+..|++
T Consensus       233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~  310 (368)
T 1fch_A          233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN--LGAHREAVEHFLE  310 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             HHhcCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705          467 AANCNDSE-----------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA  507 (557)
Q Consensus       467 al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (557)
                      ++.+.|++           ..++..+|.++..+|++++|..+++++++.+.+
T Consensus       311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  362 (368)
T 1fch_A          311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT  362 (368)
T ss_dssp             HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred             HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence            99998887           889999999999999999999999988875443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=1.5e-31  Score=262.84  Aligned_cols=279  Identities=14%  Similarity=0.088  Sum_probs=245.6

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      .+...++.+|..+...|++++|+..|+++++.+|.+..+|..+                         |.++...|++++
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------g~~~~~~g~~~~  117 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL-------------------------GITQAENENEQA  117 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHH-------------------------HHHHHHCCCHHH
Confidence            4556699999999999999999999999999999999888766                         999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705          254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD  333 (557)
Q Consensus       254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (557)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|.+...+..++                       
T Consensus       118 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----------------------  174 (365)
T 4eqf_A          118 AIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-----------------------  174 (365)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-----------------------
Confidence            999999999999999999999999999999999999999999999987655443321                       


Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                       ..+..+..+|.++...|++++|+.+|+++++.+|.  ++.++..+|.++...|++++|+..|+++++.+|++..+|..+
T Consensus       175 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  253 (365)
T 4eqf_A          175 -GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL  253 (365)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence             12345566899999999999999999999999999  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------------hHHHHH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALN  479 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~  479 (557)
                      |.++...|++++|+.+|+++++++|+++.++..+|.++..  .|++++|+.+|++++.+.|+            ...++.
T Consensus       254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  331 (365)
T 4eqf_A          254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN--LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA  331 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence            9999999999999999999999999999999999999999  99999999999999998876            367899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          480 QLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      .++.++..+|+.+.|....++.+.
T Consensus       332 ~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          332 ALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHcCcHHHHHHHHHhhHH
Confidence            999999999999999888777555

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=1.2e-30  Score=256.57  Aligned_cols=271  Identities=14%  Similarity=0.048  Sum_probs=238.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      +.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|.                 
T Consensus        69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------------  131 (365)
T 4eqf_A           69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-----------------  131 (365)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------------
Confidence            445999999999999999999999999999999999999999999999999999999998876                 


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH----------hHHHHhcCCch
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM----------GHEYVEMKNTP  388 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~  388 (557)
                                       ++.++..+|.+|...|++++|+.+|+++++++|++..++..+          |.++...|+++
T Consensus       132 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  194 (365)
T 4eqf_A          132 -----------------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE  194 (365)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred             -----------------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence                             467788899999999999999999999999999876666554          99999999999


Q ss_pred             HHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705          389 AAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR  466 (557)
Q Consensus       389 ~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~  466 (557)
                      +|+..|++++..+|.  ++.++..+|.++...|++++|+.+|+++++..|+++.+|..+|.++..  .|++++|+.+|++
T Consensus       195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~  272 (365)
T 4eqf_A          195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN--GDRSEEAVEAYTR  272 (365)
T ss_dssp             HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence            999999999999999  899999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE-----GPNMVEALIFLATHCRAHGRFEEAEVYCTR  541 (557)
Q Consensus       467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  541 (557)
                      ++...|+++.++..+|.++...|++++|+.+|+++++..+.....     ......++..++.++..+|+.+.|.....+
T Consensus       273 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          273 ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999999999999999999999999999999954331111     011467899999999999999999888777


Q ss_pred             Hhcc
Q 008705          542 LLDY  545 (557)
Q Consensus       542 al~~  545 (557)
                      .+..
T Consensus       353 ~l~~  356 (365)
T 4eqf_A          353 DLDV  356 (365)
T ss_dssp             CCGG
T ss_pred             hHHH
Confidence            5443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=1.2e-29  Score=244.97  Aligned_cols=286  Identities=16%  Similarity=0.161  Sum_probs=254.5

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      .++..++.+|..+...|++++|+..|+++++.+|.+..+|..+                         |.++...|++++
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------------------------~~~~~~~~~~~~   73 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL-------------------------GLTQAENEKDGL   73 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHHHHHcCCHHH
Confidence            3556789999999999999999999999999999999888666                         999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705          254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD  333 (557)
Q Consensus       254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (557)
                      |+..++++++.+|.+..++..+|.++...|++++|+..|++++...|.+...+..+....                    
T Consensus        74 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  133 (327)
T 3cv0_A           74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD--------------------  133 (327)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------------------
T ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------
Confidence            999999999999999999999999999999999999999999999998766554432110                    


Q ss_pred             CCChhHHHHH-HH-HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          334 KYRPESCCII-GN-YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       334 ~~~~~~~~~l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                      +.. .....+ +. ++...|++++|+.+++++++.+|.+..++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus       134 ~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  212 (327)
T 3cv0_A          134 VDI-DDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL  212 (327)
T ss_dssp             -------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHH-HHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            001 111134 44 588899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------------hHHHHH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALN  479 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~  479 (557)
                      |.++...|++++|+..|+++++..|.++.++..+|.++..  .|++++|+..|++++...|.            ++.++.
T Consensus       213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  290 (327)
T 3cv0_A          213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN--MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD  290 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH
Confidence            9999999999999999999999999999999999999999  99999999999999999999            899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705          480 QLAKLHHALGRDEEAAFYYKKDLERMEA  507 (557)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (557)
                      .+|.++...|++++|...++++++....
T Consensus       291 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          291 FFRMLLNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence            9999999999999999999998885443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.97  E-value=1.1e-27  Score=244.82  Aligned_cols=353  Identities=15%  Similarity=0.121  Sum_probs=269.3

Q ss_pred             chhhHHHHHHHhhh----hhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHH
Q 008705           89 EDSDFYLLAKSYFD----CREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERE  164 (557)
Q Consensus        89 ~~~~~~~la~~~~~----~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (557)
                      .....+.+|.+|+.    .+++++|+..|+++..                                              
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----------------------------------------------   71 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----------------------------------------------   71 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------------------------------
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----------------------------------------------
Confidence            34778888999988    8889988887776522                                              


Q ss_pred             HhhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHH
Q 008705          165 LSTSWKNGTVDPFGLYLYGIVLKD----KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF  240 (557)
Q Consensus       165 l~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~  240 (557)
                              ..++.+++.+|.++..    .+++++|+.+|+++.+.  .+..++..|                        
T Consensus        72 --------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L------------------------  117 (490)
T 2xm6_A           72 --------QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNL------------------------  117 (490)
T ss_dssp             --------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH------------------------
T ss_pred             --------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH------------------------
Confidence                    1345566666666666    66777777777776653  344444433                        


Q ss_pred             HHHHHHH----HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 008705          241 LASAYQE----LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDPYRVDDMDMYSNV  312 (557)
Q Consensus       241 la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  312 (557)
                       |.+|..    .+++++|+..|+++.+.  .++.++..+|.+|..    .+++++|+.+|+++++.  .+..++..++.+
T Consensus       118 -g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~  192 (490)
T 2xm6_A          118 -GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM  192 (490)
T ss_dssp             -HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             -HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence             666665    56666777777766543  456666667766665    56677777777776664  345566666666


Q ss_pred             HHh----ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-
Q 008705          313 LYA----KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE-  383 (557)
Q Consensus       313 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-  383 (557)
                      +..    .++.+++..+++++...  .++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.++.. 
T Consensus       193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g  268 (490)
T 2xm6_A          193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG  268 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC
Confidence            665    56666666666666554  357788888988886    78899999999998875  567888899999988 


Q ss_pred             ---cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705          384 ---MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM-----HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       384 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  455 (557)
                         .+++++|+..|+++.+.  .++.+++.+|.+|...     +++++|+.+|+++++.  .++.+++.+|.+|..  .|
T Consensus       269 ~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~--~g  342 (490)
T 2xm6_A          269 LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR--LG  342 (490)
T ss_dssp             TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--SC
T ss_pred             CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh--CC
Confidence               88999999999998765  5678889999999887     8999999999998876  467888999999987  66


Q ss_pred             ---cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705          456 ---MLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA  528 (557)
Q Consensus       456 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  528 (557)
                         ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++       .  .++.+++.+|.+|..
T Consensus       343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-------~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-------Q--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------T--TCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-------C--CCHHHHHHHHHHHHc
Confidence               788999999999886  568889999999998    8899999999999887       2  357888999999998


Q ss_pred             ----cCCHHHHHHHHHHHhccCC
Q 008705          529 ----HGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       529 ----~g~~~~A~~~~~~al~~~~  547 (557)
                          .+++++|..+|+++++.+|
T Consensus       412 g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          412 GLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCC
Confidence                8999999999999998874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=1.4e-29  Score=247.04  Aligned_cols=260  Identities=8%  Similarity=0.009  Sum_probs=241.4

Q ss_pred             HHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008705          201 ESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQY  280 (557)
Q Consensus       201 ~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  280 (557)
                      .++..+|.+..+|..+                         |.++...|++++|+..|++++.++|++..+|..+|.++.
T Consensus        88 ~ai~~~p~~~~a~~~l-------------------------g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~  142 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYF-------------------------RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK  142 (382)
T ss_dssp             SEECCCHHHHHHHHHH-------------------------HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhhCChhhHHHHHHH-------------------------HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH
Confidence            4677788888777655                         999999999999999999999999999999999999999


Q ss_pred             hccc-HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHH
Q 008705          281 SLRE-FEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVY  359 (557)
Q Consensus       281 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  359 (557)
                      ..|+ +++|+..|++++.++|.                                  ++.+|..+|.++...|++++|+.+
T Consensus       143 ~~g~d~~eAl~~~~~al~l~P~----------------------------------~~~a~~~~g~~~~~~g~~~eAl~~  188 (382)
T 2h6f_A          143 SLQKDLHEEMNYITAIIEEQPK----------------------------------NYQVWHHRRVLVEWLRDPSQELEF  188 (382)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             HcccCHHHHHHHHHHHHHHCCC----------------------------------CHHHHHHHHHHHHHccCHHHHHHH
Confidence            9997 99999999999999887                                  567888999999999999999999


Q ss_pred             HHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCChHHH-----HHHHHHHHh
Q 008705          360 FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM-MHMPLYA-----LHYFRKSVF  433 (557)
Q Consensus       360 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~a~~  433 (557)
                      |+++++++|++..+|+.+|.++..+|++++|+..|+++++++|++..+|+.+|.++.. .|.+++|     +.+|++++.
T Consensus       189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~  268 (382)
T 2h6f_A          189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK  268 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999 5555888     599999999


Q ss_pred             cCCCCHHHHHHHHHHHhHHhcC--cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-
Q 008705          434 LQPNDSRLWIAMAQCYETEQLH--MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG---------RDEEAAFYYKKD-  501 (557)
Q Consensus       434 ~~p~~~~~~~~l~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-  501 (557)
                      ++|++..+|+.+|.++..  .|  ++++|+..++++ +.+|+++.++..+|.+|..+|         .+++|+.+|+++ 
T Consensus       269 l~P~~~~a~~~l~~ll~~--~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~  345 (382)
T 2h6f_A          269 LVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA  345 (382)
T ss_dssp             HSTTCHHHHHHHHHHHTT--TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHc--cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence            999999999999999998  88  699999999998 999999999999999999985         258999999998 


Q ss_pred             HHHHHhhhcCCcchHHHHHHHHHHHHHc
Q 008705          502 LERMEAEEREGPNMVEALIFLATHCRAH  529 (557)
Q Consensus       502 l~~~~~~~~~~~~~~~~~~~la~~~~~~  529 (557)
                      ++       .+|.....|..++..+..+
T Consensus       346 ~~-------~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          346 KE-------KDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HT-------TCGGGHHHHHHHHHHHHHH
T ss_pred             HH-------hCchhHHHHHHHHHHHHHH
Confidence            77       7999999999999887754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=2.4e-29  Score=245.42  Aligned_cols=257  Identities=11%  Similarity=0.033  Sum_probs=240.4

Q ss_pred             cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh
Q 008705          170 KNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR  249 (557)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~  249 (557)
                      ..+|.++.+++.+|.++...|++++|+..|+++++++|.+..+|..+                         |.++...|
T Consensus        91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~-------------------------g~~l~~~g  145 (382)
T 2h6f_A           91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFR-------------------------RVLLKSLQ  145 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTT
T ss_pred             hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHH-------------------------HHHHHHcc
Confidence            45678889999999999999999999999999999999999999766                         99999999


Q ss_pred             h-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHH
Q 008705          250 M-HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHR  328 (557)
Q Consensus       250 ~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (557)
                      + +++|+..|++++.++|++..+|..+|.++...|++++|+..|+++++++|.                           
T Consensus       146 ~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~---------------------------  198 (382)
T 2h6f_A          146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---------------------------  198 (382)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------------------------
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---------------------------
Confidence            7 999999999999999999999999999999999999999999999999887                           


Q ss_pred             HHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-cCCchHH-----HHHHHHHHhhCC
Q 008705          329 VFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE-MKNTPAA-----IDAYRRAVDINP  402 (557)
Q Consensus       329 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~al~~~p  402 (557)
                             ++.+|+.+|.++...|++++|+.+|+++++++|++..+|+.+|.++.. .|.+++|     +.+|++++.++|
T Consensus       199 -------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P  271 (382)
T 2h6f_A          199 -------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP  271 (382)
T ss_dssp             -------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred             -------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence                   567888899999999999999999999999999999999999999999 5665888     599999999999


Q ss_pred             CChHHHHHHHHHHHHhC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC---------cHHHHHHHHHHH-Hhc
Q 008705          403 RDYRAWYGLGQAYEMMH--MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---------MLEEAIKCYRRA-ANC  470 (557)
Q Consensus       403 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---------~~~~A~~~~~~a-l~~  470 (557)
                      ++..+|+.+|.++...|  ++++|+..++++ +.+|+++.++..+|.+|..  +|         .+++|+.+|+++ +++
T Consensus       272 ~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~--~~~~~~~~~~~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          272 HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED--MLENQCDNKEDILNKALELCEILAKEK  348 (382)
T ss_dssp             TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH--HHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH--HhcccccchHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988  699999999998 9999999999999999998  74         359999999999 999


Q ss_pred             CCChHHHHHHHHHHHHHc
Q 008705          471 NDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       471 ~p~~~~~~~~la~~~~~~  488 (557)
                      +|.....|..++..+..+
T Consensus       349 DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          349 DTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             CGGGHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHH
Confidence            999999999999887654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=1.9e-29  Score=243.61  Aligned_cols=266  Identities=14%  Similarity=0.091  Sum_probs=245.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      +.+|..+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|.                 
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------   87 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-----------------   87 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-----------------
Confidence            456999999999999999999999999999999999999999999999999999999998876                 


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH--------------hH-HHHh
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM--------------GH-EYVE  383 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~  383 (557)
                                       ++.++..+|.++...|++++|+..|++++..+|.+...+..+              +. ++..
T Consensus        88 -----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (327)
T 3cv0_A           88 -----------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA  150 (327)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS
T ss_pred             -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence                             456788899999999999999999999999999988877776              66 6888


Q ss_pred             cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~  463 (557)
                      .|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++..|+++.++..+|.++..  .|++++|+..
T Consensus       151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~  228 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN--GNRPQEALDA  228 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc------------hHHHHHHHHHHHHHcCC
Q 008705          464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN------------MVEALIFLATHCRAHGR  531 (557)
Q Consensus       464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~  531 (557)
                      |++++...|.++.++..+|.++...|++++|+.+|+++++       ..|.            .+.++..+|.++...|+
T Consensus       229 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (327)
T 3cv0_A          229 YNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY-------MQVGGTTPTGEASREATRSMWDFFRMLLNVMNR  301 (327)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999       3455            78999999999999999


Q ss_pred             HHHHHHHHHHHhccCC
Q 008705          532 FEEAEVYCTRLLDYTG  547 (557)
Q Consensus       532 ~~~A~~~~~~al~~~~  547 (557)
                      +++|...++++++..|
T Consensus       302 ~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          302 PDLVELTYAQNVEPFA  317 (327)
T ss_dssp             HHHHHHHTTCCSHHHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999998887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=2e-26  Score=238.00  Aligned_cols=355  Identities=8%  Similarity=0.021  Sum_probs=220.8

Q ss_pred             hHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHH
Q 008705          157 ELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWM  236 (557)
Q Consensus       157 ~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~  236 (557)
                      ++..+...++++....|.++.+|..+|..+.+.|++++|+..|++++...| +...|..+                    
T Consensus        27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~--------------------   85 (530)
T 2ooe_A           27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY--------------------   85 (530)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH--------------------
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH--------------------
Confidence            344444444444444444444444444444444444444444444444444 33333332                    


Q ss_pred             HHHHHH-HHHHHHhhhHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHhC
Q 008705          237 KDYFLA-SAYQELRMHKESLT----KYEYLQGT---FSFSNYIQAQIAKAQYS---------LREFEQVEVIFEELLRND  299 (557)
Q Consensus       237 ~~~~la-~~~~~~~~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~  299 (557)
                           + ......|++++|.+    .|++++..   +|.+..+|...+.....         .|+++.|..+|++++. .
T Consensus        86 -----~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~  159 (530)
T 2ooe_A           86 -----LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N  159 (530)
T ss_dssp             -----HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred             -----HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence                 3 23345577776655    77777653   56677888887777655         7899999999999998 5


Q ss_pred             CCCC--CcHHHHHHHHHhc-------------cchhHHHHHHHH------HHhh-----CCCC-------hhHHHHHHHH
Q 008705          300 PYRV--DDMDMYSNVLYAK-------------ECFSALSYLAHR------VFMT-----DKYR-------PESCCIIGNY  346 (557)
Q Consensus       300 p~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~------~~~~-----~~~~-------~~~~~~la~~  346 (557)
                      |...  ..+..+.......             +.+..+...+..      .+..     .|..       ...|......
T Consensus       160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~  239 (530)
T 2ooe_A          160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW  239 (530)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence            6542  1222233322111             122222222221      1111     1111       1233222221


Q ss_pred             Hhh----hCch----HHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-------cCCch-------HHHHHHHHHHh-hCCC
Q 008705          347 YSL----KGQH----EKSVVYFRRALKLDKNYLSAWTLMGHEYVE-------MKNTP-------AAIDAYRRAVD-INPR  403 (557)
Q Consensus       347 ~~~----~g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~al~-~~p~  403 (557)
                      ...    .++.    .+++..|++++..+|.++.+|..+|..+..       .|+++       +|+..|++++. ..|+
T Consensus       240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            111    1122    366777888888888888888888877765       67776       77888888886 6787


Q ss_pred             ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705          404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA  482 (557)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  482 (557)
                      +..+|..+|.++...|++++|...|+++++..|.++ .+|..+|.++..  .|++++|+.+|+++++..|.....+...+
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR--AEGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            788888888888888888888888888888777775 577778877777  77888888888888877776666666555


Q ss_pred             HH-HHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705          483 KL-HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       483 ~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  547 (557)
                      .+ +...|++++|..+|+++++       ..|+++.++..++.++...|+.++|..+|++++...|
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~-------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLK-------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHH-------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHcCChhHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence            55 3357788888888888877       4577777788888888788888888888888877643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=1.2e-25  Score=232.22  Aligned_cols=416  Identities=12%  Similarity=0.071  Sum_probs=311.5

Q ss_pred             ccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh
Q 008705           87 EVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS  166 (557)
Q Consensus        87 ~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  166 (557)
                      |........+++ +...|++++|..+|++++...|.....+..|...+.                  ..++...+...++
T Consensus        10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~------------------~~~~~~~a~~~~~   70 (530)
T 2ooe_A           10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI------------------KAKNYDKVEKLFQ   70 (530)
T ss_dssp             TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH------------------HTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH------------------hcCCHHHHHHHHH
Confidence            344456667787 477899999999999998755543333222222110                  1133455566677


Q ss_pred             hhhcCCCCChhHHHHHHH-HHHhcCChHHHHH----HHHHHhcc---CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHH
Q 008705          167 TSWKNGTVDPFGLYLYGI-VLKDKGNENLART----VFVESVNS---YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD  238 (557)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  238 (557)
                      +.+...| +..+|..++. .....|++++|.+    .|++++..   +|.+...|..++.+.....      ...     
T Consensus        71 ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~------~~~-----  138 (530)
T 2ooe_A           71 RCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE------AVG-----  138 (530)
T ss_dssp             HHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSC------CCS-----
T ss_pred             HHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCC------Ccc-----
Confidence            7777778 6778888885 4456788888776    88888754   5667777766633221100      000     


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH--HHHHHHHHHH-------------HhcccHHHHHHHHHH------HHH
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSN--YIQAQIAKAQ-------------YSLREFEQVEVIFEE------LLR  297 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------~l~  297 (557)
                           .+...|++++|..+|+++++ .|...  .++...+...             ...+++..|...+..      .++
T Consensus       139 -----~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~  212 (530)
T 2ooe_A          139 -----SYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLD  212 (530)
T ss_dssp             -----STTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -----cHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence                 01237899999999999999 56543  2332222211             235678888877776      333


Q ss_pred             h-----CCCCC-------CcHHHHHHHHHhc----cch----hHHHHHHHHHHhhCCCChhHHHHHHHHHhh-------h
Q 008705          298 N-----DPYRV-------DDMDMYSNVLYAK----ECF----SALSYLAHRVFMTDKYRPESCCIIGNYYSL-------K  350 (557)
Q Consensus       298 ~-----~p~~~-------~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~  350 (557)
                      .     .|...       ..+..+.......    ++.    ..+...+++++...|.++.+|+.+|.++..       .
T Consensus       213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~  292 (530)
T 2ooe_A          213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK  292 (530)
T ss_dssp             SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhc
Confidence            2     22211       1222222111111    111    356778999999999999999999999986       7


Q ss_pred             CchH-------HHHHHHHHHHh-cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhCCh
Q 008705          351 GQHE-------KSVVYFRRALK-LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY-RAWYGLGQAYEMMHMP  421 (557)
Q Consensus       351 g~~~-------~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~  421 (557)
                      |+++       +|+..|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|..+|.++...|++
T Consensus       293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  372 (530)
T 2ooe_A          293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI  372 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence            9987       99999999997 8999999999999999999999999999999999999985 6999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (557)
                      ++|+..|+++++..|.....+...+.+ +..  .|++++|..+|+++++..|+++.++..++.++...|+.++|..+|++
T Consensus       373 ~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~--~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~  450 (530)
T 2ooe_A          373 KSGRMIFKKAREDARTRHHVYVTAALMEYYC--SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  450 (530)
T ss_dssp             HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence            999999999999999887777776665 446  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          501 DLERMEAEEREGPN----MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       501 al~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      ++.       ..|.    ...+|...+......|+.+.+..++.++++..|.
T Consensus       451 al~-------~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          451 VLT-------SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHH-------SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHh-------ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            998       4333    3448888899999999999999999999999874

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=6.5e-28  Score=217.97  Aligned_cols=201  Identities=20%  Similarity=0.214  Sum_probs=179.9

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705          414 AYEMM-----------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA  482 (557)
Q Consensus       414 ~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  482 (557)
                      ++...           |++++|+..|+++++++|+++.++..+|.++..  .|++++|+..|+++++++ +++.++..+|
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~-~~~~~~~~la  158 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL--LGERDKAEASLKQALALE-DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence            99999           999999999999999999999999999999999  999999999999999999 9999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      .++...|++++|+..|+++++       ..|+++.++..+|.++...|++++|+..|+++-.
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~-------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALE-------QAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            999999999999999999999       6899999999999999999999999999998754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=6.1e-25  Score=224.48  Aligned_cols=323  Identities=15%  Similarity=0.100  Sum_probs=291.9

Q ss_pred             CCChhHHHHHHHHHHh----cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH-
Q 008705          173 TVDPFGLYLYGIVLKD----KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE-  247 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~-  247 (557)
                      +.++.+++.+|.++..    .+++++|+.+|+++++.  .+..++..|                         |.+|.. 
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------------------------g~~y~~g   88 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVL-------------------------GLRYMNG   88 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH-------------------------HHHHHHT
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH-------------------------HHHHHcC
Confidence            6789999999999999    99999999999999886  566766555                         999998 


Q ss_pred             ---HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh----c
Q 008705          248 ---LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA----K  316 (557)
Q Consensus       248 ---~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~  316 (557)
                         .+++++|+..|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.++..++.++..    .
T Consensus        89 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~  164 (490)
T 2xm6_A           89 EGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVT  164 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence               89999999999999875  588999999999998    89999999999999876  467888999999887    7


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCch
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTP  388 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~  388 (557)
                      ++.+++..+++++...  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .++++
T Consensus       165 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~  240 (490)
T 2xm6_A          165 RDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT  240 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            8999999999998876  579999999999998    89999999999999875  568899999999997    89999


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc-----CcHHH
Q 008705          389 AAIDAYRRAVDINPRDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-----HMLEE  459 (557)
Q Consensus       389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-----~~~~~  459 (557)
                      +|+..|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..  .     +++++
T Consensus       241 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~--~~~g~~~~~~~  314 (490)
T 2xm6_A          241 QSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK--GAEGVAKNREQ  314 (490)
T ss_dssp             HHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH--CBTTBCCCHHH
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--CCCCCcCCHHH
Confidence            999999999876  468899999999999    99999999999999875  678999999999998  7     89999


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCH
Q 008705          460 AIKCYRRAANCNDSEAIALNQLAKLHHALG---RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRF  532 (557)
Q Consensus       460 A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~  532 (557)
                      |+.+|+++.+.  .++.+++.+|.+|...|   ++++|+.+|+++++       .  .++.+++.+|.+|..    .+++
T Consensus       315 A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-------~--~~~~a~~~Lg~~y~~g~g~~~~~  383 (490)
T 2xm6_A          315 AISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-------K--GEKAAQFNLGNALLQGKGVKKDE  383 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-------T--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-------C--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            99999999986  45789999999999977   89999999999998       3  568899999999999    8999


Q ss_pred             HHHHHHHHHHhccCC
Q 008705          533 EEAEVYCTRLLDYTG  547 (557)
Q Consensus       533 ~~A~~~~~~al~~~~  547 (557)
                      ++|..+|+++++..+
T Consensus       384 ~~A~~~~~~A~~~~~  398 (490)
T 2xm6_A          384 QQAAIWMRKAAEQGL  398 (490)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999998753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.3e-27  Score=217.62  Aligned_cols=241  Identities=15%  Similarity=0.055  Sum_probs=222.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      ..+..++.+|.++...|++++|+..|+++++.+ .+..++..+                         |.++...|++++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~-------------------------~~~~~~~~~~~~   56 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNR-------------------------AAAEYEKGEYET   56 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHH-------------------------HHHHHHcccHHH
Confidence            346789999999999999999999999999999 777777665                         999999999999


Q ss_pred             HHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          254 SLTKYEYLQGTFSFS-------NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       254 A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      |+..++++++..|..       +.++..+|.++...|++++|+..|++++...|.                         
T Consensus        57 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------  111 (258)
T 3uq3_A           57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------------------  111 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------------
T ss_pred             HHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------------------
Confidence            999999999988876       789999999999999999999999999998874                         


Q ss_pred             HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR  406 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  406 (557)
                                       +.++...|++++|+..+++++..+|....++..+|.++...|++++|+..|++++..+|.+..
T Consensus       112 -----------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  174 (258)
T 3uq3_A          112 -----------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR  174 (258)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             -----------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence                             245666788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC------CChHHHHHH
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN------DSEAIALNQ  480 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~  480 (557)
                      ++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++..  .|++++|+.+|++++++.      |.+..++..
T Consensus       175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~  252 (258)
T 3uq3_A          175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA--VKEYASALETLDAARTKDAEVNNGSSAREIDQL  252 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence            999999999999999999999999999999999999999999999  999999999999999998      888888877


Q ss_pred             HHHH
Q 008705          481 LAKL  484 (557)
Q Consensus       481 la~~  484 (557)
                      ++.+
T Consensus       253 l~~~  256 (258)
T 3uq3_A          253 YYKA  256 (258)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            7765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=2.9e-27  Score=221.98  Aligned_cols=253  Identities=14%  Similarity=0.076  Sum_probs=215.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      ++..++.+|.++...|++++|+..|+++++.+|.+..++..+                         |.++...|++++|
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------~~~~~~~~~~~~A   56 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR-------------------------AVCYYELAKYDLA   56 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH-------------------------HHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-------------------------HHHHHHHhhHHHH
Confidence            456789999999999999999999999999999998877666                         8899999999999


Q ss_pred             HHHHHHHHhcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHH
Q 008705          255 LTKYEYLQGTFSFS----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF  330 (557)
Q Consensus       255 ~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (557)
                      +..++++++ .|.+    ..++..+|.++...|++++|+..|+++++.+|.                             
T Consensus        57 ~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----------------------------  106 (272)
T 3u4t_A           57 QKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-----------------------------  106 (272)
T ss_dssp             HHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------------------
T ss_pred             HHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----------------------------
Confidence            999999998 4433    445899999999999999999999999998876                             


Q ss_pred             hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH
Q 008705          331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG  410 (557)
Q Consensus       331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  410 (557)
                           .+.++..+|.++...|++++|+.+|+++++.+|.+..++..+|......+++++|+..|+++++.+|++..++..
T Consensus       107 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  181 (272)
T 3u4t_A          107 -----RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW  181 (272)
T ss_dssp             -----CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence                 456778899999999999999999999999999999999999944445569999999999999999999999999


Q ss_pred             HHHHHHHhCC---hHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHH
Q 008705          411 LGQAYEMMHM---PLYALHYFRKSVFLQ---PND-----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALN  479 (557)
Q Consensus       411 l~~~~~~~~~---~~~A~~~~~~a~~~~---p~~-----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  479 (557)
                      +|.++...|+   +++|+..|+++++..   |+.     ..++..+|.++..  .|++++|+.+|+++++++|+++.++.
T Consensus       182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~a~~  259 (272)
T 3u4t_A          182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI--NRDKVKADAAWKNILALDPTNKKAID  259 (272)
T ss_dssp             HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCccHHHHHH
Confidence            9999999998   888999999998875   442     3678889999999  99999999999999999999999988


Q ss_pred             HHHHHHHHcC
Q 008705          480 QLAKLHHALG  489 (557)
Q Consensus       480 ~la~~~~~~g  489 (557)
                      .++.+....+
T Consensus       260 ~l~~~~~~~~  269 (272)
T 3u4t_A          260 GLKMKLEHHH  269 (272)
T ss_dssp             HHC-------
T ss_pred             Hhhhhhcccc
Confidence            8887765543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=236.40  Aligned_cols=310  Identities=19%  Similarity=0.140  Sum_probs=262.1

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      +.....++.+|.++...|++++|+..|+++++..|.+......                     ..+.+|.++...|+++
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~   64 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA---------------------IYSQLGNAYFYLHDYA   64 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHH---------------------HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHH---------------------HHHHHHHHHHHhcCHH
Confidence            4567789999999999999999999999999999998643211                     1244699999999999


Q ss_pred             HHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          253 ESLTKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       253 ~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      +|+..+++++..      .|....++..+|.++...|++++|+..+++++...|.....                     
T Consensus        65 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------  123 (406)
T 3sf4_A           65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK---------------------  123 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---------------------
Confidence            999999999876      33456788999999999999999999999999876642110                     


Q ss_pred             HHHHhhCCCChhHHHHHHHHHhhhCc--------------------hHHHHHHHHHHHhc------CcCCHHHHHHHhHH
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSLKGQ--------------------HEKSVVYFRRALKL------DKNYLSAWTLMGHE  380 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~  380 (557)
                             +..+.++..+|.+|...|+                    +++|+.++++++.+      .+....++..+|.+
T Consensus       124 -------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  196 (406)
T 3sf4_A          124 -------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT  196 (406)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence                   1124577889999999999                    99999999999887      34446689999999


Q ss_pred             HHhcCCchHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHH
Q 008705          381 YVEMKNTPAAIDAYRRAVDINPRDYR------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQC  448 (557)
Q Consensus       381 ~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~  448 (557)
                      +...|++++|+..+++++.+.+....      ++..+|.++...|++++|+.++++++.+.|..      ..++..+|.+
T Consensus       197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  276 (406)
T 3sf4_A          197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT  276 (406)
T ss_dssp             HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence            99999999999999999998765533      89999999999999999999999999887655      6788999999


Q ss_pred             HhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH
Q 008705          449 YETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL  522 (557)
Q Consensus       449 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  522 (557)
                      +..  .|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|+++++.... ....+....++..+
T Consensus       277 ~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l  353 (406)
T 3sf4_A          277 YTL--LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE-VGDKSGELTARLNL  353 (406)
T ss_dssp             HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             HHH--hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hcCCcchhHHHHHH
Confidence            999  999999999999999874433      668999999999999999999999999985443 23356778899999


Q ss_pred             HHHHHHcCCHHH
Q 008705          523 ATHCRAHGRFEE  534 (557)
Q Consensus       523 a~~~~~~g~~~~  534 (557)
                      |.++...|+...
T Consensus       354 ~~~~~~~g~~~~  365 (406)
T 3sf4_A          354 SDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHhhHhHH
Confidence            999999997733

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=3.9e-27  Score=212.85  Aligned_cols=200  Identities=18%  Similarity=0.240  Sum_probs=150.5

Q ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHH
Q 008705          266 SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGN  345 (557)
Q Consensus       266 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  345 (557)
                      |.++.++..+|.++...|++++|+..|+++++.+|.                                  ++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------------------------------~~~a~~~lg~   47 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----------------------------------DPEALYWLAR   47 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----------------------------------CHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHH
Confidence            566677777788888888888888888877777765                                  4567777788


Q ss_pred             HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-----------CCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-----------KNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      ++...|++++|+..|+++++++|++..++..+|.++...           |++++|+..|+++++++|++..++..+|.+
T Consensus        48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~  127 (217)
T 2pl2_A           48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV  127 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            888888888888888888888888888888888888888           888888888888888888888888888888


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      +..+|++++|+..|+++++++ +++.++..+|.++..  .|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus       128 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          128 YALLGERDKAEASLKQALALE-DTPEIRSALAELYLS--MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred             HHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence            888888888888888888888 788888888888888  88888888888888888888888888888888888888888


Q ss_pred             HHHHHHHH
Q 008705          495 AFYYKKDL  502 (557)
Q Consensus       495 ~~~~~~al  502 (557)
                      +..|+++-
T Consensus       205 ~~~~~~~~  212 (217)
T 2pl2_A          205 ARAAALEH  212 (217)
T ss_dssp             --------
T ss_pred             HHHHHHHh
Confidence            88887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=2.5e-26  Score=215.57  Aligned_cols=253  Identities=19%  Similarity=0.165  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE  317 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  317 (557)
                      .+..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++. .|.+..             
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-------------   71 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-------------   71 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-------------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-------------
Confidence            345688888888888888888888888888888888888888888888888888888887 443221             


Q ss_pred             chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705          318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                                       ..+.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++
T Consensus        72 -----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A           72 -----------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             -----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred             -----------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                             135568899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc---HHHHHHHHHHHHhcC---
Q 008705          398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM---LEEAIKCYRRAANCN---  471 (557)
Q Consensus       398 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~---~~~A~~~~~~al~~~---  471 (557)
                      ++.+|.+..+++.+|......+++++|+..|+++++.+|+++.++..+|.++..  .|+   +++|+..|+++++..   
T Consensus       135 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~~~~  212 (272)
T 3u4t_A          135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA--QDPDTKQGLAKPYYEKLIEVCAPG  212 (272)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred             hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--cCcchhhHHHHHHHHHHHHHHhcc
Confidence            999999999999999555556699999999999999999999999999999999  998   899999999999875   


Q ss_pred             CC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705          472 DS-----EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG  530 (557)
Q Consensus       472 p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  530 (557)
                      |+     ...++..+|.+|...|++++|+.+|+++++       .+|+++.++-.++.+....+
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA-------LDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHC-------
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCccHHHHHHHhhhhhcccc
Confidence            44     236899999999999999999999999999       68999999998887765543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.95  E-value=4.5e-26  Score=215.27  Aligned_cols=278  Identities=10%  Similarity=0.026  Sum_probs=242.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFS-NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF  319 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  319 (557)
                      -..-.+..|+|++|+..++++....|++ .+....++++|...|+++.|+..++.   .+|....++..++..+...++.
T Consensus         5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence            3566788999999999999988888876 45778889999999999999988765   2555556677788888888899


Q ss_pred             hHHHHHHHHHHhh--CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705          320 SALSYLAHRVFMT--DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       320 ~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                      +++...++.++..  +|.++.+++.+|.++...|++++|+..|++     |.+..++..+|.++..+|++++|+..|+++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999998765  699999999999999999999999999988     889999999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHH--HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          398 VDINPRDYRAWYGLG--QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       398 l~~~p~~~~~~~~l~--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      ++.+|++.......+  .++...|++++|+..|+++++..|+++.+++.+|.++..  .|++++|+..|++++..+|+++
T Consensus       157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA--QGRWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCH
Confidence            999998865444333  334455899999999999999999999999999999999  9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          476 IALNQLAKLHHALGRDEE-AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC  539 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  539 (557)
                      .++.++|.++...|+.++ +..+++++++       ..|+++.+.    .+..+.+.|++|..-|
T Consensus       235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~-------~~P~~~~~~----d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD-------AHRSHPFIK----EYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------HCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------hCCCChHHH----HHHHHHHHHHHHHHHc
Confidence            999999999999999976 5689999998       689888754    4566667777776655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.6e-26  Score=212.46  Aligned_cols=250  Identities=16%  Similarity=0.147  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705          237 KDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK  316 (557)
Q Consensus       237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  316 (557)
                      ..+.+|.++...|++++|+..|+++++.. .++.++..+|.++...|++++|+..|+++++..|.......         
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------   76 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK---------   76 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH---------
Confidence            34556999999999999999999999999 88999999999999999999999999999998875422111         


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                                        ..+.++..+|.++...|++++|+.+|++++.+.|.        +.++...|++++|+..+++
T Consensus        77 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~  130 (258)
T 3uq3_A           77 ------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEA  130 (258)
T ss_dssp             ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHH
Confidence                              12577889999999999999999999999999987        4677888899999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      ++..+|.+..++..+|.++...|++++|+.+|++++...|.++.++..+|.++..  .|++++|+.+|++++...|+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~  208 (258)
T 3uq3_A          131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK--LMSFPEAIADCNKAIEKDPNFVR  208 (258)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH  525 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  525 (557)
                      ++..+|.++...|++++|+.+|+++++..+ .....|.+..++..++.+
T Consensus       209 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          209 AYIRKATAQIAVKEYASALETLDAARTKDA-EVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCh-hhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999999422 222348888888877765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.95  E-value=4.9e-26  Score=229.15  Aligned_cols=351  Identities=9%  Similarity=-0.014  Sum_probs=183.2

Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCC
Q 008705           94 YLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGT  173 (557)
Q Consensus        94 ~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~  173 (557)
                      ..+|..++..|++++|...|++...                                                      +
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~------------------------------------------------------~   32 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAE------------------------------------------------------L   32 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------H
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHH------------------------------------------------------C
Confidence            4589999999999999998887522                                                      1


Q ss_pred             CChhHHHHHHHHHHhcCCh---HHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-
Q 008705          174 VDPFGLYLYGIVLKDKGNE---NLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR-  249 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~-  249 (557)
                      .++.+++.+|.++...|+.   ++|+.+|+++++.   ++.++..|                         |.++...+ 
T Consensus        33 g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L-------------------------g~~~~~~~~   84 (452)
T 3e4b_A           33 GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL-------------------------GRLLAAKPG   84 (452)
T ss_dssp             TCCTGGGTCC-------------------------------CHHHH-------------------------HHHHHTC--
T ss_pred             CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH-------------------------HHHHHhCCC
Confidence            2234445555555555555   5666666665544   23333333                         44333222 


Q ss_pred             ----hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHhccchhH---
Q 008705          250 ----MHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND-PYRVDDMDMYSNVLYAKECFSA---  321 (557)
Q Consensus       250 ----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~---  321 (557)
                          ++++|+..|+++++.  .++.+++.+|.+|...+...++...++...... +.++.+...++.++...+.++.   
T Consensus        85 ~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           85 ATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence                555566666665543  223355555555555544333322222222211 2234555555555555543322   


Q ss_pred             -HHHHHHHHHhhCCCChhHHHHHHHHHhhhC---chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc----CCchHHHHH
Q 008705          322 -LSYLAHRVFMTDKYRPESCCIIGNYYSLKG---QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM----KNTPAAIDA  393 (557)
Q Consensus       322 -~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~  393 (557)
                       +..+.+.+..   .++.+++.+|.+|...|   ++++|+.+|+++.+..+.....++.+|.+|...    +++++|+..
T Consensus       163 ~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~  239 (452)
T 3e4b_A          163 DVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL  239 (452)
T ss_dssp             HHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence             2222222222   23346666666666666   666666666666666666666666666666544    566666666


Q ss_pred             HHHHHhhCCCChHHHHHHHHH-H--HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHH
Q 008705          394 YRRAVDINPRDYRAWYGLGQA-Y--EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAA  468 (557)
Q Consensus       394 ~~~al~~~p~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al  468 (557)
                      |+++.   |.++.+++.+|.+ +  ...+++++|+.+|+++.+.  .++.+++.+|.+|..+  ...++++|+.+|+++.
T Consensus       240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence            66665   5666666666666 3  3566666666666666643  3566666666666540  0016666666666665


Q ss_pred             hcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008705          469 NCNDSEAIALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCT  540 (557)
Q Consensus       469 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~  540 (557)
                         +.++.+++++|.+|..    ..++++|+.+|+++.+         +.++.+.+.||.+|..    ..++.+|..+|+
T Consensus       315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~  382 (452)
T 3e4b_A          315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR---------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ  382 (452)
T ss_dssp             ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT---------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh---------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence               5666666666666655    2366666666666655         2345566666666653    346666666666


Q ss_pred             HHhccCCC
Q 008705          541 RLLDYTGP  548 (557)
Q Consensus       541 ~al~~~~~  548 (557)
                      ++.+..++
T Consensus       383 ~A~~~g~~  390 (452)
T 3e4b_A          383 LAKAQDTP  390 (452)
T ss_dssp             HHHTTCCH
T ss_pred             HHHHCCCH
Confidence            66665433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=2e-25  Score=210.82  Aligned_cols=275  Identities=9%  Similarity=-0.063  Sum_probs=220.1

Q ss_pred             HHHHhcCChHHHHHHHHHHhccCCCCH-HHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008705          184 IVLKDKGNENLARTVFVESVNSYPWNW-NAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQ  262 (557)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  262 (557)
                      ...+..|+|.+|+..+++....+|.+. ++.                         ++++.+|...|++++|+..++.. 
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~-------------------------~~l~r~yi~~g~~~~al~~~~~~-   60 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERD-------------------------VFLYRAYLAQRKYGVVLDEIKPS-   60 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHH-------------------------HHHHHHHHHTTCHHHHHHHSCTT-
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHH-------------------------HHHHHHHHHCCCHHHHHHHhccc-
Confidence            345667888888888877766666542 222                         34477788888888887766542 


Q ss_pred             hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHH
Q 008705          263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN--DPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESC  340 (557)
Q Consensus       263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (557)
                        .|....++..++..+...|++++|+..+++++..  +|++...+..++.++...|+++++...+++     |.+++++
T Consensus        61 --~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~  133 (291)
T 3mkr_A           61 --SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECM  133 (291)
T ss_dssp             --SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHH
T ss_pred             --CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHH
Confidence              4445666777777777778888888888887765  477777777778888888888887777666     6788999


Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHh--HHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG--HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM  418 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  418 (557)
                      ..+|.++...|++++|+..|+++++.+|++.......+  .++...|++++|+..|+++++.+|+++.+++.+|.++..+
T Consensus       134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~  213 (291)
T 3mkr_A          134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ  213 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999865544433  3444568999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705          419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE-AIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY  497 (557)
Q Consensus       419 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  497 (557)
                      |++++|+..|++++..+|+++.++.++|.++..  .|++++ +..+++++++++|+++.+..    +..+.+.++++..-
T Consensus       214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~--~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQH--LGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ  287 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999  999976 57899999999999997653    34444455555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.94  E-value=1.1e-25  Score=224.74  Aligned_cols=280  Identities=15%  Similarity=0.105  Sum_probs=240.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                      .+.+|..+...|++++|+..|+++++..|+++    .++..+|.++...|++++|+..|++++.......          
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------  120 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN----------  120 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc----------
Confidence            35579999999999999999999999999987    5789999999999999999999999987632110          


Q ss_pred             HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHhcCC-
Q 008705          314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL------DKNYLSAWTLMGHEYVEMKN-  386 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~-  386 (557)
                                        ..+....++..+|.+|...|++++|+.+|++++..      .+....++..+|.++...|+ 
T Consensus       121 ------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  182 (411)
T 4a1s_A          121 ------------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH  182 (411)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcc
Confidence                              11224567888999999999999999999999988      55667789999999999999 


Q ss_pred             ----------------chHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-----
Q 008705          387 ----------------TPAAIDAYRRAVDIN------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-----  439 (557)
Q Consensus       387 ----------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----  439 (557)
                                      +++|+..+++++.+.      +....++..+|.++...|++++|+.+|++++++.+...     
T Consensus       183 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  262 (411)
T 4a1s_A          183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE  262 (411)
T ss_dssp             HHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence                            999999999998864      23356899999999999999999999999998876432     


Q ss_pred             -HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705          440 -RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG  512 (557)
Q Consensus       440 -~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (557)
                       .++..+|.++..  .|++++|+.+|++++...+..      ..++..+|.++...|++++|+.++++++...... ...
T Consensus       263 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~  339 (411)
T 4a1s_A          263 RRANSNLGNSHIF--LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDR  339 (411)
T ss_dssp             HHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCH
T ss_pred             HHHHHHHHHHHHH--CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCh
Confidence             388999999999  999999999999999886643      6789999999999999999999999999854332 234


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      +....++..+|.++...|++++|..+|++++++.+.
T Consensus       340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            556789999999999999999999999999998643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=8.6e-26  Score=224.86  Aligned_cols=280  Identities=16%  Similarity=0.147  Sum_probs=239.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705          236 MKDYFLASAYQELRMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN  311 (557)
Q Consensus       236 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  311 (557)
                      ...+.+|.++...|++++|+..|++++...|.++    .++..+|.++...|++++|+..|++++...+...        
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------   81 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--------   81 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--------
Confidence            3445679999999999999999999999999884    5788999999999999999999999987643211        


Q ss_pred             HHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcC
Q 008705          312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMK  385 (557)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~  385 (557)
                                          ..+..+.++..+|.++...|++++|+.++++++.+.|..      ..++..+|.++...|
T Consensus        82 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  141 (406)
T 3sf4_A           82 --------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG  141 (406)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence                                012235678889999999999999999999999886653      458999999999999


Q ss_pred             C--------------------chHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705          386 N--------------------TPAAIDAYRRAVDI------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS  439 (557)
Q Consensus       386 ~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  439 (557)
                      +                    +++|+..+++++.+      .+....++..+|.++...|++++|+.++++++++.+...
T Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  221 (406)
T 3sf4_A          142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  221 (406)
T ss_dssp             HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred             CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence            9                    99999999999886      333466899999999999999999999999998865443


Q ss_pred             ------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705          440 ------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA  507 (557)
Q Consensus       440 ------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (557)
                            .++..+|.++..  .|++++|+.++++++.+.+..      ..++..+|.++...|++++|+.+|+++++....
T Consensus       222 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          222 DKAAERRAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence                  388999999999  999999999999999876544      668999999999999999999999999985433


Q ss_pred             hhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       508 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      . ...+....++..+|.++...|++++|..+|++++++.
T Consensus       300 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  337 (406)
T 3sf4_A          300 L-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  337 (406)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             c-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            2 2245558899999999999999999999999999874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.93  E-value=2.8e-25  Score=214.79  Aligned_cols=281  Identities=16%  Similarity=0.142  Sum_probs=236.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 008705          237 KDYFLASAYQELRMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNV  312 (557)
Q Consensus       237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  312 (557)
                      ..+..|..+...|++++|+..|+++++..|.++    .++..+|.++...|++++|+..+++++...+..          
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------   76 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI----------   76 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------
Confidence            345679999999999999999999999999984    678899999999999999999999998763311          


Q ss_pred             HHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCC
Q 008705          313 LYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKN  386 (557)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~  386 (557)
                                        ...+..+.++..+|.++...|++++|+.++++++++.+..      ..++..+|.++...|+
T Consensus        77 ------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           77 ------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             ------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                              0112235678889999999999999999999999886543      3488999999999999


