Citrus Sinensis ID: 008718

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEccccccccccccccHHHHHHHcccccEEcccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccHHcccc
cccccccccccccHHHHHHHHHHHHHHHHHHHHcccHEHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEccccccccEEccccccHHHHcccccEEEEccccccEEEcccccccccccEEEEEEccEEcccccccccccHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccccHHHHHHHcccccccccccccccccccEEEEEcc
mescdcidtqwppdeLLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTlgleecalwmpsrtglnlELSYTLNnqiqigssvpinlpivtdvfnsaqamrlpyncplARIRLLvgryvppdivAVRVpllhlsnfqindwpelpakSYAVMVLMLptdggrkwrdHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLlletdltpeQRVMIETVLKSSNLLTTLVDdvldlsrledgsleldngpfNLQIVLREVIKLIKPVASCKKLSMTlimapelptyavgdeKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrppefypvstdghFYLRVQvndsgcgvppqdipLLFTKFAqsrgsscqtpraglglaicrr
mescdcidtqwppDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRadeldremgliltqeetgrhvrMLTHEirstldrhtiLKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVlkssnlltTLVDDVLDLSRLEDgsleldngpFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAqsrgsscqtpraglglaicrr
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNllttlvddvldlSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE**************************IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ********************
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADE********************LTH*IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAK*************PVSTDGHFYLRVQVNDSGC*****************************GLAICRR
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ*********RAGLGLAICRR
**SCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKP******RPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDxxxxxxxxxxxxxxxxxxxxxxxxxIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query556 2.2.26 [Sep-21-2011]
Q38846613 Ethylene response sensor yes no 1.0 0.907 0.755 0.0
O82436 740 Ethylene receptor 1 OS=Cu N/A no 1.0 0.751 0.735 0.0
O81122 741 Ethylene receptor OS=Malu N/A no 1.0 0.750 0.727 0.0
Q9ZWL6 738 Ethylene receptor OS=Pass N/A no 1.0 0.753 0.732 0.0
Q9M7M1 738 Ethylene receptor OS=Prun N/A no 1.0 0.753 0.728 0.0
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 1.0 0.751 0.733 0.0
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 1.0 0.750 0.728 0.0
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 1.0 0.751 0.712 0.0
Q41342 754 Ethylene receptor 1 OS=So N/A no 0.998 0.736 0.709 0.0
P49333 738 Ethylene receptor 1 OS=Ar no no 0.992 0.747 0.709 0.0
>sp|Q38846|ERS1_ARATH Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/557 (75%), Positives = 488/557 (87%), Gaps = 1/557 (0%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct: 1   MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct: 61  FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct: 121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct: 181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct: 241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct: 301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           AII+LSSLLLET+L+PEQRVMIET+LKSSNL+ TL+ DVLDLSRLEDGSL L+N PF+LQ
Sbjct: 361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
            +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct: 421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-G 539
           SIIAS+ KPESL +   PEF+PV +D HFYL VQV D+GCG+  QDIPLLFTKF Q R G
Sbjct: 481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQVKDTGCGIHTQDIPLLFTKFVQPRTG 540

Query: 540 SSCQTPRAGLGLAICRR 556
           +       GLGLA+C+R
Sbjct: 541 TQRNHSGGGLGLALCKR 557
Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWL6|ETR1_PASED Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query556
283520948634 ethylene response sensor 1 [Citrus hybri 1.0 0.876 1.0 0.0
4092526634 putative ethylene receptor [Citrus sinen 1.0 0.876 0.991 0.0
224068380636 ethylene receptor 1 [Populus trichocarpa 1.0 0.874 0.836 0.0
237769861636 ethylene receptor [Dimocarpus longan] gi 1.0 0.874 0.815 0.0
225437449636 PREDICTED: ethylene receptor 2 [Vitis vi 1.0 0.874 0.816 0.0
163639425629 ethylene receptor ERS1b [Actinidia delic 1.0 0.883 0.806 0.0
82471111632 ERS type ethylene receptor [Ziziphus juj 1.0 0.879 0.825 0.0
255564264636 ethylene receptor, putative [Ricinus com 1.0 0.874 0.818 0.0
11935116634 ethylene receptor [Carica papaya] 0.996 0.873 0.820 0.0
44885996633 ethylene receptor [Diospyros kaki] 1.0 0.878 0.808 0.0
>gi|283520948|gb|ADB25216.1| ethylene response sensor 1 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/556 (100%), Positives = 556/556 (100%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS
Sbjct: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL
Sbjct: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA
Sbjct: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG
Sbjct: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA
Sbjct: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH
Sbjct: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ
Sbjct: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420