Q ss_pred             --------------------chHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC--
Q 008705          387 --------------------TPAAIDAYRRAVDIN------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND--  438 (557)
Q Consensus       387 --------------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--  438 (557)
                                          +++|+..+++++.+.      +....++..+|.++...|++++|+.++++++++.+..  
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence                                999999999998762      3335688999999999999999999999999875432  


Q ss_pred             ----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705          439 ----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE  508 (557)
Q Consensus       439 ----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (557)
                          ..++..+|.++..  .|++++|+.++++++...+..      ..++..+|.++...|++++|+.+++++++.....
T Consensus       219 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence                3388999999999  999999999999999875544      6689999999999999999999999999854332


Q ss_pred             hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          509 EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       509 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                       ...+....++..+|.++...|++++|..++++++++.+.
T Consensus       297 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          297 -KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             -CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence             234455778999999999999999999999999998653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.93  E-value=2.1e-25  Score=222.73  Aligned_cols=281  Identities=18%  Similarity=0.148  Sum_probs=240.0

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      +.....++.+|..+...|++++|+..|+++++..|.+......                     ..+.+|.++...|+++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------~~~~lg~~~~~~g~~~  103 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSA---------------------IYSQLGNAYFYLGDYN  103 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHH---------------------HHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHH---------------------HHHHHHHHHHHCCCHH
Confidence            3445678899999999999999999999999999998743211                     1244599999999999


Q ss_pred             HHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          253 ESLTKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       253 ~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      +|+..+++++..      .|....++..+|.++...|++++|+..|++++...+...                       
T Consensus       104 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------------  160 (411)
T 4a1s_A          104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-----------------------  160 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-----------------------
Confidence            999999999887      466778899999999999999999999999988643210                       


Q ss_pred             HHHHhhCCCChhHHHHHHHHHhhhCc-----------------hHHHHHHHHHHHhcC------cCCHHHHHHHhHHHHh
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSLKGQ-----------------HEKSVVYFRRALKLD------KNYLSAWTLMGHEYVE  383 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  383 (557)
                           ..+....++..+|.+|...|+                 +++|+.++++++++.      +....++..+|.++..
T Consensus       161 -----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  235 (411)
T 4a1s_A          161 -----DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL  235 (411)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             -----chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                 012235678889999999999                 999999999998764      3345689999999999


Q ss_pred             cCCchHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhH
Q 008705          384 MKNTPAAIDAYRRAVDINPRDYR------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYET  451 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~  451 (557)
                      .|++++|+..+++++.+.+....      ++..+|.+|...|++++|+.+|++++.+.+..      ..++..+|.++..
T Consensus       236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  315 (411)
T 4a1s_A          236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL  315 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998765433      88999999999999999999999999887644      6788999999999


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                        .|++++|+.++++++.+.+..      ..++..+|.+|...|++++|..+|+++++.
T Consensus       316 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          316 --LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence              999999999999999875432      458999999999999999999999999994

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.93  E-value=5.9e-25  Score=212.51  Aligned_cols=277  Identities=20%  Similarity=0.168  Sum_probs=235.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      ...++..|..+...|++++|+..|+++++..|.+......                     ....+|.++...|++++|+
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~~A~   63 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA---------------------IYSQLGNAYFYLHDYAKAL   63 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHH---------------------HHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHH---------------------HHHHHHHHHHHcCCHHHHH
Confidence            4568899999999999999999999999999998643221                     1234599999999999999


Q ss_pred             HHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705          256 TKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV  329 (557)
Q Consensus       256 ~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (557)
                      ..+++++..      .|....++..+|.++...|++++|+..++++++..+.....                        
T Consensus        64 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------  119 (338)
T 3ro2_A           64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK------------------------  119 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------------------------
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc------------------------
Confidence            999999876      34456788999999999999999999999999876543211                        


Q ss_pred             HhhCCCChhHHHHHHHHHhhhCc--------------------hHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHh
Q 008705          330 FMTDKYRPESCCIIGNYYSLKGQ--------------------HEKSVVYFRRALKL------DKNYLSAWTLMGHEYVE  383 (557)
Q Consensus       330 ~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~  383 (557)
                          +....++..+|.++...|+                    +++|+.++++++..      .+....++..+|.++..
T Consensus       120 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  195 (338)
T 3ro2_A          120 ----VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL  195 (338)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence                0124577789999999999                    99999999999876      23345678999999999


Q ss_pred             cCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhH
Q 008705          384 MKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYET  451 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~  451 (557)
                      .|++++|+..+++++.+.+..      ..++..+|.++...|++++|+.++++++.+.+..      ..++..+|.++..
T Consensus       196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (338)
T 3ro2_A          196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  275 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            999999999999999876543      3388999999999999999999999999886654      6788999999999


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                        .|++++|+.++++++...+..      ..++..+|.++...|++++|..+++++++
T Consensus       276 --~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          276 --LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             --hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence              999999999999999875433      45889999999999999999999999998

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.93  E-value=2.8e-25  Score=208.68  Aligned_cols=251  Identities=16%  Similarity=0.046  Sum_probs=215.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTF----SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK  316 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  316 (557)
                      ++......|++++|+..|+++++..    |.++.++..+|.++...|++++|+..|++++..+|.               
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------------   75 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---------------   75 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---------------
Confidence            3445556789999999999999874    456788999999999999999999999999998886               


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                                         ++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|++
T Consensus        76 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  136 (275)
T 1xnf_A           76 -------------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  136 (275)
T ss_dssp             -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                               4677888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--
Q 008705          397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--  474 (557)
Q Consensus       397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~--  474 (557)
                      +++.+|++......++.. ...|++++|+..+++++...|.+...+. ++.++..  .++.++|+..+++++...|..  
T Consensus       137 a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~  212 (275)
T 1xnf_A          137 FYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLG--NISEQTLMERLKADATDNTSLAE  212 (275)
T ss_dssp             HHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTT--SSCHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHH--hcCHHHHHHHHHHHhcccccccc
Confidence            999999998766655544 6679999999999999999988876655 6666777  888999999999999887643  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          475 --AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC  539 (557)
Q Consensus       475 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  539 (557)
                        +.++..+|.++...|++++|+.+|+++++       ..|.+..   ..+.++...|++++|++.+
T Consensus       213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~---~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          213 HLSETNFYLGKYYLSLGDLDSATALFKLAVA-------NNVHNFV---EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred             cccHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence              68899999999999999999999999998       6776543   3477888999999999887

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=7.5e-24  Score=186.14  Aligned_cols=174  Identities=20%  Similarity=0.315  Sum_probs=168.5

Q ss_pred             CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      .++.+|+.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      +...++++.|+..+.+++...|.++.++..+|.++..  .|++++|+..|+++++++|.++.++..+|.+|..+|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS--MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcchHH
Q 008705          495 AFYYKKDLERMEAEEREGPNMVE  517 (557)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~  517 (557)
                      +.+|+++++       .+|.++.
T Consensus       161 ~~~~~~al~-------~~p~~a~  176 (184)
T 3vtx_A          161 VKYFKKALE-------KEEKKAK  176 (184)
T ss_dssp             HHHHHHHHH-------TTHHHHH
T ss_pred             HHHHHHHHh-------CCccCHH
Confidence            999999999       6787653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=2.2e-24  Score=198.56  Aligned_cols=209  Identities=17%  Similarity=0.184  Sum_probs=99.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      +|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++.+|.                   
T Consensus        29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------------   89 (243)
T 2q7f_A           29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-------------------   89 (243)
T ss_dssp             -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-------------------
Confidence            4455555555555555555555555555555555555555555555555555555444432                   


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI  400 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  400 (557)
                                     .+.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++..
T Consensus        90 ---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           90 ---------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             ---------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                           23444455555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705          401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ  480 (557)
Q Consensus       401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  480 (557)
                      .|.+..++..+|.++...|++++|+..|++++...|.++.++..+|.++..  .|++++|+.+|++++..+|+++.++..
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~  232 (243)
T 2q7f_A          155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY--KENREKALEMLDKAIDIQPDHMLALHA  232 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHccCcchHHHHHH
Confidence            555555555555555555555555555555555555555555555555555  555555555555555555555544444


Q ss_pred             HHHHH
Q 008705          481 LAKLH  485 (557)
Q Consensus       481 la~~~  485 (557)
                      ++.+.
T Consensus       233 ~~~l~  237 (243)
T 2q7f_A          233 KKLLG  237 (243)
T ss_dssp             HTC--
T ss_pred             HHHHH
Confidence            44443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=3.9e-24  Score=196.82  Aligned_cols=220  Identities=15%  Similarity=0.121  Sum_probs=184.7

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      ...+..++.+|..+...|++++|+..|+++++.+|.+..++..+                         |.++...|+++
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l-------------------------a~~~~~~~~~~   74 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF-------------------------ANLLSSVNELE   74 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHH-------------------------HHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHH-------------------------HHHHHHcCCHH
Confidence            34578899999999999999999999999999999998887666                         99999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705          253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT  332 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (557)
                      +|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|.                               
T Consensus        75 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------------------------  123 (243)
T 2q7f_A           75 RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-------------------------------  123 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-------------------------------
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------------------------------
Confidence            9999999999999999999999999999999999999999999998886                               


Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                         ++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus       124 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  200 (243)
T 2q7f_A          124 ---NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG  200 (243)
T ss_dssp             ---SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence               35677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      .++...|++++|+.+|+++++.+|+++.++..++.+...
T Consensus       201 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          201 VTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred             HHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence            999999999999999999999999999999888776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=1.1e-23  Score=195.07  Aligned_cols=210  Identities=16%  Similarity=0.158  Sum_probs=200.3

Q ss_pred             CCCC-hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          333 DKYR-PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       333 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                      +|.. +.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            4444 788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705          412 GQAYEMMHMPLYALHYFRKSVF--LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG  489 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  489 (557)
                      |.++...|++++|+.+|++++.  ..|.++.++..+|.++..  .|++++|+.+|++++...|.++.++..+|.++...|
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ--MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence            9999999999999999999999  888889999999999999  999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ++++|+.+++++++       ..|....++..++.++...|++++|..+++++++..|.+..
T Consensus       190 ~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          190 EYVPARQYYDLFAQ-------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             CHHHHHHHHHHHHT-------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             CHHHHHHHHHHHHH-------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            99999999999998       78899999999999999999999999999999999876543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.92  E-value=8e-24  Score=185.98  Aligned_cols=172  Identities=19%  Similarity=0.283  Sum_probs=166.8

Q ss_pred             CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      +.+.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705          449 YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA  528 (557)
Q Consensus       449 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  528 (557)
                      +..  .++++.|+..+.+++...|.++.++..+|.++..+|++++|+..|+++++       .+|.++.++..+|.++..
T Consensus        83 ~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           83 NFM--IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS-------IKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHH
T ss_pred             HHH--cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-------hcchhhhHHHHHHHHHHH
Confidence            999  99999999999999999999999999999999999999999999999999       689999999999999999


Q ss_pred             cCCHHHHHHHHHHHhccCCCc
Q 008705          529 HGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       529 ~g~~~~A~~~~~~al~~~~~~  549 (557)
                      +|++++|+.+|+++++++|.+
T Consensus       154 ~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          154 KGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHHHHHHhCCccC
Confidence            999999999999999998654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.92  E-value=9.1e-25  Score=205.16  Aligned_cols=254  Identities=10%  Similarity=-0.000  Sum_probs=203.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008705          183 GIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQ  262 (557)
Q Consensus       183 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  262 (557)
                      +......|++++|+..|+++++..|.+..                     ......+.+|.++...|++++|+..|++++
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al   70 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDD---------------------ERAQLLYERGVLYDSLGLRALARNDFSQAL   70 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCc---------------------hhHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            33445568899999999999987543321                     111222445999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH
Q 008705          263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI  342 (557)
Q Consensus       263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (557)
                      +.+|.++.++..+|.++...|++++|+..|+++++.+|.                                  ++.++..
T Consensus        71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~  116 (275)
T 1xnf_A           71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT----------------------------------YNYAHLN  116 (275)
T ss_dssp             HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------CTHHHHH
T ss_pred             HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc----------------------------------ccHHHHH
Confidence            999999999999999999999999999999999988876                                  3567778


Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      +|.++...|++++|+.+|+++++.+|++.......+.. ...|++++|+..+++++...|.+...+. ++.++...++.+
T Consensus       117 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  194 (275)
T 1xnf_A          117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQ  194 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHH
Confidence            88899999999999999999999999888666655544 5668999999999999998888766654 777778888889


Q ss_pred             HHHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          423 YALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYY  498 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  498 (557)
                      +|+..+++++...|..    +.++..+|.++..  .|++++|+..|++++..+|.+...   .+.++...|++++|+..+
T Consensus       195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLS--LGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhcccccccccccHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            9999999988877643    6788999999999  999999999999999998876543   367788888888888877

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.92  E-value=1.4e-22  Score=190.29  Aligned_cols=237  Identities=19%  Similarity=0.216  Sum_probs=200.9

Q ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705          265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG  344 (557)
Q Consensus       265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  344 (557)
                      .|.++.+++.+|.++...|++++|+.+|+++++  |.                                  ++.+++.+|
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~----------------------------------~~~a~~~lg   45 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK----------------------------------ENSGCFNLG   45 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT----------------------------------CHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC----------------------------------CHHHHHHHH
Confidence            467888899999999999999999999999887  33                                  356777888


Q ss_pred             HHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          345 NYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       345 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      .+|..    .+++++|+.+|+++++.+  ++.+++.+|.++..    .+++++|+..|+++++.+  ++.+++.+|.+|.
T Consensus        46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  121 (273)
T 1ouv_A           46 VLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH  121 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH
Confidence            88888    999999999999998875  78899999999999    999999999999998874  7889999999999


Q ss_pred             H----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH---
Q 008705          417 M----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA---  487 (557)
Q Consensus       417 ~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---  487 (557)
                      .    .+++++|+.+|+++++..  ++.++..+|.++..+.  .+++++|+.+|+++++..  ++.+++.+|.+|..   
T Consensus       122 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~  197 (273)
T 1ouv_A          122 DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEG  197 (273)
T ss_dssp             HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCS
T ss_pred             cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC
Confidence            9    999999999999999875  6788889999887421  578999999999998874  57888999999999   


Q ss_pred             -cCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCchhhhh
Q 008705          488 -LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDYTGPVSFTHL  554 (557)
Q Consensus       488 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~a~  554 (557)
                       .+++++|+.+|+++++       ..+  +.+++.+|.++..    .|++++|..+|+++++.+|++....+
T Consensus       198 ~~~~~~~A~~~~~~a~~-------~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l  260 (273)
T 1ouv_A          198 ATKNFKEALARYSKACE-------LEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL  260 (273)
T ss_dssp             SCCCHHHHHHHHHHHHH-------TTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHh-------CCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence             9999999999999998       433  7788999999998    99999999999999999876654443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.92  E-value=1.4e-23  Score=211.16  Aligned_cols=314  Identities=14%  Similarity=0.068  Sum_probs=239.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh---HHHHH
Q 008705          180 YLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH---KESLT  256 (557)
Q Consensus       180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~---~~A~~  256 (557)
                      ..+|..+.+.|++++|+..|+++.+.  .+..++..|                         |.+|...|+.   ++|+.
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~L-------------------------g~~y~~~g~~~d~~~A~~   59 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGL-------------------------ADIQVGTRDPAQIKQAEA   59 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTC-------------------------C-----------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHH-------------------------HHHHHccCCCCCHHHHHH
Confidence            56899999999999999999999875  345555444                         8888888888   99999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhH---HHHHHHH
Q 008705          257 KYEYLQGTFSFSNYIQAQIAKAQYSLR-----EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSA---LSYLAHR  328 (557)
Q Consensus       257 ~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  328 (557)
                      .|+++++.   ++.+++.+|.+++..+     ++++|+.+|+++++.  .+..++..++.++...+....   +...+..
T Consensus        60 ~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~  134 (452)
T 3e4b_A           60 TYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ  134 (452)
T ss_dssp             --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred             HHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            99999876   6778999999777765     899999999999984  556799999999887665332   3333333


Q ss_pred             HHhhCCCChhHHHHHHHHHhhhCchHH----HHHHHHHHHhcCcCCHHHHHHHhHHHHhcC---CchHHHHHHHHHHhhC
Q 008705          329 VFMTDKYRPESCCIIGNYYSLKGQHEK----SVVYFRRALKLDKNYLSAWTLMGHEYVEMK---NTPAAIDAYRRAVDIN  401 (557)
Q Consensus       329 ~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~  401 (557)
                      +.  .+..+.+++.+|.+|...+.+++    +..+++.+...+|.   +++.+|.+|...|   ++++|+..|+++.+..
T Consensus       135 a~--~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g  209 (452)
T 3e4b_A          135 WQ--AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRG  209 (452)
T ss_dssp             HH--HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HH--HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence            22  23468899999999999885544    44555555554444   9999999999999   9999999999999999


Q ss_pred             CCChHHHHHHHHHHHHh----CChHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--hHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          402 PRDYRAWYGLGQAYEMM----HMPLYALHYFRKSVFLQPNDSRLWIAMAQC-Y--ETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       402 p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~--~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      |.....++.+|.+|...    +++++|+.+|+++.   |.++.+++.+|.+ +  ..  .+++++|+.+|+++.+.  .+
T Consensus       210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~~--g~  282 (452)
T 3e4b_A          210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE--LGDVEQMMKYLDNGRAA--DQ  282 (452)
T ss_dssp             CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG--GCCHHHHHHHHHHHHHT--TC
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHC--CC
Confidence            99999999999999766    79999999999998   8999999999999 4  45  89999999999999875  47


Q ss_pred             HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcc
Q 008705          475 AIALNQLAKLHHALG-----RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       475 ~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  545 (557)
                      +.+++++|.+|. .|     ++++|+.+|+++.          +.++.+++.||.+|..    ..++++|..+|+++.+.
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            899999999998 56     9999999999865          5678899999999987    44999999999999986


Q ss_pred             CCC
Q 008705          546 TGP  548 (557)
Q Consensus       546 ~~~  548 (557)
                      ..+
T Consensus       352 g~~  354 (452)
T 3e4b_A          352 GQN  354 (452)
T ss_dssp             TCT
T ss_pred             ChH
Confidence            543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=3.3e-23  Score=188.09  Aligned_cols=210  Identities=18%  Similarity=0.160  Sum_probs=198.4

Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      .|.++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-CChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705          413 QAYEMM-HMPLYALHYFRKSVF--LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG  489 (557)
Q Consensus       413 ~~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  489 (557)
                      .++... |++++|+.+++++++  ..|.+..++..+|.++..  .|++++|+.++++++...|.++.++..+|.++...|
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK--QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence            999999 999999999999999  667778999999999999  999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          490 RDEEAAFYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ++++|+.+++++++       ..| .++..+..++.++...|+.++|..+++.+.+.+|.+..
T Consensus       162 ~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  217 (225)
T 2vq2_A          162 QLGDADYYFKKYQS-------RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE  217 (225)
T ss_dssp             CHHHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999998       567 88888999999999999999999999999988866543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=5e-24  Score=215.84  Aligned_cols=212  Identities=15%  Similarity=0.166  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCch-HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH-EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      .+...+.......|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|..+|.+|...|++++|+..|+++++
T Consensus        86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  165 (474)
T 4abn_A           86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT  165 (474)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            333444445556667889999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHh---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc--------CcHHHHHH
Q 008705          400 INPRDYRAWYGLGQAYEMM---------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL--------HMLEEAIK  462 (557)
Q Consensus       400 ~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--------~~~~~A~~  462 (557)
                      ++|+ ..++..+|.++...         |++++|+..|+++++++|+++.+|..+|.++..  .        |++++|+.
T Consensus       166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALS  242 (474)
T ss_dssp             TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHH
T ss_pred             hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhhccccchHHHHHH
Confidence            9998 79999999999999         999999999999999999999999999999999  9        99999999


Q ss_pred             HHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705          463 CYRRAANCND---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC  539 (557)
Q Consensus       463 ~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  539 (557)
                      +|++++.++|   .++.+++++|.+|...|++++|+..|+++++       ..|+++.++..++.++...|++++|+..+
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA-------LDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999   8999999999999999999999999999999       68999999999999999999999999866


Q ss_pred             HHH
Q 008705          540 TRL  542 (557)
Q Consensus       540 ~~a  542 (557)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=7.4e-24  Score=214.60  Aligned_cols=217  Identities=18%  Similarity=0.205  Sum_probs=204.6

Q ss_pred             HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccH-HHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREF-EQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      .+.+++++..+++.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.                         
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-------------------------  135 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-------------------------  135 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-------------------------
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-------------------------
Confidence            45678889999999999999999999999999999999 9999999999999886                         


Q ss_pred             HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc---------CCchHHHHHHHHH
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM---------KNTPAAIDAYRRA  397 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a  397 (557)
                               ++.++..+|.+|...|++++|+.+|+++++++|+ ..++..+|.++...         |++++|+..|+++
T Consensus       136 ---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a  205 (474)
T 4abn_A          136 ---------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA  205 (474)
T ss_dssp             ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence                     4678888999999999999999999999999999 79999999999999         9999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHh--------CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705          398 VDINPRDYRAWYGLGQAYEMM--------HMPLYALHYFRKSVFLQP---NDSRLWIAMAQCYETEQLHMLEEAIKCYRR  466 (557)
Q Consensus       398 l~~~p~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~  466 (557)
                      ++++|++..+|+.+|.+|...        |++++|+.+|+++++++|   .++.+|..+|.++..  .|++++|+..|++
T Consensus       206 l~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~  283 (474)
T 4abn_A          206 VQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY--EESYGEALEGFSQ  283 (474)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence            999999999999999999999        999999999999999999   999999999999999  9999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD  501 (557)
Q Consensus       467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (557)
                      ++.++|+++.++..++.++...|++++|+..+.+.
T Consensus       284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999876553

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.91  E-value=6.5e-23  Score=189.92  Aligned_cols=209  Identities=20%  Similarity=0.155  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705          269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS  348 (557)
Q Consensus       269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  348 (557)
                      +.++..+|.++...|++++|+..|++++..+|.                                  .+.++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~la~~~~   82 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------------------------------SADAHAALAVVFQ   82 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------------------------------hHHHHHHHHHHHH
Confidence            556666777777777777777777777666554                                  3445566666666


Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD--INPRDYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                      ..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++.  ..|.+..++..+|.++...|++++|+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A           83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            677777777777777777776666777777777777777777777777766  566666667777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705          427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      +|+++++..|.++.++..+|.++..  .|++++|+.++++++...|.+..++..++.++...|++++|..+++++++   
T Consensus       163 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---  237 (252)
T 2ho1_A          163 YFEKSLRLNRNQPSVALEMADLLYK--EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR---  237 (252)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---
Confidence            7777777777777777777777777  77777777777777777777677777777777777777777777777766   


Q ss_pred             hhhcCCcchHHHHH
Q 008705          507 AEEREGPNMVEALI  520 (557)
Q Consensus       507 ~~~~~~~~~~~~~~  520 (557)
                          ..|+++.+..
T Consensus       238 ----~~p~~~~~~~  247 (252)
T 2ho1_A          238 ----LYPGSLEYQE  247 (252)
T ss_dssp             ----HCTTSHHHHH
T ss_pred             ----HCCCCHHHHH
Confidence                4555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=1.4e-22  Score=183.95  Aligned_cols=214  Identities=18%  Similarity=0.153  Sum_probs=160.3

Q ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705          265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG  344 (557)
Q Consensus       265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  344 (557)
                      .|.++.++..+|.++...|++++|+..|+++++.+|.                                  ++.++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------------------------~~~~~~~l~   49 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------------------------------NELAWLVRA   49 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------CHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------------------------------chHHHHHHH
Confidence            4556677777777777777777777777777777665                                  345666677


Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-CCchHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCh
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-KNTPAAIDAYRRAVD--INPRDYRAWYGLGQAYEMMHMP  421 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~  421 (557)
                      .++...|++++|+.+|++++..+|.+..++..+|.++... |++++|+..+++++.  ..|.+..++..+|.++...|++
T Consensus        50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  129 (225)
T 2vq2_A           50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF  129 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence            7777777777777777777777777777777777777777 777777777777777  5555567777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-SEAIALNQLAKLHHALGRDEEAAFYYKK  500 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (557)
                      ++|+.+|+++++..|.++.++..+|.++..  .|++++|+..+++++...| .++.++..++.++...|+.++|..+++.
T Consensus       130 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  207 (225)
T 2vq2_A          130 GLAEAYLKRSLAAQPQFPPAFKELARTKML--AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ  207 (225)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            777777777777777777777777777777  7777778777777777777 7777777777777777777777777777


Q ss_pred             HHHHHHhhhcCCcchHHHHHH
Q 008705          501 DLERMEAEEREGPNMVEALIF  521 (557)
Q Consensus       501 al~~~~~~~~~~~~~~~~~~~  521 (557)
                      +.+       ..|+++.+...
T Consensus       208 ~~~-------~~p~~~~~~~~  221 (225)
T 2vq2_A          208 LQA-------NFPYSEELQTV  221 (225)
T ss_dssp             HHH-------HCTTCHHHHHH
T ss_pred             HHH-------hCCCCHHHHHH
Confidence            766       45666655543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.91  E-value=1.9e-22  Score=192.66  Aligned_cols=230  Identities=11%  Similarity=0.072  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHh-c
Q 008705          193 NLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH-------KESLTKYEYLQG-T  264 (557)
Q Consensus       193 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~l~-~  264 (557)
                      ++|+..|++++..+|.+..+|..++.+....                  +..+...|++       ++|+..|++++. .
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~------------------~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~   94 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS------------------SKLLAEKGDMNNAKLFSDEAANIYERAISTL   94 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------chhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence            7899999999999999999999884433211                  1111234554       999999999999 6


Q ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh-HHHHH
Q 008705          265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE-SCCII  343 (557)
Q Consensus       265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  343 (557)
                      .|++..+|..+|.++...|++++|...|+++++..|.+                                  +. +|..+
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~~~  140 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----------------------------------PTLVYIQY  140 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----------------------------------THHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----------------------------------ccHHHHHH
Confidence            99999999999999999999999999999999988763                                  33 77788


Q ss_pred             HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705          344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE-MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      |.++...|++++|+..|+++++.+|....+|...+..... .|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus       141 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            8888899999999999999999999888888776666443 799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc---CC-CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          423 YALHYFRKSVFL---QP-NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       423 ~A~~~~~~a~~~---~p-~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      +|+..|++++..   .| ....+|..++..+..  .|++++|..+++++++..|++..
T Consensus       221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~--~g~~~~a~~~~~~a~~~~p~~~~  276 (308)
T 2ond_A          221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESN--IGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcccccc
Confidence            999999999995   45 367899999999998  99999999999999999997653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=1.7e-22  Score=184.15  Aligned_cols=185  Identities=18%  Similarity=0.140  Sum_probs=162.1

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc-CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK-NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      +.++..++.+|.++...|++++|+.+|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            34678888889999999999999999999998888 78888888999999999999999999999999998888899999


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--hHHHHHHHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDS-------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIALNQLAK  483 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~  483 (557)
                      .+|..+|++++|+..|+++++++|+++       .++..+|.++..  .|++++|+..|+++++++|+  ++.++..+|.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ--AGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH--hccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            999999999999999999999888888       568888888888  89999999999999998888  8888888888


Q ss_pred             HHHHcCCH---------------------------HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH
Q 008705          484 LHHALGRD---------------------------EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR  527 (557)
Q Consensus       484 ~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  527 (557)
                      ++...|+.                           ++|+.+|+++++       ..|+++.+...++.+..
T Consensus       162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT-------LSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHHH
Confidence            88888887                           899999999998       68999999888887754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.90  E-value=6.4e-22  Score=189.04  Aligned_cols=232  Identities=12%  Similarity=0.003  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCch-------HHHHH
Q 008705          286 EQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH-------EKSVV  358 (557)
Q Consensus       286 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~  358 (557)
                      ++|+..|++++..+|.+++.|..++.++...+.                           .+...|++       ++|+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~---------------------------~l~~~g~~~~~~~~~~~A~~   85 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK---------------------------LLAEKGDMNNAKLFSDEAAN   85 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------------HHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch---------------------------hhhhccchhhcccchHHHHH
Confidence            567777777777777655444444433321100                           01123554       78888


Q ss_pred             HHHHHHh-cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH-HHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          359 YFRRALK-LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR-AWYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       359 ~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      .|+++++ ++|++..+|..+|.++...|++++|+..|++++++.|.++. +|..+|.++...|++++|+..|+++++..|
T Consensus        86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A           86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            8888888 68888888888888888888888888888888888888776 788888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-ch
Q 008705          437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP-NM  515 (557)
Q Consensus       437 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~  515 (557)
                      .+..+|...+.+... ..|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+|++++...    ...| ..
T Consensus       166 ~~~~~~~~~a~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----~l~p~~~  240 (308)
T 2ond_A          166 TRHHVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----SLPPEKS  240 (308)
T ss_dssp             CCTHHHHHHHHHHHH-TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS----SSCGGGC
T ss_pred             CCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc----CCCHHHH
Confidence            777777766665432 15888888888888888888888888888888888888888888888888710    0134 35


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          516 VEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      ..+|..++.++...|++++|...++++++..|.+
T Consensus       241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence            6777888888888888888888888888877653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=1.4e-21  Score=183.41  Aligned_cols=237  Identities=17%  Similarity=0.185  Sum_probs=203.5

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH----
Q 008705          172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE----  247 (557)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~----  247 (557)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |.+..++..+                         |.++..    
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~l-------------------------g~~~~~g~~~   54 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNL-------------------------GVLYYQGQGV   54 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHH-------------------------HHHHHHTSSS
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHH-------------------------HHHHHcCCCc
Confidence            478899999999999999999999999999998  7777777655                         999999    


Q ss_pred             HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705          248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS  323 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  323 (557)
                      .+++++|+..|+++++..  ++.++..+|.++..    .+++++|+.+|+++++.+                        
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------  108 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------------  108 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------------
Confidence            999999999999999875  88999999999999    999999999999998753                        


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHH
Q 008705          324 YLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYR  395 (557)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~  395 (557)
                                  ++.++..+|.+|..    .+++++|+.+|+++++.+  +..++..+|.++..    .+++++|+..|+
T Consensus       109 ------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~  174 (273)
T 1ouv_A          109 ------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYD  174 (273)
T ss_dssp             ------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             ------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence                        35677888888888    899999999999998875  67888899999988    899999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHh
Q 008705          396 RAVDINPRDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       396 ~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~  469 (557)
                      ++++.+  ++.+++.+|.+|..    .+++++|+.+|+++++..|  +.++..+|.++..+  ..+++++|+.+|+++++
T Consensus       175 ~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          175 KACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence            998874  57888999999999    9999999999999998865  78888899888641  15788999999999999


Q ss_pred             cCCChHHHHH
Q 008705          470 CNDSEAIALN  479 (557)
Q Consensus       470 ~~p~~~~~~~  479 (557)
                      ..|.++....
T Consensus       251 ~~~~~a~~~l  260 (273)
T 1ouv_A          251 LGAKGACDIL  260 (273)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9887655443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.90  E-value=1.7e-22  Score=199.65  Aligned_cols=294  Identities=13%  Similarity=0.115  Sum_probs=218.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcC---CCCHHHHHH----HHHHHHhcccHHHHH-----------HHHHHHHHhCCCCC
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTF---SFSNYIQAQ----IAKAQYSLREFEQVE-----------VIFEELLRNDPYRV  303 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~----la~~~~~~g~~~~A~-----------~~~~~~l~~~p~~~  303 (557)
                      ....+..+++++|...++++.+..   ..+..+...    ..+.....++++.+.           ..++++-. .|...
T Consensus        19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~   97 (383)
T 3ulq_A           19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARL   97 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHH
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCc
Confidence            444556667777777666664422   123333311    122222334444444           44444322 22222


Q ss_pred             CcHH------HHHHHHHhccchhHHHHHHHHHHhh------CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--
Q 008705          304 DDMD------MYSNVLYAKECFSALSYLAHRVFMT------DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--  369 (557)
Q Consensus       304 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--  369 (557)
                      +.+.      ..+.++...++++++...+++++..      .+..+.++..+|.+|...|++++|+.++++++++.+.  
T Consensus        98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  177 (383)
T 3ulq_A           98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE  177 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred             hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence            2222      2556666677777777777776665      2225578899999999999999999999999988443  


Q ss_pred             -----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHh-----
Q 008705          370 -----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVF-----  433 (557)
Q Consensus       370 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----  433 (557)
                           ...++..+|.++...|++++|+..|++++++.+..      ..++.++|.+|..+|++++|+.+|+++++     
T Consensus       178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  257 (383)
T 3ulq_A          178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES  257 (383)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence                 34578999999999999999999999999886544      35899999999999999999999999999     


Q ss_pred             cC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 008705          434 LQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----DSEAIALNQLAKLHHALGR---DEEAAFYYKKDLER  504 (557)
Q Consensus       434 ~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  504 (557)
                      .+ |..+.++..+|.++..  .|++++|+.++++++.+.     |.....+..+|.++...|+   +++|+.++++.-  
T Consensus       258 ~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--  333 (383)
T 3ulq_A          258 NILPSLPQAYFLITQIHYK--LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--  333 (383)
T ss_dssp             TCGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--
T ss_pred             ccchhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--
Confidence            45 7778899999999999  999999999999999873     3334456789999999999   666666665541  


Q ss_pred             HHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          505 MEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       505 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                            ..+....++..+|.+|...|++++|..+|++++++.
T Consensus       334 ------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          334 ------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                  457778899999999999999999999999999874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=1.7e-22  Score=212.31  Aligned_cols=173  Identities=18%  Similarity=0.189  Sum_probs=167.7

Q ss_pred             hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                      ..|++++++..+|.+|...|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD  491 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  491 (557)
                      |.++..+|++++|+..|+++++++|+++.++.++|.++..  .|++++|+.+|+++++++|+++.++.++|.++..+|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~--~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD--SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            9999999999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 008705          492 EEAAFYYKKDLERME  506 (557)
Q Consensus       492 ~~A~~~~~~al~~~~  506 (557)
                      ++|.+.++++++...
T Consensus       162 ~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          162 TDYDERMKKLVSIVA  176 (723)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCh
Confidence            999999999998543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.90  E-value=7.4e-22  Score=195.00  Aligned_cols=238  Identities=11%  Similarity=-0.006  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 008705          237 KDYFLASAYQELRMHKESLTKYEYLQGT---FSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYS  310 (557)
Q Consensus       237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  310 (557)
                      ..+++|.++...|++++|+..|++++..   .++   ...++..+|.++...|++++|+..++++++..+......    
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----  180 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN----  180 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH----
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch----
Confidence            3456899999999999999999999886   233   457899999999999999999999999999876543211    


Q ss_pred             HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhc
Q 008705          311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEM  384 (557)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~  384 (557)
                                             +....++..+|.+|...|++++|+.+|++++++.+..      ..++..+|.+|...
T Consensus       181 -----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          181 -----------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -----------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence                                   1124577889999999999999999999999885543      25799999999999


Q ss_pred             CCchHHHHHHHHHHh-----hC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHhHHh
Q 008705          385 KNTPAAIDAYRRAVD-----IN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-----PNDSRLWIAMAQCYETEQ  453 (557)
Q Consensus       385 ~~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~~  453 (557)
                      |++++|+.+|+++++     .+ |....++..+|.++..+|++++|+.++++++.+.     |.....+..+|.++..  
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~--  315 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS--  315 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS--
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--
Confidence            999999999999999     46 7778899999999999999999999999999874     3333346779999999  


Q ss_pred             cCc---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          454 LHM---LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       454 ~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      .|+   +++|+..+++. ...|....++..+|.+|...|++++|..+|+++++.
T Consensus       316 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          316 GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            998   88888888877 344555678999999999999999999999999984

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.89  E-value=3.8e-20  Score=197.49  Aligned_cols=394  Identities=13%  Similarity=0.054  Sum_probs=281.7

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh-----HHHHHHHHhh---cccchHHHHHhhCCCCCchhhchhHHHHH
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF-----LRCYALYLAG---EKRKEEEMIELEGPLGKSNAVNRELISLE  162 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~-----l~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (557)
                      +..=...+.|...|++.+|+.+|++..-....|     +... ..+..   +.++..+.                     
T Consensus       986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl-Li~tAIkaD~~Rv~ey--------------------- 1043 (1630)
T 1xi4_A          986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL-LILTAIKADRTRVMEY--------------------- 1043 (1630)
T ss_pred             HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH-HHHHHHHhChhhHHHH---------------------
Confidence            455567899999999999999999987432211     1111 00000   11111111                     


Q ss_pred             HHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHH----HHhhhcHHHHhhcCCChhHHHH
Q 008705          163 RELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSEL----KSLCTSIDILNSLNLNNHWMKD  238 (557)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----~~~~~~~~~~~~l~~~~~~~~~  238 (557)
                        +.++.   .   ...-..|.++...|.+++|..+|+++-    .+..+...+    .+.....+....+..+.-   +
T Consensus      1044 --I~kLd---~---~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aervn~p~v---W 1108 (1630)
T 1xi4_A         1044 --INRLD---N---YDAPDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERCNEPAV---W 1108 (1630)
T ss_pred             --HHHhh---h---ccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhcCCHHH---H
Confidence              11111   1   112338999999999999999999974    223332222    223333333334444443   4


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      +.+|.++...|++++|+..|.++     +++..+..+|.++.+.|++++|+++|..+.+..+.. ..-..++..+...++
T Consensus      1109 sqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A         1109 SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNR 1182 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcC
Confidence            46799999999999999999886     788899999999999999999999999999988542 222247777777777


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                      .+.+..+.      ...+...+..+|..+...|++++|+.+|.++        ..|..+|.++..+|++++|++.++++.
T Consensus      1183 leele~fI------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A         1183 LAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred             HHHHHHHH------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            77655442      2234456778999999999999999999986        478899999999999999999999884


Q ss_pred             hhCC-------------------------CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705          399 DINP-------------------------RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ  453 (557)
Q Consensus       399 ~~~p-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  453 (557)
                      ...+                         .+++.+..++..|...|.+++|+.++++++.+++.+..++..+|.++.+..
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            4322                         123344566778888999999999999999999988889988888887755


Q ss_pred             cCcHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHhhhcCCcchHHHHHHHH
Q 008705          454 LHMLEEAIKCYRRAANCND-----SEAIALNQLAKLHHALGRDEEAAFYYKKDLER-----MEAEEREGPNMVEALIFLA  523 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~la  523 (557)
                      -++..++++.|...+.+.|     .+...|..+..+|.+-|+++.|+..+-.....     .-...-..+.++++++...
T Consensus      1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai 1408 (1630)
T 1xi4_A         1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 1408 (1630)
T ss_pred             HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHH
Confidence            6788889999998888776     67788999999999999999999544333220     0011113577899999999


Q ss_pred             HHHHHcC---------------CHHHHHHHHHH
Q 008705          524 THCRAHG---------------RFEEAEVYCTR  541 (557)
Q Consensus       524 ~~~~~~g---------------~~~~A~~~~~~  541 (557)
                      ..|...+               ++..+...|.+
T Consensus      1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A         1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred             HHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence            9998776               66666666663

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.89  E-value=9e-23  Score=214.31  Aligned_cols=174  Identities=20%  Similarity=0.244  Sum_probs=168.3

Q ss_pred             cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 008705          366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM  445 (557)
Q Consensus       366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  445 (557)
                      ..|+++.++.++|.++..+|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|+++.++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705          446 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH  525 (557)
Q Consensus       446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  525 (557)
                      |.++..  +|++++|+++|+++++++|+++.++.++|.+|..+|++++|+.+|+++++       .+|+++.++.++|.+
T Consensus        84 g~~l~~--~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-------l~P~~~~a~~~L~~~  154 (723)
T 4gyw_A           84 GNTLKE--MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK-------LKPDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHH
T ss_pred             HHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHhhhhhH
Confidence            999999  99999999999999999999999999999999999999999999999999       699999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCC
Q 008705          526 CRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       526 ~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      +..+|++++|.+.+++++++.|.
T Consensus       155 l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          155 LQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhChh
Confidence            99999999999999999987643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=7.6e-22  Score=179.79  Aligned_cols=208  Identities=10%  Similarity=0.101  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705          236 MKDYFLASAYQELRMHKESLTKYEYLQGTFS-FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY  314 (557)
Q Consensus       236 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  314 (557)
                      ...+.+|.++...|++++|+..|+++++..| .+..+++.+|.++...|++++|+..|+++++.+|.             
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------------   74 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-------------   74 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-------------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-------------
Confidence            4556677777778888888888888877777 77777777778888888888888887777777664             


Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-------HHHHHHhHHHHhcCCc
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-------SAWTLMGHEYVEMKNT  387 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~  387 (557)
                                           ++.++..+|.+|...|++++|+..|+++++.+|++.       .++..+|.++...|++
T Consensus        75 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  133 (228)
T 4i17_A           75 ---------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI  133 (228)
T ss_dssp             ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ---------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence                                 467788888888888999999999999988888887       5688888888888999


Q ss_pred             hHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHH
Q 008705          388 PAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR  465 (557)
Q Consensus       388 ~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~  465 (557)
                      ++|+..|+++++++|+  +..+++.+|.+|...|     ...++++..+.+.++..+.  +.....  .+.+++|+.+|+
T Consensus       134 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~--~~~~~~--~~~~~~A~~~~~  204 (228)
T 4i17_A          134 EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYA--SEKAKA--DAAFKKAVDYLG  204 (228)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHH--HHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHH--HHHHHH--HHHHHHHHHHHH
Confidence            9999999999888888  8888888888887654     4456777777766655443  334455  678899999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHH
Q 008705          466 RAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       466 ~al~~~p~~~~~~~~la~~~~  486 (557)
                      ++++++|+++.+...++.+..
T Consensus       205 ~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          205 EAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHhhcCCCCHHHHHHHHHHHH
Confidence            999999999999888887754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=194.15  Aligned_cols=249  Identities=14%  Similarity=0.107  Sum_probs=197.1

Q ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705          265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG  344 (557)
Q Consensus       265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  344 (557)
                      .|....++..+|.++...|++++|+.+|+++++......                          ....+..+.++..+|
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~~~~~~~la   76 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS--------------------------GHDHPDVATMLNILA   76 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------CSSSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--------------------------CCCCHHHHHHHHHHH
Confidence            556678899999999999999999999999987522100                          001223457788899


Q ss_pred             HHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--------CCChHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN--------PRDYRAW  408 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~  408 (557)
                      .++...|++++|+.+|++++..        .|....++..+|.++...|++++|+..+++++++.        |....++
T Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  156 (311)
T 3nf1_A           77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL  156 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            9999999999999999999987        46667889999999999999999999999999874        5557789


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC-------
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS-------  473 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~-------  473 (557)
                      ..+|.++...|++++|+.+|++++..        .|....++..+|.++..  .|++++|+.++++++...|.       
T Consensus       157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~  234 (311)
T 3nf1_A          157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK--QGKFKQAETLYKEILTRAHEREFGSVD  234 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999988        66667789999999999  99999999999999976432       


Q ss_pred             --------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          474 --------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       474 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                              ....+..++..+...+.+.+|...++++..       ..|..+.++..+|.++...|++++|..+|++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV-------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             ---CCHHHHHHHHHHC-------CCSCCCC----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC-------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                    123445555566677778888888888887       68999999999999999999999999999999998


Q ss_pred             CCC
Q 008705          546 TGP  548 (557)
Q Consensus       546 ~~~  548 (557)
                      .|.
T Consensus       308 ~~~  310 (311)
T 3nf1_A          308 RKQ  310 (311)
T ss_dssp             HC-
T ss_pred             hhc
Confidence            754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=6.1e-21  Score=187.99  Aligned_cols=238  Identities=12%  Similarity=0.105  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh
Q 008705          271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK  350 (557)
Q Consensus       271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  350 (557)
                      .++.+|..+...|++++|+..|++++...+...+                            .+..+.++..+|.+|...
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~a~~~~~lg~~y~~~  154 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD----------------------------DIEKAEFHFKVAEAYYHM  154 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC----------------------------hHHHHHHHHHHHHHHHHc
Confidence            5678899999999999999999999987553221                            112356788999999999


Q ss_pred             CchHHHHHHHHHHHhcCcC-------CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC------ChHHHHHHHHHHHH
Q 008705          351 GQHEKSVVYFRRALKLDKN-------YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR------DYRAWYGLGQAYEM  417 (557)
Q Consensus       351 g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~  417 (557)
                      |++++|+.++++++++.+.       ...++..+|.++...|++++|+..|++++++.+.      ...++.++|.+|..
T Consensus       155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  234 (378)
T 3q15_A          155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR  234 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999987543       2457889999999999999999999999986432      25678999999999


Q ss_pred             hCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHH
Q 008705          418 MHMPLYALHYFRKSVF-----LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----DSEAIALNQLAKLHHA  487 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~  487 (557)
                      +|++++|+.+|++++.     .+|..+.++..+|.++..  .|++++|+.++++++.+.     |.....+..++.++..
T Consensus       235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~  312 (378)
T 3q15_A          235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK--AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE  312 (378)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999     778888999999999999  999999999999999974     3445567788889988


Q ss_pred             cCC---HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          488 LGR---DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       488 ~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      .|+   +.+|+.++++.-        ..+....++..+|.+|...|++++|..+|++++++.
T Consensus       313 ~~~~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          313 TVDERKIHDLLSYFEKKN--------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             SCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            888   667776666521        356677888999999999999999999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.87  E-value=1.1e-19  Score=170.08  Aligned_cols=242  Identities=11%  Similarity=0.027  Sum_probs=210.7

Q ss_pred             HHHHHHHhhh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          242 ASAYQELRMH-KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR--EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       242 a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      .......|.+ ++|+..+.+++.++|++..+|..++.++...|  ++++++..+..++..+|.+..+|..          
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~----------  108 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY----------  108 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH----------
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH----------
Confidence            3344555555 68999999999999999999999999999999  9999999999999999986555444          


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHH----hhh---CchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch--H
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYY----SLK---GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP--A  389 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~  389 (557)
                                              .+.++    ...   +++++++.++.++++.+|.+..+|...+.+....|.++  +
T Consensus       109 ------------------------R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~  164 (306)
T 3dra_A          109 ------------------------RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAK  164 (306)
T ss_dssp             ------------------------HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHH
T ss_pred             ------------------------HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHH
Confidence                                    44444    333   68899999999999999999999999999999999998  9


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCC------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH-HHH
Q 008705          390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHM------PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE-AIK  462 (557)
Q Consensus       390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~-A~~  462 (557)
                      +++++.++++.+|.+..+|...+.+....+.      +++++.++.+++..+|.+..+|+.++.++..  .|+..+ ...
T Consensus       165 EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~--~~~~~~~~~~  242 (306)
T 3dra_A          165 ELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER--FDRSITQLEE  242 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH--TTCCGGGGHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh--cCCChHHHHH
Confidence            9999999999999999999999999999887      8999999999999999999999999999998  888555 455


Q ss_pred             HHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705          463 CYRRAANCN---DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH  525 (557)
Q Consensus       463 ~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  525 (557)
                      ++.+++.++   |.++.++..+|.++.+.|+.++|+++|+.+.+.      .+|.....|...+..
T Consensus       243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~------~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK------YNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCGGGHHHHHHHHHT
T ss_pred             HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc------cChHHHHHHHHHHhh
Confidence            777777766   788899999999999999999999999998862      589888888877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=5.9e-21  Score=177.78  Aligned_cols=197  Identities=18%  Similarity=0.159  Sum_probs=177.1

Q ss_pred             hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---
Q 008705          331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---  404 (557)
Q Consensus       331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---  404 (557)
                      ...+.++..++.+|..+...|++++|+..|+++++.+|.+   ..+++.+|.++...|++++|+..|++++..+|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            4567789999999999999999999999999999999998   8999999999999999999999999999998865   


Q ss_pred             hHHHHHHHHHHHH--------hCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHhHHhcCcHHH
Q 008705          405 YRAWYGLGQAYEM--------MHMPLYALHYFRKSVFLQPNDSRLW-----------------IAMAQCYETEQLHMLEE  459 (557)
Q Consensus       405 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~  459 (557)
                      ..+++.+|.++..        .|++++|+..|+++++..|+++.+.                 +.+|.++..  .|++++
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~  166 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER--RELYEA  166 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHH
Confidence            6789999999999        9999999999999999999986655                 888999999  999999