Query: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
           IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV
Sbjct: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480

Query: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540
           SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS
Sbjct: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540

Query: 541 SCQTPRAGLGLAICRR 556
           SCQTPRAGLGLAICRR
Sbjct: 541 SCQTPRAGLGLAICRR 556

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4092526|gb|AAC99435.1| putative ethylene receptor [Citrus sinensis] Back     alignment and taxonomy information
>gi|224068380|ref|XP_002302732.1| ethylene receptor 1 [Populus trichocarpa] gi|222844458|gb|EEE82005.1| ethylene receptor 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|237769861|gb|ACL81481.3| ethylene receptor [Dimocarpus longan] gi|264683475|gb|ACY72568.1| ethylene receptor [Dimocarpus longan] Back     alignment and taxonomy information
>gi|225437449|ref|XP_002272649.1| PREDICTED: ethylene receptor 2 [Vitis vinifera] gi|297743925|emb|CBI36895.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|163639425|gb|ABY28263.1| ethylene receptor ERS1b [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|82471111|gb|ABB77561.1| ERS type ethylene receptor [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|255564264|ref|XP_002523129.1| ethylene receptor, putative [Ricinus communis] gi|223537691|gb|EEF39314.1| ethylene receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|11935116|gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya] Back     alignment and taxonomy information
>gi|44885996|dbj|BAD11810.1| ethylene receptor [Diospyros kaki] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query556
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 1.0 0.907 0.741 2e-221
UNIPROTKB|Q41341635 Never-ripe "Ethylene receptor" 0.998 0.874 0.730 2.2e-215
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.998 0.736 0.693 6.2e-204
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.992 0.747 0.692 4.4e-203
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.893 0.642 0.410 4e-90
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.989 0.718 0.357 1.3e-82
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.830 0.716 0.370 2.5e-74
UNIPROTKB|Q4K894 917 gacS "Sensor protein GacS" [Ps 0.408 0.247 0.340 2.2e-27
UNIPROTKB|P0AEC5 918 barA [Escherichia coli K-12 (t 0.404 0.245 0.355 4.9e-27
TIGR_CMR|GSU_2314 1025 GSU_2314 "sensory box histidin 0.442 0.24 0.327 1.7e-26
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2138 (757.7 bits), Expect = 2.0e-221, P = 2.0e-221
 Identities = 413/557 (74%), Positives = 478/557 (85%)

Query:     1 MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
             MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct:     1 MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query:    61 FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
             FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct:    61 FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query:   121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
             FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct:   121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query:   181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
             LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct:   181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query:   241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
             RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct:   241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query:   301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
             DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct:   301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query:   361 AIIALSSLLLETDLTPEQRVMIETVLKSSNXXXXXXXXXXXXSRLEDGSLELDNGPFNLQ 420
             AII+LSSLLLET+L+PEQRVMIET+LKSSN            SRLEDGSL L+N PF+LQ
Sbjct:   361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query:   421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
              +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct:   421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query:   481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-G 539
             SIIAS+ KPESL +   PEF+PV +D HFYL VQV D+GCG+  QDIPLLFTKF Q R G
Sbjct:   481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQVKDTGCGIHTQDIPLLFTKFVQPRTG 540

Query:   540 SSCQTPRAGLGLAICRR 556
             +       GLGLA+C+R
Sbjct:   541 TQRNHSGGGLGLALCKR 557
GO:0004673 "protein histidine kinase activity" evidence=ISS;TAS
GO:0007165 "signal transduction" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA
GO:0051740 "ethylene binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0004872 "receptor activity" evidence=TAS
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K894 gacS "Sensor protein GacS" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2314 GSU_2314 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XH57ETR2_PELHO2, ., 7, ., 1, 3, ., 30.72891.00.7503N/Ano
O48929ETR1_TOBAC2, ., 7, ., 1, 3, ., 30.70210.99280.7479N/Ano
Q9XH58ETR1_PELHO2, ., 7, ., 1, 3, ., 30.71271.00.7513N/Ano
Q38846ERS1_ARATH2, ., 7, ., 1, 3, ., 30.75581.00.9070yesno
Q9M7M1ETR1_PRUPE2, ., 7, ., 1, 3, ., 30.72891.00.7533N/Ano
Q41342ETR1_SOLLC2, ., 7, ., 1, 3, ., 30.70960.99820.7360N/Ano
O81122ETR1_MALDO2, ., 7, ., 1, 3, ., 30.72711.00.7503N/Ano
Q9ZWL6ETR1_PASED2, ., 7, ., 1, 3, ., 30.73241.00.7533N/Ano
O49230ETR1_BRAOL2, ., 7, ., 1, 3, ., 30.71140.99280.7510N/Ano
O82436ETR1_CUCMN2, ., 7, ., 1, 3, ., 30.73561.00.7513N/Ano
Q9SSY6ETR1_CUCSA2, ., 7, ., 1, 3, ., 30.73381.00.7513N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.976
3rd Layer2.7.13.30.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query556
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 7e-41
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 4e-40
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 2e-32
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 1e-31
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 1e-28
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 2e-26
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 7e-21
TIGR02966333 TIGR02966, phoR_proteo, phosphate regulon sensor k 5e-20
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 2e-19
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 2e-18
pfam01590143 pfam01590, GAF, GAF domain 2e-17
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 2e-17
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 4e-17
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 4e-15
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 1e-14
COG5002459 COG5002, VicK, Signal transduction histidine kinas 5e-14
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-13
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 3e-12
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 5e-12
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 1e-11
COG4251750 COG4251, COG4251, Bacteriophytochrome (light-regul 2e-10
PRK11006430 PRK11006, phoR, phosphate regulon sensor protein; 2e-10
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 6e-10
PRK10549466 PRK10549, PRK10549, signal transduction histidine- 6e-10
smart00065149 smart00065, GAF, Domain present in phytochromes an 4e-09
PRK10490895 PRK10490, PRK10490, sensor protein KdpD; Provision 4e-09
PRK10618 894 PRK10618, PRK10618, phosphotransfer intermediate p 8e-09
PRK10364457 PRK10364, PRK10364, sensor protein ZraS; Provision 4e-08
PRK09303380 PRK09303, PRK09303, adaptive-response sensory kina 3e-06
PRK09835482 PRK09835, PRK09835, sensor kinase CusS; Provisiona 1e-05
PRK09467435 PRK09467, envZ, osmolarity sensor protein; Provisi 4e-05
pfam13492129 pfam13492, GAF_3, GAF domain 5e-05
TIGR02916679 TIGR02916, PEP_his_kin, putative PEP-CTERM system 8e-05
PRK13837 828 PRK13837, PRK13837, two-component VirA-like sensor 1e-04
COG4192673 COG4192, COG4192, Signal transduction histidine ki 1e-04
COG3852363 COG3852, NtrB, Signal transduction histidine kinas 1e-04
PRK10604433 PRK10604, PRK10604, sensor protein RstB; Provision 2e-04
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 0.002
PRK09470461 PRK09470, cpxA, two-component sensor protein; Prov 0.002
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information 
 Score =  158 bits (400), Expect = 7e-41
 Identities = 92/281 (32%), Positives = 143/281 (50%), Gaps = 35/281 (12%)

Query: 289 RDHELELIDVVADQVAVALS---HAAILEDSMRARNQ-LMEQNVALDS-------ARREA 337
           RD     + + AD+  VA     H   LE  +  R Q L E N  L++       AR EA
Sbjct: 398 RDTAAHNLKLQADERQVAQELQEHKESLEQLVAQRTQELAETNERLNAEVKNHAKARAEA 457