Q ss_pred             HHHHHHHHHhcCCC---hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhhhcCCcch---HHHHHHHH
Q 008705          460 AIKCYRRAANCNDS---EAIALNQLAKLHHAL----------GRDEEAAFYYKKDLERMEAEEREGPNM---VEALIFLA  523 (557)
Q Consensus       460 A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~la  523 (557)
                      |+..|++++...|+   .+.+++.+|.+|..+          |++++|+..|+++++       ..|++   ..+...++
T Consensus       167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~a~~~l~  239 (261)
T 3qky_A          167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ-------IFPDSPLLRTAEELYT  239 (261)
T ss_dssp             HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH-------HCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH-------HCCCChHHHHHHHHHH
Confidence            99999999999988   577999999999977          899999999999999       45555   56777788


Q ss_pred             HHHHHcCCHHHHH
Q 008705          524 THCRAHGRFEEAE  536 (557)
Q Consensus       524 ~~~~~~g~~~~A~  536 (557)
                      .++...|+++++.
T Consensus       240 ~~~~~~~~~~~~~  252 (261)
T 3qky_A          240 RARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHTCT
T ss_pred             HHHHHHHHhhhhh
Confidence            8888887776544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.87  E-value=6.4e-22  Score=189.13  Aligned_cols=249  Identities=11%  Similarity=0.022  Sum_probs=174.1

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHH
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNS--------YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLA  242 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la  242 (557)
                      ..|..+.+++.+|.++...|++++|+..|+++++.        .|....++                         ..+|
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~la   76 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML-------------------------NILA   76 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHH-------------------------HHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-------------------------HHHH
Confidence            45777889999999999999999999999999984        33333333                         4459


Q ss_pred             HHHHHHhhhHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705          243 SAYQELRMHKESLTKYEYLQGTF--------SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY  314 (557)
Q Consensus       243 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  314 (557)
                      .++...|++++|+..+++++...        |....++..+|.++...|++++|+.+|+++++.....            
T Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------  144 (311)
T 3nf1_A           77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------  144 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------
Confidence            99999999999999999999873        5567789999999999999999999999998764100            


Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCC
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKN  386 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~  386 (557)
                                    .....+....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|+
T Consensus       145 --------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  210 (311)
T 3nf1_A          145 --------------LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK  210 (311)
T ss_dssp             --------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             --------------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence                          00011224567788999999999999999999999988        66677788899999999999


Q ss_pred             chHHHHHHHHHHhhCCC---------Ch------HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          387 TPAAIDAYRRAVDINPR---------DY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       387 ~~~A~~~~~~al~~~p~---------~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      +++|+..+++++...|.         ..      ..+..++..+...+.+.+|+..++++....|..+.++..+|.++..
T Consensus       211 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~  290 (311)
T 3nf1_A          211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR  290 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH
Confidence            99999999998875432         11      2222333333444445555555555555555555555556666655


Q ss_pred             HhcCcHHHHHHHHHHHHhcCC
Q 008705          452 EQLHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p  472 (557)
                        .|++++|+.+|++++++.|
T Consensus       291 --~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          291 --QGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             --HTCHHHHHHHHHHHHHHHC
T ss_pred             --CCCHHHHHHHHHHHHHHhh
Confidence              5666666666655555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=1.8e-20  Score=174.54  Aligned_cols=192  Identities=14%  Similarity=0.100  Sum_probs=138.5

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---HHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705          171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN---WNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE  247 (557)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~  247 (557)
                      ..|.++..++.+|..+...|++++|+..|+++++.+|.+   ..++..+                         |.++..
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l-------------------------g~~~~~   64 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYL-------------------------ARAYYQ   64 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHH-------------------------HHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHH-------------------------HHHHHH
Confidence            358889999999999999999999999999999999998   6666555                         999999


Q ss_pred             HhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHh--------cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705          248 LRMHKESLTKYEYLQGTFSFS---NYIQAQIAKAQYS--------LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK  316 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  316 (557)
                      .|++++|+..|+++++.+|++   +.+++.+|.++..        .|++++|+..|+++++.+|++..+...+..+....
T Consensus        65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence            999999999999999998854   6789999999999        99999999999999999998765544433221111


Q ss_pred             cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC---CHHHHHHHhHHHHhc---------
Q 008705          317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN---YLSAWTLMGHEYVEM---------  384 (557)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~---------  384 (557)
                      +.                 ....++.+|.+|...|++++|+..|+++++..|+   ...+++.+|.++..+         
T Consensus       145 ~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~  207 (261)
T 3qky_A          145 AK-----------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQ  207 (261)
T ss_dssp             HH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred             HH-----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcc
Confidence            10                 1122445555555555555555555555555554   234555555555544         


Q ss_pred             -CCchHHHHHHHHHHhhCCCC
Q 008705          385 -KNTPAAIDAYRRAVDINPRD  404 (557)
Q Consensus       385 -~~~~~A~~~~~~al~~~p~~  404 (557)
                       |++++|+..|+++++.+|++
T Consensus       208 ~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          208 PERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHHHHHHCCCC
Confidence             44455555555555555544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=7.7e-21  Score=200.97  Aligned_cols=205  Identities=9%  Similarity=-0.107  Sum_probs=178.1

Q ss_pred             hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH--------HhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC
Q 008705          263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL--------RNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK  334 (557)
Q Consensus       263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (557)
                      ..+|+++.+.+..+   ...|++++|+..|++++        +.+|                                  
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p----------------------------------  430 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS----------------------------------  430 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT----------------------------------
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc----------------------------------
Confidence            45788887777766   78899999999999998        5545                                  


Q ss_pred             CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      .+++++..+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++++|.+
T Consensus       431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  510 (681)
T 2pzi_A          431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAAT  510 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            46778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      +..+|++++ +..|+++++++|+++.+++++|.++..  .|++++|+..|+++++++|++..++.++|.++...++.+++
T Consensus       511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~  587 (681)
T 2pzi_A          511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA--EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEV  587 (681)
T ss_dssp             HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred             HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH--cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence            999999999 999999999999999999999999999  99999999999999999999999999999999887775555


Q ss_pred             -HHHHHHHHHHHHh
Q 008705          495 -AFYYKKDLERMEA  507 (557)
Q Consensus       495 -~~~~~~al~~~~~  507 (557)
                       ...++++++.+..
T Consensus       588 ~~~~~~~A~~~l~~  601 (681)
T 2pzi_A          588 TEEQIRDAARRVEA  601 (681)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhh
Confidence             5666666665544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.86  E-value=1.2e-19  Score=169.71  Aligned_cols=221  Identities=10%  Similarity=0.033  Sum_probs=193.3

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHhhhC--chHHHHHHHHHHHhcCcCCHHHHHHHhHHH----Hhc---CCchHHHH
Q 008705          322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKG--QHEKSVVYFRRALKLDKNYLSAWTLMGHEY----VEM---KNTPAAID  392 (557)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----~~~---~~~~~A~~  392 (557)
                      +..+...++..+|....+|...+.++...|  ++++++.++.+++..+|++..+|...+.++    ...   +++++++.
T Consensus        52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            333334444444456778888888888888  999999999999999999999999999999    667   78999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCChH--HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc------HHHHHHHH
Q 008705          393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPL--YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM------LEEAIKCY  464 (557)
Q Consensus       393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~------~~~A~~~~  464 (557)
                      ++.++++.+|++..+|...+.+....|.++  +++.++.++++.+|.+..+|...+.++..  .+.      ++++++++
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~--l~~~~~~~~~~eEl~~~  209 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS--KKHLATDNTIDEELNYV  209 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS--SGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccchhhhHHHHHHHH
Confidence            999999999999999999999999999999  99999999999999999999999999998  887      99999999


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          465 RRAANCNDSEAIALNQLAKLHHALGRDEEAA-FYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      .+++..+|.+..+|+.++.++...|+..+++ .+++++++. .   ...+.++.++..+|.++.+.|+.++|+++|+.+.
T Consensus       210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-~---~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL-E---KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG-G---GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc-c---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            9999999999999999999999999865544 455555541 0   1237889999999999999999999999999999


Q ss_pred             c-cCCC
Q 008705          544 D-YTGP  548 (557)
Q Consensus       544 ~-~~~~  548 (557)
                      + .+|.
T Consensus       286 ~~~Dpi  291 (306)
T 3dra_A          286 SKYNPI  291 (306)
T ss_dssp             HTTCGG
T ss_pred             hccChH
Confidence            6 6754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.86  E-value=6.5e-20  Score=180.63  Aligned_cols=238  Identities=13%  Similarity=0.124  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 008705          237 KDYFLASAYQELRMHKESLTKYEYLQGTFS------FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYS  310 (557)
Q Consensus       237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  310 (557)
                      ..+++|..+...|++++|+..|++++...+      ....++..+|.++...|+++.|+..+++++...+.......   
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~---  179 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI---  179 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh---
Confidence            456789999999999999999999987632      24568899999999999999999999999998765432111   


Q ss_pred             HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC------CHHHHHHHhHHHHhc
Q 008705          311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN------YLSAWTLMGHEYVEM  384 (557)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~  384 (557)
                                              ..+.++..+|.+|...|++++|+.+|++++++.+.      ...++..+|.++...
T Consensus       180 ------------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  235 (378)
T 3q15_A          180 ------------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS  235 (378)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence                                    12457788999999999999999999999987431      246788999999999


Q ss_pred             CCchHHHHHHHHHHh-----hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHhHHhc
Q 008705          385 KNTPAAIDAYRRAVD-----INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP-----NDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       385 ~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~  454 (557)
                      |++++|+.+|++++.     .+|....++..+|.++..+|++++|+.++++++.+.+     .....+..++.++..  .
T Consensus       236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~--~  313 (378)
T 3q15_A          236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE--T  313 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS--S
T ss_pred             CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--C
Confidence            999999999999999     7787889999999999999999999999999999853     334566778888888  8


Q ss_pred             Cc---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          455 HM---LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       455 ~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      ++   +.+|+..+++. ...|....++..+|.+|...|++++|..+|+++++.
T Consensus       314 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          314 VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            88   88898888873 333455668889999999999999999999999984

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.86  E-value=3.2e-19  Score=175.42  Aligned_cols=278  Identities=11%  Similarity=-0.047  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSN-----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNV  312 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  312 (557)
                      ...+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++...|.......     
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----   91 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-----   91 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence            34568899999999999999999998877542     25778899999999999999999999987664322110     


Q ss_pred             HHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC--------cCCHHHHHHHhHHHHhc
Q 008705          313 LYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD--------KNYLSAWTLMGHEYVEM  384 (557)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~  384 (557)
                                             ...++..+|.++...|++++|+.++++++...        |....++..+|.++...
T Consensus        92 -----------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  148 (373)
T 1hz4_A           92 -----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW  148 (373)
T ss_dssp             -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred             -----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence                                   12346678999999999999999999998864        23445677899999999


Q ss_pred             CCchHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CCHHHHH-----HHHHHHhHH
Q 008705          385 KNTPAAIDAYRRAVDINPRD-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--NDSRLWI-----AMAQCYETE  452 (557)
Q Consensus       385 ~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~-----~l~~~~~~~  452 (557)
                      |++++|...+++++...+..     ..++..+|.++...|++++|..++++++.+.+  ..+..+.     ..+.++.. 
T Consensus       149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  227 (373)
T 1hz4_A          149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-  227 (373)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-
T ss_pred             cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH-
Confidence            99999999999999887653     45688899999999999999999999987632  2211221     34455778 


Q ss_pred             hcCcHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705          453 QLHMLEEAIKCYRRAANCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA  528 (557)
Q Consensus       453 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  528 (557)
                       .|++++|...+++++...|..    ...+..+|.++...|++++|...+++++......+ ..+....++..+|.++..
T Consensus       228 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~la~~~~~  305 (373)
T 1hz4_A          228 -TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQ  305 (373)
T ss_dssp             -TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHH
Confidence             999999999999998876543    33567889999999999999999999988543311 122344588889999999


Q ss_pred             cCCHHHHHHHHHHHhccC
Q 008705          529 HGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       529 ~g~~~~A~~~~~~al~~~  546 (557)
                      .|++++|...+++++.+.
T Consensus       306 ~g~~~~A~~~l~~al~~~  323 (373)
T 1hz4_A          306 AGRKSDAQRVLLDALKLA  323 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHh
Confidence            999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.86  E-value=1.9e-21  Score=164.13  Aligned_cols=146  Identities=19%  Similarity=0.181  Sum_probs=136.2

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      ||.++...|++++|+..+++++..+|.++.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH-HHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705          423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC-YRRAANCNDSEAIALNQLAKLHHALGR  490 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~  490 (557)
                      +|+..|+++++++|+++.++..+|.++..  .|++++|... ++++++++|+++.++..++.++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCK--NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999  9999887765 599999999999999999999988885

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=5.1e-21  Score=202.35  Aligned_cols=188  Identities=14%  Similarity=0.014  Sum_probs=177.1

Q ss_pred             hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHH--------hcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC
Q 008705          331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRAL--------KLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP  402 (557)
Q Consensus       331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  402 (557)
                      ..+|.++..++..+   ...|++++|+..|++++        +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            45778888888777   78999999999999999        89999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705          403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA  482 (557)
Q Consensus       403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  482 (557)
                      ++..+|+.+|.++..+|++++|+..|+++++++|+++.++.++|.++..  .|++++ +..|+++++++|+++.+++++|
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~--~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL--AGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH--HTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999  999999 9999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705          483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  531 (557)
                      .++..+|++++|+..|+++++       .+|++..+++++|.++...|+
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPP-------TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCT-------TSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHcCCHHHHHHHHHhhcc-------cCcccHHHHHHHHHHHHccCC
Confidence            999999999999999999999       799999999999999987665

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.85  E-value=1.1e-18  Score=171.63  Aligned_cols=311  Identities=12%  Similarity=0.028  Sum_probs=237.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      +.++..+|.++...|++++|+..+++++...|........                    .....+|.++...|++++|+
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~A~   73 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI--------------------VATSVLGEVLHCKGELTRSL   73 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHH--------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHH--------------------HHHHHHHHHHHhcCcHHHHH
Confidence            4577889999999999999999999999988765321110                    12245699999999999999


Q ss_pred             HHHHHHHhcCCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705          256 TKYEYLQGTFSFS------NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV  329 (557)
Q Consensus       256 ~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (557)
                      ..+++++...|..      ..++..+|.++...|++++|+..+++++...+.....                        
T Consensus        74 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------------------  129 (373)
T 1hz4_A           74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE------------------------  129 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------------
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------------------
Confidence            9999998865432      2346789999999999999999999999875421100                        


Q ss_pred             HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC-
Q 008705          330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR-  403 (557)
Q Consensus       330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-  403 (557)
                        ..|....++..+|.++...|++++|..++++++...+.     ...++..+|.++...|++++|+..+++++.+.+. 
T Consensus       130 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~  207 (373)
T 1hz4_A          130 --QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG  207 (373)
T ss_dssp             --TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             --cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence              00123456677999999999999999999999988764     3467889999999999999999999999986332 


Q ss_pred             -ChHHHH-----HHHHHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          404 -DYRAWY-----GLGQAYEMMHMPLYALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       404 -~~~~~~-----~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                       ....+.     .++.++...|++++|..++++++...|..    ...+..+|.++..  .|++++|+..+++++...+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~l~~a~~~~~~  285 (373)
T 1hz4_A          208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--LGEFEPAEIVLEELNENARS  285 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHh
Confidence             222222     34456889999999999999999877653    3357889999999  99999999999999876432


Q ss_pred             ------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705          474 ------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       474 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  547 (557)
                            ...++..+|.++...|++++|...+++++......+            ....+...|  +.....+++++...|
T Consensus       286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g------------~~~~~~~~g--~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG------------FISHFVIEG--EAMAQQLRQLIQLNT  351 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC------------CCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred             CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc------------HHHHHHHcc--HHHHHHHHHHHhCCC
Confidence                  234888899999999999999999999998533211            112222333  455666666666655


Q ss_pred             C
Q 008705          548 P  548 (557)
Q Consensus       548 ~  548 (557)
                      .
T Consensus       352 ~  352 (373)
T 1hz4_A          352 L  352 (373)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.84  E-value=3.4e-20  Score=165.98  Aligned_cols=165  Identities=15%  Similarity=0.100  Sum_probs=124.3

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH----------------HhHHHHhcCCchHHHHHHHHHHh
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL----------------MGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      .++.++..|..+...|++++|+.+|++++..+|+++.+|+.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677888888888999999999999999999988888888                77777788888888888888888


Q ss_pred             hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc--HHHHHHHHHHHHhcCCChHHH
Q 008705          400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM--LEEAIKCYRRAANCNDSEAIA  477 (557)
Q Consensus       400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~  477 (557)
                      ++|++..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..  .|+  ...+...+++++...| ...+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~a  159 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL--TAEQEKKKLETDYKKLSSPTK-MQYA  159 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HHHHHHHHHHHHHC---CCCH-HHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCCCc-hhHH
Confidence            8887777777888888888888888888888888888777777777777765  443  4455666666654322 2335


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ++.+|.++...|++++|+.+|+++++
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            66677777777777777777777777

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=5.1e-20  Score=174.25  Aligned_cols=216  Identities=10%  Similarity=-0.013  Sum_probs=174.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSF------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA  315 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  315 (557)
                      |.+|...|++++|+..|++++.+.+.      ...++..+|.++...|++++|+.+|++++.+.|....           
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----------  112 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----------  112 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----------
Confidence            55677899999999999999987432      2568899999999999999999999999997654211           


Q ss_pred             ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh-CchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCch
Q 008705          316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK-GQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTP  388 (557)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~  388 (557)
                         ...              ...++..+|.+|... |++++|+.+|++++++.|..      ..++..+|.++..+|+++
T Consensus       113 ---~~~--------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A          113 ---FRR--------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             ---HHH--------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---HHH--------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence               111              135677899999996 99999999999999998754      467889999999999999


Q ss_pred             HHHHHHHHHHhhCCCChH-------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHhHHhcCc
Q 008705          389 AAIDAYRRAVDINPRDYR-------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR-----LWIAMAQCYETEQLHM  456 (557)
Q Consensus       389 ~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~l~~~~~~~~~~~  456 (557)
                      +|+..|++++.+.|++..       ++..+|.++..+|++++|+.+|+++++++|....     .+..++..+..+..++
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999987643       6789999999999999999999999999998655     3455666665222678


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          457 LEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                      +++|+..|++++.++|....++..+-...
T Consensus       256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          256 LSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            99999999999999998777766665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=5.6e-20  Score=173.98  Aligned_cols=226  Identities=10%  Similarity=0.005  Sum_probs=184.1

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705          250 MHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV  329 (557)
Q Consensus       250 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (557)
                      ++++|+..|+++              |.++...|++++|+..|.+++.+.+...+              .          
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~----------   73 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGN--------------E----------   73 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTC--------------H----------
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------------H----------
Confidence            589999999987              56788899999999999999987543211              0          


Q ss_pred             HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhc-CCchHHHHHHHHHHhhCC
Q 008705          330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEM-KNTPAAIDAYRRAVDINP  402 (557)
Q Consensus       330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p  402 (557)
                          +..+.++..+|.+|...|++++|+.+|++++.+.|..      ..++..+|.+|... |++++|+.+|++++++.|
T Consensus        74 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~  149 (292)
T 1qqe_A           74 ----DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (292)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence                0124678889999999999999999999999987653      46789999999996 999999999999999987


Q ss_pred             CC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705          403 RD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR-------LWIAMAQCYETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       403 ~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~~~~~~~~A~~~~~~al~  469 (557)
                      .+      ..++..+|.++..+|++++|+.+|++++.+.|++..       .+..+|.++..  +|++++|+.+|++++.
T Consensus       150 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA--ATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHGGGC
T ss_pred             hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Confidence            54      567899999999999999999999999999987643       67899999999  9999999999999999


Q ss_pred             cCCChHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH
Q 008705          470 CNDSEAI-----ALNQLAKLHH--ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC  526 (557)
Q Consensus       470 ~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  526 (557)
                      ++|....     .+..++..+.  ..+++++|+..|++++.       .+|....++..+-...
T Consensus       228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~-------l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR-------LDKWKITILNKIKESI  284 (292)
T ss_dssp             C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC-------CCHHHHHHHHHHHHHH
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc-------cHHHHHHHHHHHHHHh
Confidence            9998654     3455666664  45679999999988877       7787777766665544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=8.7e-18  Score=179.62  Aligned_cols=319  Identities=12%  Similarity=0.027  Sum_probs=187.0

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC----CHHHHHHHHH--hhhcHHH----HhhcCCChhHHHHHHHH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW----NWNAWSELKS--LCTSIDI----LNSLNLNNHWMKDYFLA  242 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~l~~--~~~~~~~----~~~l~~~~~~~~~~~la  242 (557)
                      ..+|.---.....|...|.+.+|++.|++++ ..|.    +...-..++.  +......    +..+.   ... .--+|
T Consensus       982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd---~~d-~~eIA 1056 (1630)
T 1xi4_A          982 TQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD---NYD-APDIA 1056 (1630)
T ss_pred             ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh---hcc-HHHHH
Confidence            5566666777888889999999999999999 4554    2211111221  1111111    11111   000 11158


Q ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705          243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL  322 (557)
Q Consensus       243 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  322 (557)
                      .++...|.+++|..+|+++-    ..   ...+...+...|++++|.++++++     +.+.+|..++..+...|+++++
T Consensus      1057 ~Iai~lglyEEAf~IYkKa~----~~---~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A         1057 NIAISNELFEEAFAIFRKFD----VN---TSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHcC----CH---HHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHH
Confidence            88888888888888888862    11   111122233666677777766654     3456666777777777777777


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC
Q 008705          323 SYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP  402 (557)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  402 (557)
                      ...+.++     .++..+..+|.++...|++++|+++|..+.+..+. +.+-..+|.+|.+.+++++ ++.|.     ..
T Consensus      1125 IdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~ 1192 (1630)
T 1xi4_A         1125 IDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NG 1192 (1630)
T ss_pred             HHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hC
Confidence            6666543     56666777777777777777777777776665533 2222346666666666653 33331     12


Q ss_pred             CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705          403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA  482 (557)
Q Consensus       403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  482 (557)
                      .+...+..+|..+...|++++|+.+|.++        ..|..+|.++.+  +|++++|+++++++     .+..+|...+
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk--Lge~q~AIEaarKA-----~n~~aWkev~ 1257 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH--LGEYQAAVDGARKA-----NSTRTWKEVC 1257 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH--hCCHHHHHHHHHHh-----CCHHHHHHHH
Confidence            23345556666666677777777666664        356666666666  66677777666666     3345555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      .++...|++..|..+... +.          .+++.+..++.+|...|.+++|+.++++++.++
T Consensus      1258 ~acve~~Ef~LA~~cgl~-Ii----------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLH-IV----------VHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHh-hh----------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            555555555555555443 21          123334456666666666666666666666655

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.84  E-value=4e-21  Score=185.00  Aligned_cols=314  Identities=12%  Similarity=0.060  Sum_probs=175.2

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      +++.+|..+|.++.+.|++++|++.|.++     .+..++..+                         +..+...|++++
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V-------------------------~~~ae~~g~~Ee   79 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV-------------------------VQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHH-------------------------HHHHHhCCCHHH
Confidence            44569999999999999999999999874     234445444                         778888999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705          254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD  333 (557)
Q Consensus       254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (557)
                      |+.+++.+.+..+ ++.+...++.+|.+.|++.++.++++.     |+ ..++..+|..++..|.++++..++..+    
T Consensus        80 Ai~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           80 LVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             ------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            9999999887544 377888999999999999999988852     43 458999999999999999999999875    


Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                          ..|..+|.++...|++++|++.++++     +++.+|...+.++...|+++.|..+... +..+|+   -...++.
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~  215 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELIN  215 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHH
Confidence                58889999999999999999999999     4789999999999999999999887775 334444   3456889


Q ss_pred             HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHc
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-----SEAIALNQLAKLHHAL  488 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~  488 (557)
                      .|.+.|++++|+.++++++.+++....+|..+|.+|.+...++..+.++.|...+.+.|     .++..|..+..+|...
T Consensus       216 ~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~  295 (449)
T 1b89_A          216 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  295 (449)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999987557788889998888887777     6778899999999999


Q ss_pred             CCHHHHHHHHHHHHHH-----HHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705          489 GRDEEAAFYYKKDLER-----MEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL  543 (557)
Q Consensus       489 g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  543 (557)
                      ++++.|+..+-.....     .-+..-..+.+.++++.....|.  +....++..+..++
T Consensus       296 ~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l  353 (449)
T 1b89_A          296 EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL  353 (449)
T ss_dssp             TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred             chHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence            9999998765443210     00000013556777877777776  33444455555555

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.84  E-value=1.1e-19  Score=162.60  Aligned_cols=178  Identities=13%  Similarity=0.054  Sum_probs=154.1

Q ss_pred             CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH----------------HHHHHhhhCchHHHHHHHHHHHhc
Q 008705          303 VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI----------------IGNYYSLKGQHEKSVVYFRRALKL  366 (557)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~  366 (557)
                      .+.+...+..+...++++++...+.+++..+|.++.+++.                +|.+|...|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3456677888999999999999999999999999999999                999999999999999999999999


Q ss_pred             CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC--hHHHHHHHHHHHhcCCCCHHHHHH
Q 008705          367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM--PLYALHYFRKSVFLQPNDSRLWIA  444 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~  444 (557)
                      +|++..++..+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...|+  ...+...|++++...|. ...++.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~  162 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR  162 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence            999999999999999999999999999999999999999999999999987764  45677788877653332 346788


Q ss_pred             HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705          445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  484 (557)
                      +|.++..  .|++++|+.+|++++++.|+.. +...+..+
T Consensus       163 ~g~~~~~--~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i  199 (208)
T 3urz_A          163 DGLSKLF--TTRYEKARNSLQKVILRFPSTE-AQKTLDKI  199 (208)
T ss_dssp             HHHHHHH--HHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred             HHHHHHH--ccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence            9999999  9999999999999999999753 33334443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=1.4e-19  Score=158.46  Aligned_cols=165  Identities=18%  Similarity=0.183  Sum_probs=105.4

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      ...+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF  496 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  496 (557)
                      ..|++++|+.++++++...|.++.++..+|.++..  .|++++|+.++++++...|.++.++..+|.++...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN--LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH--cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666666666666666666666666666  6666666666666666666666666666666666666666666


Q ss_pred             HHHHHHH
Q 008705          497 YYKKDLE  503 (557)
Q Consensus       497 ~~~~al~  503 (557)
                      +++++++
T Consensus       166 ~~~~~~~  172 (186)
T 3as5_A          166 HFKKANE  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=1.6e-19  Score=158.02  Aligned_cols=170  Identities=19%  Similarity=0.289  Sum_probs=163.2

Q ss_pred             CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705          304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE  383 (557)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  383 (557)
                      ..+..++.++...++++++...+.+++...|.++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~  463 (557)
                      .|++++|+..+++++..+|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++..  .|++++|+.+
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~  166 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ--MGRHEEALPH  166 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--cCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHHhcCCChH
Q 008705          464 YRRAANCNDSEA  475 (557)
Q Consensus       464 ~~~al~~~p~~~  475 (557)
                      +++++...|++.
T Consensus       167 ~~~~~~~~~~~~  178 (186)
T 3as5_A          167 FKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHcCCCch
Confidence            999999887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.83  E-value=8.5e-21  Score=160.06  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=136.4

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  455 (557)
                      .||.++...|++++|+..+++++..+|.++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++..  .|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~~   79 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL--EE   79 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cC
Confidence            4788888999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705          456 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY-YKKDLERMEAEEREGPNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       456 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  531 (557)
                      ++++|+.+|+++++++|+++.++..+|.++...|++++|... ++++++       .+|+++.++..++.++...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-------l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-------LFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------hCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999887765 599999       689999999999999998885

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.82  E-value=5.4e-17  Score=168.47  Aligned_cols=371  Identities=10%  Similarity=-0.005  Sum_probs=242.8

Q ss_pred             HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH---H---hh-----cC-C-
Q 008705          165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI---L---NS-----LN-L-  231 (557)
Q Consensus       165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~---~---~~-----l~-~-  231 (557)
                      ++..+..+|.|...|..+.......+.++.|..+|++++...|.....|...+......+.   .   ..     +. . 
T Consensus        55 lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~  134 (679)
T 4e6h_A           55 LNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL  134 (679)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS
T ss_pred             HHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC
Confidence            3444445899999999999999999999999999999999999999999888776433222   1   11     11 1 


Q ss_pred             --C--hhHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHhc----CCCCHHHHHHHHHHHH---------hcccHH
Q 008705          232 --N--NHWMKDYFLASAYQELRMH--------KESLTKYEYLQGT----FSFSNYIQAQIAKAQY---------SLREFE  286 (557)
Q Consensus       232 --~--~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~l~~----~p~~~~~~~~la~~~~---------~~g~~~  286 (557)
                        +  +-|..+   .......++.        +.....|++++..    ++.+..+|........         ..++.+
T Consensus       135 ~~~sv~LW~~Y---l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~  211 (679)
T 4e6h_A          135 GNNDLSLWLSY---ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ  211 (679)
T ss_dssp             CCCCHHHHHHH---HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred             CCCCHHHHHHH---HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence              1  222222   1112223322        3344777777753    5667777766655433         345678


Q ss_pred             HHHHHHHHHHHhCCCCC--CcHHHHHHHHHhccc-------------hhHHHHHHHHHH----hh---CCCC--------
Q 008705          287 QVEVIFEELLRNDPYRV--DDMDMYSNVLYAKEC-------------FSALSYLAHRVF----MT---DKYR--------  336 (557)
Q Consensus       287 ~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~----~~---~~~~--------  336 (557)
                      .+..+|++++.. |...  ..+..+.......+.             +..+........    .+   .|..        
T Consensus       212 ~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~  290 (679)
T 4e6h_A          212 YIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN  290 (679)
T ss_dssp             HHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred             HHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence            888999999864 4321  122222222111111             111111111100    00   0110        


Q ss_pred             -----------hhHHHHHHHHHhhhC-------chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHH-HHHHHH
Q 008705          337 -----------PESCCIIGNYYSLKG-------QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI-DAYRRA  397 (557)
Q Consensus       337 -----------~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a  397 (557)
                                 ...|......-...+       ..+.....|++++...|.++..|+..+..+...|+.++|+ ..|.++
T Consensus       291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA  370 (679)
T 4e6h_A          291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG  370 (679)
T ss_dssp             SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                       022222222222111       1234567788888888888888888888888888888886 888888


Q ss_pred             HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----------CCC-----------CHHHHHHHHHHHhHHhcC
Q 008705          398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL-----------QPN-----------DSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       398 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------~p~-----------~~~~~~~l~~~~~~~~~~  455 (557)
                      +...|.+...|..++......|+++.|...|++++..           .|.           ...+|...+.+..+  .|
T Consensus       371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR--~~  448 (679)
T 4e6h_A          371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR--IQ  448 (679)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH--cC
Confidence            8888888888888888888888888888888888864           243           34578888888777  88


Q ss_pred             cHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHH
Q 008705          456 MLEEAIKCYRRAANC-NDSEAIALNQLAKLHHALGR-DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFE  533 (557)
Q Consensus       456 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  533 (557)
                      ..+.|...|.+|++. .+....++...|.+....++ .+.|..+|+.+++       ..|.++..+...+......|+.+
T Consensus       449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk-------~~p~~~~~w~~y~~fe~~~~~~~  521 (679)
T 4e6h_A          449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK-------YFATDGEYINKYLDFLIYVNEES  521 (679)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-------HHTTCHHHHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------HCCCchHHHHHHHHHHHhCCCHH
Confidence            888888888888876 43445666677777666654 7888888888888       45677777778888888888888


Q ss_pred             HHHHHHHHHhccCCC
Q 008705          534 EAEVYCTRLLDYTGP  548 (557)
Q Consensus       534 ~A~~~~~~al~~~~~  548 (557)
                      .|..+|++++...|+
T Consensus       522 ~AR~lferal~~~~~  536 (679)
T 4e6h_A          522 QVKSLFESSIDKISD  536 (679)
T ss_dssp             HHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHHhcCC
Confidence            888888888887763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=2.1e-19  Score=168.96  Aligned_cols=237  Identities=14%  Similarity=0.128  Sum_probs=187.3

Q ss_pred             HhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh-hCCCChhHHHHHHHHHhhhCchHHHHH
Q 008705          280 YSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM-TDKYRPESCCIIGNYYSLKGQHEKSVV  358 (557)
Q Consensus       280 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~  358 (557)
                      ...|++++|+..|+++++...                           +... ..|..+.++..+|.++...|++++|+.
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   64 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLE---------------------------KTSGHDHPDVATMLNILALVYRDQNKYKEAAH   64 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHH---------------------------HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---------------------------HhcCCCCHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            356788888888888877432                           1111 124456788999999999999999999


Q ss_pred             HHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCChH
Q 008705          359 YFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--------NPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       359 ~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      +|++++..        .|....++..+|.++...|++++|+..|++++..        +|....++..+|.++...|+++
T Consensus        65 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  144 (283)
T 3edt_B           65 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE  144 (283)
T ss_dssp             HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence            99999987        4666788999999999999999999999999988        4666888999999999999999


Q ss_pred             HHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc---------CCChHHHHHHHHHHH
Q 008705          423 YALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC---------NDSEAIALNQLAKLH  485 (557)
Q Consensus       423 ~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~  485 (557)
                      +|+.+|++++++        .|....++..+|.++..  .|++++|+.++++++..         .+....++..++..+
T Consensus       145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (283)
T 3edt_B          145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK--QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE  222 (283)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence            999999999998        66667889999999999  99999999999999986         344455777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ...+....+.. +..+...........|..+.++..+|.++...|++++|..+|++++++.
T Consensus       223 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          223 ESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            76655444433 3444443333334568889999999999999999999999999999863

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.81  E-value=9.9e-19  Score=158.61  Aligned_cols=191  Identities=11%  Similarity=0.031  Sum_probs=144.1

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH---HHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR---AWY  409 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  409 (557)
                      .+..++.+|..+...|++++|+..|+++++..|.++   .+++.+|.++...|++++|+..|+++++.+|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            467888999999999999999999999999988764   68999999999999999999999999999998864   788


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH-------------
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI-------------  476 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------  476 (557)
                      .+|.++...+..                ....+..++..+..  .|++++|+..|+++++..|+++.             
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~  144 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRD--PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD  144 (225)
T ss_dssp             HHHHHHHHHHC------------------------------C--CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcC--cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence            999998874311                01112223333333  44444444444444444444332             


Q ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          477 ----ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM---VEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       477 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                          ....+|.+|...|++++|+..|+++++       ..|++   +.++..+|.++.++|++++|+..++++....|.+
T Consensus       145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR-------DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                236789999999999999999999999       45554   5789999999999999999999999998876654


Q ss_pred             hh
Q 008705          550 SF  551 (557)
Q Consensus       550 ~~  551 (557)
                      .+
T Consensus       218 ~~  219 (225)
T 2yhc_A          218 LE  219 (225)
T ss_dssp             CC
T ss_pred             hh
Confidence            43

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.81  E-value=4.1e-17  Score=153.30  Aligned_cols=239  Identities=13%  Similarity=0.102  Sum_probs=199.1

Q ss_pred             HHHhhhH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705          246 QELRMHK-ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLRE----------FEQVEVIFEELLRNDPYRVDDMDMYSNVLY  314 (557)
Q Consensus       246 ~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  314 (557)
                      ...|.+. +|+..+.+++..+|++..+|...+.++...+.          +++++.++..++..+|.             
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-------------  106 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-------------  106 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-------------
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-------------
Confidence            3455554 78899999999999999999888888877765          56666666666666665             


Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC--chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC-chHHH
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG--QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN-TPAAI  391 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~  391 (557)
                                           +..+|...+.++...+  .+++++.++.++++.+|.+..+|...+.+....|. +++++
T Consensus       107 ---------------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel  165 (331)
T 3dss_A          107 ---------------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL  165 (331)
T ss_dssp             ---------------------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             ---------------------CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence                                 6778888888888877  48999999999999999999999999999999998 58999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHh--------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc---
Q 008705          392 DAYRRAVDINPRDYRAWYGLGQAYEMM--------------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL---  454 (557)
Q Consensus       392 ~~~~~al~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---  454 (557)
                      +++.++++.+|.+..+|..++.++...              +.+++++.++.+++..+|++..+|+.+..++..  .   
T Consensus       166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~--~~~~  243 (331)
T 3dss_A          166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA--GSGR  243 (331)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS--SSCG
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccCc
Confidence            999999999999999999999999887              568899999999999999999999877766655  4   


Q ss_pred             --------CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 008705          455 --------HMLEEAIKCYRRAANCNDSEAIALNQLAKLHH---ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA  523 (557)
Q Consensus       455 --------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  523 (557)
                              +.++++++++++++++.|++..++..++.+..   ..|..++...++.+.++       .+|....-|..++
T Consensus       244 ~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------~Dp~r~~~y~d~~  316 (331)
T 3dss_A          244 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-------VDPMRAAYLDDLR  316 (331)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH-------HCGGGHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH-------hCcchhhHHHHHH
Confidence                    46899999999999999999777666665543   35778899999999998       6898887777766


Q ss_pred             HHHH
Q 008705          524 THCR  527 (557)
Q Consensus       524 ~~~~  527 (557)
                      .-+.
T Consensus       317 ~~~~  320 (331)
T 3dss_A          317 SKFL  320 (331)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.81  E-value=2.1e-19  Score=168.93  Aligned_cols=228  Identities=12%  Similarity=0.096  Sum_probs=178.6

Q ss_pred             HhhhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705          248 LRMHKESLTKYEYLQGT--------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF  319 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  319 (557)
                      .|++++|+..|+++++.        .|....++..+|.++...|++++|+..|++++.......                
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------   77 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL----------------   77 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc----------------
Confidence            45555556555555542        255678899999999999999999999999997641000                


Q ss_pred             hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHH
Q 008705          320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAI  391 (557)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~  391 (557)
                                -...|..+.++..+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+
T Consensus        78 ----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  147 (283)
T 3edt_B           78 ----------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE  147 (283)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             ----------CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence                      0012234667889999999999999999999999988        4777889999999999999999999


Q ss_pred             HHHHHHHhh--------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHhHHhc
Q 008705          392 DAYRRAVDI--------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL---------QPNDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       392 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------~p~~~~~~~~l~~~~~~~~~  454 (557)
                      ..+++++.+        .|....++..+|.++...|++++|+.++++++++         .+.....+..++..+..  .
T Consensus       148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  225 (283)
T 3edt_B          148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES--K  225 (283)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc--C
Confidence            999999998        6767889999999999999999999999999986         44555677777776654  4


Q ss_pred             Cc------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          455 HM------LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       455 ~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +.      +.++...++......|..+.++..+|.+|...|++++|+.+|+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          226 DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            43      44555555555445567788999999999999999999999999986

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.80  E-value=1.3e-15  Score=158.07  Aligned_cols=423  Identities=10%  Similarity=0.083  Sum_probs=291.9

Q ss_pred             cccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHH
Q 008705           86 DEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLEREL  165 (557)
Q Consensus        86 ~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  165 (557)
                      +|.....-..+++.....++++++..+|+.++..-|....+...|+..+.+...           .    .++..+..-+
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~-----------~----~~~~~v~~lf  126 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKME-----------E----LDAAVIEPVL  126 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-------------C----CCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC-----------c----chHHHHHHHH
Confidence            454555555667777777788888888877765444333333333332211100           0    1244455556


Q ss_pred             hhhhcCCC--CChhHHHHHHHHHHhcCCh----HH----HHHHHHHHhcc----CCCCHHHHHHHHHhhhcHHHHhhcCC
Q 008705          166 STSWKNGT--VDPFGLYLYGIVLKDKGNE----NL----ARTVFVESVNS----YPWNWNAWSELKSLCTSIDILNSLNL  231 (557)
Q Consensus       166 ~~~~~~~~--~~~~~~~~~g~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~a~~~l~~~~~~~~~~~~l~~  231 (557)
                      ++.+...|  .++.+|..+.......++.    ++    ....|++|+..    +|.....|.....+.....      .
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~------~  200 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK------P  200 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC------C
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc------c
Confidence            66665553  5666777776665555543    23    33667776652    5556666655533322100      0


Q ss_pred             ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CH-HHHHHHHH-------------HHHhcccHHHHHHHHHHHH
Q 008705          232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF-SN-YIQAQIAK-------------AQYSLREFEQVEVIFEELL  296 (557)
Q Consensus       232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~-~~~~~la~-------------~~~~~g~~~~A~~~~~~~l  296 (557)
                                +.-+...++.+.+..+|++++.. |. .. .+|.....             +-....+|+.|...+...-
T Consensus       201 ----------~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~  269 (679)
T 4e6h_A          201 ----------VNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWL  269 (679)
T ss_dssp             ----------CSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHH
Confidence                      00112455678888899998864 43 22 12211110             1112234566666665432


Q ss_pred             Hh-------CCCCC-------------------CcHHHHHHHHHhccc---------hhHHHHHHHHHHhhCCCChhHHH
Q 008705          297 RN-------DPYRV-------------------DDMDMYSNVLYAKEC---------FSALSYLAHRVFMTDKYRPESCC  341 (557)
Q Consensus       297 ~~-------~p~~~-------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  341 (557)
                      ..       .|...                   ..|..+..  +...+         ...+..++++++...|..++.|+
T Consensus       270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~--fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~  347 (679)
T 4e6h_A          270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR--WESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWF  347 (679)
T ss_dssp             HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH--HHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence            21       11110                   01122222  22221         23356788999999999999999


Q ss_pred             HHHHHHhhhCchHHHH-HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----------CCC------
Q 008705          342 IIGNYYSLKGQHEKSV-VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----------NPR------  403 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~p~------  403 (557)
                      ..+..+...|+.++|. ..|++|+...|.+...|...+......|+++.|...|++++..           .|.      
T Consensus       348 ~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~  427 (679)
T 4e6h_A          348 NMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN  427 (679)
T ss_dssp             HHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence            9999999999999997 9999999999999999999999999999999999999999975           243      


Q ss_pred             -----ChHHHHHHHHHHHHhCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhHHhcC-cHHHHHHHHHHHHhcCCChHH
Q 008705          404 -----DYRAWYGLGQAYEMMHMPLYALHYFRKSVFL-QPNDSRLWIAMAQCYETEQLH-MLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       404 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~  476 (557)
                           ...+|...+....+.|..+.|...|.+|++. .+....+|...+.+...  .+ +++.|.++|+++++..|+++.
T Consensus       428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~--~~~d~e~Ar~ife~~Lk~~p~~~~  505 (679)
T 4e6h_A          428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH--ISKDTKTACKVLELGLKYFATDGE  505 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT--TTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred             hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHCCCchH
Confidence                 3457888899989999999999999999987 44557788877777666  65 489999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP---NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      .+...+......|+.+.|..+|++++.       ..|   ....+|..........|+.+.+....+++.+..|++..
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~-------~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSID-------KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTT-------TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            999999999999999999999999998       444   56788999999999999999999999999999987654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=9.1e-20  Score=175.63  Aligned_cols=291  Identities=13%  Similarity=0.089  Sum_probs=145.7

Q ss_pred             HHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 008705          184 IVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQG  263 (557)
Q Consensus       184 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~  263 (557)
                      ....+.|+.++|.+++++.     +++.+|..|                         |.++...|++++|++.|.++  
T Consensus        11 ~ll~~~~~ld~A~~fae~~-----~~~~vWs~L-------------------------a~A~l~~g~~~eAIdsfika--   58 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERC-----NEPAVWSQL-------------------------AKAQLQKGMVKEAIDSYIKA--   58 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhC-----CChHHHHHH-------------------------HHHHHHcCCHHHHHHHHHcC--
Confidence            3445788899999999998     223467666                         99999999999999999774  


Q ss_pred             cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHH
Q 008705          264 TFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCII  343 (557)
Q Consensus       264 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (557)
                         .++..+...+.++...|++++|+.+++.+++..++ +.....++.++...|++.++..+.+.     | +..+|..+
T Consensus        59 ---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~I  128 (449)
T 1b89_A           59 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQV  128 (449)
T ss_dssp             ------------------------------------------------------CHHHHTTTTTC-----C---------
T ss_pred             ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHH
Confidence               45668888899999999999999999999886443 45556677788888888887766532     3 44699999


Q ss_pred             HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHH
Q 008705          344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLY  423 (557)
Q Consensus       344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  423 (557)
                      |..+...|++++|..+|.++        ..|..+|.++..+|++++|++.++++     .++.+|...+.++...|+++.
T Consensus       129 Gd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~l  195 (449)
T 1b89_A          129 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL  195 (449)
T ss_dssp             --------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHH
Confidence            99999999999999999976        46889999999999999999999999     478999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 008705          424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL--GRDEEAAFYYKKD  501 (557)
Q Consensus       424 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a  501 (557)
                      |..+... +...   +.-...++.+|.+  .|++++|+.++++++.+++.+..++..+|.+|.+-  ++..+.++.|...
T Consensus       196 A~~~~l~-L~~~---ad~l~~lv~~Yek--~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~  269 (449)
T 1b89_A          196 AQMCGLH-IVVH---ADELEELINYYQD--RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR  269 (449)
T ss_dssp             HHHTTTT-TTTC---HHHHHHHHHHHHH--TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred             HHHHHHH-HHhC---HhhHHHHHHHHHH--CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9877765 3344   4445578899999  99999999999999999999999999999998765  3445555555444


Q ss_pred             HHHHHhhhcCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          502 LERMEAEEREGP-----NMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       502 l~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      +.       ..|     +.+..|..+..+|...++++.|......-
T Consensus       270 in-------i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          270 VN-------IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             SC-------HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hc-------CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            43       334     56778899999999999999999866554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.80  E-value=5.5e-18  Score=153.67  Aligned_cols=200  Identities=12%  Similarity=0.059  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSN---YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY  314 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  314 (557)
                      .+.+|..+...|++++|+..|++++..+|.++   .+++.+|.+++..|++++|+..|+++++.+|++.           
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-----------   75 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-----------   75 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----------
Confidence            44456666666666666666666666666663   4566666666666666666666666666666431           


Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY  394 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  394 (557)
                                          ..+.+++.+|.++...+..                ....+..++..+...|++++|+..|
T Consensus        76 --------------------~~~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           76 --------------------NIDYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             --------------------THHHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHH
T ss_pred             --------------------cHHHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHH
Confidence                                1234556666665543321                1112233444444566777777777


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      +++++.+|++..++..+..+....+.                 .......+|.++..  .|++++|+..|+++++..|++
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~-----------------~~~~~~~~a~~~~~--~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDR-----------------LAKYEYSVAEYYTE--RGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHCcCC
Confidence            77777777776554322221111100                 01123456777777  777777777777777777765


Q ss_pred             H---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          475 A---IALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       475 ~---~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +   .++..+|.++.++|++++|+..++++..
T Consensus       181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            4   5677777777777777777777776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.80  E-value=9.9e-19  Score=142.32  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=77.0

Q ss_pred             HhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 008705          364 LKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI  443 (557)
Q Consensus       364 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  443 (557)
                      ..++|+...++..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+|.
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705          444 AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       444 ~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  484 (557)
                      .+|.++..  +|++++|+..|+++++++|++..++..++.+
T Consensus        86 ~lg~~~~~--~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           86 RKAACLVA--MREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHH--CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            66666666  6666666666666666666666666666554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=7.5e-19  Score=152.75  Aligned_cols=167  Identities=13%  Similarity=0.027  Sum_probs=150.2

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                      |...+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            334567888999999999999999999999999999999999999999999999999999999999999 8877766665


Q ss_pred             HHH-HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCC
Q 008705          414 AYE-MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGR  490 (557)
Q Consensus       414 ~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  490 (557)
                      +.. ..+...+|+..++++++.+|+++.+++.+|.++..  .|++++|+..|++++..+|..  +.++..+|.++...|+
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~  159 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ--VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ  159 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence            533 33445568999999999999999999999999999  999999999999999999875  6699999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 008705          491 DEEAAFYYKKDLE  503 (557)
Q Consensus       491 ~~~A~~~~~~al~  503 (557)
                      .++|+..|++++.
T Consensus       160 ~~~A~~~y~~al~  172 (176)
T 2r5s_A          160 GNAIASKYRRQLY  172 (176)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999999987

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.79  E-value=6.5e-17  Score=151.92  Aligned_cols=237  Identities=13%  Similarity=0.086  Sum_probs=193.5

Q ss_pred             hcccHH-HHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHH
Q 008705          281 SLREFE-QVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVY  359 (557)
Q Consensus       281 ~~g~~~-~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  359 (557)
                      ..|++. +|+..+.+++..+|.+..+|.....++...+..            .   .++         .....+++++.+
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~---~~~---------~~~~~l~~EL~~   96 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------K---SPE---------ESAALVKAELGF   96 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------S---CHH---------HHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------c---cch---------hhhHHHHHHHHH
Confidence            445554 788888888888887666555554444322110            0   000         001237899999


Q ss_pred             HHHHHhcCcCCHHHHHHHhHHHHhcCC--chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCC
Q 008705          360 FRRALKLDKNYLSAWTLMGHEYVEMKN--TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM-PLYALHYFRKSVFLQP  436 (557)
Q Consensus       360 ~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p  436 (557)
                      +..++..+|.+..+|...+.++...++  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|
T Consensus        97 ~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A           97 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999995  8999999999999999999999999999999999 5999999999999999


Q ss_pred             CCHHHHHHHHHHHhHHhc--------------CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCH
Q 008705          437 NDSRLWIAMAQCYETEQL--------------HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL-----------GRD  491 (557)
Q Consensus       437 ~~~~~~~~l~~~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~  491 (557)
                      .+..+|..++.++..  .              +.++++++++.+++..+|++..+|+.+..++...           +.+
T Consensus       177 ~N~SAW~~R~~ll~~--l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l  254 (331)
T 3dss_A          177 SNYSSWHYRSCLLPQ--LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVL  254 (331)
T ss_dssp             CCHHHHHHHHHHHHH--HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence            999999999999988  6              5789999999999999999999998777776665           457


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCch
Q 008705          492 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR---AHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      ++++++++++++       ..|++..++..++.+..   ..|..++...++.+++++||-..
T Consensus       255 ~~el~~~~elle-------~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~  309 (331)
T 3dss_A          255 QSELESCKELQE-------LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  309 (331)
T ss_dssp             HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHh-------hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence            899999999998       68888776666655433   36888999999999999997654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=1.4e-18  Score=141.50  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=115.5

Q ss_pred             HHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH
Q 008705          329 VFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW  408 (557)
Q Consensus       329 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  408 (557)
                      +..++|..++.+..+|+.|+..|++++|+.+|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|++..+|
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            34567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      +.+|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.78  E-value=4.5e-17  Score=153.58  Aligned_cols=240  Identities=13%  Similarity=0.050  Sum_probs=200.6

Q ss_pred             HHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705          244 AYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR-EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL  322 (557)
Q Consensus       244 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  322 (557)
                      +....+..++|+..+++++..+|++..+|..++.++...| .+++++..+++++..+|.+                    
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn--------------------  122 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS--------------------  122 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC--------------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc--------------------
Confidence            3344455678999999999999999999999999999999 5999999999999988874                    


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHhhh-C-chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch--------HHHH
Q 008705          323 SYLAHRVFMTDKYRPESCCIIGNYYSLK-G-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP--------AAID  392 (557)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~  392 (557)
                                    ..+|...+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++        ++++
T Consensus       123 --------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe  188 (349)
T 3q7a_A          123 --------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD  188 (349)
T ss_dssp             --------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence                          56777777777776 6 8899999999999999999999999999999988888        9999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCC-------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcH--------
Q 008705          393 AYRRAVDINPRDYRAWYGLGQAYEMMHM-------PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML--------  457 (557)
Q Consensus       393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~--------  457 (557)
                      ++.++++.+|.+..+|...+.+....++       +++++.++++++..+|++..+|+.+..++..  .|+.        
T Consensus       189 ~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~--~~~~~~~~~~~~  266 (349)
T 3q7a_A          189 WCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH--FSLPLVPILPAI  266 (349)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCCSGGGHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cCCCcccccccc
Confidence            9999999999999999999999999887       7899999999999999999999999888887  6653        


Q ss_pred             ------------HHHHHHHHHHHhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 008705          458 ------------EEAIKCYRRAANCN------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL  519 (557)
Q Consensus       458 ------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (557)
                                  .+-.......+...      +..+.++..++.+|...|+.++|.++++...+.      .+|-....|
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~------~dpir~~yw  340 (349)
T 3q7a_A          267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE------YDQMRAGYW  340 (349)
T ss_dssp             GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCGGGHHHH
T ss_pred             cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------hChHHHHHH
Confidence                        22222222222222      466789999999999999999999999998752      688888888


Q ss_pred             HHHHHH
Q 008705          520 IFLATH  525 (557)
Q Consensus       520 ~~la~~  525 (557)
                      ...+..
T Consensus       341 ~~~~~~  346 (349)
T 3q7a_A          341 EFRRRE  346 (349)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.78  E-value=8.1e-19  Score=152.54  Aligned_cols=169  Identities=13%  Similarity=-0.031  Sum_probs=149.1

Q ss_pred             CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      +|.....++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| ++..+..++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            3445567889999999999999999999999999999999999999999999999999999999999999 887776666


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch--HHHHHHHHH
Q 008705          447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM--VEALIFLAT  524 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~  524 (557)
                      .+.... .+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++       ..|..  +.++..+|.
T Consensus        81 ~~~~~~-~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~a~~~l~~  152 (176)
T 2r5s_A           81 KLELHQ-QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-------VNLGAQDGEVKKTFMD  152 (176)
T ss_dssp             HHHHHH-HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTTTTTHHHHHHHH
T ss_pred             HHHHHh-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hCcccChHHHHHHHHH
Confidence            554320 33445689999999999999999999999999999999999999999998       67764  669999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhc
Q 008705          525 HCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       525 ~~~~~g~~~~A~~~~~~al~  544 (557)
                      ++...|+.++|...|++++.
T Consensus       153 ~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          153 ILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.78  E-value=8.2e-18  Score=158.46  Aligned_cols=169  Identities=11%  Similarity=0.037  Sum_probs=161.6

Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      .|..++.+..+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+....+...+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999997777777788


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCC
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGR  490 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  490 (557)
                      ..+...++.++|+..|++++..+|+++.+++.+|.++..  .|++++|+..|++++..+|++  ..++..++.++...|+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~--~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ--VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            889999999999999999999999999999999999999  999999999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 008705          491 DEEAAFYYKKDLE  503 (557)
Q Consensus       491 ~~~A~~~~~~al~  503 (557)
                      .++|...|++++.
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999999987

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.77  E-value=4.5e-17  Score=153.53  Aligned_cols=225  Identities=11%  Similarity=0.045  Sum_probs=186.7

Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhC-chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-C-CchHHHHHHHHH
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKG-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-K-NTPAAIDAYRRA  397 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~a  397 (557)
                      ++..+...++..+|.+..+|...+.++...| .+++++.++.+++..+|++..+|...+.++... + ++++++.++.++
T Consensus        72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  151 (349)
T 3q7a_A           72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS  151 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            3444455555555567788888898888888 599999999999999999999999999999998 8 999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHhCChH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc-------HHHHHH
Q 008705          398 VDINPRDYRAWYGLGQAYEMMHMPL--------YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM-------LEEAIK  462 (557)
Q Consensus       398 l~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-------~~~A~~  462 (557)
                      ++.+|++..+|...+.+....|.++        +++.++.++++.+|.+..+|...+.++..  .++       ++++++
T Consensus       152 L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~--l~~~~~~~~~~~eELe  229 (349)
T 3q7a_A          152 LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS--RPGAETSSRSLQDELI  229 (349)
T ss_dssp             TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT--STTCCCCHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccccchHHHHHHHH
Confidence            9999999999999999999999888        99999999999999999999999999998  886       799999


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHcCCHHH----------------HH-HHHHHHHHHHHhh--hcCCcchHHHHHHHH
Q 008705          463 CYRRAANCNDSEAIALNQLAKLHHALGRDEE----------------AA-FYYKKDLERMEAE--EREGPNMVEALIFLA  523 (557)
Q Consensus       463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----------------A~-~~~~~al~~~~~~--~~~~~~~~~~~~~la  523 (557)
                      ++++++..+|++..+|+.+..++...|+...                .. ..-+.+++.....  ....+..+.++..++
T Consensus       230 ~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~  309 (349)
T 3q7a_A          230 YILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA  309 (349)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence            9999999999999999999999998887510                00 1111122111000  012256788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHh-ccCC
Q 008705          524 THCRAHGRFEEAEVYCTRLL-DYTG  547 (557)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~al-~~~~  547 (557)
                      .+|...|+.++|.+.|+.+. +.+|
T Consensus       310 d~~~~~~~~~~a~~~~~~l~~~~dp  334 (349)
T 3q7a_A          310 DSFIEQNRVDDAAKVFEKLSSEYDQ  334 (349)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhhCh
Confidence            99999999999999999987 5553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.76  E-value=1.3e-17  Score=157.13  Aligned_cols=169  Identities=13%  Similarity=-0.009  Sum_probs=160.2

Q ss_pred             CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      .|.+...+..+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+....+...+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            48889999999999999999999999999999999999999999999999999999999999999999997776777777


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch--HHHHHHHHH
Q 008705          447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM--VEALIFLAT  524 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~  524 (557)
                      ..+..  .++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++       .+|++  ..++..++.
T Consensus       193 ~~l~~--~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~-------~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          193 IELLX--QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR-------XDLTAADGQTRXTFQE  263 (287)
T ss_dssp             HHHHH--HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTGGGGHHHHHHHH
T ss_pred             HHHHh--hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-------cccccccchHHHHHHH
Confidence            77888  89999999999999999999999999999999999999999999999999       57877  899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhc
Q 008705          525 HCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       525 ~~~~~g~~~~A~~~~~~al~  544 (557)
                      ++...|+.++|...|++++.
T Consensus       264 ~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          264 ILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=2.5e-18  Score=144.03  Aligned_cols=122  Identities=13%  Similarity=0.111  Sum_probs=111.2

Q ss_pred             chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705          352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS  431 (557)
Q Consensus       352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  431 (557)
                      ++-.+-..+++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            33344456777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       432 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      ++++|+++.+|+.+|.++..  +|++++|+.+|++++.+.|+.+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~--lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLR--LKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HhhCCCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999  9999999999999999998865

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.75  E-value=6.1e-18  Score=154.24  Aligned_cols=200  Identities=13%  Similarity=0.022  Sum_probs=175.8

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH-------hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH--
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM-------GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG--  410 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--  410 (557)
                      .+..|.-+ ..+++..|...|.+++.++|+..++|..+       +.++...++..+++..+++.+.+.|....+++.  
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~   88 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG   88 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence            34445555 58999999999999999999999999999       899999999999999999999988876544444  


Q ss_pred             -------------------HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          411 -------------------LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       411 -------------------l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                                         ++.++...|++++|...|..++...|.+. ..+.+|.++..  .+++++|+..|+++....
T Consensus        89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~--~~r~~dA~~~l~~a~~~~  165 (282)
T 4f3v_A           89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA--AERWTDVIDQVKSAGKWP  165 (282)
T ss_dssp             TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH--TTCHHHHHHHHTTGGGCS
T ss_pred             CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH--cCCHHHHHHHHHHhhccC
Confidence                               77899999999999999999999999888 99999999999  999999999999887764


Q ss_pred             CCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          472 DSE--AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       472 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      +..  ..+++.+|.++..+|++++|+.+|++++..     ...|. .+.+++.+|.++.++|+.++|...|++++..+|.
T Consensus       166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            332  458999999999999999999999999861     11155 7789999999999999999999999999999986

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.74  E-value=1.9e-17  Score=172.13  Aligned_cols=165  Identities=18%  Similarity=0.219  Sum_probs=123.9

Q ss_pred             hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHH
Q 008705          350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFR  429 (557)
Q Consensus       350 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  429 (557)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            46788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHH
Q 008705          430 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL---GRDEEAAFYYKKDLERME  506 (557)
Q Consensus       430 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~  506 (557)
                      ++++.+|+++.++..+|.++..  .|++++|+..|+++++.+|+++.++..+|.++...   |++++|...|+++++   
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~---  156 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALED--AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA---  156 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH---
T ss_pred             HHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh---
Confidence            8888888888888888888888  88888888888888888888888888888888888   888888888888888   


Q ss_pred             hhhcCCcchHHHHHHHH
Q 008705          507 AEEREGPNMVEALIFLA  523 (557)
Q Consensus       507 ~~~~~~~~~~~~~~~la  523 (557)
                          ..|.....+..++
T Consensus       157 ----~~p~~~~~~~~l~  169 (568)
T 2vsy_A          157 ----QGVGAVEPFAFLS  169 (568)
T ss_dssp             ----HTCCCSCHHHHTT
T ss_pred             ----cCCcccChHHHhC
Confidence                4565555555554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.74  E-value=2.6e-19  Score=172.57  Aligned_cols=186  Identities=18%  Similarity=0.167  Sum_probs=130.7

Q ss_pred             hhhCchHHHHHHHHH----HHhcCcCCHHHHHHHhHHHH------------hcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          348 SLKGQHEKSVVYFRR----ALKLDKNYLSAWTLMGHEYV------------EMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                      ...+.+++|+..+++    ++.+.|..  ++...|....            .++++++|+..|++++..+|.+..++..+
T Consensus        76 ~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~  153 (336)
T 1p5q_A           76 DLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER  153 (336)
T ss_dssp             TCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHH
Confidence            334566677777766    66666665  4444443332            45566677777777777777777777777


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPND---------------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      |.++...|++++|+..|++++.+.|.+               ..++.++|.++..  .|++++|+.+|++++.++|+++.
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~g~~~~A~~~~~~al~~~p~~~~  231 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK--LQAFSAAIESCNKALELDSNNEK  231 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHH
Confidence            777777777777777777777777776               5677777777777  77777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHhc
Q 008705          477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA-EVYCTRLLD  544 (557)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~  544 (557)
                      +++.+|.+|..+|++++|+.+|+++++       ..|.+..++..++.++...|++++| ...|++++.
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQ-------LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777       5677777777777777777777777 445555554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.73  E-value=8.4e-18  Score=140.79  Aligned_cols=110  Identities=11%  Similarity=0.065  Sum_probs=107.0

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      ..+++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++..  .|++++|+.+|++++.++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI--KEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HccHHHHHHHHHHHHhhC
Confidence            456778889999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      |+++.+++++|.+|..+|++++|+.+|+++++
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.73  E-value=7.7e-17  Score=167.59  Aligned_cols=157  Identities=17%  Similarity=0.103  Sum_probs=134.7

Q ss_pred             cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC  463 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~  463 (557)
                      .|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..  .|++++|+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT--QQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 008705          464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH---GRFEEAEVYCT  540 (557)
Q Consensus       464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~  540 (557)
                      |+++++.+|+++.++..+|.++...|++++|+.+|+++++       ..|+++.++..+|.++...   |++++|...++
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~  152 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ-------LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR  152 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999       6899999999999999999   99999999999


Q ss_pred             HHhccCCCc
Q 008705          541 RLLDYTGPV  549 (557)
Q Consensus       541 ~al~~~~~~  549 (557)
                      ++++.+|..
T Consensus       153 ~al~~~p~~  161 (568)
T 2vsy_A          153 AAVAQGVGA  161 (568)
T ss_dssp             HHHHHTCCC
T ss_pred             HHHhcCCcc
Confidence            999998764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.73  E-value=2.4e-16  Score=150.06  Aligned_cols=188  Identities=12%  Similarity=0.048  Sum_probs=126.7

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHH
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYG  410 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  410 (557)
                      .|.+|...|++++|+.+|.+++.+.+..      ..++..+|.+|...|++++|+.+|++++.+.+..      ..++..
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  121 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR  121 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3556667778888888888877765432      3467778888888888888888888887764321      456777


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHH
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIAL  478 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~  478 (557)
                      +|.+|.. |++++|+.+|++++.+.|..      ..++..+|.++..  +|++++|+.+|++++.+.|.+      ..++
T Consensus       122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  198 (307)
T 2ifu_A          122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR--QQKFDEAAASLQKEKSMYKEMENYPTCYKKC  198 (307)
T ss_dssp             HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence            8888877 88888888888888776543      4567778888888  888888888888887764432      2367


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 008705          479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV  537 (557)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  537 (557)
                      ..+|.++..+|++++|+.+|++++ ..+. . ...........++..+ ..|+.+.+..
T Consensus       199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p~-~-~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          199 IAQVLVQLHRADYVAAQKCVRESY-SIPG-F-SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHT-TSTT-S-TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHh-CCCC-C-CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            777778888888888888888877 3211 0 0112233444555544 4566544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=2e-16  Score=141.68  Aligned_cols=183  Identities=14%  Similarity=-0.027  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----ChHHHHHHHH
Q 008705          354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----MPLYALHYFR  429 (557)
Q Consensus       354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~  429 (557)
                      .+|+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3577788888765  67888888888888888888888888888775  478888888888887 6    8888888888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 008705          430 KSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCND--SEAIALNQLAKLHHA----LGRDEEAAFYYKKD  501 (557)
Q Consensus       430 ~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  501 (557)
                      ++.+  +.++.+++.+|.+|..+.  .+++++|+.+|+++.+..|  .++.++++||.+|..    .+++++|+.+|+++
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            8865  567888888888886311  4688888888888888877  358888888888888    78888999999888


Q ss_pred             HHHHHhhhcCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCCCchh
Q 008705          502 LERMEAEEREGPNMVEALIFLATHCRAH-G-----RFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       502 l~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~  551 (557)
                      ++       . +.++.+++.||.+|... |     ++++|+.+|+++++...+...
T Consensus       156 ~~-------~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~  203 (212)
T 3rjv_A          156 SS-------L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC  203 (212)
T ss_dssp             HH-------T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HH-------c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            87       3 55667888888888764 3     888999999888887654443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.71  E-value=3e-16  Score=149.42  Aligned_cols=217  Identities=13%  Similarity=0.001  Sum_probs=162.8

Q ss_pred             HHhhhHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705          247 ELRMHKESLTKYEYLQGTFSFS-----------NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA  315 (557)
Q Consensus       247 ~~~~~~~A~~~~~~~l~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  315 (557)
                      ..|++.+|.++++++.+..+..           ...+...|.++...|++++|+..|.+++...+...+           
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------   71 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-----------   71 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----------
Confidence            3577888888888776643321           113344455666666666666666666655432110           


Q ss_pred             ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC------CHHHHHHHhHHHHhcCCchH
Q 008705          316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN------YLSAWTLMGHEYVEMKNTPA  389 (557)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~  389 (557)
                         .              .....++..+|.+|...|++++|+.+|++++.+.+.      ...++..+|.+|.. |++++
T Consensus        72 ---~--------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~  133 (307)
T 2ifu_A           72 ---L--------------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK  133 (307)
T ss_dssp             ---H--------------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             ---H--------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence               0              012356778999999999999999999999988543      24678899999998 99999


Q ss_pred             HHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcH
Q 008705          390 AIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHML  457 (557)
Q Consensus       390 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~  457 (557)
                      |+.+|++++.+.|..      ..++..+|.+|..+|++++|+.+|++++.+.|.+      ...+..+|.++..  .|++
T Consensus       134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~--~g~~  211 (307)
T 2ifu_A          134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH--RADY  211 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCH
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH--cCCH
Confidence            999999999987654      5788999999999999999999999999986543      3478889999999  9999


Q ss_pred             HHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHcCCHHHHHH
Q 008705          458 EEAIKCYRRAANCNDSEA-----IALNQLAKLHHALGRDEEAAF  496 (557)
Q Consensus       458 ~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~  496 (557)
                      ++|+.+|++++ +.|...     ..+..++..+ ..|+.+.+..
T Consensus       212 ~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          212 VAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            99999999999 888653     2455566655 5677665544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.71  E-value=3.9e-17  Score=153.20  Aligned_cols=199  Identities=13%  Similarity=0.062  Sum_probs=165.8

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                      |..+..+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  493 (557)
                      ++..+|++++|+..|+++++++|+++..+.........     ..++...........|.++.+...++.++  .|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-----HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence            99999999999999999999988764322212211111     12223333344456777788877787765  689999


Q ss_pred             HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccC
Q 008705          494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH-GRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~  546 (557)
                      |++.++++++       ..|.+......++.++.+. +.+++|...|.++.+..
T Consensus       154 A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          154 ELEECQRNHE-------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             HHTTTSGGGT-------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHHhhhc-------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            9999999998       7899988888888888777 77999999999998753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=3.2e-17  Score=137.58  Aligned_cols=119  Identities=14%  Similarity=0.100  Sum_probs=102.2

Q ss_pred             HHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          357 VVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       357 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      -..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH
Q 008705          437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA  477 (557)
Q Consensus       437 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  477 (557)
                      +++.+++.+|.++..  .|++++|+.+|++++.+.|+++..
T Consensus        87 ~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQ--XGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCCCcc
Confidence            888888888888888  888888888888888888776543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.70  E-value=1.1e-16  Score=146.07  Aligned_cols=203  Identities=11%  Similarity=-0.022  Sum_probs=165.6

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHH-------HHHH
Q 008705          275 IAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCII-------GNYY  347 (557)
Q Consensus       275 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------a~~~  347 (557)
                      .|..+ ..+++..|...|.+++..+|..                                  +++|..+       +.++
T Consensus        13 ~~~~~-~~~d~~~A~~~F~~a~~~dP~~----------------------------------~Daw~g~~a~g~~~~~~L   57 (282)
T 4f3v_A           13 SAVSM-LPMSEARSLDLFTEITNYDESA----------------------------------CDAWIGRIRCGDTDRVTL   57 (282)
T ss_dssp             HHHHH-TTTCHHHHHHHHHHHHHHCTTC----------------------------------HHHHHHHHHTTCCCHHHH
T ss_pred             HHhcc-cCCCHHHHHHHHHHHHHhChhh----------------------------------hHHHHhHHHccCCcHHHH
Confidence            33444 5788888888888888888874                                  5566656       6777


Q ss_pred             hhhCchHHHHHHHHHHHhcCcCCHHH---------------------HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNYLSA---------------------WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR  406 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~~~~---------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  406 (557)
                      ...+++.+++..+++++.+.|....+                     +..++.++...|++++|.+.|..++...|.+. 
T Consensus        58 ~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-  136 (282)
T 4f3v_A           58 FRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-  136 (282)
T ss_dssp             HHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-
T ss_pred             HHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-
Confidence            77788888999999999887765443                     34477889999999999999999998899888 


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC--CC-hHHHHHHH
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN--DS-EAIALNQL  481 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l  481 (557)
                      +.+.+|.++...+++++|+.+|+++....+..  ..+++.+|.++..  +|++++|+.+|++++...  |. .+.+++.+
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~--LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~  214 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN--LALFTEAERRLTEANDSPAGEACARAIAWYL  214 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence            99999999999999999999999887653221  3488999999999  999999999999998654  55 67799999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 008705          482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA  523 (557)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  523 (557)
                      |.++..+|+.++|...|++++.       .+|+ ..+...|.
T Consensus       215 glaL~~lGr~deA~~~l~~a~a-------~~P~-~~~~~aL~  248 (282)
T 4f3v_A          215 AMARRSQGNESAAVALLEWLQT-------THPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH-------HSCC-HHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh-------cCCc-HHHHHHHh
Confidence            9999999999999999999998       5787 77666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.69  E-value=1.1e-15  Score=136.75  Aligned_cols=176  Identities=13%  Similarity=0.060  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705          253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT  332 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (557)
                      +|+..|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+..                                 
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------------------------------   48 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------------------------------   48 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------------
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------------------------------
Confidence            566777777664  678888888888888888888888888887642                                 


Q ss_pred             CCCChhHHHHHHHHHhhhC----chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCC--
Q 008705          333 DKYRPESCCIIGNYYSLKG----QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINP--  402 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p--  402 (557)
                         ++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.+++.+|.+|..    .+++++|+.+|+++++..+  
T Consensus        49 ---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  122 (212)
T 3rjv_A           49 ---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD  122 (212)
T ss_dssp             ---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH
T ss_pred             ---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc
Confidence               45677778888877 6    78888888888854  5678888888888887    7888888888888888777  


Q ss_pred             CChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc-C-----cHHHHHHHHHHHHhcCC
Q 008705          403 RDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-H-----MLEEAIKCYRRAANCND  472 (557)
Q Consensus       403 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~-----~~~~A~~~~~~al~~~p  472 (557)
                      .++.+++.||.+|..    .+++++|+.+|+++++. |.++.+++.+|.+|..  . |     ++++|+.+|+++.+...
T Consensus       123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~--g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ--GEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH--CBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc--CCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            347888888888888    77888888888888887 6667788888888876  3 2     78888888888887644

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.69  E-value=5.2e-17  Score=156.47  Aligned_cols=155  Identities=14%  Similarity=0.088  Sum_probs=142.6

Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---------------hHHHHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---------------YRAWYGLGQ  413 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~  413 (557)
                      ..+++++|+..|++++..+|....++..+|.++...|++++|+..|++++.++|.+               ..+|.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            35778888888888888889899999999999999999999999999999999988               589999999


Q ss_pred             HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  493 (557)
                      +|..+|++++|+.+|+++++++|+++.+++.+|.++..  +|++++|+.+|+++++++|++..++..++.++...|++++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA--VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHHH
Q 008705          494 A-AFYYKKDLERM  505 (557)
Q Consensus       494 A-~~~~~~al~~~  505 (557)
                      | ...|++++..+
T Consensus       283 a~~~~~~~~~~~~  295 (336)
T 1p5q_A          283 REKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9 55778777644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.68  E-value=4e-16  Score=146.33  Aligned_cols=197  Identities=7%  Similarity=-0.046  Sum_probs=141.0

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      |.++..++.+|..+...|++++|+..|+++++.+|.+..++..+                         |.++...|+++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~~~~~   55 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-------------------------ALCYLKMQQPE   55 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-------------------------HHHHHHTTCHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------HHHHHHhcCHH
Confidence            56788999999999999999999999999999999999888766                         99999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705          253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT  332 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (557)
                      +|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...+..........   .............
T Consensus        56 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  132 (281)
T 2c2l_A           56 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERR  132 (281)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997654333222221111   1111111122233


Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-CCchHHHHHHHHHHh
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-KNTPAAIDAYRRAVD  399 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~  399 (557)
                      .+.++.+...++.++  .|++++|+..++++++.+|++......++.++... +.+++|.+.|.++.+
T Consensus       133 ~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          133 IHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             CCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            444455544454443  45556666666666666555555544444444444 445555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.68  E-value=2.1e-15  Score=123.97  Aligned_cols=134  Identities=29%  Similarity=0.585  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      ++++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            35566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                      .|++++|+.++++++...|.++.++..+|.++..  .|++++|+.++++++..+|.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSTT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--HccHHHHHHHHHHHHccCCC
Confidence            7777777777777777777777777777777777  77777777777777776664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.67  E-value=1.7e-16  Score=132.28  Aligned_cols=121  Identities=16%  Similarity=0.163  Sum_probs=93.4

Q ss_pred             HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705          358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       358 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  437 (557)
                      ..|++++.++|++..+++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45667777778878888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705          438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ  480 (557)
Q Consensus       438 ~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  480 (557)
                      ++.+++.+|.++..  .|++++|+.+|++++.+.|.++.....
T Consensus        85 ~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A           85 EPRFPFHAAECHLQ--LGDLDGAESGFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             CTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             CcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence            88888888888888  888888888888888877766554433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.66  E-value=2.2e-16  Score=132.47  Aligned_cols=112  Identities=18%  Similarity=0.092  Sum_probs=108.6

Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705          391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC  470 (557)
Q Consensus       391 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~  470 (557)
                      -..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++..  .|++++|+.+|++++.+
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA--MGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhc
Confidence            4568899999999999999999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          471 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       471 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      +|+++.+++.+|.++...|++++|+.+|+++++.
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999983

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.66  E-value=3.2e-15  Score=122.84  Aligned_cols=132  Identities=30%  Similarity=0.451  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      +|+.+|.++...|++++|+..++++++..|.++.++..+|.++..  .|++++|+..+++++...|.++.++..+|.++.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH--hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555555555  555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705          487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  547 (557)
                      ..|++++|+.+++++++       ..|..+.++..+|.++...|++++|..++++++..+|
T Consensus        81 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALE-------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HhcCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            55555555555555554       2344444555555555555555555555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=3.5e-16  Score=160.43  Aligned_cols=188  Identities=11%  Similarity=0.060  Sum_probs=174.7

Q ss_pred             chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC----------chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC--
Q 008705          352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN----------TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH--  419 (557)
Q Consensus       352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--  419 (557)
                      ..++|+..+.+++..+|++..+|...+.++...|+          +++++..+.++++.+|+++.+|+..+.++...+  
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            34688999999999999999999999999999998          999999999999999999999999999999999  


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC-cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc----------
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH-MLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL----------  488 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------  488 (557)
                      ++++++.++.++++.+|.+..+|...+.++..  .| .++++++++.++++.+|.+..+|...+.++...          
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~--l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQ--AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHH--cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence            67999999999999999999999999999999  99 999999999999999999999999999999885          


Q ss_pred             ----CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH------------HHHHHHHHhccCCC
Q 008705          489 ----GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE------------AEVYCTRLLDYTGP  548 (557)
Q Consensus       489 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~~~  548 (557)
                          +.+++|++++.+++.       .+|++..+|+.++.++...+++++            |+..|.+++.++|.
T Consensus       202 ~~~~~~~~eel~~~~~ai~-------~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFF-------TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHH-------HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             cccHHHHHHHHHHHHHHHh-------hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence                567999999999999       699999999999999999998766            56667777777654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.65  E-value=1.7e-14  Score=136.27  Aligned_cols=176  Identities=11%  Similarity=-0.050  Sum_probs=146.6

Q ss_pred             cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---
Q 008705          368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---  438 (557)
Q Consensus       368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---  438 (557)
                      |.....+...+..+...|++++|++.+.++++..+...      ..++.+|.++...|++++|+.+|++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            44455667788888999999999999999998877653      345678889999999999999999999875543   


Q ss_pred             ---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHH---hcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705          439 ---SRLWIAMAQCYETEQLHMLEEAIKCYRRAA---NCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE  508 (557)
Q Consensus       439 ---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al---~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (557)
                         ..++..+|.+|..  .|++++|+.+|++++   ...|.+    ..+++++|.+|..+|++++|+.+++++++... .
T Consensus       152 ~~~~~~~~~lg~~y~~--~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-~  228 (293)
T 2qfc_A          152 YQNLYIENAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-R  228 (293)
T ss_dssp             THHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-h
Confidence               5689999999999  999999999999999   444543    26899999999999999999999999998543 2


Q ss_pred             hcCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccC
Q 008705          509 EREGPNMVEALIFLATHCRAHGRFEEA-EVYCTRLLDYT  546 (557)
Q Consensus       509 ~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  546 (557)
                      .........+++.+|.++..+|++++| ..+|++++.+.
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            233445688999999999999999999 88899998763

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.1e-15  Score=121.04  Aligned_cols=114  Identities=20%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      ...+..+|..+...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhcCcHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH
Q 008705          451 TEQLHMLEEAIKCYRRAANCN------DSEAIALNQLAKLHH  486 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~  486 (557)
                      .  .|++++|+..|++++.++      |.+..++..++.+..
T Consensus        84 ~--~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           84 A--VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             H--TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             H--HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            6  666666666666666666      666666665555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.64  E-value=4.8e-16  Score=129.58  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=104.8

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      ..|++++.++|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++..  .|++++|+.+|++++.++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS--LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcC
Confidence            567888899999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      |+++.+++.+|.++...|++++|+.+|+++++.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999983

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=4.1e-15  Score=121.05  Aligned_cols=116  Identities=14%  Similarity=0.139  Sum_probs=110.9

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY  415 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  415 (557)
                      .++.+..+|..+...|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhH
Q 008705          416 EMMHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYET  451 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~  451 (557)
                      ..+|++++|+..|+++++++      |.+..++..++.+...
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999      9999999888887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.63  E-value=2.2e-15  Score=130.78  Aligned_cols=130  Identities=14%  Similarity=0.229  Sum_probs=117.5

Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhCCh--HH
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA-YEMMHMP--LY  423 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~--~~  423 (557)
                      +...|++++|+..+++++..+|.+..+|..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999 8899998  99


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705          424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL  478 (557)
Q Consensus       424 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  478 (557)
                      |+.+|++++..+|+++.++..+|.++..  .|++++|+..|++++...|.++...
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFM--QANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH--cccHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999999999999999999999999  9999999999999999999875543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.63  E-value=1.5e-14  Score=129.70  Aligned_cols=133  Identities=15%  Similarity=0.115  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      ..++.+|..+...|++++|+..|++++  +| ++.++..+|.++...|++++|+..|++++..+|.+..+++.+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            456789999999999999999999986  33 678999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDS----------------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  475 (557)
                      .|++++|+..|+++++..|.+.                .++..+|.++..  .|++++|+..|++++.+.|.+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK--KEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCSGG
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH--ccCHHHHHHHHHHHHHcCcccc
Confidence            9999999999999999888766                899999999999  9999999999999999999863

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.63  E-value=1.9e-14  Score=132.87  Aligned_cols=249  Identities=10%  Similarity=-0.022  Sum_probs=189.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          242 ASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       242 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      ..-.+-.|+|..++....++   .|. .....+.+.+++..+|++....        ..+....+...++..+.  +.  
T Consensus        20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT--
T ss_pred             HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc--
Confidence            55567789999988855443   333 2346677788888888876421        11111113333333332  11  


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc--CCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--NYLSAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                       +...+++.+...+..+.++..+|.++...|++++|+..+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.
T Consensus        85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             45556666665556677788999999999999999999999999887  889999999999999999999999999999


Q ss_pred             hhCCC------ChHHHHHHHHHHHHhC--ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705          399 DINPR------DYRAWYGLGQAYEMMH--MPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAA  468 (557)
Q Consensus       399 ~~~p~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al  468 (557)
                      +.+|+      .......-|++....|  ++.+|..+|+++....|+  .+..+.+   ++..  +|++++|...++.++
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~--~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ--QRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH--HTCHHHHHHHHHHHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH--cCCHHHHHHHHHHHH
Confidence            99983      2333333355566667  999999999999988886  3334444   8888  999999999999887


Q ss_pred             hc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705          469 NC----------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI  520 (557)
Q Consensus       469 ~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (557)
                      +.          +|+++.++.+++.+...+|+  +|.++++++.+       ..|+++.+.-
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-------~~P~hp~i~d  291 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-------LDHEHAFIKH  291 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-------TTCCCHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-------hCCCChHHHH
Confidence            76          48899999999999999998  89999999998       7899886543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.63  E-value=2.4e-14  Score=135.35  Aligned_cols=168  Identities=10%  Similarity=-0.039  Sum_probs=144.8

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-----
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-----  404 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----  404 (557)
                      ....+...+..+...|++++|+..++++++..+...      ..++.+|.++...|++++|+..+++++...+..     
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            345566788899999999999999999999877644      346678999999999999999999999876543     


Q ss_pred             -hHHHHHHHHHHHHhCChHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---
Q 008705          405 -YRAWYGLGQAYEMMHMPLYALHYFRKSV---FLQPNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---  473 (557)
Q Consensus       405 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~---  473 (557)
                       ..++..+|.+|...|++++|+.+|++++   +..|++.    .++.++|.+|..  .|++++|+.++++++.+.+.   
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~--~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL--DSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCc
Confidence             5689999999999999999999999999   4456643    689999999999  99999999999999987532   


Q ss_pred             ---hHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH
Q 008705          474 ---EAIALNQLAKLHHALGRDEEA-AFYYKKDLERM  505 (557)
Q Consensus       474 ---~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  505 (557)
                         .+.+++++|.+|..+|++++| ..+|++++...
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence               277899999999999999999 88899999854

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.62  E-value=6.3e-16  Score=137.03  Aligned_cols=159  Identities=13%  Similarity=0.040  Sum_probs=122.8

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh----------------
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY----------------  405 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------  405 (557)
                      ..+......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++.+.|.++                
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            3455556677888888777766666666778888999999999999999999999999888887                


Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                      .++..+|.++..+|++++|+.+|++++.++|.++.+++.+|.++..  .|++++|+.+|++++.++|.++.++..++.++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY--FGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999  99999999999999999999999999999999


Q ss_pred             HHcCCHHHHH-HHHHHHH
Q 008705          486 HALGRDEEAA-FYYKKDL  502 (557)
Q Consensus       486 ~~~g~~~~A~-~~~~~al  502 (557)
                      ...++..++. ..|.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            8888777766 3344433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.62  E-value=1.1e-14  Score=130.41  Aligned_cols=132  Identities=15%  Similarity=0.082  Sum_probs=120.8

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..++.+|..+...|++++|+..|++++  +| ++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            457788999999999999999999985  34 788999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCChH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSEA----------------IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM  515 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (557)
                        .|++++|+..|++++...|.+.                .+++.+|.++...|++++|+.+|+++++       ..|..
T Consensus        84 --~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~  154 (213)
T 1hh8_A           84 --TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS-------MKSEP  154 (213)
T ss_dssp             --TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCSG
T ss_pred             --cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH-------cCccc
Confidence              9999999999999999877655                8999999999999999999999999998       56665

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=1.5e-14  Score=123.76  Aligned_cols=128  Identities=16%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      ..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555444455555555555


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HhHHhcCcHHHHHHHHHHH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQC--YETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~~~A~~~~~~a  467 (557)
                      .|++++|+.+|++++..+|.+..++..++.+  +..  .|++++|+..+.++
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~  143 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK--QKAFERAIAGDEHK  143 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHcccch
Confidence            5555555555555555444444444322222  333  44444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=1.9e-14  Score=147.53  Aligned_cols=158  Identities=9%  Similarity=0.065  Sum_probs=145.4

Q ss_pred             CCChhHHHHHHHHHhhhCc----------hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC--CchHHHHHHHHHHhhC
Q 008705          334 KYRPESCCIIGNYYSLKGQ----------HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK--NTPAAIDAYRRAVDIN  401 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~  401 (557)
                      |....+|...+.++...|+          +++++.+++++++.+|++..+|...+.++...+  +++++++.+.++++.+
T Consensus        60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d  139 (567)
T 1dce_A           60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD  139 (567)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc
Confidence            3355666667777776666          899999999999999999999999999999999  6699999999999999


Q ss_pred             CCChHHHHHHHHHHHHhC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc--------------CcHHHHHHHHHH
Q 008705          402 PRDYRAWYGLGQAYEMMH-MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL--------------HMLEEAIKCYRR  466 (557)
Q Consensus       402 p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--------------~~~~~A~~~~~~  466 (557)
                      |++..+|...+.+....| .++++++++.++++.+|.+..+|..++.++..  .              +.+++|++++.+
T Consensus       140 ~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~--l~~~~~~~~~~~~~~~~~~eel~~~~~  217 (567)
T 1dce_A          140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ--LHPQPDSGPQGRLPENVLLKELELVQN  217 (567)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH--HSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh--hcccccccccccccHHHHHHHHHHHHH
Confidence            999999999999999999 99999999999999999999999999999887  5              678999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705          467 AANCNDSEAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       467 al~~~p~~~~~~~~la~~~~~~g~~~~  493 (557)
                      ++.++|++..+|+.++.++...+++++
T Consensus       218 ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          218 AFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            999999999999999999999988665

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.61  E-value=2e-14  Score=122.98  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=124.9

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      ...+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQL--AKLHHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      .  .|++++|+.+|++++...|.+..++..+  +..+...|++++|+..+.++.....
T Consensus        93 ~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           93 A--LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             H--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence            9  9999999999999999999998888554  4448889999999999999887543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-14  Score=118.83  Aligned_cols=120  Identities=18%  Similarity=0.226  Sum_probs=76.7

Q ss_pred             cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705          368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ  447 (557)
Q Consensus       368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  447 (557)
                      |....++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705          448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG  489 (557)
Q Consensus       448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  489 (557)
                      ++..  .|++++|+.+|++++..+|.+..++..++.++..+|
T Consensus        93 ~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEA--MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHH--TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHH--HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            6666  666666666666666666666666666666665554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.60  E-value=3e-14  Score=134.61  Aligned_cols=169  Identities=12%  Similarity=-0.047  Sum_probs=137.4

Q ss_pred             HHHhHHHHhcCCchHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHH
Q 008705          375 TLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLW  442 (557)
Q Consensus       375 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~  442 (557)
                      ...+..+...|++++|+..+++++...+..+.      .+..+|.++...+++++|+.+|++++...+..      ..++
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            34467778889999999999998887766544      23458888888889999999999999864432      3478


Q ss_pred             HHHHHHHhHHhcCcHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705          443 IAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM  515 (557)
Q Consensus       443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (557)
                      ..+|.+|..  .|++++|+.+|++++..       .+....+++++|.+|..+|++++|+.+++++++.... ....+..
T Consensus       159 ~~lg~~y~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~-~~~~~~~  235 (293)
T 3u3w_A          159 NAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMALI  235 (293)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCTTH
T ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-cCcHHHH
Confidence            999999999  99999999999999952       2233558999999999999999999999999985433 2334556


Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHhccC
Q 008705          516 VEALIFLATHCRAHG-RFEEAEVYCTRLLDYT  546 (557)
Q Consensus       516 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  546 (557)
                      +.+++.+|.++..+| ++++|..+|++++.+.
T Consensus       236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            899999999999999 5799999999999763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.60  E-value=8.3e-16  Score=136.25  Aligned_cols=165  Identities=12%  Similarity=0.044  Sum_probs=129.6

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH------------
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS------------  439 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------------  439 (557)
                      ......+......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++.+.|.++            
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   84 (198)
T 2fbn_A            5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK   84 (198)
T ss_dssp             -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred             ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence            34445566677788888888888777776677788999999999999999999999999999999887            


Q ss_pred             ----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705          440 ----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM  515 (557)
Q Consensus       440 ----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (557)
                          .++..+|.++..  .|++++|+.++++++.++|.++.+++.+|.++..+|++++|+.+|+++++       ..|.+
T Consensus        85 ~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~  155 (198)
T 2fbn_A           85 NIEISCNLNLATCYNK--NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-------LNPNN  155 (198)
T ss_dssp             HHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTC
T ss_pred             HHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------HCCCc
Confidence                899999999999  99999999999999999999999999999999999999999999999999       68999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHH-HHHHHHhcc
Q 008705          516 VEALIFLATHCRAHGRFEEAE-VYCTRLLDY  545 (557)
Q Consensus       516 ~~~~~~la~~~~~~g~~~~A~-~~~~~al~~  545 (557)
                      ..++..++.++...|+..++. ..|.+++..
T Consensus       156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          156 LDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999998888 555555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.60  E-value=8.4e-15  Score=127.13  Aligned_cols=130  Identities=18%  Similarity=0.249  Sum_probs=118.1

Q ss_pred             HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcH--
Q 008705          381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHML--  457 (557)
Q Consensus       381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~--  457 (557)
                      +...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +..  .|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~--~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ--ASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--cCCcch
Confidence            45678999999999999999999999999999999999999999999999999999999999999999 888  9998  


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 008705          458 EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL  519 (557)
Q Consensus       458 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (557)
                      ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++       ..|.++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD-------LNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-------hCCCCccHH
Confidence            9999999999999999999999999999999999999999999999       667665433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=1.5e-14  Score=118.13  Aligned_cols=122  Identities=18%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705          368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ  447 (557)
Q Consensus       368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  447 (557)
                      |....++..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|+++.++..+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            34445555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705          448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD  491 (557)
Q Consensus       448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  491 (557)
                      ++..  .|++++|+.+|++++...|.++.++..++.++...|++
T Consensus        89 ~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSS--LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHH--hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            6666  66666666666666666666666666666666655543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.59  E-value=4.8e-14  Score=130.26  Aligned_cols=252  Identities=11%  Similarity=-0.000  Sum_probs=187.8

Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCCCcH-HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchH
Q 008705          276 AKAQYSLREFEQVEVIFEELLRNDPYRVDDM-DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE  354 (557)
Q Consensus       276 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  354 (557)
                      .+-.+..|+|..++.-   +-+..|.+.... ....+.+...|++...        ...+....+...++.++.  ++  
T Consensus        20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~~--~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFLD--TK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHHT--TT--
T ss_pred             HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHhc--cc--
Confidence            3557789999999884   344555544332 3334556666665431        011112224445555543  22  


Q ss_pred             HHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705          355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP--RDYRAWYGLGQAYEMMHMPLYALHYFRKSV  432 (557)
Q Consensus       355 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  432 (557)
                       |+..|++.+...+....++..+|.++...|++++|++.+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.
T Consensus        85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             88999998887666677788999999999999999999999999887  789999999999999999999999999999


Q ss_pred             hcCCC------CHHHHHHHHHHHhHHhcC--cHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008705          433 FLQPN------DSRLWIAMAQCYETEQLH--MLEEAIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYYKKDL  502 (557)
Q Consensus       433 ~~~p~------~~~~~~~l~~~~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al  502 (557)
                      +.+|+      .......-+++...  .|  ++.+|...|+++....|+  .+..+++   ++..+|++++|...++.++
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~--~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFA--TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHH--HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence            99883      23333334555666  66  999999999999988887  3444444   8999999999999999766


Q ss_pred             HHHHhhhc---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          503 ERMEAEER---EGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       503 ~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      +.......   .+|+++.++.+++.+....|+  +|.++++++.+..|...
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            63211000   148899999999999999998  99999999999987654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.59  E-value=3.2e-14  Score=116.63  Aligned_cols=122  Identities=18%  Similarity=0.114  Sum_probs=116.4

Q ss_pred             CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705          401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ  480 (557)
Q Consensus       401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  480 (557)
                      .|.+..+++.+|.++...|++++|+..|++++...|.++.++..+|.++..  .|++++|+.++++++...|.++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--LLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            355688999999999999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705          481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  531 (557)
                      +|.++...|++++|+.+|+++++       ..|.+..++..++.++..+|+
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALD-------LDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-------HCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH-------hCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999       688999999999999998875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.59  E-value=1.4e-16  Score=160.26  Aligned_cols=145  Identities=14%  Similarity=0.077  Sum_probs=106.4

Q ss_pred             hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---------------hHHHHHHHHH
Q 008705          350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---------------YRAWYGLGQA  414 (557)
Q Consensus       350 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~  414 (557)
                      .+++++|+..|++++...|....++..+|..++..|++++|+..|++++.++|.+               ..+|+++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4456667777777777777777777777777777777777777777777777776               5677777777


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      |..+|++++|+.+|+++++++|+++.+++.+|.++..  +|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL--MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777  77777777777777777777777777777777777777666


Q ss_pred             HH
Q 008705          495 AF  496 (557)
Q Consensus       495 ~~  496 (557)
                      ..
T Consensus       405 ~~  406 (457)
T 1kt0_A          405 DR  406 (457)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.58  E-value=1.4e-14  Score=123.90  Aligned_cols=113  Identities=16%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY  415 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  415 (557)
                      .+..++.+|.++...|++++|+.+|+++++++|.+..+|..+|.++...|++++|+..|++++.++|++..+|+.+|.++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      ..+|++++|+.+|+++++++|+++..|...+..
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            666666666666666666666665555444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.58  E-value=1.8e-14  Score=117.60  Aligned_cols=123  Identities=20%  Similarity=0.269  Sum_probs=117.4

Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      +|..+..+..+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++..+|++..+++.+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            34467888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML  457 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  457 (557)
                      .++...|++++|+.+|++++...|+++.++..+|.++..  .|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK--LREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--HhcC
Confidence            999999999999999999999999999999999999998  8764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.58  E-value=1.9e-14  Score=123.10  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=108.2

Q ss_pred             CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      ++.....+..+|.++...|++++|+..|++++.++|++..+|+.+|.+|..+|++++|+.+|+++++++|+++.+|+.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                      .++..  .|++++|+.+|++++.++|+++.++...+...
T Consensus        87 ~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           87 LARFD--MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHH--TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHH--ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            99999  99999999999999999999988766665443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.58  E-value=2e-15  Score=151.77  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=131.2

Q ss_pred             hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---------------HHHHHHHhH
Q 008705          315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---------------LSAWTLMGH  379 (557)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~  379 (557)
                      ..++++++...+.......|..+..+..+|..+...|++++|+..|++++.++|.+               ..+|.++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666667777888899999999999999999999999999999998               689999999


Q ss_pred             HHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705          380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE  459 (557)
Q Consensus       380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  459 (557)
                      ++..+|++++|+..|++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..  .+++++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~--~~~~~~  403 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK--AKEHNE  403 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH--HHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999  999988


Q ss_pred             HHHH
Q 008705          460 AIKC  463 (557)
Q Consensus       460 A~~~  463 (557)
                      |.+.
T Consensus       404 a~~~  407 (457)
T 1kt0_A          404 RDRR  407 (457)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.57  E-value=5.9e-14  Score=132.62  Aligned_cols=164  Identities=10%  Similarity=-0.052  Sum_probs=138.4