Query: 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVD 397
           E+A  A++ F A M+HE+RT ++ I+    LL +T LT +Q+  ++ + +S   L  +++
Sbjct: 458 EEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILN 517

Query: 398 DVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDE 457
           D+LD S++E G L +   PF+L  +L +V  L+   A  K + + L +  +LP +  GD 
Sbjct: 518 DILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDG 577

Query: 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVND 517
            R+ Q ++N+VGNA+KFT  G V +                    VS +    L  +V D
Sbjct: 578 PRIRQVLINLVGNAIKFTDRGSVVL-------------------RVSLNDDSSLLFEVED 618

Query: 518 SGCGVPPQDIPLLFTKFAQS--RGSSCQTPRAGLGLAICRR 556
           +GCG+  ++   LF  F Q+  R  S  T   GLGLAI +R
Sbjct: 619 TGCGIAEEEQATLFDAFTQADGRRRSGGT---GLGLAISQR 656

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional Back     alignment and domain information
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated Back     alignment and domain information
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional Back     alignment and domain information
>gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|222174 pfam13492, GAF_3, GAF domain Back     alignment and domain information
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase Back     alignment and domain information
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 556
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK10490895 sensor protein KdpD; Provisional 100.0
COG3275557 LytS Putative regulator of cell autolysis [Signal 100.0
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 100.0
PRK13837 828 two-component VirA-like sensor kinase; Provisional 100.0
PRK11091 779 aerobic respiration control sensor protein ArcB; P 99.98
PRK10618 894 phosphotransfer intermediate protein in two-compon 99.97
PRK09303380 adaptive-response sensory kinase; Validated 99.97
COG5002459 VicK Signal transduction histidine kinase [Signal 99.97
PRK10841 924 hybrid sensory kinase in two-component regulatory 99.96
COG4251750 Bacteriophytochrome (light-regulated signal transd 99.96
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 99.96
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 99.96
PRK15347 921 two component system sensor kinase SsrA; Provision 99.96
COG4191603 Signal transduction histidine kinase regulating C4 99.95
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 99.95
PRK11006430 phoR phosphate regulon sensor protein; Provisional 99.95
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.94
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.94
PRK10364457 sensor protein ZraS; Provisional 99.93
PRK10604433 sensor protein RstB; Provisional 99.93
PRK10815485 sensor protein PhoQ; Provisional 99.92
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.92
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.92
COG5000712 NtrY Signal transduction histidine kinase involved 99.92
PRK10755356 sensor protein BasS/PmrB; Provisional 99.91
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.91
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.9
PRK10337449 sensor protein QseC; Provisional 99.9
PRK09835482 sensor kinase CusS; Provisional 99.9
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.89
PRK11100475 sensory histidine kinase CreC; Provisional 99.89
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.89
PRK09470461 cpxA two-component sensor protein; Provisional 99.88
PRK09467435 envZ osmolarity sensor protein; Provisional 99.88
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.87
COG4192673 Signal transduction histidine kinase regulating ph 99.87
PRK11360607 sensory histidine kinase AtoS; Provisional 99.85
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.84
PRK11644495 sensory histidine kinase UhpB; Provisional 99.84
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.83
PRK13557 540 histidine kinase; Provisional 99.81
PRK13560807 hypothetical protein; Provisional 99.78
COG3290537 CitA Signal transduction histidine kinase regulati 99.77
PRK11086542 sensory histidine kinase DcuS; Provisional 99.72
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.68
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.66
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.65
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.6
PRK13559361 hypothetical protein; Provisional 99.56
COG4564459 Signal transduction histidine kinase [Signal trans 99.48
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.44
COG4585365 Signal transduction histidine kinase [Signal trans 99.41
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.34
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.24
PRK10547 670 chemotaxis protein CheA; Provisional 99.22
COG2972456 Predicted signal transduction protein with a C-ter 99.22
COG3920221 Signal transduction histidine kinase [Signal trans 99.2
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.16
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 99.11
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.01
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 99.0
PRK04184 535 DNA topoisomerase VI subunit B; Validated 98.93
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 98.88
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.85
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 98.83
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.8
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 98.72
PRK04069161 serine-protein kinase RsbW; Provisional 98.72
PRK05022 509 anaerobic nitric oxide reductase transcription reg 98.72
KOG0519 786 consensus Sensory transduction histidine kinase [S 98.69
PRK03660146 anti-sigma F factor; Provisional 98.66
COG0643 716 CheA Chemotaxis protein histidine kinase and relat 98.61
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.59
COG3605 756 PtsP Signal transduction protein containing GAF an 98.58
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 98.57
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.55
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.53
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 98.46
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.38
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 98.17
COG3604 550 FhlA Transcriptional regulator containing GAF, AAA 98.13
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 98.13
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.02
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.02
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 97.84
PRK13558665 bacterio-opsin activator; Provisional 97.84
TIGR02851180 spore_V_T stage V sporulation protein T. Members o 97.83
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 97.82
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 97.71
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 97.35
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 97.26
PF14501100 HATPase_c_5: GHKL domain 96.94
COG1956163 GAF domain-containing protein [Signal transduction 96.85
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 96.76
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 96.59
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 96.54
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 96.31
PRK05644 638 gyrB DNA gyrase subunit B; Validated 96.04
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 95.98
PRK14083 601 HSP90 family protein; Provisional 95.62
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 95.54
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 95.36
PRK05218 613 heat shock protein 90; Provisional 95.25
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 94.86
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 94.55
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 94.45
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 94.08
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 93.69
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 93.68
COG5381184 Uncharacterized protein conserved in bacteria [Fun 93.48
PF0658082 His_kinase: Histidine kinase; InterPro: IPR010559 93.33
PLN03128 1135 DNA topoisomerase 2; Provisional 93.09
PLN03237 1465 DNA topoisomerase 2; Provisional 92.02
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 92.01
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 91.9
PTZ00109 903 DNA gyrase subunit b; Provisional 91.43
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 91.39
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 91.03
PTZ00130 814 heat shock protein 90; Provisional 90.93
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 90.58
PF06018177 CodY: CodY GAF-like domain; InterPro: IPR010312 Th 89.15
COG5385214 Uncharacterized protein conserved in bacteria [Fun 88.5
PRK10963223 hypothetical protein; Provisional 87.62
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 87.09
PRK04158256 transcriptional repressor CodY; Validated 83.35
PF0773068 HisKA_3: Histidine kinase; InterPro: IPR011712 Two 81.3
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-42  Score=350.25  Aligned_cols=440  Identities=21%  Similarity=0.296  Sum_probs=317.1

Q ss_pred             hhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhh-------HHHHHHh----cccchhhHHHHHHHHHH
Q 008718           24 SDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLT-------HFISLWT----FTVHSKAVAVVMTIAKM   92 (556)
Q Consensus        24 s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~-------h~l~i~~----~~~~~~~~~~~~~~~~~   92 (556)
                      .|.++++.++.+-..++++..+.=+...--++++.|.++.+.-.+       -++.++.    |..|-|.+. +...-.+
T Consensus       397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~  475 (890)
T COG2205         397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL  475 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence            677888888888877777655554433333333344332221111       1111111    112211110 1112233


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 008718           93 ACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGR  172 (556)
Q Consensus        93 ~~a~~s~~~a~~l~~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~  172 (556)
                      +|.+++++.|++                 ..++.++++++....++++++.+.++++++.|..+.+.++++....+.+.+
T Consensus       476 vTf~vml~vai~-----------------t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~  538 (890)
T COG2205         476 VTFAVMLAVALL-----------------TGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS  538 (890)
T ss_pred             HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            444444444444                 345899999999999999999999999999999999999999999999999


Q ss_pred             hhCCceeEEEeccCCCCeeEEEEeeccccccCccccc-CChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeee
Q 008718          173 TLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVR  251 (556)
Q Consensus       173 ~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (556)
                      +++. ++.++++++++....  ......      +.. +......++.++++-        .     ......|......
T Consensus       539 ~~~~-~v~i~l~~~~~~~~~--~~~~~~------l~~~d~aaa~W~~~~~~~A--------G-----~gTdTlpg~~~~~  596 (890)
T COG2205         539 LLNQ-RVVILLPDDNGKLQP--LGNPDG------LSADDRAAAQWAFENGKPA--------G-----AGTDTLPGAKYLY  596 (890)
T ss_pred             HhCC-ceEEEEecCCccccc--ccCCcc------ccHHHHHHhhchhhCCCcc--------c-----cCCCCCCCCceeE
Confidence            9998 677778876554311  111100      000 011112223222210        0     1222244444555