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHH------HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHH
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS------AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAW  408 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~  408 (557)
                      ...+..+...|++++|+..++++++..+..+.      .+..+|.++...|++++|+..|++++...+..      ..++
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            34567788899999999999999998776554      23358999999999999999999999965443      3378


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------H
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQ-------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------A  475 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~  475 (557)
                      ..+|.+|..+|++++|+.+|+++++..       +....++.++|.+|..  +|++++|+.++++++.+.+..      +
T Consensus       159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~--~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL--DSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            999999999999999999999999531       2234588999999999  999999999999999875432      7


Q ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q 008705          476 IALNQLAKLHHALGR-DEEAAFYYKKDLERME  506 (557)
Q Consensus       476 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  506 (557)
                      .+++.+|.++..+|+ +++|+.+|++++....
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            899999999999995 6999999999998554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.57  E-value=2.6e-14  Score=116.26  Aligned_cols=99  Identities=13%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-------HHHHHHH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-------SRLWIAM  445 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l  445 (557)
                      ++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++       ..++..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            444555555555555555555555555555555555555555555555555555555555554433       2345556


Q ss_pred             HHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          446 AQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                      |.++..  .|++++|+.+|++++...|+
T Consensus        90 g~~~~~--~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           90 GNAFQK--QNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHH--TTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHH--cCCHHHHHHHHHHHHhhCcC
Confidence            666666  66666666666666665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.56  E-value=1.6e-13  Score=110.87  Aligned_cols=116  Identities=28%  Similarity=0.533  Sum_probs=68.0

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      ..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555655555566666666666655555555555556666665


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      .  .|++++|+..|++++...|.++.++..++.++...
T Consensus        89 ~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           89 K--QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             H--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             H--hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            5  56666666666666655555555555555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.55  E-value=8.7e-14  Score=123.45  Aligned_cols=153  Identities=17%  Similarity=0.060  Sum_probs=76.5

Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCChH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI------NPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      ..|++++|...++......+....++..+|.++...|++++|+..+++++.+      .+....++..+|.++...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4566666666443333322244555566666666666666666666666552      2223444555555555555555


Q ss_pred             HHHHHHHHHHhc---CCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--h----HHHHHHHHHHHHHcC
Q 008705          423 YALHYFRKSVFL---QPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--E----AIALNQLAKLHHALG  489 (557)
Q Consensus       423 ~A~~~~~~a~~~---~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g  489 (557)
                      +|+.++++++.+   .+++    ..++..+|.++..  .|++++|+.++++++.+.+.  +    ..++..+|.++...|
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALH--FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            555555555554   2222    2344555555555  55555555555555543211  1    123455555555555


Q ss_pred             CHHHHHHHHHHHHH
Q 008705          490 RDEEAAFYYKKDLE  503 (557)
Q Consensus       490 ~~~~A~~~~~~al~  503 (557)
                      ++++|..+++++++
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.55  E-value=5.5e-14  Score=116.10  Aligned_cols=104  Identities=17%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                      +..+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++.++|+++.+++.+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            34455555555555555666666666666555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCChHHHHHHHHHHHhcCCC
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p~  437 (557)
                      ++...|++++|+..|++++.+.|+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            555555555555555555555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.55  E-value=5.9e-14  Score=115.92  Aligned_cols=121  Identities=19%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 008705          366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM  445 (557)
Q Consensus       366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  445 (557)
                      .+|..+..+..+|.++...|++++|+..|++++..+|++..++..+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            45777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHhcCcHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHc
Q 008705          446 AQCYETEQLHMLEEAIKCYRRAANCNDS-----EAIALNQLAKLHHAL  488 (557)
Q Consensus       446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~  488 (557)
                      |.++..  .|++++|+..|++++.+.|+     +..+...+..+..+.
T Consensus        84 ~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           84 GQCQLE--MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHH--TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHH--HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999  99999999999999988877     556666666555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=5.2e-14  Score=113.31  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM  418 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  418 (557)
                      .++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHHhcCCCC
Q 008705          419 HMPLYALHYFRKSVFLQPND  438 (557)
Q Consensus       419 ~~~~~A~~~~~~a~~~~p~~  438 (557)
                      |++++|+..|+++++.+|.+
T Consensus        99 g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHhCcCC
Confidence            55555555555555555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.55  E-value=1.1e-14  Score=119.98  Aligned_cols=101  Identities=19%  Similarity=0.190  Sum_probs=54.8

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhhCCC-------C-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-------
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPR-------D-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFL-------  434 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------  434 (557)
                      +..+|..+...|++++|+..|+++++++|+       +     ..+|.++|.++..+|++++|+..|++++++       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            344444444444444444444444444444       2     225555555555555555555555555555       


Q ss_pred             CCCCHHHH----HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          435 QPNDSRLW----IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       435 ~p~~~~~~----~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      +|+++.+|    +++|.++..  +|++++|+.+|++++++.|++..
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~--lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDG--LGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCchHHHHHHHHHhHHHHHHH--CCCHHHHHHHHHHHHhcCCCcHH
Confidence            66666666    666666666  66666666666666666555433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=2.4e-13  Score=109.84  Aligned_cols=115  Identities=29%  Similarity=0.569  Sum_probs=111.6

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      +.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..|++++|+.+|++++..+|.++.++..+|.++..
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.54  E-value=4.7e-14  Score=113.59  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..++.+|..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                        .|++++|+..|+++++.+|.+..
T Consensus        98 --~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 --EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             --HHHHHHHHHHHHHHHC-------
T ss_pred             --cCCHHHHHHHHHHHHHhCcCCCC
Confidence              99999999999999999998653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.53  E-value=6.8e-14  Score=124.14  Aligned_cols=156  Identities=13%  Similarity=0.110  Sum_probs=128.3

Q ss_pred             HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHh------cCcCCHHHHHHHhHHHHhcCCc
Q 008705          314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK------LDKNYLSAWTLMGHEYVEMKNT  387 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~~  387 (557)
                      ...|+++++...++.+....+..+.++..+|.++...|++++|+.++++++.      ..+....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            4567888888855555444446788999999999999999999999999998      3455667899999999999999


Q ss_pred             hHHHHHHHHHHhh---CCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHhHHhc
Q 008705          388 PAAIDAYRRAVDI---NPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--ND----SRLWIAMAQCYETEQL  454 (557)
Q Consensus       388 ~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~l~~~~~~~~~  454 (557)
                      ++|+..+++++.+   .+++    ..++..+|.++...|++++|+.++++++.+.+  .+    ..++..+|.++..  .
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~  160 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ--E  160 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH--C
Confidence            9999999999997   4433    56789999999999999999999999997642  22    2356899999999  9


Q ss_pred             CcHHHHHHHHHHHHhcC
Q 008705          455 HMLEEAIKCYRRAANCN  471 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~  471 (557)
                      |++++|+.++++++.+.
T Consensus       161 g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          161 KNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999998763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=3.3e-14  Score=117.14  Aligned_cols=110  Identities=13%  Similarity=0.142  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-------CHH-----HHHHHhHHHHhcCCchHHHHHHHHHHhh----
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-------YLS-----AWTLMGHEYVEMKNTPAAIDAYRRAVDI----  400 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~----  400 (557)
                      ...+...|+.+...|++++|+..|+++++++|+       +..     +|.++|.++..+|++++|+..|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456788999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCChHHH----HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          401 ---NPRDYRAW----YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       401 ---~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                         +|++..+|    +++|.++..+|++++|+..|++++++.|++..+...+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~  143 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE  143 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence               99999999    99999999999999999999999999998865443333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.53  E-value=1.3e-13  Score=112.07  Aligned_cols=109  Identities=13%  Similarity=0.036  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHH
Q 008705          439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA  518 (557)
Q Consensus       439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  518 (557)
                      +.++..+|.++..  .|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++..+......+....+
T Consensus         8 A~a~~~lG~~~~~--~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            8 AIAEKDLGNAAYK--QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            4567788888888  89999999999999988898888888999999999999999999999888543322223344678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          519 LIFLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       519 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      +..+|.++..+|++++|+++|++++...|+.
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            9999999999999999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=3.3e-13  Score=107.77  Aligned_cols=111  Identities=15%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      ..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      .|++++|+..|+++++.+|+++.++..++.+
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            5555555555555555555555554444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=3.5e-13  Score=107.65  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=109.3

Q ss_pred             CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      ....+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705          450 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH  485 (557)
Q Consensus       450 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  485 (557)
                      ..  .|++++|+..+++++..+|.++.++..++.+.
T Consensus        83 ~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EF--LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HH--TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HH--HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99  99999999999999999999999999888775

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.52  E-value=7.3e-14  Score=119.18  Aligned_cols=114  Identities=14%  Similarity=0.108  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhc------------------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKL------------------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                      +..+...|..++..|++++|+..|.+++.+                  +|....++.++|.++..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456777888888888888888888888887                  44444555555555555555555555555555


Q ss_pred             hhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHh
Q 008705          399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-RLWIAMAQCYE  450 (557)
Q Consensus       399 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~  450 (557)
                      .++|+++.+|+.+|.++..+|++++|+..|++++.++|+++ .+...++.+..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555 33444444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.52  E-value=8e-14  Score=118.93  Aligned_cols=118  Identities=16%  Similarity=0.146  Sum_probs=108.5

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhh------------------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDI------------------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV  432 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  432 (557)
                      ...+...|..++..|++++|+..|++++.+                  +|.+..+|.++|.+|..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567889999999999999999999999998                  66777899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCC
Q 008705          433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA-IALNQLAKLHHALGR  490 (557)
Q Consensus       433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~  490 (557)
                      .++|+++.+++.+|.++..  +|++++|+..|++++.++|+++ .+...++.+....++
T Consensus        91 ~~~p~~~~a~~~~g~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIA--AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHH--HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999  9999999999999999999998 667777777655443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.51  E-value=5.9e-11  Score=119.80  Aligned_cols=347  Identities=10%  Similarity=-0.012  Sum_probs=212.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH------------HhhcCC-C---hhHHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI------------LNSLNL-N---NHWMKD  238 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~------------~~~l~~-~---~~~~~~  238 (557)
                      .+...|..+...+-.|+++.+..+|++++...| +...|...+........            +..+.. +   ..|..+
T Consensus        13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y   91 (493)
T 2uy1_A           13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY   91 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence            344445555555555889999999999999888 77788877665433211            000110 1   112111


Q ss_pred             HHHHHHHH----HHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------------hcccHHHHHHHHHHHHHhCC
Q 008705          239 YFLASAYQ----ELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQY--------------SLREFEQVEVIFEELLRNDP  300 (557)
Q Consensus       239 ~~la~~~~----~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~~l~~~p  300 (557)
                         ...+.    ..++.+.+..+|++++..-+....-+...-..+.              ..+.+..|...|+.+....+
T Consensus        92 ---i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~  168 (493)
T 2uy1_A           92 ---IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR  168 (493)
T ss_dssp             ---HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence               11111    3466677777777777742222222211111111              11233444555555554332


Q ss_pred             C-CCCcHHHHHHHHHhc--cc-----hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHH
Q 008705          301 Y-RVDDMDMYSNVLYAK--EC-----FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS  372 (557)
Q Consensus       301 ~-~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  372 (557)
                      . ....|..+.......  +-     ...+..++++++...|..+..|+..+..+...|+.++|...|++++.. |.+..
T Consensus       169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~  247 (493)
T 2uy1_A          169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF  247 (493)
T ss_dssp             TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred             hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence            2 111222222221111  00     233456777777778888888888888888888888888888888888 87776


Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhC----------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDIN----------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW  442 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  442 (557)
                      .|...+...    +.++....+..+....          +....+|...+......+..+.|...|.++ ...+....+|
T Consensus       248 l~~~y~~~~----e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~  322 (493)
T 2uy1_A          248 LSLYYGLVM----DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVF  322 (493)
T ss_dssp             HHHHHHHHT----TCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHH
T ss_pred             HHHHHHhhc----chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHH
Confidence            666544331    1112111111111000          112356777777777788899999999999 4333456677


Q ss_pred             HHHHHHHhHHhcC-cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 008705          443 IAMAQCYETEQLH-MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF  521 (557)
Q Consensus       443 ~~l~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  521 (557)
                      ...+.+...  .+ +.+.|..+|+.+++..|+.+..+...+......|+.+.|...|+++.           .....|..
T Consensus       323 i~~A~lE~~--~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----------k~~~lw~~  389 (493)
T 2uy1_A          323 IYCAFIEYY--ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----------KTSRMWDS  389 (493)
T ss_dssp             HHHHHHHHH--HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----------CBHHHHHH
T ss_pred             HHHHHHHHH--HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHHHH
Confidence            777766665  55 58999999999999888888888888888888999999998888862           24677888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhc
Q 008705          522 LATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       522 la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      ........|+.+.+...+++++.
T Consensus       390 ~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          390 MIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888999999998888875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.3e-13  Score=111.14  Aligned_cols=117  Identities=18%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY  409 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  409 (557)
                      .+.....++.+|..+...|++++|+.+|+++++.+|++   ..++..+|.++...|++++|+..+++++..+|++..+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            34556667777777777777777777777777777765   666777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      .+|.++...|++++|+.+|++++.++|++..++..++.+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            7777777777777777777777777777766666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.49  E-value=6e-13  Score=133.27  Aligned_cols=207  Identities=10%  Similarity=-0.044  Sum_probs=171.1

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----------------HHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----------------SAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      |.+....|.-+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|++.+.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55666778888999999999999999999877642                 3578999999999999999999999998


Q ss_pred             hCCCCh------HHHHHHHHHHHHhCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          400 INPRDY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       400 ~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      ..+...      .+...+|.++...|++++|+.++++++...      +....++..+|.++..  .|++++|+.+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~l~~~  161 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ--KKQYKDSLALINDL  161 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH--HTCHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence            765442      345668888888999999999999998753      2336788999999999  99999999999998


Q ss_pred             Hhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705          468 ANC------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR  541 (557)
Q Consensus       468 l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  541 (557)
                      +..      .+....++..++.+|...|++++|..++++++................+..+|.++...|++++|..+|.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            865      33446799999999999999999999999999844332111122356788899999999999999999999


Q ss_pred             Hhcc
Q 008705          542 LLDY  545 (557)
Q Consensus       542 al~~  545 (557)
                      +++.
T Consensus       242 a~~~  245 (434)
T 4b4t_Q          242 SFES  245 (434)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=5.2e-13  Score=111.65  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=113.1

Q ss_pred             cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705          366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW  442 (557)
Q Consensus       366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  442 (557)
                      .+|.....+..+|..+...|++++|+..|+++++.+|++   ..++..+|.++...|++++|+.+|++++..+|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457788999999999999999999999999999999987   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008705          443 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA  487 (557)
Q Consensus       443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  487 (557)
                      ..+|.++..  .|++++|+.+|++++.++|++..++..++.+...
T Consensus       103 ~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEK--LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHH--HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999  9999999999999999999999998888877543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.48  E-value=9.4e-13  Score=107.30  Aligned_cols=110  Identities=16%  Similarity=0.122  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHH
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLG  412 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~  412 (557)
                      .++.+|..+...|++++|+..|+++++.+|++.   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            345556666666666666666666666666555   556666666666666666666666666666655   55566666


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      .++..+|++++|+..|++++...|+++.+......+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            666666666666666666666666555544444333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.48  E-value=1e-13  Score=133.48  Aligned_cols=137  Identities=14%  Similarity=0.145  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----------------HHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----------------SAWTLMGHEYVEMKNTPAAIDAYRRAVD  399 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~  399 (557)
                      +..+..+|..+...|++++|+.+|++++...|.+.                 .++.++|.++..+|++++|+..|++++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46678899999999999999999999999998865                 2555566666666666666666666666


Q ss_pred             hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      ++|++..+|+.+|.+|..+|++++|+..|+++++++|+++.++..++.+... ..+..+++...|.+++...|.+
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~-~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ-EKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCC
Confidence            6666666666666666666666666666666666666655555555555322 0344555555556555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=2.9e-14  Score=143.78  Aligned_cols=168  Identities=14%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      +..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++..+++.+|.+|.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HhHHhcCcHHHHHHHHH-----------HHHhcCCChH--------
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC--YETEQLHMLEEAIKCYR-----------RAANCNDSEA--------  475 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~~~A~~~~~-----------~al~~~p~~~--------  475 (557)
                      .+|++++|+..|+++++++|++..++..++.+  +..  .|++++|+..++           +++.+.|...        
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  163 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK--QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK  163 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH--HHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence            99999999999999999999999999999998  778  899999999999           7777765431        


Q ss_pred             ---HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Q 008705          476 ---IALNQLAKLHHALGR--DEEAAFYYKKDLERME  506 (557)
Q Consensus       476 ---~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~  506 (557)
                         ..+..+...+...+.  ...+...+.++.+.+.
T Consensus       164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~  199 (477)
T 1wao_1          164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLS  199 (477)
T ss_dssp             CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHc
Confidence               223333444444443  3444456666666544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.47  E-value=2.9e-13  Score=107.02  Aligned_cols=104  Identities=16%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC--ChHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR--DYRAWYGL  411 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l  411 (557)
                      |.++.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.  +..++..+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4444444445555555555555555555555554444444444555554555555555555555544444  44444444


Q ss_pred             HHHHHHh-CChHHHHHHHHHHHhcCCC
Q 008705          412 GQAYEMM-HMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       412 ~~~~~~~-~~~~~A~~~~~~a~~~~p~  437 (557)
                      |.++... |++++|+.++++++...|.
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            4444444 4444454444444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.47  E-value=1.1e-12  Score=106.84  Aligned_cols=116  Identities=15%  Similarity=0.062  Sum_probs=103.9

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY---RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMA  446 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~  446 (557)
                      +++.+|..+...|++++|+..|++++..+|++.   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            467889999999999999999999999999988   799999999999999999999999999999999   88999999


Q ss_pred             HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705          447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR  490 (557)
Q Consensus       447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  490 (557)
                      .++..  .|++++|+..|++++...|+++.+......+-...++
T Consensus        84 ~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           84 LSQYG--EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHH--TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHH--cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99999  9999999999999999999988877666665554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=5.2e-13  Score=105.56  Aligned_cols=108  Identities=17%  Similarity=0.225  Sum_probs=103.0

Q ss_pred             cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHH
Q 008705          366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN--DSRLWI  443 (557)
Q Consensus       366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~  443 (557)
                      ++|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|.  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368888899999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHhHHhc-CcHHHHHHHHHHHHhcCCChH
Q 008705          444 AMAQCYETEQL-HMLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       444 ~l~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~  475 (557)
                      .+|.++..  . |++++|++++++++...|.++
T Consensus        81 ~l~~~~~~--~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           81 AKADALRY--IEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHTT--CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHH--HhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999  9 999999999999999988753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.45  E-value=5.3e-10  Score=112.83  Aligned_cols=375  Identities=9%  Similarity=0.022  Sum_probs=226.8

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcCCch--hhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRS--VFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS  168 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  168 (557)
                      -..|--+...|=.|++++|..+|++++...+  .....|+.|.....   +.              ...+..+.......
T Consensus        15 R~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~---~~--------------~~~i~~~fe~al~~   77 (493)
T 2uy1_A           15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVS---QK--------------KFKLYEVYEFTLGQ   77 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC---------------------CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC---ch--------------HHHHHHHHHHHHHH
Confidence            5667777778888999999999999988433  33333444443211   00              01112222222222


Q ss_pred             hcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHHHhccCCCCHH-HHHHHHHhhhcHHHHhhcCCChhHHHHHHHHH
Q 008705          169 WKNGTVDPFGLYLYGIVLK----DKGNENLARTVFVESVNSYPWNWN-AWSELKSLCTSIDILNSLNLNNHWMKDYFLAS  243 (557)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~p~~~~-a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~  243 (557)
                      ...++.++.+|......+.    .+|+.+.+..+|++++..-+.+.. .|.....+.......         ..   ...
T Consensus        78 vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~---------~~---~~~  145 (493)
T 2uy1_A           78 FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI---------TG---KKI  145 (493)
T ss_dssp             STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH---------HH---HHH
T ss_pred             cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc---------cH---HHH
Confidence            3346778888888887765    357788999999999995433332 232222221111000         00   001


Q ss_pred             HHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705          244 AYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYSL-------REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA  315 (557)
Q Consensus       244 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  315 (557)
                      +-...+.+..|...|+.+....+. +...|......-...       +........|++++...|..+..|..++..+..
T Consensus       146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~  225 (493)
T 2uy1_A          146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG  225 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            111223344444444444432222 233333322221111       002344556666666666666666666666666


Q ss_pred             ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHh----------cCcCCHHHHHHHhHHHHhcC
Q 008705          316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK----------LDKNYLSAWTLMGHEYVEMK  385 (557)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------~~p~~~~~~~~l~~~~~~~~  385 (557)
                      .++.+.+..++.+++.. |.+...+...+... ..+   +....+..+..          ..+....+|...+....+.+
T Consensus       226 ~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~  300 (493)
T 2uy1_A          226 IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR  300 (493)
T ss_dssp             TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence            66666666666666666 66555554433331 111   11111111110          11123466888888888888


Q ss_pred             CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHH
Q 008705          386 NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH-MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY  464 (557)
Q Consensus       386 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~  464 (557)
                      +.+.|...|.++ ...+.....|...+.+....+ +.+.|...|+.+++..|+++..|...+.....  .|+.+.|...|
T Consensus       301 ~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~--~~~~~~aR~l~  377 (493)
T 2uy1_A          301 GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR--IGDEENARALF  377 (493)
T ss_dssp             CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHH
T ss_pred             CHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHH
Confidence            999999999999 443345667777777766666 69999999999999999999998888888888  99999999999


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705          465 RRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      +++    +.....|......-...|+.+.+...+++++..+.
T Consensus       378 er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          378 KRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK  415 (493)
T ss_dssp             HHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence            998    34567788888888888999999999999998554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.45  E-value=3.3e-13  Score=110.85  Aligned_cols=92  Identities=21%  Similarity=0.214  Sum_probs=72.3

Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch----------HHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP----------AAIDAYRRAVDINPRDYRAWYGLGQAYEMM  418 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  418 (557)
                      +.+.+++|+..++++++++|+++.+|+++|.++...++++          +|+..|+++++++|++..+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            4567888999999999999999999999998888887754          888888888888888888888888888776


Q ss_pred             C-----------ChHHHHHHHHHHHhcCCCCHH
Q 008705          419 H-----------MPLYALHYFRKSVFLQPNDSR  440 (557)
Q Consensus       419 ~-----------~~~~A~~~~~~a~~~~p~~~~  440 (557)
                      |           ++++|+.+|+++++++|++..
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            4           666677777777666666543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.44  E-value=7.4e-13  Score=107.93  Aligned_cols=112  Identities=12%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-------HHHHHH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-------SRLWIA  444 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~  444 (557)
                      ..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+       +.++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555555554443       455555


Q ss_pred             HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      +|.++..  .|++++|+.+|++++...| ++.....++.+..
T Consensus        85 la~~~~~--~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           85 IGNSYFK--EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHH--TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHH--hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            5555555  5555555555555555555 3444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.44  E-value=7.2e-13  Score=108.01  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=107.9

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-------hHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-------YRAW  408 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~  408 (557)
                      .+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            357788999999999999999999999999999999999999999999999999999999999998877       8899


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      +.+|.++...|++++|+.+|++++...| ++..+..++.+...
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 68888888887765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.44  E-value=1.2e-13  Score=132.92  Aligned_cols=134  Identities=10%  Similarity=0.106  Sum_probs=94.5

Q ss_pred             cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHhCChHHHHHHHHH
Q 008705          368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY-----------------RAWYGLGQAYEMMHMPLYALHYFRK  430 (557)
Q Consensus       368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~  430 (557)
                      +.....+..+|..+...|++++|+..|++++...|.+.                 .+|+++|.+|..+|++++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33456788999999999999999999999999999876                 4899999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 008705          431 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL-HHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       431 a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~  503 (557)
                      +++++|+++.+++.+|.++..  +|++++|+.+|++++.++|++..++..++.+ ....+..+++...|.+++.
T Consensus       256 al~~~p~~~~a~~~lg~a~~~--~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAE--LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999  9999999999999999999999999999998 4456778888999999988

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.43  E-value=3.6e-14  Score=143.11  Aligned_cols=125  Identities=15%  Similarity=0.090  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      ++..+|.++...|++++|+.+|+++++++|+++.++..+|.++..  +|++++|+..++++++++|.++.+++++|.+|.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344556666666666666666666666666666666666666666  666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 008705          487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH--CRAHGRFEEAEVYCT  540 (557)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~  540 (557)
                      .+|++++|+..|+++++       ..|++..++..++.+  +.+.|++++|++.++
T Consensus        86 ~~g~~~eA~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           86 ALGKFRAALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHTCHHHHHHHHHHHHH-------HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            66666666666666666       455555566666665  666666666666666

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.42  E-value=1.7e-12  Score=126.13  Aligned_cols=139  Identities=14%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      +..+..+|..+...|++++|+..|+++++..+...                  +..........+|.+..+|.++|.+|.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            35577788889999999999999999888432211                  001122222344444555555555555


Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA  495 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  495 (557)
                      .+|++++|+.+++++++++|+++.+++.+|.++..  +|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG--LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555  555555555555555555555555555555555555555544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.7e-12  Score=128.45  Aligned_cols=218  Identities=13%  Similarity=0.069  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh
Q 008705          270 YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL  349 (557)
Q Consensus       270 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  349 (557)
                      ......|..+...|+|++|++.|.++++..|...+.....+......+                 ....++..+|.+|..
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~al~~l~~~y~~   67 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN-----------------EQETSILELGQLYVT   67 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHH
Confidence            456677888899999999999999999998876543221110000000                 012346779999999


Q ss_pred             hCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC------ChHHHHHHHHHHHH
Q 008705          350 KGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR------DYRAWYGLGQAYEM  417 (557)
Q Consensus       350 ~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~  417 (557)
                      .|++++|+.++.+++...+...      .+...+|.++...|++++|+..+++++...+.      ...++..+|.+|..
T Consensus        68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  147 (434)
T 4b4t_Q           68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ  147 (434)
T ss_dssp             HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            9999999999999988765433      23556788888889999999999999875332      26688899999999


Q ss_pred             hCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC---Ch----HHHHHHHHHH
Q 008705          418 MHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND---SE----AIALNQLAKL  484 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~la~~  484 (557)
                      .|++++|+.++++++...      +....++..+|.+|..  .|++++|..++++++...+   ..    ...+..+|.+
T Consensus       148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~  225 (434)
T 4b4t_Q          148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK--LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL  225 (434)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence            999999999999987652      3336688999999999  9999999999999987632   11    3467788999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHH
Q 008705          485 HHALGRDEEAAFYYKKDLERME  506 (557)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~~~~  506 (557)
                      +...|++++|..+|.++++...
T Consensus       226 ~~~~~~y~~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          226 HCEDKDYKTAFSYFFESFESYH  247 (434)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHhh
Confidence            9999999999999999987543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=6.7e-13  Score=109.07  Aligned_cols=92  Identities=11%  Similarity=0.149  Sum_probs=85.7

Q ss_pred             HhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          382 VEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP----------LYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       382 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      .+.+.+++|++.++++++++|+++.+|+++|.++..++++          ++|+..|+++++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3556799999999999999999999999999999998875          599999999999999999999999999998


Q ss_pred             HhcC-----------cHHHHHHHHHHHHhcCCChH
Q 008705          452 EQLH-----------MLEEAIKCYRRAANCNDSEA  475 (557)
Q Consensus       452 ~~~~-----------~~~~A~~~~~~al~~~p~~~  475 (557)
                        +|           ++++|+.+|++|++++|++.
T Consensus        93 --lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           93 --FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             --HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             --hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence              75           89999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.41  E-value=1.6e-12  Score=126.37  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=98.8

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE  450 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  450 (557)
                      ...+..+|..+...|++++|+..|+++++..+...                  +.....+.....|.+..++.++|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999998654321                  112244555677888999999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      .  +|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++.
T Consensus       285 ~--~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          285 K--MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             H--TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             h--ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            9  999999999999999999999999999999999999999999999999985

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.41  E-value=3.7e-13  Score=107.71  Aligned_cols=94  Identities=12%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             hCchHHHHHHHHHHHhc---CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705          350 KGQHEKSVVYFRRALKL---DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       350 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                      .|++++|+.+|+++++.   +|++..++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46667777777777776   466667777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHH
Q 008705          427 YFRKSVFLQPNDSRLWI  443 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~  443 (557)
                      .|++++...|+++.+..
T Consensus        83 ~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHhCCCcHHHHH
Confidence            77777777777665543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.40  E-value=2.2e-12  Score=109.43  Aligned_cols=138  Identities=18%  Similarity=0.157  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------
Q 008705          406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------  473 (557)
Q Consensus       406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------  473 (557)
                      .++..+|.++...|++++|+.++++++...+..      ..++..+|.++..  .|++++|+.++++++...+.      
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            455666777777777777777777766654321      2467778888888  88888888888888776432      


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          474 EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      ...++..+|.++...|++++|+.+++++++..... ...+....++..+|.++...|++++|..++++++++.
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            25578889999999999999999999998854332 2235567788999999999999999999999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=4.2e-13  Score=107.39  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=85.9

Q ss_pred             hcCCchHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705          383 EMKNTPAAIDAYRRAVDI---NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE  459 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  459 (557)
                      ..|++++|+..|+++++.   +|++..++..+|.+|..+|++++|+.+|+++++.+|+++.++..+|.++..  .|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN--LGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH--cCCHHH
Confidence            468999999999999999   588899999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHHhcCCChHHHHHHH
Q 008705          460 AIKCYRRAANCNDSEAIALNQL  481 (557)
Q Consensus       460 A~~~~~~al~~~p~~~~~~~~l  481 (557)
                      |+..|++++...|+++.+....
T Consensus        80 A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHH
Confidence            9999999999999988765433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.34  E-value=6e-12  Score=106.71  Aligned_cols=137  Identities=20%  Similarity=0.280  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                      .++..+|.++...|++++|+.+++++++..+...      .++..+|.++...|++++|+..+++++...+....     
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----   84 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----   84 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence            3455566666666666666666666665533211      23444445555555555555555444443222100     


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC------ChHHHHHHHHHHH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND------SEAIALNQLAKLH  485 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~  485 (557)
                                             .+....++..+|.++..  .|++++|+.++++++...+      ....++..+|.++
T Consensus        85 -----------------------~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  139 (164)
T 3ro3_A           85 -----------------------RAVEAQSCYSLGNTYTL--LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  139 (164)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----------------------cHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence                                   00013345556666666  6666666666666654421      1234566667777


Q ss_pred             HHcCCHHHHHHHHHHHHHH
Q 008705          486 HALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~  504 (557)
                      ...|++++|..+++++++.
T Consensus       140 ~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          140 TALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHH
Confidence            7777777777777666653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.21  E-value=9.2e-11  Score=93.23  Aligned_cols=82  Identities=18%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705          355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL  434 (557)
Q Consensus       355 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  434 (557)
                      +|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+..|++++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CC
Q 008705          435 QP  436 (557)
Q Consensus       435 ~p  436 (557)
                      .|
T Consensus        83 ~~   84 (115)
T 2kat_A           83 AQ   84 (115)
T ss_dssp             HH
T ss_pred             cc
Confidence            44

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.21  E-value=8.3e-11  Score=93.49  Aligned_cols=85  Identities=14%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       388 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      ++|+..|++++..+|+++.+++.+|.++...|++++|+.+|++++..+|.++.+|..+|.++..  .|++++|+..|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG--QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence            4688899999999999999999999999999999999999999999999999999999999999  99999999999999


Q ss_pred             HhcCCCh
Q 008705          468 ANCNDSE  474 (557)
Q Consensus       468 l~~~p~~  474 (557)
                      +.+.|..
T Consensus        80 l~~~~~~   86 (115)
T 2kat_A           80 LAAAQSR   86 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHhcccc
Confidence            9887753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.6e-11  Score=96.88  Aligned_cols=92  Identities=11%  Similarity=0.068  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYG  410 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  410 (557)
                      +..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666655      555555


Q ss_pred             HHHHHHHhCChHHHHHHH
Q 008705          411 LGQAYEMMHMPLYALHYF  428 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~  428 (557)
                      +|.++..+|+++.|+..+
T Consensus        84 ~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHhHhhhHhHH
Confidence            555555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.8e-11  Score=96.52  Aligned_cols=92  Identities=9%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHH
Q 008705          371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIA  444 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~  444 (557)
                      ..++..+|.++...|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|+++++++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666665      555666


Q ss_pred             HHHHHhHHhcCcHHHHHHHH
Q 008705          445 MAQCYETEQLHMLEEAIKCY  464 (557)
Q Consensus       445 l~~~~~~~~~~~~~~A~~~~  464 (557)
                      +|.++..  .|++++|+..+
T Consensus        84 ~~~~~~~--~~~~~~a~~~~  101 (111)
T 2l6j_A           84 LELAQGA--VGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHH--HHCCCCCSSSS
T ss_pred             HHHHHHH--HHhHhhhHhHH
Confidence            6666665  55555554433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.14  E-value=4e-10  Score=85.02  Aligned_cols=77  Identities=29%  Similarity=0.570  Sum_probs=32.1

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      ++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|+++++++|+++.++..+|.++
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.14  E-value=3.5e-10  Score=85.35  Aligned_cols=85  Identities=28%  Similarity=0.491  Sum_probs=80.9

Q ss_pred             CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705          403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA  482 (557)
Q Consensus       403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  482 (557)
                      .+..+++.+|.++...|++++|+.+|++++...|.++.++..+|.++..  .|++++|+.+|++++..+|.++.++..+|
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3577899999999999999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHcC
Q 008705          483 KLHHALG  489 (557)
Q Consensus       483 ~~~~~~g  489 (557)
                      .++...|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.08  E-value=1.8e-09  Score=88.64  Aligned_cols=113  Identities=13%  Similarity=0.046  Sum_probs=82.4

Q ss_pred             CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHH
Q 008705          419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEA  494 (557)
Q Consensus       419 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A  494 (557)
                      +++++|+.+|+++.+.......    +|.+|..  .+..++|+.+|+++.+.  .++.+++++|.+|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~--g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNS--QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCT--TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHc--CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            4567777777777776543333    7777777  77777788888877765  567777778888777    7788888


Q ss_pred             HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCC
Q 008705          495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  548 (557)
                      +.+|+++.+       .  .++.+++.||.+|..    .+++++|..+|+++.+...+
T Consensus        81 ~~~~~~Aa~-------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           81 AQYYSKACG-------L--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHH-------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHc-------C--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            888888776       2  456777788888877    77888888888888776544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.03  E-value=1.9e-09  Score=107.81  Aligned_cols=132  Identities=12%  Similarity=0.041  Sum_probs=112.0

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCCh---
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFL-----QPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSE---  474 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---  474 (557)
                      .+..+..+|++++|+..+++++++     .|++   ..++.++|.+|..  +|+|++|+.++++++.+     .|++   
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~--~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY--LQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            444566789999999999999875     3455   4578899999999  99999999999999875     3444   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE-EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      ...+++||.+|..+|++++|+.+|+++++..... +...|...+....++.++..+|.+++|...|.++.+
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5589999999999999999999999999966654 456688888899999999999999999999999865

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=1.1e-09  Score=84.46  Aligned_cols=69  Identities=23%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      +|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|..+|.++..  .|++++|+..|++++.+.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER--LDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhh
Confidence            455555555555555555555555555555555555555555555555555  555555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=1.5e-09  Score=83.62  Aligned_cols=70  Identities=17%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705          367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      +|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            5666667777777777777777777777777777777777777777777777777777777777766544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.98  E-value=2.1e-08  Score=94.22  Aligned_cols=132  Identities=9%  Similarity=-0.007  Sum_probs=101.6

Q ss_pred             HHHHHHhhh---CchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC----CchHHHH----HHHH--HHhhCCCChHHH
Q 008705          342 IIGNYYSLK---GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK----NTPAAID----AYRR--AVDINPRDYRAW  408 (557)
Q Consensus       342 ~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~----~~~~--al~~~p~~~~~~  408 (557)
                      ..|..+...   ..+.+|+.+|+++++++|++..++..++.+|....    .......    .++.  ++..+|.++.++
T Consensus       201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~  280 (372)
T 3ly7_A          201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY  280 (372)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHH
Confidence            344444443   44689999999999999999999888877775221    1111112    2221  224678889999


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      ..++..+...|++++|+..+++++.++|+ ...|..+|.++..  .|++++|+..|++|+.++|..+.
T Consensus       281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~--~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          281 QIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM--KGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCcCh
Confidence            99999998899999999999999999974 7788899999999  99999999999999999998764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.98  E-value=7.9e-10  Score=84.99  Aligned_cols=90  Identities=19%  Similarity=0.285  Sum_probs=62.9

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHH-HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS-AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      +..|..+...|++++|+..|+++++.+|.+.. +++.+|.++...|++++|+..|++++.++|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            34666777777777777777777777777777 77777777777777777777777777777777766633        4


Q ss_pred             ChHHHHHHHHHHHhcCCCC
Q 008705          420 MPLYALHYFRKSVFLQPND  438 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~  438 (557)
                      .+.+++..|+++...+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            4556666666666555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.95  E-value=2.4e-08  Score=81.89  Aligned_cols=88  Identities=20%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM-  417 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-  417 (557)
                      +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.||.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            455555444555555555555543  344555555555554    45555555555555543  345555555555555 


Q ss_pred             ---hCChHHHHHHHHHHHhc
Q 008705          418 ---MHMPLYALHYFRKSVFL  434 (557)
Q Consensus       418 ---~~~~~~A~~~~~~a~~~  434 (557)
                         .+++++|+.+|+++.+.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHHC
Confidence               45555555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.92  E-value=9.9e-08  Score=85.80  Aligned_cols=106  Identities=17%  Similarity=0.102  Sum_probs=68.7

Q ss_pred             cCcCCHHHHHHHhHHHHh-----cCC------chHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHh-----CChHHHHHH
Q 008705          366 LDKNYLSAWTLMGHEYVE-----MKN------TPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMM-----HMPLYALHY  427 (557)
Q Consensus       366 ~~p~~~~~~~~l~~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~~  427 (557)
                      .+|+++++++..|.+...     .|.      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            356666665555544322     122      35667777777777776  455777777777764     777777777


Q ss_pred             HHHHHhcCCCC-HHHHHHHHHHHhHHhc-CcHHHHHHHHHHHHhcCCC
Q 008705          428 FRKSVFLQPND-SRLWIAMAQCYETEQL-HMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       428 ~~~a~~~~p~~-~~~~~~l~~~~~~~~~-~~~~~A~~~~~~al~~~p~  473 (557)
                      |+++++++|+. ..+++.+|..+..  . |++++|.+++++++...|.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~--~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCI--PLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTT--TTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCC
Confidence            77777777754 7777777777665  4 6777777777777776655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.90  E-value=6.9e-09  Score=103.74  Aligned_cols=126  Identities=13%  Similarity=-0.015  Sum_probs=102.7

Q ss_pred             HhHHHHhcCCchHHHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----CCCCH---H
Q 008705          377 MGHEYVEMKNTPAAIDAYRRAVDI-----NPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFL-----QPNDS---R  440 (557)
Q Consensus       377 l~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~---~  440 (557)
                      .+..+..+|++++|+..+++++++     .|++   ..++.+||.+|..+|+|++|+.++++++.+     .|+++   .
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            344566789999999999999875     3444   567889999999999999999999999875     35554   4


Q ss_pred             HHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          441 LWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEA---IALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      .++++|.+|..  +|++++|+.+|++|+.+     .|+++   .....++.++..++.+++|...|.++.+.
T Consensus       395 ~l~nLa~~~~~--~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          395 AVMRAGLTNWH--AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999  99999999999999875     45554   46778999999999999999999998774

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.89  E-value=5.8e-08  Score=91.27  Aligned_cols=145  Identities=15%  Similarity=0.015  Sum_probs=111.7

Q ss_pred             HHhcCcCCHHH--HHHHhHHHHhcCC---chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh----HHHHH----HHH
Q 008705          363 ALKLDKNYLSA--WTLMGHEYVEMKN---TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP----LYALH----YFR  429 (557)
Q Consensus       363 al~~~p~~~~~--~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----~~A~~----~~~  429 (557)
                      +....|.+..+  ++..|..++..++   ..+|+.+|+++++++|+...++..++.+|......    .....    .++
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~  265 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID  265 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence            33445665554  3455666665544   57899999999999999999999888888532111    11111    122


Q ss_pred             --HHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705          430 --KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA  507 (557)
Q Consensus       430 --~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (557)
                        .++...|.++.++..++..+..  .|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.    
T Consensus       266 a~~a~~~~~~~a~~~~alal~~l~--~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr----  338 (372)
T 3ly7_A          266 NIVTLPELNNLSIIYQIKAVSALV--KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN----  338 (372)
T ss_dssp             HHHTCGGGTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred             HHHhcccCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----
Confidence              2335679999999999999998  99999999999999999975 67888999999999999999999999999    


Q ss_pred             hhcCCcchHH
Q 008705          508 EEREGPNMVE  517 (557)
Q Consensus       508 ~~~~~~~~~~  517 (557)
                         .+|..+.
T Consensus       339 ---L~P~~~t  345 (372)
T 3ly7_A          339 ---LRPGANT  345 (372)
T ss_dssp             ---HSCSHHH
T ss_pred             ---cCCCcCh
Confidence               6787653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.88  E-value=5.8e-08  Score=87.27  Aligned_cols=110  Identities=16%  Similarity=0.023  Sum_probs=93.3

Q ss_pred             HhcCCCCHHHHHHHHHHHhH---------HhcCcHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHc-----CCHHHHH
Q 008705          432 VFLQPNDSRLWIAMAQCYET---------EQLHMLEEAIKCYRRAANCNDS--EAIALNQLAKLHHAL-----GRDEEAA  495 (557)
Q Consensus       432 ~~~~p~~~~~~~~l~~~~~~---------~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~  495 (557)
                      -+.+|+++..++..|.+...         +..+...+|...++++++++|+  +..++..+|.+|...     |+.++|.
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            34578888877777666543         0123467899999999999999  677999999999995     9999999


Q ss_pred             HHHHHHHHHHHhhhcCCcch-HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCC
Q 008705          496 FYYKKDLERMEAEEREGPNM-VEALIFLATHCRA-HGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       496 ~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  548 (557)
                      .+|+++++       ..|+. ..+++.+|..+.. .|++++|..++++++..+|.
T Consensus       225 ~~ferAL~-------LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          225 TAFEHLTR-------YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHH-------HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHH-------hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            99999999       68875 9999999999988 49999999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.88  E-value=4.5e-09  Score=80.65  Aligned_cols=92  Identities=16%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHH-HHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705          179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWN-AWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK  257 (557)
Q Consensus       179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~  257 (557)
                      .+..|..+...|++++|+..|+++++.+|.+.. +|..+                         |.++...|++++|+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l-------------------------g~~~~~~~~~~~A~~~   57 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLM-------------------------GNAYRKLGDWQKALNN   57 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHH-------------------------HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH-------------------------HHHHHHcCCHHHHHHH
Confidence            356788888888888999999888888888877 77655                         8888888888888888


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705          258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV  303 (557)
Q Consensus       258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  303 (557)
                      |+++++.+|++..++..        +.+.+++..|++++..+|.+.
T Consensus        58 ~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           58 YQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            88888888888776643        677788888888877777654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.68  E-value=1.5e-07  Score=70.66  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=35.8

Q ss_pred             CCChhHHHHHHHHHhhhCc---hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705          334 KYRPESCCIIGNYYSLKGQ---HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR  403 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  403 (557)
                      |.+++.+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+..|+++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4444555555555443333   455555555555555555555555555555555555555555555555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=1.9e-07  Score=70.06  Aligned_cols=71  Identities=7%  Similarity=-0.065  Sum_probs=46.6

Q ss_pred             CcCCHHHHHHHhHHHHhcCC---chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705          367 DKNYLSAWTLMGHEYVEMKN---TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN  437 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  437 (557)
                      +|+++..+..+|.+++..++   .++|...+++++..+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666666666666654444   566666666666666666666666666666666666666666666666665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.57  E-value=4e-07  Score=73.78  Aligned_cols=94  Identities=13%  Similarity=-0.030  Sum_probs=62.1

Q ss_pred             chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC---CchHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHhCChHHHHH
Q 008705          352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK---NTPAAIDAYRRAVDIN-P-RDYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                      ....+.+.|.+.+..++.+.++.+.+|.++...+   +.++++..++..++.+ | ++.+.+|.+|..+.++|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3445556666666666666777777777777766   4557777777777766 5 446667777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHH
Q 008705          427 YFRKSVFLQPNDSRLWIAM  445 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l  445 (557)
                      ++++++++.|++..+....
T Consensus        93 y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHH
Confidence            7777777777766554443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.56  E-value=5.6e-06  Score=83.41  Aligned_cols=166  Identities=9%  Similarity=0.003  Sum_probs=130.4

Q ss_pred             Chh-HHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCC---------chHHHHHHHHHHhhC-CC
Q 008705          336 RPE-SCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKN---------TPAAIDAYRRAVDIN-PR  403 (557)
Q Consensus       336 ~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~al~~~-p~  403 (557)
                      .|+ .+..+-..+.+.|+.++|+..|+++.+.. +-+..+|..+-..+...+.         .+.|.+.|++..... +.
T Consensus        24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P  103 (501)
T 4g26_A           24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP  103 (501)
T ss_dssp             CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence            344 35556678889999999999999988764 2346677777777765554         577888998887643 22


Q ss_pred             ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHHHH
Q 008705          404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQL  481 (557)
Q Consensus       404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  481 (557)
                      +..+|..+...|.+.|++++|..+|+++.+.. ..+...|..+-..|.+  .|+.++|.++|++..+.. ..+...+..+
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~--~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L  181 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR--KGDADKAYEVDAHMVESEVVPEEPELAAL  181 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            67788889999999999999999999887653 3367788888889998  999999999999887753 2346678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 008705          482 AKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ...+.+.|+.++|.+++++..+
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHH
Confidence            9999999999999999998776

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.56  E-value=4.9e-08  Score=79.41  Aligned_cols=126  Identities=11%  Similarity=0.073  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCCCccccccc
Q 008705           10 ELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDEVE   89 (557)
Q Consensus        10 ~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (557)
                      -|++.++++.+.|||++++.++++|+++...++...+.                                       ...
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp---------------------------------------~~~   62 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP---------------------------------------PQK   62 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH---------------------------------------HHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH---------------------------------------HHH
Confidence            47899999999999999999999999997543221000                                       012


Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHH-HhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALY-LAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS  168 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  168 (557)
                      ....+++|.++|..|+|.+|...|++++.......+.-+.. ..+.        +  +...                 . 
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~--------~--ss~p-----------------~-  114 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN--------S--ASTP-----------------Q-  114 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------------------------------------
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc--------c--CCCc-----------------c-
Confidence            35677889999999999999999998754221111110000 0000        0  0000                 0 


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008705          169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVES  202 (557)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  202 (557)
                      ....+.+.++.|.++.|+.+.|++++|+..++.+
T Consensus       115 s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          115 SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            0012456789999999999999999999998875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.54  E-value=6.3e-07  Score=88.28  Aligned_cols=114  Identities=14%  Similarity=0.078  Sum_probs=92.6

Q ss_pred             HHHHhCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCCh---HHH
Q 008705          414 AYEMMHMPLYALHYFRKSVFL-----QPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSE---AIA  477 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~  477 (557)
                      -+..+|++++|+..+++++++     .|++   ..++.++|.+|..  +|++++|+.++++++.+     .|++   ...
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~--~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN--LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            355688999999999999875     3455   4578899999999  99999999999999875     3444   458


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-hcCCcchHHHHHHHHHHHHHc
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAE-EREGPNMVEALIFLATHCRAH  529 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~  529 (557)
                      +++||.+|..+|++++|+.+|+++++..... +...|....++.+|+.+...+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999976654 445677777778888877654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.53  E-value=3.2e-07  Score=90.14  Aligned_cols=92  Identities=12%  Similarity=-0.009  Sum_probs=81.1

Q ss_pred             cCcHHHHHHHHHHHHhc-----CCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hhcCCcchHHHHHHHHH
Q 008705          454 LHMLEEAIKCYRRAANC-----NDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA-EEREGPNMVEALIFLAT  524 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~la~  524 (557)
                      .|+|++|+..+++++.+     .|++   ..++.++|.+|..+|++++|+.+++++++...+ .+...|+....+.+||.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            78999999999999875     4555   457899999999999999999999999996554 34567888999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhcc
Q 008705          525 HCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       525 ~~~~~g~~~~A~~~~~~al~~  545 (557)
                      +|..+|++++|..+|++++++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHH
Confidence            999999999999999999986