Q ss_pred             eccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718          252 VPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALD  331 (556)
Q Consensus       252 ~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~  331 (556)
                      .|              +..++...||+.+........++++..++..++++++.|+++..+.++..+.+-          
T Consensus       597 lP--------------l~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l----------  652 (890)
T COG2205         597 LP--------------LKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARL----------  652 (890)
T ss_pred             ee--------------cccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            56              777788899999998877789999999999999999999998887766544321          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 008718          332 SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDG  408 (556)
Q Consensus       332 ~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~--~~~-~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~  408 (556)
                           ..+.++.+++|++++||||||||++|.|.++.|...  .++ ++..+.+..|.+.++++..++++++++.|+++|
T Consensus       653 -----~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG  727 (890)
T COG2205         653 -----AAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSG  727 (890)
T ss_pred             -----HHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence                 122345578999999999999999999999999875  334 447789999999999999999999999999999


Q ss_pred             CccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeC
Q 008718          409 SLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAK  488 (556)
Q Consensus       409 ~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~  488 (556)
                      .++++.++..+.+++.+++..+.......  .+.++++.+++ ++..|...+.||+.||++||+||++++..+-+....+
T Consensus       728 ~~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~  804 (890)
T COG2205         728 GVNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE  804 (890)
T ss_pred             CcccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe
Confidence            99999999999999999999888776444  46666777766 4777999999999999999999999877544444444


Q ss_pred             CCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeeccc
Q 008718          489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICR  555 (556)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k  555 (556)
                      .+                   .++++|.|+|+|||++..++||++||+...... ..|+||||+|||
T Consensus       805 ~~-------------------~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~  851 (890)
T COG2205         805 RE-------------------NVVFSVIDEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICR  851 (890)
T ss_pred             cc-------------------eEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHH
Confidence            44                   399999999999999999999999999766443 679999999997

>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>TIGR02851 spore_V_T stage V sporulation protein T Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK10963 hypothetical protein; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PRK04158 transcriptional repressor CodY; Validated Back     alignment and domain information
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query556
3dge_A258 Structure Of A Histidine Kinase-response Regulator 2e-10
2c2a_A258 Structure Of The Entire Cytoplasmic Portion Of A Se 2e-10
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 7e-05
3a0r_A349 Crystal Structure Of Histidine Kinase Thka (Tm1359) 7e-04
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 344 RNDFRAVMNHEMRTLMHAIIALSSL----LLETDLTPEQRVMIETVLKSSNXXXXXXXXX 399
           + +F A ++HE+RT + AI A +      L E DL+   +  +E ++  SN         
Sbjct: 20  KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLST-LKEFLEVIIDQSNHLENLLNEL 78
Query: 400 XXXSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR 459
              SRLE  SL+++    +L  ++   +  IK  AS   +++        P  A  D  R
Sbjct: 79  LDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTR 138
Query: 460 LMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 515
           + Q +LN++ N VK++K    + YV +I                      DG   + V+ 
Sbjct: 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILD------------------EKDGGVLIIVE- 179
Query: 516 NDSGCGVPPQDIPLLFTKFAQSRGS-SCQTPRAGLGLAICR 555
            D+G G+P      +F +F +   S + + P  GLGLAI +
Sbjct: 180 -DNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITK 219
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query556
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 1e-56
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 4e-49
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 3e-24
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 8e-22
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 3e-21
3p01_A184 Two-component response regulator; PSI-2, midwest c 6e-19
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 4e-18
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 5e-17
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 3e-16
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 4e-16
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 4e-16
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 3e-14
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 3e-14
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 4e-14
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 7e-14
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 9e-14
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 2e-13
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 2e-12
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 7e-10
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 3e-09
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 3e-09
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 7e-09
2qyb_A181 Membrane protein, putative; GAF domain, domain of 2e-06
4fmt_A228 CHPT protein; A phosphotransfer protein, A two-com 3e-06
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 3e-06
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-05
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 4e-05
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 7e-04
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  190 bits (484), Expect = 1e-56
 Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 34/248 (13%)