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.52  E-value=8.4e-07  Score=68.40  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=51.7

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC-------cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLD-------KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW  408 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  408 (557)
                      ++.-|+.+|..++..|+|..|+..|++|++..       +....++..+|.++.++|+++.|+..+++++.+.|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45667778888888888888888888877653       22345566666666666666666666666666666666665


Q ss_pred             HHHH
Q 008705          409 YGLG  412 (557)
Q Consensus       409 ~~l~  412 (557)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.52  E-value=3.1e-05  Score=77.95  Aligned_cols=162  Identities=9%  Similarity=-0.046  Sum_probs=132.3

Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHhhC-CCChhHHHHHHHHHhhhC---------chHHHHHHHHHHHhcC-cCCHHHHH
Q 008705          307 DMYSNVLYAKECFSALSYLAHRVFMTD-KYRPESCCIIGNYYSLKG---------QHEKSVVYFRRALKLD-KNYLSAWT  375 (557)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~  375 (557)
                      ......+...|+.+++..++..+.... +.+..+|..+-..+...+         ..++|...|++..... +-+..+|.
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn  109 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT  109 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            334455567899999999999887653 346677777777776544         4688999999987754 23577899


Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHh
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQ  453 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~  453 (557)
                      .+...|.+.|++++|..+|++..+.. ..+..+|..+...|.+.|+.++|..+|+++.+.. ..+...|..+..++.+  
T Consensus       110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~--  187 (501)
T 4g26_A          110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD--  187 (501)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh--
Confidence            99999999999999999999988753 2378889999999999999999999999998754 3357889999999999  


Q ss_pred             cCcHHHHHHHHHHHHhc
Q 008705          454 LHMLEEAIKCYRRAANC  470 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~  470 (557)
                      .|+.++|.+++++..+.
T Consensus       188 ~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.48  E-value=1.6e-06  Score=70.20  Aligned_cols=79  Identities=14%  Similarity=-0.000  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC---cHHHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705          423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---MLEEAIKCYRRAANCN-D-SEAIALNQLAKLHHALGRDEEAAFY  497 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  497 (557)
                      .+...|.+.+..++.+..+.+.+|+++.+  .+   +.++++..++..++.+ | ...++++++|..+.+.|+|++|..+
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~--S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVR--SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            34444444445455555555555555555  44   3445555555555554 4 3345555555555555555555555


Q ss_pred             HHHHHH
Q 008705          498 YKKDLE  503 (557)
Q Consensus       498 ~~~al~  503 (557)
                      ++++++
T Consensus        94 ~~~lL~   99 (152)
T 1pc2_A           94 VRGLLQ   99 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555555

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.47  E-value=8.6e-07  Score=68.35  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      +.-.+.+|..++..|++..|+.+|+++++.........+..+.++..+|.++.++|++++|+.+++++++++|.+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            4567899999999999999999999999965443323457889999999999999999999999999999987664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.46  E-value=6.4e-07  Score=88.04  Aligned_cols=102  Identities=16%  Similarity=0.078  Sum_probs=77.9

Q ss_pred             HhCChHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCCh---HHHHHH
Q 008705          417 MMHMPLYALHYFRKSVFL-----QPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSE---AIALNQ  480 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~  480 (557)
                      ..|++++|+..|++++++     .|+++   .++.++|.+|..  +|+|++|+.++++++.+     .|++   ...+++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~--~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY--MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            457888999999888874     45554   467889999999  99999999999999875     3444   457899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhh-hcCCcchHHHHH
Q 008705          481 LAKLHHALGRDEEAAFYYKKDLERMEAE-EREGPNMVEALI  520 (557)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~  520 (557)
                      ||.+|..+|++++|+.+|+++++..... +...|...++..
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~  428 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ  428 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            9999999999999999999999966543 233344444433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.36  E-value=3.4e-06  Score=83.06  Aligned_cols=95  Identities=17%  Similarity=0.116  Sum_probs=83.0

Q ss_pred             HhHHhcCcHHHHHHHHHHHHhc-----CCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hhcCCcchHHHH
Q 008705          449 YETEQLHMLEEAIKCYRRAANC-----NDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA-EEREGPNMVEAL  519 (557)
Q Consensus       449 ~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~  519 (557)
                      +..  .|++++|+..+++++.+     .|++   ..++.++|.+|..+|++++|+.++++++..... .+...|.....+
T Consensus       297 ~~~--~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          297 LKA--HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHH--TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHh--hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            445  89999999999999975     3444   458899999999999999999999999986554 346678889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          520 IFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       520 ~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      ++||.+|..+|++++|..+|++++++
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999875

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.07  E-value=4e-05  Score=60.86  Aligned_cols=108  Identities=14%  Similarity=0.178  Sum_probs=85.7

Q ss_pred             cCCCCHHHHHHHHHHHhHHhcCcH------HHHHHHHHHHHhcCCCh--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705          434 LQPNDSRLWIAMAQCYETEQLHML------EEAIKCYRRAANCNDSE--------AIALNQLAKLHHALGRDEEAAFYYK  499 (557)
Q Consensus       434 ~~p~~~~~~~~l~~~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~  499 (557)
                      +.|++++.|.........  .|+.      ++-+..|++|+..-|..        ...|...|.. ...++.++|...|+
T Consensus         8 ~~p~~yd~W~~yl~llE~--~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEK--NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             --CCSHHHHHHHHHHHHH--HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHH--cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            468888888888888887  7887      77788888888766542        3356666644 56689999999999


Q ss_pred             HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705          500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF  551 (557)
Q Consensus       500 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  551 (557)
                      .+++.       ....+.+|...|....++|+...|.+.+.+++...|.+.+
T Consensus        85 ~a~~~-------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           85 MARAN-------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHH-------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHHH-------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            99983       3445999999999999999999999999999999876653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.01  E-value=0.00014  Score=57.79  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             CcCCHHHHHHHhHHHHhcCCc------hHHHHHHHHHHhhCCCC--------hHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705          367 DKNYLSAWTLMGHEYVEMKNT------PAAIDAYRRAVDINPRD--------YRAWYGLGQAYEMMHMPLYALHYFRKSV  432 (557)
Q Consensus       367 ~p~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~  432 (557)
                      .|++++.|..........|+.      +.-++.|++|+..-|..        ...|...+.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            344444444444444444444      44444444444433321        2233333322 33355555555555555


Q ss_pred             hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      .+....+.+|...|..-.+  +|+...|.+.+.+++.+.|..
T Consensus        88 ~~hKkFAKiwi~~AqFEiR--qgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELS--QGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHhHHHHHHHHHHHHHHHH--cccHHHHHHHHHHHhccCCCc
Confidence            5544455555555555555  555555555555555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.93  E-value=8e-05  Score=57.98  Aligned_cols=90  Identities=12%  Similarity=-0.023  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHHhCChHHHHHHH
Q 008705          354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA---AIDAYRRAVDIN-P-RDYRAWYGLGQAYEMMHMPLYALHYF  428 (557)
Q Consensus       354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~~  428 (557)
                      ..+...|.+.+..++....+.+.+|+++....+...   ++.+++..+..+ | ..-+.++.||..+.++|+|.+|..++
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344444555555455555555666666555554444   555555555544 2 23445555666666666666666666


Q ss_pred             HHHHhcCCCCHHHHH
Q 008705          429 RKSVFLQPNDSRLWI  443 (557)
Q Consensus       429 ~~a~~~~p~~~~~~~  443 (557)
                      +..++..|++..+..
T Consensus        98 ~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           98 RGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHCTTCHHHHH
T ss_pred             HHHHHhCCCCHHHHH
Confidence            666666665554443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.85  E-value=0.00025  Score=55.15  Aligned_cols=91  Identities=15%  Similarity=0.036  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH---HHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCHHHHHH
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE---AIKCYRRAANCN-D-SEAIALNQLAKLHHALGRDEEAAF  496 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~  496 (557)
                      ..+...|.+....++.+..+.+.+|+++.+  ..+..+   ++.+++..+..+ | ..-+.++.+|..+.+.|+|++|..
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~--S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR--TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTT--SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344455555555555566666666666665  554444   666666666554 3 344566666666666666666666


Q ss_pred             HHHHHHHHHHhhhcCCcchHHHHHH
Q 008705          497 YYKKDLERMEAEEREGPNMVEALIF  521 (557)
Q Consensus       497 ~~~~al~~~~~~~~~~~~~~~~~~~  521 (557)
                      +++.+++       ..|++..+...
T Consensus        96 ~~~~lL~-------~eP~n~QA~~L  113 (126)
T 1nzn_A           96 YVRGLLQ-------TEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHH-------HCTTCHHHHHH
T ss_pred             HHHHHHH-------hCCCCHHHHHH
Confidence            6666666       45655555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.74  E-value=0.034  Score=56.92  Aligned_cols=124  Identities=15%  Similarity=0.002  Sum_probs=73.2

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      ++.......+.+.|...+.+.....+-+..    .+..++.-...  .+...++...+.+......++...- ..+....
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e-~~~r~Al  296 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMAL  296 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH--cCCChHHHHHHHhccccCCChHHHH-HHHHHHH
Confidence            344444455777788777766543333322    22233333333  3435566666666655444433333 3333445


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      +.|+++.|..+|+..-.       .........+++|+.+...|+.++|..+|+++..
T Consensus       297 r~~d~~~a~~~~~~l~~-------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          297 GTGDRRGLNTWLARLPM-------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHTCHHHHHHHHHHSCT-------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHccc-------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            66888888887766443       2234577788888888888888888888888765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.59  E-value=0.00067  Score=55.26  Aligned_cols=97  Identities=11%  Similarity=-0.045  Sum_probs=64.5

Q ss_pred             HHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-----
Q 008705          444 AMAQCYETEQLHMLEEAIKCYRRAANCNDSE---------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE-----  509 (557)
Q Consensus       444 ~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----  509 (557)
                      .-...+..  .|.|+.|+-....++.+..++         ..++..+|.+++..|+|..|...|++++.......     
T Consensus        25 dqik~L~d--~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           25 DHVRDMAA--AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHH--TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHH--hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            33444445  677777777666655543222         23667777777777777777777777766433100     


Q ss_pred             -------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          510 -------------REGPNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       510 -------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                                   ...+.+.++.+.+|.||.+.|++++|+..++.+
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                         012345689999999999999999999998764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.49  E-value=0.027  Score=45.52  Aligned_cols=201  Identities=15%  Similarity=0.099  Sum_probs=111.2

Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHH-hh-CCCCCchhhchhHHHHHHHHhhh
Q 008705           91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIE-LE-GPLGKSNAVNRELISLERELSTS  168 (557)
Q Consensus        91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~l~~~  168 (557)
                      +-..+++-++|-.|+|.||+.+|-+.....+.+....+.+...+.++....++ +. +-+++...+.-+       +..+
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~-------~~~f  106 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR-------IQEM  106 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH-------HHTT
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc-------ccee
Confidence            45788899999999999999999988777777666655544444333222222 11 122222222211       2222


Q ss_pred             hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHH--hhhcHHHHhhcC-CChhHHHHHHHHHH
Q 008705          169 WKNGTVD-PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKS--LCTSIDILNSLN-LNNHWMKDYFLASA  244 (557)
Q Consensus       169 ~~~~~~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~--~~~~~~~~~~l~-~~~~~~~~~~la~~  244 (557)
                      .- +|.| ...+.++|.++.+.|+.+||+..|..+...+|-....-..+-.  .....+.-+-.. ........+.....
T Consensus       107 fv-d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~  185 (242)
T 3kae_A          107 FV-DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSI  185 (242)
T ss_dssp             SC-CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHH
T ss_pred             ee-ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHH
Confidence            22 3555 4567788999999999999999999999999875543211100  000000000000 00111111111111


Q ss_pred             HHHHhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705          245 YQELRMHKESLTKYEYLQGTFSFS-NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR  302 (557)
Q Consensus       245 ~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  302 (557)
                      -...--.+   ...++-...-|.- .......|..++..|-.++...+|..+.+.+|..
T Consensus       186 ~lHe~~s~---~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F  241 (242)
T 3kae_A          186 EFHESLSP---SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF  241 (242)
T ss_dssp             HHHHHCCH---HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred             HHHHhccH---HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence            01100011   2233333344553 3344567788999999999999999999999853

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.16  E-value=0.0068  Score=47.26  Aligned_cols=97  Identities=11%  Similarity=0.053  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHhccCCCC-HHHHHHHHHhhhcHHHHhhcCC
Q 008705          156 RELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNE---NLARTVFVESVNSYPWN-WNAWSELKSLCTSIDILNSLNL  231 (557)
Q Consensus       156 ~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~~~~~~l~~  231 (557)
                      .++..+.+....-. .+...+.+.|.+|.++.+..+.   .+++.+++..++.+|.. -+++                  
T Consensus        21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~L------------------   81 (134)
T 3o48_A           21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECL------------------   81 (134)
T ss_dssp             HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH------------------
T ss_pred             HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHH------------------
Confidence            45666666665533 4556788999999999888765   46888999888877743 3333                  


Q ss_pred             ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKA  278 (557)
Q Consensus       232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  278 (557)
                             |++|..+.+.|+|++|.++.+.+++..|++..+......+
T Consensus        82 -------YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           82 -------YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             -------HHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence                   5568899999999999999999999999988766554433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.00  E-value=0.0089  Score=46.60  Aligned_cols=75  Identities=7%  Similarity=-0.030  Sum_probs=44.1

Q ss_pred             CHHHHHHHhHHHHhcCCc---hHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705          370 YLSAWTLMGHEYVEMKNT---PAAIDAYRRAVDINPR-DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA  444 (557)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  444 (557)
                      .+.+.+.+|+++....+.   ..++..++..+..+|. .-+.++.||..+.++|+|++|..+.+.+++..|++..+...
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            345555666666655543   3466666666665552 35556666666666666666666666666666666554433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.92  E-value=0.026  Score=44.58  Aligned_cols=75  Identities=7%  Similarity=-0.026  Sum_probs=44.8

Q ss_pred             CCHHHHHHHhHHHHhcCCc---hHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 008705          369 NYLSAWTLMGHEYVEMKNT---PAAIDAYRRAVDINPR-DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI  443 (557)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  443 (557)
                      -...+.+.+|+++....+.   .+++..++..+...|. .-+.++.||..+.++|+|.+|..+.+..++..|++..+..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3455566666666665543   3466666666665553 3445566666666666666666666666666666655443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.85  E-value=0.025  Score=54.07  Aligned_cols=99  Identities=14%  Similarity=0.003  Sum_probs=75.0

Q ss_pred             HHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-h
Q 008705          443 IAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-M  515 (557)
Q Consensus       443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~  515 (557)
                      ..+|..|..  .|+|.+|.+.+.+....    +..  -.+++..-..+|...|++.++...+.++...... ...+|. .
T Consensus       103 ~kL~~l~~~--~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i~  179 (394)
T 3txn_A          103 ARLIALYFD--TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHH
T ss_pred             HHHHHHHHH--hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHHH
Confidence            378899999  99999998888887763    111  1457778888999999999999999999874322 212332 3


Q ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Q 008705          516 VEALIFLATHCR-AHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       516 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~  544 (557)
                      +.....-|.++. ..++|.+|..+|-.++.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            455666788889 89999999999988863

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.82  E-value=0.046  Score=43.22  Aligned_cols=76  Identities=13%  Similarity=-0.035  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHhHHhcCcH---HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705          437 NDSRLWIAMAQCYETEQLHML---EEAIKCYRRAANCND-SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG  512 (557)
Q Consensus       437 ~~~~~~~~l~~~~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (557)
                      ..+.+.+++|+++.+  ..+.   .+++.+++..+...| ..-+.++.+|..+.++|+|++|..+.+.+++       ..
T Consensus        37 vs~~t~F~YAw~Lv~--S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~-------~e  107 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIK--STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE-------HE  107 (144)
T ss_dssp             SCHHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------TC
T ss_pred             CcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cC
Confidence            345566666666665  4432   356666666666555 3345666666666666666666666666666       56


Q ss_pred             cchHHHHHH
Q 008705          513 PNMVEALIF  521 (557)
Q Consensus       513 ~~~~~~~~~  521 (557)
                      |++..+...
T Consensus       108 P~n~QA~~L  116 (144)
T 1y8m_A          108 RNNKQVGAL  116 (144)
T ss_dssp             CCCHHHHHH
T ss_pred             CCcHHHHHH
Confidence            666555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.62  E-value=0.76  Score=46.96  Aligned_cols=184  Identities=5%  Similarity=-0.158  Sum_probs=103.1

Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHH-H---HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLS-A---WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL  422 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~-~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  422 (557)
                      .....+.+.|...+.+.....+-+.. .   +..++.-....+...++...+.+......++.. .-.++......|++.
T Consensus       224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~  302 (618)
T 1qsa_A          224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRR  302 (618)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHH
T ss_pred             HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHH
Confidence            33445666777766655432222211 1   122222222333344555666655443332222 222222334557777


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-----------------------CCh-----
Q 008705          423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----------------------DSE-----  474 (557)
Q Consensus       423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~-----  474 (557)
                      .|..+|.++-......+...+.+|..+..  .|+.++|...|+++....                       +..     
T Consensus       303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~--~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~  380 (618)
T 1qsa_A          303 GLNTWLARLPMEAKEKDEWRYWQADLLLE--RGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT  380 (618)
T ss_dssp             HHHHHHHHSCTTGGGSHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred             HHHHHHHHccccccccHhHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence            77777766544333456666777777777  777777777777665421                       000     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL  542 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  542 (557)
                      .......+..+...|....|...+...+.       ..  ++.-...++.+....|.+..++....+.
T Consensus       381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~-------~~--~~~~~~~la~~a~~~~~~~~~v~~~~~~  439 (618)
T 1qsa_A          381 QGPEMARVRELMYWNLDNTARSEWANLVK-------SK--SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (618)
T ss_dssp             HSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHCCChhhHHHHHHHHHh-------cC--CHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            01234566778889999999888887765       21  2344557788888899998887666543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.58  E-value=0.14  Score=49.03  Aligned_cols=163  Identities=7%  Similarity=-0.080  Sum_probs=78.8

Q ss_pred             cHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHH-----HHHHHHHhh-hCchHHHHHHHHHHHhcCcCCH----H--
Q 008705          305 DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESC-----CIIGNYYSL-KGQHEKSVVYFRRALKLDKNYL----S--  372 (557)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~----~--  372 (557)
                      +...++.++...++.+++..+.......-+.-+.+.     ..+-..+.. .+..+.-+..+..+++...+.-    .  
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666555433332222221     122222222 2223333344444443222111    1  


Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCC--C----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcC---CCCHH---
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPR--D----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ---PNDSR---  440 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~---  440 (557)
                      .-..+|..|+..|+|.+|.+.+.+..+.-..  +    .+++..-.++|..++++.++...+.++....   +.+|.   
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            1225666666666666666666665552111  1    3344455556666666666666666664432   12222   


Q ss_pred             -HHHHHHHHHh-HHhcCcHHHHHHHHHHHHh
Q 008705          441 -LWIAMAQCYE-TEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       441 -~~~~l~~~~~-~~~~~~~~~A~~~~~~al~  469 (557)
                       ....-|..+. .  .++|.+|...|-.++.
T Consensus       181 ~i~~~~Gi~~l~~--~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          181 ALDLQSGILHAAD--ERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHT--TSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHh--ccCHHHHHHHHHHHHh
Confidence             2334455555 5  6666666666666653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.053  Score=56.46  Aligned_cols=56  Identities=11%  Similarity=0.160  Sum_probs=34.8

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS  431 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  431 (557)
                      .-+..+...|+++-|+++-++++...|.+...|+.|+.+|..+|+|+.|+-.++-+
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33444555666666666666666666666666666666666666666666555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.36  E-value=0.74  Score=49.00  Aligned_cols=43  Identities=12%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhc
Q 008705           92 DFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGE  134 (557)
Q Consensus        92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~  134 (557)
                      +.+...+|.+..++.+.+..+|.++.+.....+.+...|..++
T Consensus       232 dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~  274 (963)
T 4ady_A          232 DYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVS  274 (963)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence            5666789999999999999999997654444445545555553

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.29  E-value=0.34  Score=39.24  Aligned_cols=99  Identities=13%  Similarity=0.054  Sum_probs=75.5

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705          173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK  252 (557)
Q Consensus       173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~  252 (557)
                      |..++.-.+++.+++-.|.|..|+-.+.+.                              +...+.++.+.||....+|.
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l------------------------------NT~Ts~YYk~LCy~klKdYk   79 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKL------------------------------NTCTSKYYESLCYKKKKDYK   79 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHTC------------------------------CBHHHHHHHHHHHHHTTCHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHhc------------------------------chHHHHHHHHHHHHHHHHHH
Confidence            555678888999999999999887766432                              11233466788999999999


Q ss_pred             HHHHHHHHHHh--c--C-------------CCCH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705          253 ESLTKYEYLQG--T--F-------------SFSN-YIQAQIAKAQYSLREFEQVEVIFEELLRNDPY  301 (557)
Q Consensus       253 ~A~~~~~~~l~--~--~-------------p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  301 (557)
                      .|+..++++++  .  +             |.+. ..+..+|.++.+.|+.++|+.+|......+|-
T Consensus        80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            99999999983  2  2             2333 35678899999999999999999999998874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.25  E-value=0.15  Score=54.62  Aligned_cols=160  Identities=16%  Similarity=0.055  Sum_probs=82.2

Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705          341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM  420 (557)
Q Consensus       341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  420 (557)
                      ..+..++...|.++.|+...+        ++...   .......|++++|.+..+.     .++...|..+|..+...++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence            445555566666666654432        11111   2344567777777776432     3467778888888888888


Q ss_pred             hHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH
Q 008705          421 PLYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE  492 (557)
Q Consensus       421 ~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  492 (557)
                      ++.|+.+|.++-..        ...+...+..++.....  .|++..|..+|.+.-     +   ......+|...++++
T Consensus       697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~--~~~~~~A~~~~~~~g-----~---~~~a~~~~~~~~~~~  766 (814)
T 3mkq_A          697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET--TGKFNLAFNAYWIAG-----D---IQGAKDLLIKSQRFS  766 (814)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHT-----C---HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH--cCchHHHHHHHHHcC-----C---HHHHHHHHHHcCChH
Confidence            88888888775221        12333334444444444  444444444433320     0   112223344444444


Q ss_pred             HHHHHHHHHHHHHHhhhcCCcc--hHHHHHHHHHHHHHcCCHHHH
Q 008705          493 EAAFYYKKDLERMEAEEREGPN--MVEALIFLATHCRAHGRFEEA  535 (557)
Q Consensus       493 ~A~~~~~~al~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A  535 (557)
                      +|...-++.         ..+.  .+.+....+..+...|+.+.|
T Consensus       767 ~A~~lA~~~---------~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          767 EAAFLGSTY---------GLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             HHHHHHHHT---------TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHh---------CCChHHHHHHHHHHHHHHHhccchhHH
Confidence            444433220         1233  345556666666677765433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.18  Score=41.80  Aligned_cols=101  Identities=10%  Similarity=0.051  Sum_probs=72.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705          244 AYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS  323 (557)
Q Consensus       244 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  323 (557)
                      ...+.|+++.|.+..+.+     ++...|..+|......|+++-|+.+|.++-        .+..+.-++...|+.+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHHHH
Confidence            456889999999998876     678899999999999999999999999872        3445555666677777766


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHH
Q 008705          324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR  362 (557)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  362 (557)
                      .+.+.+......     .....++...|+++++++.|.+
T Consensus        81 kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           81 KMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence            665554433321     2233445556777777766654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.11  E-value=0.11  Score=55.66  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             HhcccHHHHHH-HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHH
Q 008705          280 YSLREFEQVEV-IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVV  358 (557)
Q Consensus       280 ~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  358 (557)
                      ...+++++|.. ++.    .-|+ ..........+...+..+.+..+.+        ++...   .......|+++.|.+
T Consensus       610 ~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~  673 (814)
T 3mkq_A          610 TLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARD  673 (814)
T ss_dssp             HHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHH
Confidence            45677777754 321    1120 1222444555555666666554431        22222   334566788888887


Q ss_pred             HHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705          359 YFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       359 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                      ..+     ..++...|..+|..+.+.++++.|+++|.++
T Consensus       674 ~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          674 LLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            754     2356788999999999999999999999876

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.075  Score=55.35  Aligned_cols=116  Identities=15%  Similarity=0.072  Sum_probs=82.9

Q ss_pred             hhCc-hHHHHHHHHHHHhcCcCCHHHHHHHhHHHH--hcC-CchHHHHHHHHHHhh--------CCCC----------hH
Q 008705          349 LKGQ-HEKSVVYFRRALKLDKNYLSAWTLMGHEYV--EMK-NTPAAIDAYRRAVDI--------NPRD----------YR  406 (557)
Q Consensus       349 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~-~~~~A~~~~~~al~~--------~p~~----------~~  406 (557)
                      ..++ ++.|+.++++....+|.... .+..+.+..  ..+ +--+|+..+.++++.        .+.+          ..
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3445 57799999998888886533 222222222  122 233566666666531        2222          22


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      .+..-+..+...|+++-|+.+.++++...|.+...|..|+.+|..  +|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~--l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK--KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH--TTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH--hccHHHHHHHHhcC
Confidence            444556677789999999999999999999999999999999999  99999999887765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=1.6  Score=42.83  Aligned_cols=190  Identities=8%  Similarity=-0.071  Sum_probs=113.6

Q ss_pred             CchHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH---HH-HhCC
Q 008705          351 GQHEKSVVYFRRALKL------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA---YE-MMHM  420 (557)
Q Consensus       351 g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~---~~-~~~~  420 (557)
                      |+++.|++.+...-+.      .+....+...+..++...|+++...+.+.-..........+-..+...   +. ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            5666666655333221      122345566667777777777776665544433322222222111111   11 1122


Q ss_pred             hHHHHHHHHHHHhc----CCC-------CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC--hHHHHHHHHH
Q 008705          421 PLYALHYFRKSVFL----QPN-------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALNQLAK  483 (557)
Q Consensus       421 ~~~A~~~~~~a~~~----~p~-------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~  483 (557)
                      .+...  ....+..    ...       ..+....++.++..  .|++.+|...+.....-    .+.  -.+++.....
T Consensus       110 ~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~--~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r  185 (445)
T 4b4t_P          110 LDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKE--EGKIDEAADILCELQVETYGSMEMSEKIQFILEQME  185 (445)
T ss_dssp             THHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred             hhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            22111  1111211    111       24566789999999  99999999999887532    111  1457888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          484 LHHALGRDEEAAFYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      ++...+++.+|...++++........ ..| -....+...|.++...++|.+|..+|..++..
T Consensus       186 l~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          186 LSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            99999999999999999765332211 112 23456677899999999999999999998764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.67  E-value=0.2  Score=48.27  Aligned_cols=123  Identities=11%  Similarity=-0.094  Sum_probs=86.4

Q ss_pred             hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH-HHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc
Q 008705          378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA-LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM  456 (557)
Q Consensus       378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A-~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  456 (557)
                      |......|+.+.|...+++++.+....+-.-  ..     ...+-.+ ...+++..      ..+...++..+..  .|+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~--~g~  186 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIA--CGR  186 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHH--TTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHH--CCC
Confidence            3444456888888888888888764432110  00     0111111 11121111      2345567778888  999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705          457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM  515 (557)
Q Consensus       457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (557)
                      +.+|+..+.+++..+|-+..++..+..++...|+..+|+..|+++.+.+..+-+..|..
T Consensus       187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~  245 (388)
T 2ff4_A          187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  245 (388)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            99999999999999999999999999999999999999999999988777666666643

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.66  E-value=0.14  Score=54.73  Aligned_cols=98  Identities=5%  Similarity=-0.038  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFL----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALN  479 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  479 (557)
                      ...+..+...|.+.|+.++|...|....+.    ..-+...|+.+...|.+  .|+.++|.++|++..... ..+...|.
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck--~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR--QGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            456888999999999999999999876532    24468899999999999  999999999999998753 23567788


Q ss_pred             HHHHHHHHcCCH-HHHHHHHHHHHHH
Q 008705          480 QLAKLHHALGRD-EEAAFYYKKDLER  504 (557)
Q Consensus       480 ~la~~~~~~g~~-~~A~~~~~~al~~  504 (557)
                      .+-.++.+.|+. ++|..+|++..+.
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            888899999985 7888999998873

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.52  E-value=0.28  Score=43.55  Aligned_cols=112  Identities=13%  Similarity=0.006  Sum_probs=78.7

Q ss_pred             chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhh---cHHHH-h---
Q 008705          155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCT---SIDIL-N---  227 (557)
Q Consensus       155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~---~~~~~-~---  227 (557)
                      ...+..+...+...++.+|.|+.....+...++-.|+++.|.+-++.+.+++|.....-..+..++.   ....+ .   
T Consensus        10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~   89 (273)
T 1zbp_A           10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA   89 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4567778888888888999999999999999999999999999999999999987654433322221   11111 1   


Q ss_pred             ---hcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705          228 ---SLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS  266 (557)
Q Consensus       228 ---~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  266 (557)
                         -+..+..|......+......|+.++|...-.++++.-|
T Consensus        90 ~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap  131 (273)
T 1zbp_A           90 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  131 (273)
T ss_dssp             CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence               123455566666666666666666666666666655544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.61  Score=38.66  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=20.0

Q ss_pred             hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR  396 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  396 (557)
                      ..|+++.|.+..+..     ++...|..+|...+..|+++-|.++|.+
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            344555554444332     2344455555555555555555544444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.23  E-value=2.2  Score=41.70  Aligned_cols=187  Identities=9%  Similarity=-0.008  Sum_probs=111.4

Q ss_pred             HhhhHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH----Hhcc
Q 008705          248 LRMHKESLTKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL----YAKE  317 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~----~~~~  317 (557)
                      .|++++|++.+..+.+.      .+....+...+..++...|+++...+.+.-+.+.......+...+.+..    ....
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            47788888777554432      2335777888889999999999887777655443332222221111111    1111


Q ss_pred             chh--HHHHHHHHHHhhCCC-------ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc------CCHHHHHHHhHHHH
Q 008705          318 CFS--ALSYLAHRVFMTDKY-------RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK------NYLSAWTLMGHEYV  382 (557)
Q Consensus       318 ~~~--~~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~  382 (557)
                      ..+  .-..+..........       +......++.+|...|++.+|...+.....-.-      .-.+.+.....++.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            111  111111111111111       334456788888888999999888887653211      11356677788888


Q ss_pred             hcCCchHHHHHHHHHHh---hCCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705          383 EMKNTPAAIDAYRRAVD---INPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFL  434 (557)
Q Consensus       383 ~~~~~~~A~~~~~~al~---~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  434 (557)
                      ..+++..|...++++..   ..+..    ...+...|.++...++|.+|-.+|..++..
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            88888888888887642   22223    234566788888888888888888887653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.72  E-value=0.43  Score=51.03  Aligned_cols=100  Identities=7%  Similarity=-0.081  Sum_probs=83.7

Q ss_pred             CHHHHHHHhHHHHhcCCchHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHH
Q 008705          370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI----NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIA  444 (557)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~  444 (557)
                      ....+..+...|.+.|+.++|...|....+.    ..-+..+|..+...|.+.|+.++|...|+++.+.. .-|...|..
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            3456888999999999999999999775432    23378899999999999999999999999998754 346788999


Q ss_pred             HHHHHhHHhcCc-HHHHHHHHHHHHhcC
Q 008705          445 MAQCYETEQLHM-LEEAIKCYRRAANCN  471 (557)
Q Consensus       445 l~~~~~~~~~~~-~~~A~~~~~~al~~~  471 (557)
                      +-.++.+  .|+ .++|.++|++.....
T Consensus       206 LI~glcK--~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          206 ALQCMGR--QDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHH--HTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHh--CCCcHHHHHHHHHHHHHcC
Confidence            9999999  898 578999999998764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.70  E-value=0.42  Score=45.96  Aligned_cols=112  Identities=15%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHH-HHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA-IDAYRRAVDINPRDYRAWYGLGQAYEMMHMP  421 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  421 (557)
                      .|......|+.+.|...+.+|+.+.....-.  ...     ...+-.+ ...++..      ...+...++..+...|++
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~  187 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRA  187 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCH
Confidence            3444445689999999999999886432110  000     0111111 1111111      123445577788888999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN  469 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~  469 (557)
                      .+|+..+..++..+|-+-.++..+-.++..  .|+..+|+..|+++-.
T Consensus       188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~--~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          188 SAVIAELEALTFEHPYREPLWTQLITAYYL--SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Confidence            999999999999999888888888888888  8999999988887644

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.70  E-value=0.2  Score=49.64  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      .+..+|++......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4566888888888888999999999999999999999999999989998889999899888776678888888877654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.58  E-value=0.75  Score=40.85  Aligned_cols=115  Identities=12%  Similarity=-0.041  Sum_probs=71.5

Q ss_pred             HHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705          380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE  459 (557)
Q Consensus       380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  459 (557)
                      ..++.|+.++|+......++.+|.|......+.+.+...|+++.|...++.+.+++|.....-..+..+..         
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~---------   76 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK---------   76 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH---------
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH---------
Confidence            34567778888888888888888888888888888888888888888888888888776443222211111         


Q ss_pred             HHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          460 AIKCYRRAANC--------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       460 A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      |...=.+++.-        .|........-+......|+.++|...-.++.+
T Consensus        77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e  128 (273)
T 1zbp_A           77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  128 (273)
T ss_dssp             HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence            11111112211        122222333445555667888888888877776

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.52  E-value=0.19  Score=49.73  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..+..+|.+......+..|..+|.+|..+.|++...++.||.+....|+.-+|+.+|-+++......+.+..++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999887789999999888765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.30  E-value=1.2  Score=49.56  Aligned_cols=145  Identities=10%  Similarity=-0.039  Sum_probs=98.5

Q ss_pred             HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--------------------
Q 008705          342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN--------------------  401 (557)
Q Consensus       342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------------  401 (557)
                      .+...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|+++-.--                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34555666677765544    234456667777889999999999999999998763210                    


Q ss_pred             ---CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705          402 ---PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP-NDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS  473 (557)
Q Consensus       402 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~  473 (557)
                         ...+..|..+..++...+.++.++...+.|++..+ ++.    ..|..+-..+..  .|+|++|...+...-.. ..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~--l~~ye~Ay~aL~~~pd~-~~  969 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA--AGKFDAAHVALMVLSTT-PL  969 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH--HCCSGGGGHHHHHHHHS-SS
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh--hCCHHHHHHHHHhCCCH-HH
Confidence               11134566778888999999999999999998754 333    267777788888  99999998877654322 12


Q ss_pred             hHHHHHHHHHHHHHcCCHHH
Q 008705          474 EAIALNQLAKLHHALGRDEE  493 (557)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~  493 (557)
                      ....+..+...+...|..+.
T Consensus       970 r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHhCCChhh
Confidence            24455555555555555443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.99  E-value=0.2  Score=49.00  Aligned_cols=97  Identities=14%  Similarity=0.001  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC--CChH----
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN--DSEA----  475 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~----  475 (557)
                      ..++..+|..|...|+++.|.+.|.++......   -..++.....++..  .+++..+...+.++....  ..++    
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~--~~d~~~~~~~~~ka~~~~~~~~d~~~~~  208 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF--YNDQLYVKEKLEAVNSMIEKGGDWERRN  208 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence            446677888888888888888888877654322   24566677777777  788888888887775441  1122    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705          476 IALNQLAKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (557)
                      ......|.++...++|.+|...|-.+..
T Consensus       209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          209 RYKTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            2344456666777788888777776654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.83  E-value=8.2  Score=41.20  Aligned_cols=185  Identities=12%  Similarity=0.032  Sum_probs=99.3

Q ss_pred             hhCchHHHHHHHHHHHhcC-cCC----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC---C---C----hHHHHHHHH
Q 008705          349 LKGQHEKSVVYFRRALKLD-KNY----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP---R---D----YRAWYGLGQ  413 (557)
Q Consensus       349 ~~g~~~~A~~~~~~al~~~-p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~---~----~~~~~~l~~  413 (557)
                      ..|+.++++..+.+-+... .++    ..+.+.+|.++...+  .+++..+...+..+.   .   +    ..+-.+||.
T Consensus       386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4566667777766655421 111    233445555544444  467777777665432   0   1    134456666


Q ss_pred             HHHHhCChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705          414 AYEMMHMPLYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD  491 (557)
Q Consensus       414 ~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  491 (557)
                      ++...++ +++...+...+..+....  .+-..+|.++..  .|+-+-...++..+.+...+...-...+|..+...|+.
T Consensus       464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vG--Tgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLG--TGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred             HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc--cCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence            6665554 456666766665332211  234566777776  77766555555555543333222223344444566777


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          492 EEAAFYYKKDLERMEAEEREGPN-MVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      +.+....+.....      .+|. ...+-+.+|..|...|+...-...+..+..
T Consensus       541 e~~~~li~~L~~~------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~  588 (963)
T 4ady_A          541 ELADDLITKMLAS------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS  588 (963)
T ss_dssp             GGGHHHHHHHHHC------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence            7666665554440      1111 122234467777888987666667777765

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.65  E-value=1.8e-05  Score=75.69  Aligned_cols=268  Identities=13%  Similarity=0.088  Sum_probs=166.8

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705          172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH  251 (557)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~  251 (557)
                      .-+.|.+|..+|.++...|...+||+.|-++  .+|.+..-.                            ..+..+.|.+
T Consensus        50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eV----------------------------i~~A~~~~~~   99 (624)
T 3lvg_A           50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEV----------------------------VQAANTSGNW   99 (624)
T ss_dssp             SCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHH----------------------------HHHTTTSSCC
T ss_pred             HhCCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHH----------------------------HHHHHhCCCH
Confidence            3567899999999999999999999999886  456554322                            3444566778


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705          252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM  331 (557)
Q Consensus       252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (557)
                      ++-+.+++.+.+. -..+.+-..+..+|.+.++..+-.+.+     ..| +.......|.-++..+.++.+..++..   
T Consensus       100 edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl-----~~~-N~A~iq~VGDrcf~e~lYeAAKilys~---  169 (624)
T 3lvg_A          100 EELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI-----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNN---  169 (624)
T ss_dssp             TTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT-----SCC-SSSCTHHHHHHHHHSCCSTTSSTTGGG---
T ss_pred             HHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH-----cCC-CcccHHHHHHHHHHccCHHHHHHHHHh---
Confidence            8777777766543 334445556666777776654322221     123 233345556666666666655433322   


Q ss_pred             hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705          332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL  411 (557)
Q Consensus       332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  411 (557)
                           ..-|..++.++...|++..|++.-++|     +++.+|-.........+++.-|-.+--..+- .++.   +-.+
T Consensus       170 -----isN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~el  235 (624)
T 3lvg_A          170 -----VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEEL  235 (624)
T ss_dssp             -----SCCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGG
T ss_pred             -----CccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHH
Confidence                 222334677777888888887766554     4556777777777788877777655544442 2322   2235


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh-c-CCC------hHHHHHHHHH
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-C-NDS------EAIALNQLAK  483 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~-~-~p~------~~~~~~~la~  483 (557)
                      ...|...|-|++-+..++.++.+..-...++..||.+|.+   -++++-.+.++.-.. + -|.      ....|..+..
T Consensus       236 v~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK---Y~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf  312 (624)
T 3lvg_A          236 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK---FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF  312 (624)
T ss_dssp             GSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS---SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence            5667778888888888888887777777788888887765   344444444432111 0 121      1235666777


Q ss_pred             HHHHcCCHHHHHH
Q 008705          484 LHHALGRDEEAAF  496 (557)
Q Consensus       484 ~~~~~g~~~~A~~  496 (557)
                      +|..-.+++.|..
T Consensus       313 LY~~ydE~DnA~l  325 (624)
T 3lvg_A          313 LYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHTCHHHHHH
T ss_pred             HHhcchhHHHHHH
Confidence            7777777776653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.41  E-value=2.4  Score=41.75  Aligned_cols=126  Identities=10%  Similarity=0.018  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC-------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh-----
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY-------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY-----  405 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----  405 (557)
                      ..+..+-+.|...+.++.|..+..++.  .|..       ..-++.+|.++...++|.+|.+++..|+...|.+.     
T Consensus       232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf  309 (523)
T 4b4t_S          232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF  309 (523)
T ss_dssp             HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence            355567777888888999998888874  3321       23356788999999999999999999988777542     


Q ss_pred             --HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          406 --RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       406 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                        .++..+..+-..+|+..+- ..|.     .+..   -..|..++.++..+....+..++.-++..+..+
T Consensus       310 r~~a~K~lI~V~LLlG~iP~r-~lf~-----q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~D  374 (523)
T 4b4t_S          310 LQQSNKLHCCIQLLMGDIPEL-SFFH-----QSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKD  374 (523)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCH-HHHT-----TTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHhHHhhcCCCCCh-HHhh-----chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccC
Confidence              1222333333445665431 1111     1222   123556666665422333444554444444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.20  E-value=0.51  Score=46.13  Aligned_cols=59  Identities=8%  Similarity=0.115  Sum_probs=27.0

Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHhcCc---CCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705          339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDK---NYLSAWTLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                      ++..+|.+|...|++++|.+.|.++.....   .-.+.+.....++...+++..+...+.++
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            444455555555555555555555443221   12233444444444444444444444444

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.18  E-value=0.12  Score=50.71  Aligned_cols=74  Identities=12%  Similarity=0.070  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705          475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS  550 (557)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  550 (557)
                      ..++..+-+.|...+.+++|..+..++.-  +.....+......++.+|.++.-+++|.+|.+++..|+...|++.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            45677788888888888888888887642  111011223356677789999999999999999999988776653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.59  E-value=3  Score=46.47  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=89.8

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC--------------------
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ--------------------  435 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------  435 (557)
                      .+...+...+.++-+.+    .+...|.++..-+.+|.++...|++++|..+|+++..--                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            44555667788876654    344567777778999999999999999999999874211                    


Q ss_pred             ---CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh-H----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705          436 ---PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-A----IALNQLAKLHHALGRDEEAAFYYKKD  501 (557)
Q Consensus       436 ---p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~~~~a  501 (557)
                         ...+..|..+..++..  .+.++.++++.+.|++..+.+ .    ..|.++-..+...|+|++|...+...
T Consensus       893 ~~~~~l~~YY~hv~~LFe~--~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFE--ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence               1123456677788888  999999999999999865432 2    26777888899999999998777543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.22  E-value=15  Score=28.80  Aligned_cols=57  Identities=12%  Similarity=0.071  Sum_probs=33.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705          484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  547 (557)
                      .+..+|+-++-.+.+...+.       ..+-.+..+..+|..|.+.|+..+|.+.+.+|.+..-
T Consensus       100 ~lv~~~KkDqLdki~~~~l~-------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILK-------NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC---------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccHhHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34555666655555555433       3445566667777777777777777777776666543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=82.73  E-value=0.018  Score=55.66  Aligned_cols=252  Identities=17%  Similarity=0.145  Sum_probs=139.7

Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCC---CchhhchhHHHHHHHHhhhhc
Q 008705           94 YLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLG---KSNAVNRELISLERELSTSWK  170 (557)
Q Consensus        94 ~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~l~~~~~  170 (557)
                      ..||+++.+.+...+|+..|-++.++....--.   -.+...+++++.+..+....   +...+..++.-+...+.++..
T Consensus        58 s~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi---~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~e  134 (624)
T 3lvg_A           58 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVV---QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE  134 (624)
T ss_dssp             SSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHH---HHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSST
T ss_pred             HHHHHHHHccCchHHHHHHHHhCCChHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHH
Confidence            347888888888888887776665543221000   01112223333332221111   111222222222222221111


Q ss_pred             -----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHH
Q 008705          171 -----NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAY  245 (557)
Q Consensus       171 -----~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~  245 (557)
                           .+|+.+ -.-..|.-++..|.|+.|.-+|..+-.     +   ..                         ++.++
T Consensus       135 lEefl~~~N~A-~iq~VGDrcf~e~lYeAAKilys~isN-----~---ak-------------------------LAstL  180 (624)
T 3lvg_A          135 LEEFINGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNVSN-----F---GR-------------------------LASTL  180 (624)
T ss_dssp             TTSTTSCCSSS-CTHHHHHHHHHSCCSTTSSTTGGGSCC-----C---TT-------------------------TSSSS
T ss_pred             HHHHHcCCCcc-cHHHHHHHHHHccCHHHHHHHHHhCcc-----H---HH-------------------------HHHHH
Confidence                 123322 234567777777777777666654321     1   11                         26667


Q ss_pred             HHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHH
Q 008705          246 QELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL  325 (557)
Q Consensus       246 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  325 (557)
                      ..+|+|..|++.-+++     +++..|-....++...+++.-|.-+--.++- .|+..+                     
T Consensus       181 V~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~---------------------  233 (624)
T 3lvg_A          181 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELE---------------------  233 (624)
T ss_dssp             SSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCS---------------------
T ss_pred             HHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHH---------------------
Confidence            7777777777766555     3445566677777777777766655555443 222211                     


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh-hC-CC
Q 008705          326 AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD-IN-PR  403 (557)
Q Consensus       326 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-p~  403 (557)
                                      .+...|...|-+++-+..++.++.+...+....+.+|.+|.+- ++++-.++++--.. ++ |+
T Consensus       234 ----------------elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipK  296 (624)
T 3lvg_A          234 ----------------ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK  296 (624)
T ss_dssp             ----------------GGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTT
T ss_pred             ----------------HHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHH
Confidence                            2556677788888888888888888888888888888877654 45666655543211 11 21


Q ss_pred             ------ChHHHHHHHHHHHHhCChHHHHH
Q 008705          404 ------DYRAWYGLGQAYEMMHMPLYALH  426 (557)
Q Consensus       404 ------~~~~~~~l~~~~~~~~~~~~A~~  426 (557)
                            ....|..+.-+|..-.+|+.|..
T Consensus       297 viracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          297 VLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             THHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence                  24557788888888888887653

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=81.16  E-value=18  Score=33.07  Aligned_cols=114  Identities=10%  Similarity=-0.051  Sum_probs=63.3

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCChHHHHHHHHHHH
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEAIALNQLAKLH  485 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~  485 (557)
                      +..=|.+.+++++|++.+.....              .+.+  .|++..|.....-.++.     .+-+......+..++
T Consensus        39 l~~Ry~~~~~~~eAidlL~~ga~--------------~ll~--~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~  102 (312)
T 2wpv_A           39 IANRYVRSKSYEHAIELISQGAL--------------SFLK--AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI  102 (312)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--------------HHHH--TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHH--------------HHHH--CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            34445667778888777655432              2223  33333333321111111     122233444444444


Q ss_pred             HHcCCHH-HHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705          486 HALGRDE-EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT  540 (557)
Q Consensus       486 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  540 (557)
                      ......+ .=..+.+++++-..+.+...-.++..+..+|..+.+.|++.+|..+|-
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            4332111 124566667764433333355789999999999999999999999885

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.95  E-value=35  Score=31.52  Aligned_cols=135  Identities=16%  Similarity=0.128  Sum_probs=73.7

Q ss_pred             CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705          334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ  413 (557)
Q Consensus       334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  413 (557)
                      -.+|+.+..+|..|...+++.+|..+|-  +. +.+.+..+..+-..+...+.               |.....+...+.
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaV  194 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAV  194 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHH
Confidence            3588899999999999999999888873  21 11122333333222222222               233333333333


Q ss_pred             -HHHHhCChHHHHHHHHHHHh----cC------------------CCCHHH-HHHHHHHHhHHhcCc---HHHHHHHHHH
Q 008705          414 -AYEMMHMPLYALHYFRKSVF----LQ------------------PNDSRL-WIAMAQCYETEQLHM---LEEAIKCYRR  466 (557)
Q Consensus       414 -~~~~~~~~~~A~~~~~~a~~----~~------------------p~~~~~-~~~l~~~~~~~~~~~---~~~A~~~~~~  466 (557)
                       .|...++...|...+....+    .+                  |..|.. +..+...-+.  .+.   +..-.+.|+.
T Consensus       195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q--~~~~~lF~~L~~~Y~~  272 (336)
T 3lpz_A          195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQ--KGSPDLFRQLKSKYEA  272 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHH--SCCHHHHHHHHHHTHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence             46677888888776554432    12                  223321 1122222233  443   3444555666