Query: 313 LEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET 372
               +   + +++   AL        +A   + DF   +++E+RT +  II  S LL   
Sbjct: 11  SSGLVPRGSHMLQS--ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERA 68

Query: 373 D-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIK 431
           D ++   R  +  V  ++  L   +DDVLD+++++ G + L+     +  +L    +   
Sbjct: 69  DGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERAL 128

Query: 432 PVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPE 490
             A    +++ +    ++     GD KRL QT+ ++V NA++ T   G V++ A  A  E
Sbjct: 129 KDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGE 187

Query: 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR--GSSCQTPRAG 548
                               +R+ V+D+G GVP      +F +F      G        G
Sbjct: 188 --------------------VRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGP-------G 220

Query: 549 LGLAICRR 556
           LGLA+ + 
Sbjct: 221 LGLALVKA 228
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>4fmt_A CHPT protein; A phosphotransfer protein, A two-component signaling pathway structural genomics, joint center for structural genomics; 2.30A {Caulobacter crescentus} Length = 228 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Length = 169 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query556
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 99.97
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 99.96
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.94
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 99.93
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 99.93
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.92
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 99.92
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 99.92
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.92
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.91
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.9
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.83
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 99.82
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.74
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.74
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.72
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.71
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.7
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.68
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.65
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.56
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.51
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.47
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.47
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.45
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.43
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.42
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.37
3zxo_A129 Redox sensor histidine kinase response regulator; 99.37
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.36
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.35
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.32
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.3
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.26
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.25
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.2
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.19
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 99.15
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.14
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.14
2qyb_A181 Membrane protein, putative; GAF domain, domain of 99.14
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.13
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 99.13
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.12
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.1
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 99.1
3hcy_A151 Putative two-component sensor histidine kinase PR; 99.06
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.02
1vhm_A195 Protein YEBR; structural genomics, unknown functio 99.01
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 98.98
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 98.97
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 98.92
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 98.88
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 98.86
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 98.81
4e04_A327 Bacteriophytochrome (light-regulated signal trans 98.81
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 98.78
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 98.78
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 98.77
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 98.76
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 98.73
3eea_A162 GAF domain/HD domain protein; structural genomics, 98.6
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.52
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.52
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.47
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 98.43
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 98.42
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.42
4eho_A635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.36
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.27
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 98.15
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.13
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 97.89
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.61
2wer_A 220 ATP-dependent molecular chaperone HSP82; ATPase, A 97.47
2w1r_A123 Spovt, stage V sporulation protein T; regulatory G 97.46
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 97.43
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 97.29
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 97.25
1yc1_A 264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 97.12
3fv5_A 201 DNA topoisomerase 4 subunit B; topoisomerase IV B 96.85
2gqp_A 236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 96.71
3t0h_A 228 Heat shock protein HSP 90-alpha; chaperone, ATPase 96.66
4emv_A 226 DNA topoisomerase IV, B subunit; protein-inhibitor 96.58
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 96.55
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 96.5
4duh_A 220 DNA gyrase subunit B; structure-based drug design, 96.49
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 96.48
1qy5_A 269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 96.27
3peh_A 281 Endoplasmin homolog; structural genomics, structur 96.26
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 96.17
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 96.13
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 95.85
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 95.72
3o0i_A 256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 95.5
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 95.12
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 94.94
3nmq_A 239 Heat shock protein HSP 90-beta; ATPase, chaperone- 94.72
3e98_A252 GAF domain of unknown function; structural genomic 94.29
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 94.18
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 93.35
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 91.51
4a2l_A795 BT_4663, two-component system sensor histidine kin 86.43
3ott_A758 Two-component system sensor histidine kinase; beta 86.23
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=99.97  E-value=6.6e-30  Score=244.83  Aligned_cols=200  Identities=28%  Similarity=0.448  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccc
Q 008718          337 AEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELD  413 (556)
Q Consensus       337 ~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~  413 (556)
                      +++..+.+.+|++.++|||||||++|.++++.+...   ...+..+++++.+.+.++++..++++++++++++.+...+.
T Consensus        13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~   92 (258)
T 2c2a_A           13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN   92 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc
Confidence            344556678899999999999999999999998754   23345678899999999999999999999999988888888