Q ss_pred             HHhcCC-ChHHHHHHHHHHHHHc
Q 008705          467 AANCND-SEAIALNQLAKLHHAL  488 (557)
Q Consensus       467 al~~~p-~~~~~~~~la~~~~~~  488 (557)
                      .++.+| .....+..+|.+|+..
T Consensus       273 ~l~rd~~~~~~~L~~IG~~YFgi  295 (336)
T 3lpz_A          273 NLNELNGIWDTALELIAEMYFGI  295 (336)
T ss_dssp             HHHTTTTTTHHHHHHHHHHHHCC
T ss_pred             HHHhcHHHHHHHHHHHHHHHcCC
Confidence            666666 6667777888888755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	557
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-25
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-20
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-17
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-12
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-13
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-08
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-10
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	7e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-09
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-08
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-08
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	6e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-05
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	7e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-25
 Identities = 73/376 (19%), Positives = 137/376 (36%), Gaps = 18/376 (4%)

Query: 178 GLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSI--------DILNSL 229
           G           G+   A    ++     P N      L S+                ++
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 230 NLNNHWMKDYF-LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQV 288
             N    + Y  L + Y+E    +E++  Y +              +A A  +  + E  
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 289 EVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS 348
              +   L+ +P          N+L A            +   T      +   +G  ++
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW 408
            +G+   ++ +F +A+ LD N+L A+  +G+   E +    A+ AY RA+ ++P      
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240

Query: 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468
             L   Y    +   A+  +R+++ LQP+    +  +A     ++   + EA  CY  A 
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL--KEKGSVAEAEDCYNTAL 298

Query: 469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 528
               + A +LN LA +    G  EEA   Y+K LE         P    A   LA+  + 
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQ 351

Query: 529 HGRFEEAEVYCTRLLD 544
            G+ +EA ++    + 
Sbjct: 352 QGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (226), Expect = 1e-20
 Identities = 43/284 (15%), Positives = 90/284 (31%), Gaps = 2/284 (0%)

Query: 206 YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTF 265
                   +          +       + +     L +  + L   +E+   Y     T 
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165

Query: 266 SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL 325
                  + +     +  E       FE+ +  DP  +D      NVL     F      
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 326 AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK 385
             R              +   Y  +G  + ++  +RRA++L  ++  A+  + +   E  
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

Query: 386 NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM 445
           +   A D Y  A+ + P    +   L            A+  +RK++ + P  +     +
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

Query: 446 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489
           A     +Q   L+EA+  Y+ A   + + A A + +      + 
Sbjct: 346 ASVL--QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 9/216 (4%)

Query: 180 YLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILN--------SLNL 231
              G V   +G   LA   F ++V   P   +A+  L ++     I +        +L+L
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 232 NNHWMKDYF-LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEV 290
           + +    +  LA  Y E  +   ++  Y                +A A        + E 
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

Query: 291 IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK 350
            +   LR  P   D ++  +N+   +        L  +          +   + +    +
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352

Query: 351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN 386
           G+ ++++++++ A+++   +  A++ MG+   EM++
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 2e-17
 Identities = 33/281 (11%), Positives = 82/281 (29%), Gaps = 26/281 (9%)

Query: 271 IQAQIAKAQYSL----REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL- 325
           ++A +  ++          + ++ +++++L  D     D  +  + L+     + ++ L 
Sbjct: 15  LKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQD-LWNHAFKNQITTLQ 73

Query: 326 -AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM 384
              +             +     +  G + + +        +D       + +G    + 
Sbjct: 74  GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ 133

Query: 385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA 444
            +T A +     +             LG      +    A  Y+R +  L P++ + +  
Sbjct: 134 THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ 191

Query: 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504
           +A              I  Y R+         A   L K                K LE 
Sbjct: 192 LAILAS--SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA-------------LSKALES 236

Query: 505 MEAEEREG--PNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
            +  + +    + ++A I    H       E+      +L 
Sbjct: 237 RDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 3e-12
 Identities = 20/190 (10%), Positives = 46/190 (24%), Gaps = 13/190 (6%)

Query: 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414
           +S  Y R+A  L  +   +       +   +      D Y++ +  +             
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDL 60

Query: 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474
           +             +      PN S +   ++   E        + ++      N +   
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLE-AASGFYTQLLQELCTVFNVDLPC 119

Query: 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE 534
            +  +QL  + +                                L+ L    R   +  +
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS---------YICQHCLVHLGDIARYRNQTSQ 170

Query: 535 AEVYCTRLLD 544
           AE Y      
Sbjct: 171 AESYYRHAAQ 180

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 22/212 (10%), Positives = 54/212 (25%), Gaps = 8/212 (3%)

Query: 211 NAWSELKSLCTSIDILNSLNLNN---HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF 267
             W+  ++L      +   +L       ++      A++      +   K          
Sbjct: 28  EVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEV 87

Query: 268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAH 327
              +   +  A     +  Q       +   D            +   +   SA+     
Sbjct: 88  QANLSLFLEAASGFYTQLLQ---ELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144

Query: 328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNT 387
                          +G+    + Q  ++  Y+R A +L  +    +  +        + 
Sbjct: 145 SSCSYICQHCLVH--LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH 202

Query: 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419
              I  Y R++ +      A   L +A     
Sbjct: 203 LTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 27/163 (16%)

Query: 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK---------------CY 464
           M L +  Y R++  L+ + +   +  A+ +       L++  +                 
Sbjct: 1   MSLQSAQYLRQAEVLKADMTDSKLGPAEVW--TSRQALQDLYQKMLVTDLEYALDKKVEQ 58

Query: 465 RRAANCNDSEAIALNQLAKLHHALGRDE----------EAAFYYKKDLERMEAEEREGPN 514
               +   ++   L   AK      R E           A+ +Y + L+ +         
Sbjct: 59  DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118

Query: 515 MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL 557
                  L                 +    Y       HL ++
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDI 161

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.4 bits (158), Expect = 8e-13
 Identities = 23/160 (14%), Positives = 55/160 (34%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN   +  ++ ++   + RA+  +      +T     Y++M+    A+   RRA++++ +
Sbjct: 11  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
             +A + LGQ    M     A+   +++  L       +                 +I+ 
Sbjct: 71  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
            R          +     A+    L   +     ++ D  
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGH 170

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 1e-10
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 2/124 (1%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
            G+     +  P A   Y RA+  NP     +      Y  M  P  AL   R+++ L  
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 496
              +    + QC    ++   +EAI   +RA +    + +           + + +    
Sbjct: 70  QSVKAHFFLGQCQ--LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127

Query: 497 YYKK 500
             ++
Sbjct: 128 IEER 131

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 14/185 (7%), Positives = 48/185 (25%), Gaps = 5/185 (2%)

Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333
           +     +  R++ +    +   +  +P         +      +          R    D
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393
               ++   +G        +++++   +RA  L K     +       + +     A   
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AKKK 123

Query: 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
              +++       +         +       L   +++     +D  +    A       
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183

Query: 454 LHMLE 458
            +M +
Sbjct: 184 KYMAD 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 23/180 (12%), Positives = 53/180 (29%)

Query: 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY 370
           N L+    +   +    R    +             Y    Q E+++   RRAL+LD   
Sbjct: 12  NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71

Query: 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRK 430
           + A   +G   +EM++   AI   +RA  +       +     +   +           +
Sbjct: 72  VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEER 131

Query: 431 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 490
            +  +         +       +L   +   + +    +    +A    +  K    +  
Sbjct: 132 RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 12/134 (8%), Positives = 35/134 (26%), Gaps = 3/134 (2%)

Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
           +GQ ++++     A+K      S  +          +   A +   +++ + P       
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 410 GLGQAYEMMHMPLYAL-HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468
            L    +                V  +  +    +         Q +  E+  +   +  
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY--EQVSELALQIE 126

Query: 469 NCNDSEAIALNQLA 482
                +    N  +
Sbjct: 127 ELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.2 bits (148), Expect = 5e-11
 Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 1/126 (0%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
               +       A++    A+  +P+D        +   +      A     +S+ L P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 497
                  +    +  Q    + A           + E         L       E+ +  
Sbjct: 63  YLPGASQLRHLVKAAQARK-DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 498 YKKDLE 503
             +  E
Sbjct: 122 ALQIEE 127

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 34/290 (11%), Positives = 67/290 (23%), Gaps = 19/290 (6%)

Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333
           +    +    +     ++FE  ++ DP  ++            E          R     
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH-------------- 379
                +   +   ++ +    ++    R  L+    Y    T                  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 380 -EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
              +         + +  AV ++P         G          Y       +  L    
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203

Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYY 498
           +   +           +  EEA+  YRRA         +   L      LG   EA  ++
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263

Query: 499 KKDLE----RMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
            + L             G         L       G+ +       R L 
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 313

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 52/339 (15%), Positives = 102/339 (30%), Gaps = 33/339 (9%)

Query: 170 KNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSL 229
           +N   D    +  G+    +G+   A  +F  +V   P +  AW  L +           
Sbjct: 13  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ--------A 64

Query: 230 NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVE 289
                 +    L    +    ++ +L          S        +         +  + 
Sbjct: 65  ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 124

Query: 290 VIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL 349
              EE             + S +  +        +LA          P+  C +G  ++L
Sbjct: 125 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184

Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
            G+++K+V  F  AL +  N    W  +G        +  A+ AYRRA+++ P   R+ Y
Sbjct: 185 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244

Query: 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469
            LG +   +     A+ +F +++ +Q              E                   
Sbjct: 245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN------------------ 286

Query: 470 CNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508
                    + L      LG+ +       +DL  +   
Sbjct: 287 -------IWSTLRLALSMLGQSDAYGAADARDLSTLLTM 318

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.2 bits (142), Expect = 3e-10
 Identities = 20/233 (8%), Positives = 57/233 (24%), Gaps = 9/233 (3%)

Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS---ALSYLAHRVF 330
                + S    +      E  LR +P           +L      +    L   A  + 
Sbjct: 78  TEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137

Query: 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
             ++                    + + +    +  + +  S+W        ++   P +
Sbjct: 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197

Query: 391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
               R   ++  ++                   +  ++ + +  +           +   
Sbjct: 198 GPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST 253

Query: 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
              L    E+ K  +     N    + +  L +    L  ++E   Y+     
Sbjct: 254 --VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.4 bits (132), Expect = 7e-09
 Identities = 27/273 (9%), Positives = 61/273 (22%), Gaps = 22/273 (8%)

Query: 241 LASAYQELRMHKESLTKYEYLQGTF--SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
             S  +   + K  L   E        S+  +       ++     + +   +    L  
Sbjct: 79  EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138

Query: 299 DPYRVDDMDMYSNVLY--AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKS 356
           D       D    V    A      L++    +         S                S
Sbjct: 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDS 197

Query: 357 VVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416
               R    +    L                  +   Y R +              +   
Sbjct: 198 GPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST 253

Query: 417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476
           ++   L +    ++            I + +  +   L   +E ++ +      +   A 
Sbjct: 254 VLQSELESCKELQELEPENKWCLLTIILLMRALD--PLLYEKETLQYFSTLKAVDPMRAA 311

Query: 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 509
            L+ L              F  +  + +ME  +
Sbjct: 312 YLDDLRS-----------KFLLENSVLKMEYAD 333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 31/311 (9%), Positives = 81/311 (26%), Gaps = 10/311 (3%)

Query: 156 RELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSE 215
           +   S  + +    + G +D   L L   +L    +         E +       +    
Sbjct: 26  KLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEES 85

Query: 216 LKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK-----YEYLQGTFSFSNY 270
              +   +  L S    N      +    +   R+ + +  +       +L+      + 
Sbjct: 86  AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC 145

Query: 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF 330
              +   A  +     +     + L+  +          S +L            +    
Sbjct: 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD----SGPQG 201

Query: 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
              +        +         +++S  ++ R L      L    L   +   +++   +
Sbjct: 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261

Query: 391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
               +     N         L +A + +      L YF     + P  +     +   + 
Sbjct: 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321

Query: 451 TE-QLHMLEEA 460
            E  +  +E A
Sbjct: 322 LENSVLKMEYA 332

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 18/196 (9%), Positives = 44/196 (22%), Gaps = 19/196 (9%)

Query: 354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY---- 409
           +       R  KL K Y SA   +  +    +   + ++   + +  NP     W     
Sbjct: 13  QAEAKRLEREQKL-KLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRRE 71

Query: 410 ------GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
                       E   +    L +    + + P     W                  ++ 
Sbjct: 72  VLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 131

Query: 464 YRRAANCNDSEA-IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 522
             R    ++        +      A     E   +    + R         +   +  + 
Sbjct: 132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYR 184

Query: 523 ATHCRAHGRFEEAEVY 538
           +          ++   
Sbjct: 185 SCLLPQLHPQPDSGPQ 200

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 54.8 bits (130), Expect = 6e-09
 Identities = 37/261 (14%), Positives = 72/261 (27%), Gaps = 8/261 (3%)

Query: 237 KDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQI----AKAQYSLREFEQVEVIF 292
           K   LA   Q     +  L + E +  + + ++  +AQ+         SL         F
Sbjct: 1   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF 60

Query: 293 EELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ 352
            + L   P   +  +     L     F A       V   D     +    G      G+
Sbjct: 61  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120

Query: 353 HEKSVVYFRRALKLDKN--YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
            + +        + D N  + S W  +  + ++ K     +  +    D     +     
Sbjct: 121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 180

Query: 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470
                    +          +  L  + S     + + Y    L  L+ A   ++ A   
Sbjct: 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL--SLGDLDSATALFKLAVAN 238

Query: 471 NDSEAIALNQLAKLHHALGRD 491
           N    +           LG+D
Sbjct: 239 NVHNFVEHRYALLELSLLGQD 259

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 26/167 (15%), Positives = 46/167 (27%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
           PE    +G Y +  G  + +   F   L+LD  Y  A    G           A D    
Sbjct: 71  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 130

Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456
               +P D      L  A + +          +             I         +  +
Sbjct: 131 FYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTL 190

Query: 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503
           +E          +  +  +     L K + +LG  + A   +K  + 
Sbjct: 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 7/224 (3%)

Query: 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
           + +  +     +TD  R +     G  Y   G    +   F +AL +  +    +  +G 
Sbjct: 20  ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 79

Query: 380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
              +  N  AA +A+   ++++P    A    G A         A           PND 
Sbjct: 80  YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 139

Query: 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499
              + +    +       +E +K +   ++        +             E       
Sbjct: 140 FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT 199

Query: 500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543
            +            ++ E   +L  +  + G  + A       +
Sbjct: 200 DNTSLA-------EHLSETNFYLGKYYLSLGDLDSATALFKLAV 236

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 34/275 (12%), Positives = 73/275 (26%), Gaps = 27/275 (9%)

Query: 147 PLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSY 206
           PL  +      L  +E+ L++           LY  G++    G   LAR  F +++   
Sbjct: 8   PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 67

Query: 207 PWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS 266
           P     +                          +L     +      +   ++ +     
Sbjct: 68  PDMPEVF-------------------------NYLGIYLTQAGNFDAAYEAFDSVLELDP 102

Query: 267 FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326
             NY       A Y     +  +       ++DP                +   A   L 
Sbjct: 103 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 162

Query: 327 HRVFMTDK--YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM 384
                +DK  +            S +   E+          L ++       +G  Y+ +
Sbjct: 163 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 222

Query: 385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419
            +  +A   ++ AV  N  ++           ++ 
Sbjct: 223 GDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 22/133 (16%), Positives = 54/133 (40%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
            N Y     +E ++ ++ +A++L+ +    +      Y+  +    A+    RA++++ +
Sbjct: 17  ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 76

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463
             + +Y    +   +     AL  +   V ++P+D    +   +C +  +    E AI  
Sbjct: 77  YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136

Query: 464 YRRAANCNDSEAI 476
                +  DS  I
Sbjct: 137 DEHKRSVVDSLDI 149

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 6e-08
 Identities = 18/181 (9%), Positives = 48/181 (26%), Gaps = 3/181 (1%)

Query: 363 ALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422
            +     +   +          + +  A    R A+++N  +Y  W+      + +   L
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 423 -YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481
              ++Y    +  QP + ++W         E L    + ++      N +     A    
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLV--EWLRDPSQELEFIADILNQDAKNYHAWQHR 152

Query: 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541
             +       +    Y  + L+               +     +        E +     
Sbjct: 153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212

Query: 542 L 542
           +
Sbjct: 213 I 213

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 10/115 (8%), Positives = 27/115 (23%), Gaps = 3/115 (2%)

Query: 380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLY---ALHYFRKSVFLQP 436
           E V +++       ++             +                  +    + +    
Sbjct: 8   ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS 67

Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 491
            + +            +L   E+A+K  R           A      +  A+ +D
Sbjct: 68  KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
           G++ + + N   A+  Y  A+ ++P ++  +     AY        A     K+V L+P+
Sbjct: 10  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69

Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485
             + +   A   E   L+  EEA + Y        +       L  + 
Sbjct: 70  WGKGYSRKAAALE--FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 17/107 (15%), Positives = 41/107 (38%)

Query: 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403
           GN     G  + ++  +  A+KLD +    ++     Y +  +   A +   + VD+ P 
Sbjct: 10  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69

Query: 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
             + +     A E ++    A   + + +  + N+ +L   +     
Sbjct: 70  WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 18/153 (11%)

Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVD---------------INPRDYRAWYGLGQAYEM 417
                G  Y +      A+  Y++ V                       +   L   +  
Sbjct: 15  IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 74

Query: 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 477
           +     A+    K++ L  N+ +      + +    ++  E A   +++      +   A
Sbjct: 75  LQAFSAAIESCNKALELDSNNEKGLSRRGEAHL--AVNDFELARADFQKVLQLYPNNKAA 132

Query: 478 LNQLAKLHHALGRDEEA-AFYYKKDLERMEAEE 509
             QLA     + R        Y    ER+  EE
Sbjct: 133 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 165

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 19/157 (12%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
           E    IGN +      E ++  + + L+  +   +A                        
Sbjct: 28  EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA----------------- 70

Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457
             + P        +G     M     A+    +++ + P++++     AQ ++   L   
Sbjct: 71  -KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ--GLKEY 127

Query: 458 EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494
           ++A+   ++A      +     +L K+   +   ++ 
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 21/143 (14%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
            G    + K+   A+DA+     +     R  + +G  Y ++     A   F +S+    
Sbjct: 11  EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA----------------IALNQ 480
           + +  +      Y        + AIK  + A                          L  
Sbjct: 68  HLAVAYFQRGMLYYQT--EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN 125

Query: 481 LAKLHHALGRDEEAAFYYKKDLE 503
           +A ++      ++A         
Sbjct: 126 IAFMYAKKEEWKKAEEQLALATS 148

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 16/126 (12%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
              C  IG  Y++     ++   F R++  DK+   A+   G  Y + +    AI   + 
Sbjct: 36  SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 95

Query: 397 AVDINPRDY----------------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440
           A+     +                    Y +   Y        A      +  ++     
Sbjct: 96  ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155

Query: 441 LWIAMA 446
             I  A
Sbjct: 156 SKIDKA 161

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 17/185 (9%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDY------RAWYGLGQAYEMMHMPLYALHYFRK 430
               Y   K    A D++ +A D   +          +    + ++     + A+     
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 431 SVFLQPNDSRLWIA-----MAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALN 479
           ++ +  +  +                  LH   +AI CY  A      +           
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162

Query: 480 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539
           + A L    G+  EA+  Y K ++          ++ +  +       A      A    
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222

Query: 540 TRLLD 544
                
Sbjct: 223 QEGQS 227

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 18/255 (7%), Positives = 62/255 (24%), Gaps = 27/255 (10%)

Query: 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300
            A+ Y+  +    +   +      +      + +         +  +        +    
Sbjct: 43  AATIYRLRKELNLAGDSFLKA-ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV---D 98

Query: 301 YRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
              + + ++++    +   +    L            E      + Y+      +    +
Sbjct: 99  SLENAIQIFTHRGQFRRGANFKFELG-----------EILENDLHDYAKAIDCYELAGEW 147

Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
               +        +               A D Y + +  +  +  + + L   +    +
Sbjct: 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207

Query: 421 PLY-------ALHYFRKSVFLQPN-----DSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468
                     A    ++     PN     +S    ++           L E  K +    
Sbjct: 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267

Query: 469 NCNDSEAIALNQLAK 483
             +  +   LN++ +
Sbjct: 268 RLDKWKITILNKIKE 282

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 15/115 (13%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
           +G++  + K+   A+  Y +A +++P +          Y              K++ +  
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 437 NDSRLWIAMAQCYET-----EQLHMLEEAIKCYRRAANCNDSEAIA--LNQLAKL 484
            +   +  +A+ Y        +    ++AI  Y ++   + +  +     Q  K+
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 11/93 (11%), Positives = 33/93 (35%)

Query: 453 QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512
           +    + A+K Y +A   + +    +   A ++   G   +     +K +E       + 
Sbjct: 16  KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75

Query: 513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545
             + +A   +        ++++A  +  + L  
Sbjct: 76  RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 18/149 (12%)

Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYR---------------AWYGLGQAYEMMHMP 421
            G  Y +      A+  Y + V     +Y                A+  L   Y  +   
Sbjct: 21  KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 80

Query: 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481
             A+    K++ L   + +      +      ++  E A   + +    N     A  Q+
Sbjct: 81  TKAVECCDKALGLDSANEKGLYRRGEAQL--LMNEFESAKGDFEKVLEVNPQNKAARLQI 138

Query: 482 AKLHHALGR-DEEAAFYYKKDLERMEAEE 509
                     +E     Y    ++   ++
Sbjct: 139 FMCQKKAKEHNERDRRTYANMFKKFAEQD 167

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 31/286 (10%), Positives = 66/286 (23%), Gaps = 26/286 (9%)

Query: 275 IAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK 334
           +A  Q + +   Q +V    L                    +    A   +  +      
Sbjct: 71  LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 130

Query: 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV------------ 382
                  I         + +++    R  +++  +Y     L     +            
Sbjct: 131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 190

Query: 383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL- 441
                    +        +     A       ++M      A ++ R +   +  ++   
Sbjct: 191 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250

Query: 442 ---WIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------EAIALNQLAKLHHALGRDE 492
              W  +A+      L   E A            S          L  L +L+   GR  
Sbjct: 251 QGQWRNIARAQI--LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308

Query: 493 EAAFYYKKDLERMEAEEREGPNMVE--ALIFLATHCRAHGRFEEAE 536
           +A       L+           ++E  A+              E E
Sbjct: 309 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT-------LMGHEYVEMKNTPA 389
            E    +G     +  +  + ++  +AL+       +          + +   +  +   
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMM 418
           A+   ++ ++++P   RA   L     +M
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLKYFEYIM 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	557
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.89
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.85
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.7
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.66
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.65
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.58
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.47
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.47
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.47
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.45
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.16
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.97
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.83
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.17
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.16
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.15
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.13
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.89
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.68
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.91

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-39  Score=313.92  Aligned_cols=375  Identities=19%  Similarity=0.198  Sum_probs=348.8

Q ss_pred             HHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCC
Q 008705           95 LLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTV  174 (557)
Q Consensus        95 ~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~  174 (557)
                      .+|..+|..|+|++|+..|++++                                                    +.+|.
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l----------------------------------------------------~~~p~   31 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLW----------------------------------------------------RQEPD   31 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHH----------------------------------------------------HHCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH----------------------------------------------------HhCCC
Confidence            47889999999999998776641                                                    12588


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      ++.+++.+|.++...|++++|+..|+++++.+|.+..+|..+                         |.++...|++++|
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l-------------------------~~~~~~~g~~~~A   86 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL-------------------------GNVYKERGQLQEA   86 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHHhhhhcccccc
Confidence            899999999999999999999999999999999999988776                         9999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC
Q 008705          255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK  334 (557)
Q Consensus       255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (557)
                      +..+..+....|.........+......+....+...........+.............................+...|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T d1w3ba_          87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP  166 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCc
Confidence            99999999999999999999999999999999999999999988888888888888888888889999999999999999


Q ss_pred             CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      ..+.++..+|..+...|++++|...++++++.+|++..++..+|.++...|++++|+..++++...+|.....+..+|.+
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  246 (388)
T d1w3ba_         167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV  246 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      +...|++++|+..|+++++++|+++.++..+|.++..  .|++++|+..+++++...|.+..++..+|.++...|++++|
T Consensus       247 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE--KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhc
Q 008705          495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKN  556 (557)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~~  556 (557)
                      +.+|+++++       ..|+++.+++.+|.++...|++++|+.+|+++++++|.+ ..++.+
T Consensus       325 ~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~  378 (388)
T d1w3ba_         325 VRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSN  378 (388)
T ss_dssp             HHHHHHHTT-------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHH
T ss_pred             HHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence            999999998       789999999999999999999999999999999998654 455544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=288.07  Aligned_cols=358  Identities=19%  Similarity=0.193  Sum_probs=318.0

Q ss_pred             cchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705           88 VEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST  167 (557)
Q Consensus        88 ~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  167 (557)
                      ......+.+|.+|+..|+|++|+..|++++                                                  
T Consensus        31 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------------------------------------------------   60 (388)
T d1w3ba_          31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI--------------------------------------------------   60 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------------------
Confidence            345778889999999999999999877642                                                  


Q ss_pred             hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705          168 SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE  247 (557)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~  247 (557)
                        +.+|.++.+++.+|.++...|++++|+..+..+++.+|.....+...                         +.....
T Consensus        61 --~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~  113 (388)
T d1w3ba_          61 --KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL-------------------------AAALVA  113 (388)
T ss_dssp             --HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHH
T ss_pred             --HhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccc-------------------------cccccc
Confidence              12588899999999999999999999999999999999998877655                         555556


Q ss_pred             HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHH
Q 008705          248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAH  327 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (557)
                      .+....+...........+.........+......+....+...+.+.+...|.....+..++.++...+....+.....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  193 (388)
T d1w3ba_         114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE  193 (388)
T ss_dssp             HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHH
Confidence            66666666666666666666777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705          328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA  407 (557)
Q Consensus       328 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  407 (557)
                      +++..+|.++.++..+|.++...|++++|+..|+++...+|.....+..+|.++...|++++|+..|+++++++|+++.+
T Consensus       194 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  273 (388)
T d1w3ba_         194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA  273 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            77778888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA  487 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  487 (557)
                      +..+|.++...|++++|+..+++++...|.++..+..+|.++..  .|++++|+.+|+++++++|+++.++..+|.++..
T Consensus       274 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE--QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999  9999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705          488 LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR  531 (557)
Q Consensus       488 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  531 (557)
                      .|++++|+.+|+++++       .+|+++.++.++|.+|.++||
T Consensus       352 ~g~~~~A~~~~~~al~-------l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         352 QGKLQEALMHYKEAIR-------ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCCHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999       799999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-29  Score=238.62  Aligned_cols=283  Identities=17%  Similarity=0.121  Sum_probs=234.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES  254 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A  254 (557)
                      +....+..|..+++.|++++|+..|+++++.+|.+..+|..+                         |.++...|++++|
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l-------------------------g~~~~~~~~~~~A   72 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL-------------------------GTTQAENEQELLA   72 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH-------------------------HHHHHHTTCHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHHHHHcCChHHH
Confidence            445578999999999999999999999999999999999777                         9999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC
Q 008705          255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK  334 (557)
Q Consensus       255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (557)
                      +..|.++++++|++...+..+|.++...|++++|+..+++++...|...............                   
T Consensus        73 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  133 (323)
T d1fcha_          73 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------  133 (323)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------
T ss_pred             HHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhh-------------------
Confidence            9999999999999999999999999999999999999999999999765433221110000                   


Q ss_pred             CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC--HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705          335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY--LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG  412 (557)
Q Consensus       335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  412 (557)
                      ............+...+.+.+|+..|.+++..+|+.  +.++..+|.++...|++++|+..|++++..+|+++.+|..+|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  213 (323)
T d1fcha_         134 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG  213 (323)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhh
Confidence            000011112223445677889999999999999874  577889999999999999999999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH-----------HHHHH
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI-----------ALNQL  481 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~l  481 (557)
                      .++..+|++++|+.+|+++++++|+++.+|..+|.++..  .|++++|+..|+++++++|++..           ++..+
T Consensus       214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l  291 (323)
T d1fcha_         214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN--LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL  291 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred             hcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999  99999999999999999887654           34556


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 008705          482 AKLHHALGRDEEAAFYYKKDLE  503 (557)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~  503 (557)
                      +.++...|+.+.+...-.+.++
T Consensus       292 ~~al~~~~~~d~~~~~~~~~l~  313 (323)
T d1fcha_         292 RLALSMLGQSDAYGAADARDLS  313 (323)
T ss_dssp             HHHHHHHTCGGGHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCHH
Confidence            6677667766655544444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-27  Score=226.42  Aligned_cols=265  Identities=14%  Similarity=0.077  Sum_probs=225.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      +..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++.+|.                 
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----------------   85 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-----------------   85 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-----------------
Confidence            456999999999999999999999999999999999999999999999999999999998886                 


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHH---------------HHHhHHHHh
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW---------------TLMGHEYVE  383 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------------~~l~~~~~~  383 (557)
                                       ++..+..+|.+|...|++++|+..+++++...|.....+               ......+..
T Consensus        86 -----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (323)
T d1fcha_          86 -----------------NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS  148 (323)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred             -----------------cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence                             456777888888899999999999999988887653321               122334455


Q ss_pred             cCCchHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHH
Q 008705          384 MKNTPAAIDAYRRAVDINPRD--YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI  461 (557)
Q Consensus       384 ~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~  461 (557)
                      .+.+.+|+..|.+++..+|+.  +.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++..  .|++++|+
T Consensus       149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~  226 (323)
T d1fcha_         149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN--GNQSEEAV  226 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccc--cccchhHH
Confidence            677899999999999999875  67788999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc----CCcchHHHHHHHHHHHHHcCCHHHHHH
Q 008705          462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER----EGPNMVEALIFLATHCRAHGRFEEAEV  537 (557)
Q Consensus       462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~  537 (557)
                      .+|+++++++|+++.+++.+|.+|...|++++|+.+|+++++..+....    .......++..++.++...|+.+.+..
T Consensus       227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999994332111    112233456667878887887765544


Q ss_pred             HH
Q 008705          538 YC  539 (557)
Q Consensus       538 ~~  539 (557)
                      ..
T Consensus       307 ~~  308 (323)
T d1fcha_         307 AD  308 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-24  Score=201.32  Aligned_cols=251  Identities=10%  Similarity=0.059  Sum_probs=217.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705          240 FLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR-EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC  318 (557)
Q Consensus       240 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  318 (557)
                      .+|.++.+.+.+++|+..++++++++|.+..+|..+|.++...| ++++|+..++++++.+|.                 
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-----------------  110 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-----------------  110 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----------------
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-----------------
Confidence            45889999999999999999999999999999999999999876 599999999999999887                 


Q ss_pred             hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705          319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV  398 (557)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  398 (557)
                                       +..+|..+|.++...|++++|+.++.++++++|++..+|..+|.++...|++++|+..|++++
T Consensus       111 -----------------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al  173 (315)
T d2h6fa1         111 -----------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  173 (315)
T ss_dssp             -----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             -----------------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                             568888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHhCC------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705          399 DINPRDYRAWYGLGQAYEMMHM------PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       399 ~~~p~~~~~~~~l~~~~~~~~~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p  472 (557)
                      +++|.+..+|+.+|.++...+.      +++|+..+.++++++|++..+|..++.++..  .| .+++...+++++.+.|
T Consensus       174 ~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~--~~-~~~~~~~~~~~~~l~~  250 (315)
T d2h6fa1         174 KEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--RG-LSKYPNLLNQLLDLQP  250 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT--TC-GGGCHHHHHHHHHHTT
T ss_pred             HHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh--cC-hHHHHHHHHHHHHhCC
Confidence            9999999999999999988877      5789999999999999999999999998766  44 5888999999988877


Q ss_pred             C--hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-hcCCcchHHHHHHHHHHHH
Q 008705          473 S--EAIALNQLAKLHHAL--GRDEEAAFYYKKDLERMEAE-EREGPNMVEALIFLATHCR  527 (557)
Q Consensus       473 ~--~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~  527 (557)
                      .  ++.++..++.+|...  ++.+.+...++++++.+... ...+|-....|..++....
T Consensus       251 ~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~  310 (315)
T d2h6fa1         251 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  310 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            5  466777788887554  66667777777777654331 2356767777777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.7e-24  Score=201.36  Aligned_cols=239  Identities=8%  Similarity=0.036  Sum_probs=206.2

Q ss_pred             hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH
Q 008705          263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI  342 (557)
Q Consensus       263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (557)
                      ...|+..+++..+|.++...+.+++|+..++++++++|.                                  +..+|..
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~----------------------------------~~~a~~~   82 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----------------------------------NYTVWHF   82 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----------------------------------CHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC----------------------------------ChHHHHH
Confidence            345667788888999999999999999999999999887                                  4678888


Q ss_pred             HHHHHhhhC-chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705          343 IGNYYSLKG-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP  421 (557)
Q Consensus       343 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  421 (557)
                      +|.++...| ++++|+.+++++++.+|++..+|..+|.++..+|++++|+..++++++++|++..+|..+|.++...|++
T Consensus        83 r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~  162 (315)
T d2h6fa1          83 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  162 (315)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhh
Confidence            999988876 5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705          422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM------LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA  495 (557)
Q Consensus       422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  495 (557)
                      ++|+..|+++++++|.+..+|..+|.++..  .+.      +++|+..+.+++.++|++..++..++.++...| ..++.
T Consensus       163 ~~Al~~~~~al~~~p~n~~a~~~r~~~l~~--~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~  239 (315)
T d2h6fa1         163 DNELQYVDQLLKEDVRNNSVWNQRYFVISN--TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYP  239 (315)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCH
T ss_pred             HHHHHHHHHHHHHCCccHHHHHHHHHHHHH--ccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHH
Confidence            999999999999999999999999999887  665      689999999999999999999999999876554 68888


Q ss_pred             HHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 008705          496 FYYKKDLERMEAEEREGPNMVEALIFLATHCRAH--GRFEEAEVYCTRLL  543 (557)
Q Consensus       496 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al  543 (557)
                      ..++++++..     ..+..+.++..++.++...  ++.+.+...+.+++
T Consensus       240 ~~~~~~~~l~-----~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~  284 (315)
T d2h6fa1         240 NLLNQLLDLQ-----PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL  284 (315)
T ss_dssp             HHHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHhC-----CCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999888731     2345567777888877543  44334444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4.6e-25  Score=211.30  Aligned_cols=282  Identities=10%  Similarity=-0.025  Sum_probs=233.2

Q ss_pred             HhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705          187 KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS  266 (557)
Q Consensus       187 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p  266 (557)
                      ...+..++|+.+++++++.+|++.++|.....++....               ..+..+...|++.+|+..+++++..+|
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~---------------~~~~~~~~~~~~~~al~~~~~~l~~~p  104 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLE---------------TEKSPEESAALVKAELGFLESCLRVNP  104 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------TTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh---------------hhcchHHHHHHHHHHHHHHHHHHHhCC
Confidence            34445589999999999999999999977755543322               125567888999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705          267 FSNYIQAQIAKAQYSLRE--FEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG  344 (557)
Q Consensus       267 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  344 (557)
                      ++..++..+|.++...++  +++|+..+.+++..+|.+..+                                 .+...|
T Consensus       105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~---------------------------------~~~~~~  151 (334)
T d1dcea1         105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC---------------------------------WDYRRF  151 (334)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHH---------------------------------HHHHHH
T ss_pred             CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhh---------------------------------hhhHHH
Confidence            999999999999888765  899999999999999875322                                 234567


Q ss_pred             HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705          345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA  424 (557)
Q Consensus       345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  424 (557)
                      .++...+.+++|+.+++++++.+|.+..+|..+|.++..+|++++|+..+++++.+.|.....+    ..+..++..+++
T Consensus       152 ~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a  227 (334)
T d1dcea1         152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQS  227 (334)
T ss_dssp             HHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSH
T ss_pred             HHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHH
Confidence            7888888888999999999999999999999999999999998888888888888777654433    345566778888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          425 LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       425 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      ...|.+++...|.+...+..+|.++..  .|++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++ 
T Consensus       228 ~~~~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~-  304 (334)
T d1dcea1         228 AWFYHRWLLGRAEPLFRCELSVEKSTV--LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-  304 (334)
T ss_dssp             HHHHHHHHHSCCCCSSSCCCCHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHH--HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence            888888888888888888888888888  88899999999999888888888899999999999999999999999888 


Q ss_pred             HHhhhcCCcchHHHHHHHHHHHHHc
Q 008705          505 MEAEEREGPNMVEALIFLATHCRAH  529 (557)
Q Consensus       505 ~~~~~~~~~~~~~~~~~la~~~~~~  529 (557)
                            .+|.....|..|+..+.-.
T Consensus       305 ------ldP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         305 ------VDPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             ------HCGGGHHHHHHHHHHHHHH
T ss_pred             ------HCcccHHHHHHHHHHHhHh
Confidence                  6888888888887777643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.5e-22  Score=186.11  Aligned_cols=207  Identities=13%  Similarity=0.044  Sum_probs=172.2

Q ss_pred             CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705          335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA  414 (557)
Q Consensus       335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  414 (557)
                      ..+.+++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+++.++..+|.+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  114 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----HcCC
Q 008705          415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH----ALGR  490 (557)
Q Consensus       415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~g~  490 (557)
                      +..+|++++|+..|+++++.+|.+......++.++..  .+..+.+...........+.....  .+...+.    ..+.
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  190 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK--LDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTL  190 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH--hhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888888888  887776666666666555544321  1122221    1222


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 008705          491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT  552 (557)
Q Consensus       491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  552 (557)
                      .+.+...+.....       ..|....+++.+|.++...|++++|+.+|++++..+|.+...
T Consensus       191 ~~~~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         191 MERLKADATDNTS-------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HHHHHHHCCSHHH-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHHHhhh-------cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence            3444444444444       457788899999999999999999999999999999876544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=9.1e-24  Score=202.16  Aligned_cols=257  Identities=11%  Similarity=-0.038  Sum_probs=223.0

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL----------REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      .++|+..+++++..+|++..+|..++.++...          |++++|+.+++++++.+|.                   
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-------------------  105 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-------------------  105 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-------------------
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-------------------
Confidence            48999999999999999998887777665443          4467777777777777765                   


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhC--chHHHHHHHHHHHhcCcCCHHHH-HHHhHHHHhcCCchHHHHHHHHH
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKG--QHEKSVVYFRRALKLDKNYLSAW-TLMGHEYVEMKNTPAAIDAYRRA  397 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~A~~~~~~a  397 (557)
                                     ++.+|..+|.++...+  ++++|+..+++++..+|.+..++ ...|.++...+++++|+..++++
T Consensus       106 ---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~  170 (334)
T d1dcea1         106 ---------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (334)
T ss_dssp             ---------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             ---------------cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHH
Confidence                           5677777887777765  48999999999999999998886 46788999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH
Q 008705          398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA  477 (557)
Q Consensus       398 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  477 (557)
                      +..+|.+..+|+.+|.++..+|++++|+..+++++.+.|.....+.    .+..  .+..+++...+.+++...|.+...
T Consensus       171 i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~--l~~~~~a~~~~~~~l~~~~~~~~~  244 (334)
T d1dcea1         171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFF--TDPNDQSAWFYHRWLLGRAEPLFR  244 (334)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH----HHHH--HCSSCSHHHHHHHHHHSCCCCSSS
T ss_pred             HHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHH----HHHH--hcchhHHHHHHHHHHHhCcchhhH
Confidence            9999999999999999999999999999999998888776554433    3455  777889999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 008705          478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLK  555 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~  555 (557)
                      +..++.++...|++.+|+..+.+++.       .+|.+..++..+|.++...|++++|+.+|+++++++|. +...+.
T Consensus       245 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~  314 (334)
T d1dcea1         245 CELSVEKSTVLQSELESCKELQELEP-------ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLD  314 (334)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh-------hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHH
Confidence            99999999999999999999999998       89999999999999999999999999999999999974 344443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-19  Score=173.40  Aligned_cols=317  Identities=12%  Similarity=-0.022  Sum_probs=249.7

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705          174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE  253 (557)
Q Consensus       174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~  253 (557)
                      ..+.+..++|.++...|++++|+..|++++...|.+......                    .....+|.++...|++++
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~--------------------~a~~~lg~~~~~~g~~~~   69 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI--------------------VATSVLGEVLHCKGELTR   69 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHH--------------------HHHHHHHHHHHHHTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHH--------------------HHHHHHHHHHHHCCCHHH
Confidence            456788899999999999999999999999999987543211                    123456999999999999


Q ss_pred             HHHHHHHHHhcCCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHH
Q 008705          254 SLTKYEYLQGTFSF------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAH  327 (557)
Q Consensus       254 A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (557)
                      |+..|++++...+.      ....+..++.++...|++..|...+.+++...+....                       
T Consensus        70 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~-----------------------  126 (366)
T d1hz4a_          70 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL-----------------------  126 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc-----------------------
Confidence            99999999876432      2346788899999999999999999999876543211                       


Q ss_pred             HHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC
Q 008705          328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP  402 (557)
Q Consensus       328 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  402 (557)
                         ...+.....+..+|.++...|+++.+...+.+++...+.     ...++...+..+...+++.++...+.++....+
T Consensus       127 ---~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  203 (366)
T d1hz4a_         127 ---EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  203 (366)
T ss_dssp             ---TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             ---chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence               011112345667899999999999999999999987554     345678889999999999999999999887644


Q ss_pred             CC-------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-
Q 008705          403 RD-------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-  470 (557)
Q Consensus       403 ~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-  470 (557)
                      ..       ..++..+|.++...|++++|...+++++...|.+    ...+..+|.++..  .|++++|+..+++++.. 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         204 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--LGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHH
T ss_pred             HhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence            32       4567788999999999999999999999887655    4567889999999  99999999999999853 


Q ss_pred             -----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC--cchHHHHHHHHHHHHHcCCHHHHHHH
Q 008705          471 -----NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG--PNMVEALIFLATHCRAHGRFEEAEVY  538 (557)
Q Consensus       471 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~  538 (557)
                           .|....++..+|.+|...|++++|+..++++++.....+...  .........+...+...++.+++...
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence                 455577999999999999999999999999998544322111  12234455566667777877777654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2e-20  Score=171.74  Aligned_cols=223  Identities=15%  Similarity=0.038  Sum_probs=184.3

Q ss_pred             hhhHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHH
Q 008705          249 RMHKESLTKYEYLQGTFS----FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSY  324 (557)
Q Consensus       249 ~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  324 (557)
                      .+.+.|+..+++++...+    ....+++.+|.+|...|++++|+..|++++.++|+                       
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-----------------------   69 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----------------------   69 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------------
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-----------------------
Confidence            455677777777776533    35568999999999999999999999999999887                       


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC
Q 008705          325 LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD  404 (557)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  404 (557)
                                 ++.++..+|.+|...|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++.+|.+
T Consensus        70 -----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_          70 -----------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             -----------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence                       567888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH----hHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY----ETEQLHMLEEAIKCYRRAANCNDSEAIALNQ  480 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  480 (557)
                      ......++.++...+....+...........+..+.. . +...+    ..  .+.++.+...+.......|....+++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (259)
T d1xnfa_         139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-N-IVEFYLGNISE--QTLMERLKADATDNTSLAEHLSETNFY  214 (259)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-H-HHHHHTTSSCH--HHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh-h-HHHHHHHHHHH--HHHHHHHHHHHHHhhhcCcccHHHHHH
Confidence            9998888988888888777777766666665554321 1 11111    22  345666666777777777888889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchH
Q 008705          481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV  516 (557)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  516 (557)
                      +|.++...|++++|+.+|++++.       ..|.+.
T Consensus       215 lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~  243 (259)
T d1xnfa_         215 LGKYYLSLGDLDSATALFKLAVA-------NNVHNF  243 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHT-------TCCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH-------cCCCCH
Confidence            99999999999999999999998       677653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6.8e-19  Score=169.10  Aligned_cols=278  Identities=11%  Similarity=-0.058  Sum_probs=232.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705          239 YFLASAYQELRMHKESLTKYEYLQGTFSFS-----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL  313 (557)
Q Consensus       239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  313 (557)
                      ...|.++...|++++|+..++++++..|.+     ..++..+|.++...|++++|+..|++++...+.......      
T Consensus        16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------   89 (366)
T d1hz4a_          16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY------   89 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH------
Confidence            456999999999999999999999998876     346788999999999999999999999987664322111      


Q ss_pred             HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--------CHHHHHHHhHHHHhcC
Q 008705          314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--------YLSAWTLMGHEYVEMK  385 (557)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~  385 (557)
                                            ....+..++.++...|++..|...+.+++.+.+.        ....+..+|.++...|
T Consensus        90 ----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~  147 (366)
T d1hz4a_          90 ----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA  147 (366)
T ss_dssp             ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence                                  2345677899999999999999999999875322        2346778999999999


Q ss_pred             CchHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhHHh
Q 008705          386 NTPAAIDAYRRAVDINPRD-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN-------DSRLWIAMAQCYETEQ  453 (557)
Q Consensus       386 ~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~l~~~~~~~~  453 (557)
                      +++.|...+.+++...+..     ..++...+..+...+++..+...+.++....+.       ...++..++.++..  
T Consensus       148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--  225 (366)
T d1hz4a_         148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM--  225 (366)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--
T ss_pred             chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh--
Confidence            9999999999999876643     456778899999999999999999998875432       23467788999999  


Q ss_pred             cCcHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc
Q 008705          454 LHMLEEAIKCYRRAANCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH  529 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~  529 (557)
                      .|++++|...+++++...+.+    ...+.++|.++...|++++|...+++++.... .....|....++..+|.+|...
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~  304 (366)
T d1hz4a_         226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR-SLRLMSDLNRNLLLLNQLYWQA  304 (366)
T ss_dssp             TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hcccChHHHHHHHHHHHHHHHC
Confidence            999999999999999886654    45678899999999999999999999997433 3345678889999999999999


Q ss_pred             CCHHHHHHHHHHHhccCC
Q 008705          530 GRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       530 g~~~~A~~~~~~al~~~~  547 (557)
                      |++++|.+.+++++++.+
T Consensus       305 g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         305 GRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh
Confidence            999999999999998753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-18  Score=172.95  Aligned_cols=231  Identities=10%  Similarity=-0.027  Sum_probs=139.4

Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHH
Q 008705          194 LARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQA  273 (557)
Q Consensus       194 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  273 (557)
                      +|+++|++|+++.|+..+++..+                         |.++...|++++|   |++++..+|+....+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~l-------------------------a~~~~~~~~l~ea---ye~~i~~dp~~a~~~~   55 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGP-------------------------AEVWTSRQALQDL---YQKMLVTDLEYALDKK   55 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCS-------------------------SSSHHHHHHHHHH---HHHHHHHCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhH-------------------------HHHHHHHchHHHH---HHHHHHcChhhHHHHh
Confidence            68889999999888888777655                         8888888888876   7888888776554432


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCch
Q 008705          274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH  353 (557)
Q Consensus       274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  353 (557)
                      ..+..  ....|..+++.+++..+.......                               ........+.++...+.|
T Consensus        56 ~e~~L--w~~~y~~~ie~~r~~~k~~~~~~~-------------------------------~~~~~~~~~~l~~a~~~Y  102 (497)
T d1ya0a1          56 VEQDL--WNHAFKNQITTLQGQAKNRANPNR-------------------------------SEVQANLSLFLEAASGFY  102 (497)
T ss_dssp             HHHHH--HHHHTHHHHHHHHHHHSCSSCTTT-------------------------------THHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHhcccccCccH-------------------------------HHHHHHHHHHHHHHHHHH
Confidence            22221  223356677777776654332111                               001111234445556677


Q ss_pred             HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 008705          354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVF  433 (557)
Q Consensus       354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  433 (557)
                      +.|+..+++++.++|.+..++..+|..+...|++++|+..+++++..+|  ..++..+|.++...|++++|+.+|+++++
T Consensus       103 ~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~  180 (497)
T d1ya0a1         103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQ  180 (497)
T ss_dssp             HHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            7777777777777777777888888888888888888888887777665  35677788888888888888888888888


Q ss_pred             cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705          434 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG  489 (557)
Q Consensus       434 ~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  489 (557)
                      ++|+++.+++.+|.++..  .|++.+|+.+|.+++...|..+.++.+|+.++.+..
T Consensus       181 l~P~~~~~~~~Lg~~~~~--~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         181 LVPSNGQPYNQLAILASS--KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HCTTBSHHHHHHHHHHHH--TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HCCCchHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            888888888888888887  888888888888888888878888888877776543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.5e-15  Score=139.75  Aligned_cols=236  Identities=10%  Similarity=0.041  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-CCCCHHH
Q 008705          193 NLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGT-FSFSNYI  271 (557)
Q Consensus       193 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~  271 (557)
                      +.+..+|++|+...|.++..|...+...........           ..+......+..++|..+|+++++. .|.+..+
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l  101 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA-----------EKGDMNNAKLFSDEAANIYERAISTLLKKNMLL  101 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHH-----------HHHHHhhcccchHHHHHHHHHHHHHcCCCCHHH
Confidence            456778999999999999999887655433221110           0122334556678889999999874 6788888


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC
Q 008705          272 QAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG  351 (557)
Q Consensus       272 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  351 (557)
                      +...+......|+++.|..+|++++...|.+.                                 ..+|...+.+....|
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~---------------------------------~~~w~~~~~~~~~~~  148 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---------------------------------TLVYIQYMKFARRAE  148 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT---------------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh---------------------------------HHHHHHHHHHHHHcC
Confidence            89999999999999999999999988777542                                 235666777788888


Q ss_pred             chHHHHHHHHHHHhcCcCCHHHHHHHhHHHH-hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHH
Q 008705          352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYV-EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRK  430 (557)
Q Consensus       352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  430 (557)
                      +++.|...|+++++..|.....|...+.... ..|+.+.|...|++++..+|+++..|...+......|+++.|..+|++
T Consensus       149 ~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~  228 (308)
T d2onda1         149 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            8888999999998888888888888877643 457888888888888888888888888888888888888888888888


Q ss_pred             HHhcCCCCH----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          431 SVFLQPNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       431 a~~~~p~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      ++...|.++    .+|.........  .|+.+.+..+++++.+..|..
T Consensus       229 ai~~~~~~~~~~~~iw~~~~~fE~~--~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         229 VLTSGSLPPEKSGEIWARFLAFESN--IGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHSSSSCGGGCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCccc
Confidence            888776543    467777777777  888888888888888877755

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3e-16  Score=123.46  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             HHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc
Q 008705          375 TLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL  454 (557)
Q Consensus       375 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  454 (557)
                      ...|..++..|++++|+..|+++++.+|.++.+|..+|.+|..+|++++|+..|.++++++|+++.+|+.+|.++..  +
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~--~   84 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF--L   84 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH--c
Confidence            34555556666666666666666666666666666666666666666666666666666666666666666666666  6


Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705          455 HMLEEAIKCYRRAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       455 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~  484 (557)
                      |++++|+.+|+++++++|+++.++..++.+
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            666666666666666666665555555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.1e-15  Score=140.13  Aligned_cols=241  Identities=11%  Similarity=-0.025  Sum_probs=191.2

Q ss_pred             cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHH
Q 008705          284 EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA  363 (557)
Q Consensus       284 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  363 (557)
                      ..+.+..+|++++...|.+++.|..++..+...+..                    ....+......+..++|...|+++
T Consensus        31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~i~~ra   90 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL--------------------LAEKGDMNNAKLFSDEAANIYERA   90 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------HHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCch--------------------HHHHHHHhhcccchHHHHHHHHHH
Confidence            345667777787777777666665555433221110                    001112223345668899999999


Q ss_pred             Hhc-CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 008705          364 LKL-DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY-RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL  441 (557)
Q Consensus       364 l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  441 (557)
                      ++. .|.+...|...+..+...|+++.|...|++++...|.+. .+|..++......|+++.|...|+++++..|.+...
T Consensus        91 l~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~  170 (308)
T d2onda1          91 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV  170 (308)
T ss_dssp             HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Confidence            975 788888999999999999999999999999999999775 478999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-chHHHHH
Q 008705          442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP-NMVEALI  520 (557)
Q Consensus       442 ~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~  520 (557)
                      |...+..... ..|+.+.|..+|++++...|.++.++..++..+...|+++.|..+|+++++..    +..| ....+|.
T Consensus       171 ~~~~a~~e~~-~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~----~~~~~~~~~iw~  245 (308)
T d2onda1         171 YVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----SLPPEKSGEIWA  245 (308)
T ss_dssp             HHHHHHHHHH-TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS----SSCGGGCHHHHH
T ss_pred             HHHHHHHHHH-hccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCChHHHHHHHH
Confidence            9988876543 15889999999999999999999999999999999999999999999999821    1122 2345778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          521 FLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       521 ~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      .........|+.+.+...++++.+..|..
T Consensus       246 ~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         246 RFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            88888889999999999999998887654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-16  Score=123.79  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=106.2

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      +...|+.++..|++++|+.+|+++++.+|.++.+|..+|.++..+|++++|+..|.++++++|+++.+|+.+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      ++++|+..|+++++++|+++.++..++.+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.8e-16  Score=128.48  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      +...|+.++..|+|++|+.+|+++++++|++..+|..+|.++..+|++++|+..|+++++++|++..+|..+|.++..+|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            44456666666777777777777776666666666666666666666767777776666666666666666666666666


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      ++++|+..|++++.++|+++.++..++.+.
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            666666666666666666666666655554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-15  Score=131.53  Aligned_cols=148  Identities=15%  Similarity=0.090  Sum_probs=102.1

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  455 (557)
                      ..|..+...|++++|++.|++   +.|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|.++|.++..  +|
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~--~g   84 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ--TE   84 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh--hc
Confidence            456666667777777666654   3445566677777777777777777777777777777777777777777766  77


Q ss_pred             cHHHHHHHHHHHHhcCCC----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 008705          456 MLEEAIKCYRRAANCNDS----------------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL  519 (557)
Q Consensus       456 ~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (557)
                      ++++|+..|++++...+.                ...+++++|.++..+|++++|.+.+++++.       ..|+.    
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~-------~~~~~----  153 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS-------MKSEP----  153 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCSG----
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCc----
Confidence            777777777776654332                246788999999999999999999999988       55543    


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705          520 IFLATHCRAHGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       520 ~~la~~~~~~g~~~~A~~~~~~al~~~~  547 (557)
                              ..+..+.|+..+.+.....|
T Consensus       154 --------~~~~~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         154 --------RHSKIDKAMECVWKQKLYEP  173 (192)
T ss_dssp             --------GGGHHHHHHHHHHTTCCCCC
T ss_pred             --------chHHHHHHHHHHHhhhhCCc
Confidence                    23344666666666655544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=6.4e-16  Score=143.50  Aligned_cols=212  Identities=10%  Similarity=0.022  Sum_probs=163.8

Q ss_pred             HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHH
Q 008705          248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAH  327 (557)
Q Consensus       248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (557)
                      .++|++|.+.|.++              |.+|...|+|++|+..|.+++++.+...+              .        
T Consensus        30 ~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~--------------~--------   73 (290)
T d1qqea_          30 SYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGN--------------E--------   73 (290)
T ss_dssp             HHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTC--------------H--------
T ss_pred             cccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCC--------------C--------
Confidence            44677887777765              78899999999999999999986432111              1        


Q ss_pred             HHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHh-cCCchHHHHHHHHHHhh
Q 008705          328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVE-MKNTPAAIDAYRRAVDI  400 (557)
Q Consensus       328 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~  400 (557)
                            +....++..+|.+|...|++++|+.+|++++.+.+..      ..++..+|.++.. .|++++|+..|++++++
T Consensus        74 ------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l  147 (290)
T d1qqea_          74 ------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW  147 (290)
T ss_dssp             ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence                  1123567789999999999999999999999886544      4667888888855 69999999999999987


Q ss_pred             CCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705          401 NPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-------RLWIAMAQCYETEQLHMLEEAIKCYRRA  467 (557)
Q Consensus       401 ~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~~~~A~~~~~~a  467 (557)
                      .+..      ..++..+|.++..+|++++|+..|++++...+..+       ..+...|.++..  .|+++.|...++++
T Consensus       148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~d~~~A~~~~~~~  225 (290)
T d1qqea_         148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA--ATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHGG
T ss_pred             HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHH--hccHHHHHHHHHHH
Confidence            4432      55688999999999999999999999999887653       456788999999  99999999999999


Q ss_pred             HhcCCChHH-----HHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 008705          468 ANCNDSEAI-----ALNQLAKLHHA--LGRDEEAAFYYKKDLE  503 (557)
Q Consensus       468 l~~~p~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~al~  503 (557)
                      ++++|..+.     .+..+..++..  .+.+++|+..|+++.+
T Consensus       226 ~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            999886543     34555555544  3468888888877665

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.5e-15  Score=128.61  Aligned_cols=130  Identities=14%  Similarity=0.115  Sum_probs=118.2

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      ++..|..+...|++++|+..|.++   .|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            345799999999999999999864   56678899999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          420 MPLYALHYFRKSVFLQPND----------------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~----------------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      ++++|+..|++++...+.+                ..+++++|.++..  .|++++|++.+++++.+.|..
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~--~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK--KEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999999865543                4678999999999  999999999999999998874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-15  Score=126.77  Aligned_cols=123  Identities=17%  Similarity=0.152  Sum_probs=112.2

Q ss_pred             HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH
Q 008705          373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE  452 (557)
Q Consensus       373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  452 (557)
                      .+...|..++..|+|++|+..|+++++++|++..+|..+|.++..+|++++|+..|+++++++|+++.+|..+|.++.. 
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-   90 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-   90 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-
Confidence            3556799999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH--cCCHHHHHHH
Q 008705          453 QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA--LGRDEEAAFY  497 (557)
Q Consensus       453 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~  497 (557)
                       +|++++|+.+|++++.++|+++.++..++.+...  .+.+++|+..
T Consensus        91 -~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          91 -LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             9999999999999999999999998888877543  3445555544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.1e-15  Score=141.86  Aligned_cols=201  Identities=15%  Similarity=0.112  Sum_probs=163.4

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcC------cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------h
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLD------KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------Y  405 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~  405 (557)
                      +.+...|++|...|++++|+.+|.+++++.      +....++..+|.+|..+|++++|+..|++++++.+..      .
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            456668999999999999999999999873      2335678999999999999999999999999986655      5


Q ss_pred             HHHHHHHHHHHH-hCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH---
Q 008705          406 RAWYGLGQAYEM-MHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA---  475 (557)
Q Consensus       406 ~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---  475 (557)
                      .++..+|.+|.. .|++++|+.+|++++++.+..      ..++..+|.++..  .|++++|+..|++++...+..+   
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~--~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL--DGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH--cChHHHHHHHHHHHHHhCccchhhh
Confidence            678889998865 699999999999998874322      4568899999999  9999999999999999876653   


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchH-----HHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q 008705          476 ----IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV-----EALIFLATHCRA--HGRFEEAEVYCTRLLD  544 (557)
Q Consensus       476 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~la~~~~~--~g~~~~A~~~~~~al~  544 (557)
                          ..+...+.++...|+++.|...++++++       .+|...     .....+...+..  .+.+++|+..|.++.+
T Consensus       196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~-------~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQS-------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC-------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence                4677889999999999999999999987       454432     334455555554  3569999999999988


Q ss_pred             cCC
Q 008705          545 YTG  547 (557)
Q Consensus       545 ~~~  547 (557)
                      ++|
T Consensus       269 lD~  271 (290)
T d1qqea_         269 LDK  271 (290)
T ss_dssp             CCH
T ss_pred             cCH
Confidence            874

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=159.99  Aligned_cols=228  Identities=12%  Similarity=0.003  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705          253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT  332 (557)
Q Consensus       253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (557)
                      +|+++|++++.+.|+.+.++..+|.++...|++++|   |++++..+|....                            
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~----------------------------   52 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYAL----------------------------   52 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHH----------------------------
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHH----------------------------
Confidence            677888888888888777888888888888888765   7777777764221                            


Q ss_pred             CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc--CCHH-HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705          333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--NYLS-AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY  409 (557)
Q Consensus       333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  409 (557)
                            .....+...  ...+..++..+++..+...  +... .....+.+....+.|+.|+..+.+++.++|.+...+.
T Consensus        53 ------~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~  124 (497)
T d1ya0a1          53 ------DKKVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS  124 (497)
T ss_dssp             ------HHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             ------HHhHHHHHH--HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence                  111111111  1235667888888776542  2222 2233566677788899999999999999999999999


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705          410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG  489 (557)
Q Consensus       410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  489 (557)
                      .+|.++...|++++|+..+++++..+|  ..++..+|.++..  .|++++|+.+|++|+.++|+++.+++++|.++...|
T Consensus       125 ~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~--~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         125 QLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARY--RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             ------------------CCHHHHHHH--HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            999999999999999999999998765  4688999999999  999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705          490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG  530 (557)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  530 (557)
                      ++.+|+.+|.+++.       ..|..+.++.+|+..+.+..
T Consensus       201 ~~~~A~~~y~ral~-------~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         201 DHLTTIFYYCRSIA-------VKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             CHHHHHHHHHHHHS-------SSBCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHHhh
Confidence            99999999999998       78889999999998876543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.4e-15  Score=131.44  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=101.7

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY  415 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  415 (557)
                      .++.+...|+.++..|+|++|+.+|++++.++|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..+|++++|+..|++++.++|++...+...+..+..
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            999999999999999999887655444444444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.2e-15  Score=130.62  Aligned_cols=105  Identities=21%  Similarity=0.251  Sum_probs=99.0

Q ss_pred             CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      ....+...|..++..|++++|+..|++++.++|.++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+.+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705          450 ETEQLHMLEEAIKCYRRAANCNDSEAI  476 (557)
Q Consensus       450 ~~~~~~~~~~A~~~~~~al~~~p~~~~  476 (557)
                      ..  +|++++|+..|++++.++|++..
T Consensus        83 ~~--l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          83 LE--MESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HH--TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HH--CCCHHHHHHHHHHHHHhCcccHH
Confidence            99  99999999999999998775443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.55  E-value=9.1e-13  Score=120.18  Aligned_cols=235  Identities=20%  Similarity=0.222  Sum_probs=175.6

Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705          268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY  347 (557)
Q Consensus       268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  347 (557)
                      +|..++.+|..++..+++.+|+.+|+++.+..                                    ++.+++.+|.+|
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------------------------------------~~~A~~~Lg~~y   44 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------------------------------------ENSGCFNLGVLY   44 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------------------------------------CHHHHHHHHHHH
Confidence            46788899999999999999999999987643                                    356677788887


Q ss_pred             hh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH--
Q 008705          348 SL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM--  417 (557)
Q Consensus       348 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--  417 (557)
                      ..    ..++..|..+++.+...  .++.+...+|.++..    .++.+.|...++++....+  ..+...++..+..  
T Consensus        45 ~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~  120 (265)
T d1ouva_          45 YQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGK  120 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCS
T ss_pred             HcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCC
Confidence            76    56788888888887754  466777788877765    4567888888888887654  5556666666654  


Q ss_pred             --hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH--HhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cC
Q 008705          418 --MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET--EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LG  489 (557)
Q Consensus       418 --~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g  489 (557)
                        ......|...+.+...  +.+...+..+|.++..  ....+...+..+++.+.+  +.++.+.+++|.+|..    ..
T Consensus       121 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~  196 (265)
T d1ouva_         121 VVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATK  196 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCC
T ss_pred             cccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCccccc
Confidence              4456677777776654  4567788888888875  114567778888888775  4567888899988887    66


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCchhhhhh
Q 008705          490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDYTGPVSFTHLK  555 (557)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~a~~  555 (557)
                      ++++|+.+|+++.+       .  .++.+++.||.+|..    ..++++|.++|+++......+....+.
T Consensus       197 d~~~A~~~~~~aa~-------~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~  257 (265)
T d1ouva_         197 NFKEALARYSKACE-------L--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK  257 (265)
T ss_dssp             CHHHHHHHHHHHHH-------T--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             chhhhhhhHhhhhc-------c--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            89999999999887       2  457788899998886    448889999999998887665554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.8e-14  Score=116.87  Aligned_cols=137  Identities=12%  Similarity=0.069  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      +..+...|+.++..|++++|+..|++++...|.........          ......+         ...++.++|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~----------~~~~~~~---------~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE----------AQKAQAL---------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH----------HHHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH----------Hhhhchh---------HHHHHHHHHHHHH
Confidence            34455667777777777777777777776655432110000          0000000         1235677888888


Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA  494 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  494 (557)
                      .+|++++|+.++++++.++|+++.+++.+|.++..  +|++++|+.+|+++++++|+++.+...++.+....+...+.
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~--~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA--VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHH--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888  88888888888888888888888888888887766655544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-13  Score=116.07  Aligned_cols=134  Identities=13%  Similarity=0.141  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC
Q 008705          306 MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK  385 (557)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  385 (557)
                      +...|+.++..++++.+...+.+++...|........          .......+         ...++.++|.+|...|
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~----------~~~~~~~~---------~~~~~~nla~~y~k~~   76 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE----------EAQKAQAL---------RLASHLNLAMCHLKLQ   76 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH----------HHHHHHHH---------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH----------HHhhhchh---------HHHHHHHHHHHHHhhh
Confidence            4566888999999999999999999887755432111          11111111         1246778999999999


Q ss_pred             CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHH
Q 008705          386 NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA  460 (557)
Q Consensus       386 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A  460 (557)
                      ++++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.+...  .+...+.
T Consensus        77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~--~~~~~~~  149 (170)
T d1p5qa1          77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR--IRRQLAR  149 (170)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH--HHHHHHH
T ss_pred             hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998877  5555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.52  E-value=7e-14  Score=108.59  Aligned_cols=89  Identities=20%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH  455 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  455 (557)
                      .+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+|..+|.+|..  .|
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~--~g   98 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN--EH   98 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH--CC
Confidence            3344444444444444444444444444444444444444444444444444444444444444444444444444  44


Q ss_pred             cHHHHHHHHHH
Q 008705          456 MLEEAIKCYRR  466 (557)
Q Consensus       456 ~~~~A~~~~~~  466 (557)
                      ++++|++++++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            44444444444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.51  E-value=5.7e-14  Score=109.12  Aligned_cols=95  Identities=19%  Similarity=0.143  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705          338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM  417 (557)
Q Consensus       338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  417 (557)
                      +.++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++..+|+.+|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHH
Q 008705          418 MHMPLYALHYFRKSV  432 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~  432 (557)
                      +|++++|++.+++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=2.3e-13  Score=114.71  Aligned_cols=136  Identities=13%  Similarity=0.171  Sum_probs=103.1

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH  419 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  419 (557)
                      ....|..+...|++++|+..|.++++..+..                  .+.........++|....++.++|.++..+|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            4567888999999999999999998653221                  1111122333455666777888888888888


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA  495 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  495 (557)
                      ++++|+..|+++++++|+++.+|+.+|.++..  +|++++|+..|+++++++|++..+...++.+........++.
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~--l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQG--LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888  888888888888888888888888888888877766555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.49  E-value=2.7e-13  Score=111.86  Aligned_cols=132  Identities=15%  Similarity=0.095  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      +..+...|+.++..|+|.+|+..|++++...+....             ..+.........+     ...++.++|.+|.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~Nla~~~~   78 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-------------WDDQILLDKKKNI-----EISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-------------CCCHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-------------hhhHHHHHhhhhH-----HHHHHhhHHHHHH
Confidence            445566778888888888888888888776543210             0011111111111     1235667788888


Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      .+|++++|+.+++++++++|.+..+|+.+|.++..  +|++++|+.+|+++++++|++..+...++.+..++
T Consensus        79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~--lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY--FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhccccccchhhhhhHHhHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888887  88888888888888888888777777777665544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.48  E-value=6.2e-13  Score=111.71  Aligned_cols=146  Identities=12%  Similarity=0.071  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      ++.+...|+.++..|++.+|+..|++++...+.....             ...-..      ...+....++.++|.+|.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~-------------~~~~~~------~~~~~~~~~~~Nla~~~~   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-------------SEKESK------ASESFLLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------CHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc-------------chhhhh------hcchhHHHHHHhHHHHHH
Confidence            4556667777777777777777777776543321100             000000      000011345667888888


Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH-HH
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE-AA  495 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~  495 (557)
                      .+|++++|+..+++++.++|++..+++.+|.++..  +|++++|+.+|++++.++|+++.+...++.+....+.+.+ ..
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~--l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k  153 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL--MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR  153 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence            88888888888888888888888888888888888  8888888888888888888888888887777766654432 34


Q ss_pred             HHHHHHHH
Q 008705          496 FYYKKDLE  503 (557)
Q Consensus       496 ~~~~~al~  503 (557)
                      ..|.+..+
T Consensus       154 k~~~~~f~  161 (168)
T d1kt1a1         154 RTYANMFK  161 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            44444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=3.9e-13  Score=110.91  Aligned_cols=128  Identities=17%  Similarity=0.179  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC
Q 008705          306 MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK  385 (557)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  385 (557)
                      +...|+.++..+++..+...+..++...+.....             .+.........+     ...++.++|.+|..+|
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~~Nla~~~~~l~   81 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKNI-----EISCNLNLATCYNKNK   81 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHHH-----HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhhH-----HHHHHhhHHHHHHHhc
Confidence            4456788889999999999998888765543211             011111111111     1346788999999999


Q ss_pred             CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          386 NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       386 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ++++|+..++++++++|.+..+|+.+|.++..+|++++|+..|+++++++|++..+...++.+..+
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888887765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.47  E-value=9.2e-13  Score=110.64  Aligned_cols=143  Identities=13%  Similarity=0.155  Sum_probs=108.5

Q ss_pred             cHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc
Q 008705          305 DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM  384 (557)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  384 (557)
                      .+...|+.++..|++..+...+..++...+.......          .......         +....++.++|.+|..+
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~----------~~~~~~~---------~~~~~~~~Nla~~~~~l   77 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE----------KESKASE---------SFLLAAFLNLAMCYLKL   77 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH----------HHHHHHH---------HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch----------hhhhhcc---------hhHHHHHHhHHHHHHHh
Confidence            4556788889999999999888887765443221100          0011111         11244677899999999


Q ss_pred             CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH-HHHH
Q 008705          385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE-AIKC  463 (557)
Q Consensus       385 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~-A~~~  463 (557)
                      |++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|+++.++..++.+...  .+.+.+ ..+.
T Consensus        78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~--~~~~~e~~kk~  155 (168)
T d1kt1a1          78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK--AKEHNERDRRT  155 (168)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988877  665543 3444


Q ss_pred             HHHHH
Q 008705          464 YRRAA  468 (557)
Q Consensus       464 ~~~al  468 (557)
                      |.+.+
T Consensus       156 ~~~~f  160 (168)
T d1kt1a1         156 YANMF  160 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.47  E-value=7.8e-12  Score=113.82  Aligned_cols=229  Identities=17%  Similarity=0.184  Sum_probs=156.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH----Hhh
Q 008705          175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE----LRM  250 (557)
Q Consensus       175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~----~~~  250 (557)
                      ||..++.+|..+...|++.+|+++|+++.+.  .+..++..|                         |.+|..    ..+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L-------------------------g~~y~~G~~~~~d   53 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNL-------------------------GVLYYQGQGVEKN   53 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHH-------------------------HHHHHHTSSSCCC
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHH-------------------------HHHHHcCCCcchh
Confidence            6889999999999999999999999999775  467777555                         888776    567


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705          251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA  326 (557)
Q Consensus       251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (557)
                      +..|...+..+...  .++.+...+|.++..    ..+.+.|...++.+....+.                         
T Consensus        54 ~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-------------------------  106 (265)
T d1ouva_          54 LKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-------------------------  106 (265)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-------------------------
T ss_pred             HHHHHHhhcccccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh-------------------------
Confidence            88899999887653  467777888877764    46788899999988876542                         


Q ss_pred             HHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHH
Q 008705          327 HRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAV  398 (557)
Q Consensus       327 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al  398 (557)
                                 .+...++..+..    ......|...+.+...  +.+..++..+|..+..    ..+...+...++.+.
T Consensus       107 -----------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~  173 (265)
T d1ouva_         107 -----------EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKAC  173 (265)
T ss_dssp             -----------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             -----------hHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhccc
Confidence                       223333433332    3345556666655443  3455666777777665    344556666666665


Q ss_pred             hhCCCChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCC
Q 008705          399 DINPRDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       399 ~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p  472 (557)
                      +  +.++.+++.+|.+|..    ..++++|+.+|+++.+.  .++.+++.+|.+|..+.  ..++++|+++|+++.....
T Consensus       174 ~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         174 D--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             H--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             c--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            4  3466777777777765    55677777777777665  35677777777775410  1266777777777776654


Q ss_pred             Ch
Q 008705          473 SE  474 (557)
Q Consensus       473 ~~  474 (557)
                      ..
T Consensus       250 ~~  251 (265)
T d1ouva_         250 KG  251 (265)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.6e-13  Score=107.68  Aligned_cols=109  Identities=11%  Similarity=-0.040  Sum_probs=73.6

Q ss_pred             HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC---CchHHHHHHHHHHhhCCCC--hHHHHHHHHHHHH
Q 008705          343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK---NTPAAIDAYRRAVDINPRD--YRAWYGLGQAYEM  417 (557)
Q Consensus       343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~  417 (557)
                      +++.+...+++++|.+.|++++.++|.++.+++++|.+++..+   ++++|+..|++++..+|.+  ..+|+++|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            4555666677777777777777777777777777777776544   3345777777777666544  3466777777777


Q ss_pred             hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      +|++++|+.+|+++++++|++..+...++.+..+
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            7777777777777777777777766666655443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=2.9e-13  Score=114.02  Aligned_cols=111  Identities=19%  Similarity=0.157  Sum_probs=94.3

Q ss_pred             HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705          374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ  453 (557)
Q Consensus       374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  453 (557)
                      ....|..+...|++++|+..|++++...+..                  .+.....+...++|....++.++|.++..  
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~--   89 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLK--   89 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHh--
Confidence            4567888999999999999999998753211                  12222234445667788899999999999  


Q ss_pred             cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705          454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER  504 (557)
Q Consensus       454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (557)
                      +|++++|+..|.++++++|+++.+++.+|.+|..+|++++|+..|+++++.
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999995

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=1.3e-13  Score=112.37  Aligned_cols=103  Identities=18%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC----------chHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705          347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN----------TPAAIDAYRRAVDINPRDYRAWYGLGQAYE  416 (557)
Q Consensus       347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  416 (557)
                      +.+.+.+++|+..|+++++++|+++.+++.+|.++...++          +++|+..|+++++++|+++.+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            4556778888888888888888888888888888875443          456666666666666666666666666665


Q ss_pred             HhCC-----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705          417 MMHM-----------PLYALHYFRKSVFLQPNDSRLWIAMAQCY  449 (557)
Q Consensus       417 ~~~~-----------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  449 (557)
                      .+|+           +++|+.+|+++++++|++...+..++.+.
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            5543           34444444444444444444444444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.9e-14  Score=109.16  Aligned_cols=111  Identities=9%  Similarity=0.005  Sum_probs=98.9

Q ss_pred             HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC---ChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHh
Q 008705          376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH---MPLYALHYFRKSVFLQPND--SRLWIAMAQCYE  450 (557)
Q Consensus       376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~  450 (557)
                      .++..+...+++++|.+.|++++.++|.++.+++++|.++...+   ++++|+..|++++..+|.+  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            46677889999999999999999999999999999999998644   5567999999999988765  458999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705          451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL  488 (557)
Q Consensus       451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  488 (557)
                      .  .|++++|+++|+++++++|++..+...++.+..+.
T Consensus        84 ~--~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 R--LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             H--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             H--HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9  99999999999999999999999988888776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=1.9e-13  Score=111.39  Aligned_cols=110  Identities=14%  Similarity=0.170  Sum_probs=96.8

Q ss_pred             HHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705          379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM----------HMPLYALHYFRKSVFLQPNDSRLWIAMAQC  448 (557)
Q Consensus       379 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  448 (557)
                      ..+.+++.+++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456778899999999999999999999999999999754          556899999999999999999999999999


Q ss_pred             HhHHhcC-----------cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705          449 YETEQLH-----------MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR  490 (557)
Q Consensus       449 ~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  490 (557)
                      |..  .|           .+++|+++|++++.++|++..++..|+.+....+.
T Consensus        85 y~~--~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~  135 (145)
T d1zu2a1          85 YTS--FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  135 (145)
T ss_dssp             HHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             HHH--cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            987  65           47999999999999999999999888887644333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-12  Score=103.76  Aligned_cols=97  Identities=18%  Similarity=0.227  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH-------HHHHHH
Q 008705          340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR-------AWYGLG  412 (557)
Q Consensus       340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~  412 (557)
                      +..+|+.++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|++..       ++..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            3456666666666666666666666666666666666666666666666666666666666665533       333444


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcCC
Q 008705          413 QAYEMMHMPLYALHYFRKSVFLQP  436 (557)
Q Consensus       413 ~~~~~~~~~~~A~~~~~~a~~~~p  436 (557)
                      .++..++++++|+.+|++++..++
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCC
Confidence            444445555555555555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.5e-12  Score=102.32  Aligned_cols=107  Identities=10%  Similarity=0.094  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705          441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI  520 (557)
Q Consensus       441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (557)
                      .+..+|..++.  .|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++..+......+....++.
T Consensus         6 ~~k~~G~~~~~--~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           6 KEKELGNDAYK--KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45577888888  8888888888888888888888888888888888888888888888888743332222334456788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705          521 FLATHCRAHGRFEEAEVYCTRLLDYTGPV  549 (557)
Q Consensus       521 ~la~~~~~~g~~~~A~~~~~~al~~~~~~  549 (557)
                      .+|.++...+++++|+.+|++++..++..
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            88899999999999999999998876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.20  E-value=5.6e-11  Score=98.14  Aligned_cols=116  Identities=18%  Similarity=0.108  Sum_probs=81.4

Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------
Q 008705          412 GQAYEMMHMPLYALHYFRKSVFLQPND------------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------  473 (557)
Q Consensus       412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~------------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------  473 (557)
                      |..++..|+|++|+..|++++++.|+.            ..+|.++|.+|..  +|++++|+..+++++.+.|.      
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~--lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG--LRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH--cCccchhhHhhhhhhhcccccccccc
Confidence            445555566666666666665554432            3467788888888  88888888888888875331      


Q ss_pred             -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc
Q 008705          474 -----EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH  529 (557)
Q Consensus       474 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~  529 (557)
                           ...+++++|.+|..+|++++|+..|+++++..+......+........++..+.++
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence                 23478899999999999999999999999976655555555555555555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.8e-11  Score=87.44  Aligned_cols=81  Identities=12%  Similarity=0.110  Sum_probs=54.7

Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC-------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY-------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW  408 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  408 (557)
                      +++.++.+|.+++..|++.+|+.+|++|+++.|.+       ..++..+|.++.+.|++++|+..|+++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            34566777777777777777777777777664432       45566667777777777777777777777777666666


Q ss_pred             HHHHHHHH
Q 008705          409 YGLGQAYE  416 (557)
Q Consensus       409 ~~l~~~~~  416 (557)
                      .+++.+..
T Consensus        84 ~Nl~~~~~   91 (95)
T d1tjca_          84 GNLKYFEY   91 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-10  Score=85.19  Aligned_cols=75  Identities=8%  Similarity=-0.010  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPND-------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ  480 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  480 (557)
                      ++.+|.++...|++.+|+.+|++++++.|.+       ..++.++|.++..  .|++++|+..|+++++++|+++.++.+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~--~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ--QGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh--cCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            3444444444444444444444444432221       3445555555555  555555555555555555555555555


Q ss_pred             HHHH
Q 008705          481 LAKL  484 (557)
Q Consensus       481 la~~  484 (557)
                      ++.+
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.08  E-value=3.8e-10  Score=92.96  Aligned_cols=107  Identities=21%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             HHHHHH--HHHHhHHhcCcHHHHHHHHHHHHhcCCCh------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705          440 RLWIAM--AQCYETEQLHMLEEAIKCYRRAANCNDSE------------AIALNQLAKLHHALGRDEEAAFYYKKDLERM  505 (557)
Q Consensus       440 ~~~~~l--~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (557)
                      .++..+  |..+..  .|+|++|+..|++++++.|+.            ..++.++|.+|..+|++++|+..+++++...
T Consensus         8 ~a~~~l~~g~~~~~--~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           8 GAYLALSDAQRQLV--AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            344444  777778  999999999999999987653            3578999999999999999999999999965


Q ss_pred             HhhhcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705          506 EAEEREGP----NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP  548 (557)
Q Consensus       506 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  548 (557)
                      .......+    ....+++++|.+|..+|++++|+..|++++++.|.
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            54433333    34567899999999999999999999999998643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.97  E-value=4.5e-10  Score=100.52  Aligned_cols=125  Identities=8%  Similarity=-0.047  Sum_probs=61.9

Q ss_pred             hhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHH
Q 008705          348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY  427 (557)
Q Consensus       348 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  427 (557)
                      ...|++++|+..|+++++.+|++..++..+|.+++..|++++|+..|+++++++|++..++..++.++...+..+++...
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555444444433332


Q ss_pred             HHHHHhc-CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705          428 FRKSVFL-QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE  474 (557)
Q Consensus       428 ~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~  474 (557)
                      +.+.... .|.....+...+.++..  .|++++|...++++.+..|..
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~--~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMV--SQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCC
Confidence            2222111 22223334444444544  555555555555555554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.97  E-value=3.8e-10  Score=101.01  Aligned_cols=122  Identities=11%  Similarity=-0.018  Sum_probs=56.1

Q ss_pred             HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 008705          417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF  496 (557)
Q Consensus       417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  496 (557)
                      ..|++++|+..|+++++.+|+++..+..+|.++..  .|++++|+..|+++++++|++..++..++.++...+..+++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~--~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI--DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            34455555555555555555555555555555555  5555555555555555555555444444444443333333222


Q ss_pred             HHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705          497 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT  546 (557)
Q Consensus       497 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  546 (557)
                      .+.....      ...|.....+...+..+...|++++|...+.++.+..
T Consensus        86 ~~~~~~~------~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          86 GAATAKV------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             SCCCEEC------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             Hhhhhhc------ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            1111110      0123334444444555555555555555555555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=3.9e-09  Score=88.43  Aligned_cols=129  Identities=11%  Similarity=-0.125  Sum_probs=90.5

Q ss_pred             HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705          372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET  451 (557)
Q Consensus       372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  451 (557)
                      ..+...|......|++++|+..|.+++.+.+.+.......+       .+     .......+.+....++..++.++..
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~-------~w-----~~~~r~~l~~~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDF-------QF-----VEPFATALVEDKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTS-------TT-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcch-------HH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777777777777777777777665533221111       00     1111222333445678888888888


Q ss_pred             HhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc
Q 008705          452 EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN  514 (557)
Q Consensus       452 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (557)
                        .|++++|+.++++++..+|.+..++..++.++...|++.+|+..|+++...+....+..|.
T Consensus        80 --~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          80 --CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             --TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             --CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence              8999999999999999899888889999999999999999999988888877666666665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=1.1e-08  Score=85.56  Aligned_cols=126  Identities=13%  Similarity=-0.074  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705          405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL  484 (557)
Q Consensus       405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  484 (557)
                      +..+...|......|++++|+..|.+++.+.+.+.......         +.+     .......+.+....++..++.+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~---------~~w-----~~~~r~~l~~~~~~a~~~la~~   76 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD---------FQF-----VEPFATALVEDKVLAHTAKAEA   76 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT---------STT-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc---------hHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999987764321111         111     1111222334456788999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------hccCCCchh
Q 008705          485 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL-------LDYTGPVSF  551 (557)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~~~~~~  551 (557)
                      +...|++++|+.+++++++       .+|.+..+|..++.++...|++.+|+..|+++       +.+.|....
T Consensus        77 ~~~~g~~~~Al~~~~~al~-------~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTF-------EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHCCCchHHHHHHHHHHH-------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            9999999999999999999       79999999999999999999999999999998       566666543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=1.6e-06  Score=68.34  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHH
Q 008705          420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEAA  495 (557)
Q Consensus       420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~  495 (557)
                      ++++|+.+|+++.+..  ++.+...++.  ..  ..++++|+.+|+++.+.  .++.+.+.||.+|..    ..++++|+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~--~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NS--QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CT--TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--cc--ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            4555666666655543  3333444442  22  45566666666666553  345666666666654    34566677


Q ss_pred             HHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 008705          496 FYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDYTG  547 (557)
Q Consensus       496 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  547 (557)
                      .+|+++.+         ..++.+.+.||.+|..    ..+..+|..+|+++.+...
T Consensus        80 ~~~~~aa~---------~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACG---------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhc---------cCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            77776665         2345566666766665    3466777777777666543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=1.7e-05  Score=59.51  Aligned_cols=73  Identities=5%  Similarity=-0.123  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHHhhh---CchHHHHHHHHHHHhcCcCCH-HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705          337 PESCCIIGNYYSLK---GQHEKSVVYFRRALKLDKNYL-SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY  409 (557)
Q Consensus       337 ~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  409 (557)
                      +++.+..|.++...   .+.++|+..++.+++.+|... +.++.+|..|.++|++++|..+++++++++|++..+..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            34445555555432   233455555555555554432 45555555555555555555555555555555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=2.6e-05  Score=61.06  Aligned_cols=114  Identities=17%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hCChHHHHH
Q 008705          351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM----MHMPLYALH  426 (557)
Q Consensus       351 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~  426 (557)
                      .++++|+.+|+++.+..  ++.+.+.++.  ....+.++|+..|+++.+.  .++.+.+.||.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            36677777777776653  3445555543  2345666777777776654  356666677776654    345666777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCC
Q 008705          427 YFRKSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p  472 (557)
                      +|+++.+.  .++.+.+.+|.+|..+.  ..++.+|+.+|+++.+...
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            77776654  35666666666665411  2356667777766665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=1.4e-05  Score=60.08  Aligned_cols=79  Identities=6%  Similarity=-0.037  Sum_probs=63.1

Q ss_pred             HHHHHHHhHHHHhcCC---chHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705          371 LSAWTLMGHEYVEMKN---TPAAIDAYRRAVDINPRDY-RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA  446 (557)
Q Consensus       371 ~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  446 (557)
                      ..+.+..|.++....+   .++++..++.++..+|.+. +.++.||..|.++|++++|..+++++++++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            5677888888886654   5688899999888888664 68889999999999999999999999999999887765554


Q ss_pred             HHH
Q 008705          447 QCY  449 (557)
Q Consensus       447 ~~~  449 (557)
                      .+.
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=0.0042  Score=59.29  Aligned_cols=416  Identities=7%  Similarity=-0.123  Sum_probs=186.2

Q ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHhhhcC-CchhhHHHHHHHHhh--cccchHHHHHhhCCCCCchhhchhHHHHHH---
Q 008705           90 DSDFYLLAKSYFDCREYRRAAHVLRDQTG-RRSVFLRCYALYLAG--EKRKEEEMIELEGPLGKSNAVNRELISLER---  163 (557)
Q Consensus        90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~-~~~~~l~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---  163 (557)
                      .-..|..|...+..|++.++........+ +-..++.+  ..+..  ......++..++.........+.--...+.   
T Consensus         6 ~r~~y~~a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~--~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~   83 (450)
T d1qsaa1           6 QRSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEY--RQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELA   83 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHH--HHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhhhcCCCCHHHHHH--HHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence            46789999999999999999999888854 22222222  11211  122333333333222222111110011111   


Q ss_pred             ------HHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHH
Q 008705          164 ------ELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMK  237 (557)
Q Consensus       164 ------~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~  237 (557)
                            .+.......|.+...-+..+.+....|+..+|...+..+....+..+.....+.......    ....+..+  
T Consensus        84 ~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~----~~lt~~~~--  157 (450)
T d1qsaa1          84 RREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRAS----GKQDPLAY--  157 (450)
T ss_dssp             HTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHT----TCSCHHHH--
T ss_pred             hccCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----CCCCHHHH--
Confidence                  122223345666666666777777777777777776666655444433322221111000    00011111  


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH--HHHHHHh
Q 008705          238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM--YSNVLYA  315 (557)
Q Consensus       238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--~~~~~~~  315 (557)
                       +-........|++..|...+..+   .++..........+...-....       ......+.+......  .+..-..
T Consensus       158 -~~R~~~~l~~~~~~~a~~l~~~l---~~~~~~~~~a~~~l~~~p~~~~-------~~~~~~~~~~~~~~~~~~~l~rla  226 (450)
T d1qsaa1         158 -LERIRLAMKAGNTGLVTVLAGQM---PADYQTIASAIISLANNPNTVL-------TFARTTGATDFTRQMAAVAFASVA  226 (450)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHHHHHHHHCGGGHH-------HHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCChhhHHHHHhhC---ChhHHHHHHHHHHHHhChHhHH-------HHHhcCCCChhhhHHHHHHHHHHh
Confidence             11244445555555555544332   1111111111111111111111       111112222111111  1111112


Q ss_pred             ccchhHHHHHHHHHHhhCCCChhHHHHH----HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHH
Q 008705          316 KECFSALSYLAHRVFMTDKYRPESCCII----GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI  391 (557)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l----a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  391 (557)
                      ..+...+..+........+..+..+...    +......+..+.+...+........+.......++ .....+++..+.
T Consensus       227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~  305 (450)
T d1qsaa1         227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLN  305 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHH
T ss_pred             ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHH
Confidence            2344444444444444333333322222    22222334455555555544443333222222222 233445555555


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705          392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN  471 (557)
Q Consensus       392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~  471 (557)
                      ..++.............|-+|..+...|+.+.|..+|..+... + +  .|-.++.-.    +|..-.   .-.......
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~-~--fYG~LAa~~----Lg~~~~---~~~~~~~~~  374 (450)
T d1qsaa1         306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-R-G--FYPMVAAQR----IGEEYE---LKIDKAPQN  374 (450)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-C-S--HHHHHHHHH----TTCCCC---CCCCCCCSC
T ss_pred             HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-C-C--hHHHHHHHH----cCCCCC---CCcCCCCcc
Confidence            5554432222223444555666666666666666666655432 2 1  222222111    221000   000000000


Q ss_pred             CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705          472 DSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY  545 (557)
Q Consensus       472 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  545 (557)
                      +..   ...-...+..+...|+...|...+..++.       ..  ++.-...+|.+..+.|.++.|+....++-..
T Consensus       375 ~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~-------~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~  442 (450)
T d1qsaa1         375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-------SK--SKTEQAQLARYAFNNQWWDLSVQATIAGKLW  442 (450)
T ss_dssp             CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCT
T ss_pred             HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh-------CC--CHHHHHHHHHHHHHCCChhHHHHHHHHHHcc
Confidence            011   11234567888999999999999988775       22  3456678899999999999999988887543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=0.0039  Score=59.60  Aligned_cols=124  Identities=14%  Similarity=-0.012  Sum_probs=85.9

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH----HHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705          411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM----AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH  486 (557)
Q Consensus       411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l----~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  486 (557)
                      .+..-....+.+.|...+.......+.....+...    +..+..  .+..+.|...+........+.......++. ..
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al  296 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMRSQSTSLIERRVRM-AL  296 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHH--cCchHHHHHHHHhhcccccchHHHHHHHHH-HH
Confidence            33344445678888888888776665555443333    333334  566788888888777666555544444554 45


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705          487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD  544 (557)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  544 (557)
                      ..+++..+...+.....       .....+...+++|..+...|+.++|..+|..+..
T Consensus       297 ~~~~~~~~~~~~~~l~~-------~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         297 GTGDRRGLNTWLARLPM-------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHTCHHHHHHHHHHSCT-------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HcCChHHHHHHHHhcCc-------ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            66899988888765433       3345578899999999999999999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.68  E-value=0.0093  Score=53.75  Aligned_cols=262  Identities=11%  Similarity=0.044  Sum_probs=151.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705          241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS  320 (557)
Q Consensus       241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  320 (557)
                      .|..+.+.|.|+.|...|...-.        +-.++.++.+.+++..|.+.+.+.     +..+.|..+...+.......
T Consensus        20 i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             ---------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHH
Confidence            48888899999999999986522        445667888999999998888765     33445555555555443333


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh-
Q 008705          321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD-  399 (557)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-  399 (557)
                      .+.    .+.......++-...+...|...|.+++.+.+++.++...+.+...++.++.+|.+.+ .++-++.++..-. 
T Consensus        87 la~----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~  161 (336)
T d1b89a_          87 LAQ----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSR  161 (336)
T ss_dssp             HHH----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTT
T ss_pred             HHH----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcccc
Confidence            221    1111122355555667788889999999999999999888888889999999887654 4444444443211 


Q ss_pred             hCCC-------ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705          400 INPR-------DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND  472 (557)
Q Consensus       400 ~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p  472 (557)
                      .++.       ....|-.+..+|.+.|+++.|+...-.    .|.+..-....-.++.+  ..+.+..-+...-.++..|
T Consensus       162 y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~f~e~~~k--~~N~e~~~~~i~~yL~~~p  235 (336)
T d1b89a_         162 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKP  235 (336)
T ss_dssp             SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHHHHHHHHH--CSSTHHHHHHHHHHHHHCG
T ss_pred             CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHHHHHHHHc--cCChHHHHHHHHHHHHcCH
Confidence            1111       122355677778888888887765533    12211112222233334  4444443333333333344


Q ss_pred             ChHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHH
Q 008705          473 SEAIA----------LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA  535 (557)
Q Consensus       473 ~~~~~----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  535 (557)
                      ....-          ...+.....+.++..-...+++...+         .+...+...++.+|...++++.=
T Consensus       236 ~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~---------~n~~~vn~al~~lyie~~d~~~l  299 (336)
T d1b89a_         236 LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---------HNNKSVNESLNNLFITEEDYQAL  299 (336)
T ss_dssp             GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT---------TCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH---------cChHHHHHHHHHHHhCcchhHHH
Confidence            32110          12244455666676666666666443         23456889999999999997553

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.91  E-value=0.13  Score=45.91  Aligned_cols=267  Identities=12%  Similarity=0.036  Sum_probs=140.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705          176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL  255 (557)
Q Consensus       176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~  255 (557)
                      ..-.-..|..+.+.|.|+.|...|...-.     +   ..                         +..++...++++.|.
T Consensus        14 ~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~---~r-------------------------l~~~~v~l~~~~~av   60 (336)
T d1b89a_          14 NAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----F---GR-------------------------LASTLVHLGEYQAAV   60 (336)
T ss_dssp             ---------------CTTTHHHHHHHTTC-----H---HH-------------------------HHHHHHTTTCHHHHH
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----H---HH-------------------------HHHHHHhhccHHHHH
Confidence            33455677788888899888888875422     1   11                         155667777888887


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCC
Q 008705          256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKY  335 (557)
Q Consensus       256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (557)
                      +.+.+.     +++.+|......+....+..-|..+ ...+.   .+++........+...+.++.+..++...+...+.
T Consensus        61 d~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~~~---~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~  131 (336)
T d1b89a_          61 DGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLERA  131 (336)
T ss_dssp             HHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHHhh---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCcc
Confidence            777765     4566777777777766665443211 11111   12223334455566677778888888877777777


Q ss_pred             ChhHHHHHHHHHhhhCchHHHHHHHHHH-HhcCcCC-------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705          336 RPESCCIIGNYYSLKGQHEKSVVYFRRA-LKLDKNY-------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA  407 (557)
Q Consensus       336 ~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  407 (557)
                      ....+..++.+|.+.+ .++-.++++.. ...++..       ...|-.+..+|.+.|+++.|+...-.    .|.+..-
T Consensus       132 ~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~  206 (336)
T d1b89a_         132 HMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWK  206 (336)
T ss_dssp             CHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCC
T ss_pred             chHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhh
Confidence            7777778888776654 45555555442 1112111       11244566777788888877765432    2222111


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH
Q 008705          408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW----------IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA  477 (557)
Q Consensus       408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----------~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  477 (557)
                      ....-.++.+..+.+..-....-.++..|....-+          ..+.....+  .++..-...+++.....  ++..+
T Consensus       207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k--~~~l~li~p~Le~v~~~--n~~~v  282 (336)
T d1b89a_         207 EGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK--VKQLPLVKPYLRSVQNH--NNKSV  282 (336)
T ss_dssp             HHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHH--TTCTTTTHHHHHHHHTT--CCHHH
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHh--cCCcHHHHHHHHHHHHc--ChHHH
Confidence            22223334444554444444433344444322111          122233344  55555556666655443  34578


Q ss_pred             HHHHHHHHHHcCCHHH
Q 008705          478 LNQLAKLHHALGRDEE  493 (557)
Q Consensus       478 ~~~la~~~~~~g~~~~  493 (557)
                      ...++.+|...++++.
T Consensus       283 n~al~~lyie~~d~~~  298 (336)
T d1b89a_         283 NESLNNLFITEEDYQA  298 (336)
T ss_dssp             HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCcchhHH
Confidence            8999999999999754