Q ss_pred             ccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC----eEEEEEeeeCC
Q 008718          414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKP  489 (556)
Q Consensus       414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g----~~~i~~~~~~~  489 (556)
                      .+++++.+++++++..+......+++.+.++.+...+..+.+|+..+.+++.||+.||+||++++    .+.+.....++
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~  172 (258)
T 2c2a_A           93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG  172 (258)
T ss_dssp             CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred             cceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCC
Confidence            88999999999999999998888999998877644455567799999999999999999999754    23333333222


Q ss_pred             CCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718          490 ESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR  556 (556)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~  556 (556)
                                          .+.|+|+|||+|||++.++++|+|||+.+...+ ...|+||||++||+
T Consensus       173 --------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~  220 (258)
T 2c2a_A          173 --------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKE  220 (258)
T ss_dssp             --------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHH
T ss_pred             --------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHH
Confidence                                399999999999999999999999998775533 23599999999984
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis} Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 556
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 1e-23
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 3e-18
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 4e-17
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 1e-16
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 9e-16
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 6e-11
d2hkja3 219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 2e-10
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 5e-10
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 9e-09
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 1e-07
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 6e-07
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 7e-05
d2k2na1170 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec 6e-04
d1i58a_189 d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m 0.003
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score = 95.4 bits (237), Expect = 1e-23
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGN 470
           +++    +L  ++   +  IK  AS   +++        P  A  D  R+ Q +LN++ N
Sbjct: 1   QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60

Query: 471 AVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530
            VK++K+                         +       + + V D+G G+P      +
Sbjct: 61  GVKYSKKDAPDKYVK---------------VILDEKDG-GVLIIVEDNGIGIPDHAKDRI 104

Query: 531 FTKFAQSRGS-SCQTPRAGLGLAICRR 556
           F +F +   S + + P  GLGLAI + 
Sbjct: 105 FEQFYRVDSSLTYEVPGTGLGLAITKE 131
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query556
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 99.91
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.87
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.87
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.85
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.8
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.77
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.76
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.74
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.42
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.29
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.26
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.23
d2hkja3 219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.18
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.11
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 98.97
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 98.92
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 98.86
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.8
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 98.79
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.64
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.58
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.57
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 97.82
d1h7sa2 203 DNA mismatch repair protein PMS2 {Human (Homo sapi 97.78
d1b63a2 218 DNA mismatch repair protein MutL {Escherichia coli 97.73
d1kija2 212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 96.35
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 95.93
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 95.79
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 95.66
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 95.24
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 94.88
d2gqpa1 227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 94.62
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.3e-24  Score=186.70  Aligned_cols=125  Identities=26%  Similarity=0.419  Sum_probs=101.1

Q ss_pred             ccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeee
Q 008718          412 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVA  487 (556)
Q Consensus       412 l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~  487 (556)
                      ++.+++|+.++++++++.++..+..+++++.++.+.+.+..+.+|+.++.||+.||++||+||+++|+    +.+.....
T Consensus         2 l~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~   81 (161)
T d2c2aa2           2 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK   81 (161)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred             CccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEEec
Confidence            56679999999999999999999999999999887766666788999999999999999999998764    33333222


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718          488 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR  556 (556)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~  556 (556)
                       ++                   ++.|+|+|||+|||++.+++||+|||+.+...+ ...|+||||++||+
T Consensus        82 -~~-------------------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~  131 (161)
T d2c2aa2          82 -DG-------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKE  131 (161)
T ss_dssp             -TT-------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHH
T ss_pred             -CC-------------------EEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHH
Confidence             22                   499999999999999999999999999876543 34599999999984
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure