Citrus Sinensis ID: 008725

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------

MNSLLANGISSFSPQPTVDSPKLSKGFHPKLENPKFIVPKSSRLFKVRADVGYGSSTISSDPSSSPGNLSTSTQSSDDKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

ccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHccccEEEEEEcEEEEEcHHHHHHHccEEEccHHHHHHHcHHHHHHHHcccccccccHHHHHHHHHccccEEEEEccccEEcccEEEEEEEcccccccccEEEEEEccccEEEEEccccccccccccEEEEEEEEEEEcccEEEEEEEEccccccccccccEEEEEEccEEEcccccEEEEEEEEcccEEEEEEccEEEEccccEEEEEEEEEEcccEEEcccccEEEEccccccEEEEEEEEEcccEEEEEEEEEEcccccccccEEEccEEEccccccccccccEEEEcccEEEEEccccccccHHHHHHHHHccccHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHccccc

cHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccHHHEEEEcccccccccccHccccHHHHHHHHHHcccHHHHHHHHcHHHHHHEcccEHHHHHHHHHHHccEEEEcHHHHHHHcHHHHHHHHcccccccccHHHHHHHHEEccccEEEEccccccccEEEEEEEEcccccccEEEEEEEEccccEEEEEccccccccccccHHEEEEEHEHHcccEEEEEEEEcccccccccccEEEEEEEccccccccccEEEEEEEEcccEEEEccccEEEEccccccEEEEEEEEccccccccccEEEEEcccccEEEEEccEEcccccccccEEEEEcccccccccccccccEEEccccccccccEEEEEccccEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccEccccc

mnsllangissfspqptvdspklskgfhpklenpkfivpkssrlfkvradvgygsstissdpssspgnlststqssdDKIQEILRnrdydkkfgfnwdidsvtipkgltKETIHLISSLKEEPAWMLEYRLSAFEKFLKmkepnwsdnryppinfqdmcyysapkkkptlnsldeaDPELIRYFDklgvplneqnrlanVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLgrvvpsedNYYAALNAAVfsdgsfcyipkntkcpmpistYFRINAMETGQFERTLivadegsfveylegctapsydrnqLHAAVVELYCAEGaeikystvqnwyagdeegnggiynfvtkrglcagdrskiswTQVETgsaitwkypsvvlegddtvGEFYSVALTnnyqqadtgtkmihkgkntRSRIISKgisvgnsrncYRGLVQVQSKaenarnssqcdsmllgdtaaantypyiqvknptarveheastskigedQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

MNSLLANgissfspqptvdSPKLSKGfhpklenpkfivpkssrlFKVRADVGYGsstissdpssspgnlststqssddkiQEILRNrdydkkfgfnwdidsvtipkgltKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATthrktleeagVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTqvetgsaitwkypsvVLEGDDTVGEFYSVALTnnyqqadtgtkmihkgkntrsriiskgisvgnsrnCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEAstskigedqlFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

MNSLLANGISSFSPQPTVDSPKLSKGFHPKLENPKFIVPKSSRLFKVRADVGYGsstissdpssspgnlststqssDDKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

*******************************************LFKVR**********************************ILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSA*************DPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHK****RSRIISKGISVGNSRNCYRGLVQV***************MLLGDTAAANTYPYIQVKNP***********KIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEV*************

********IS*************************************************************************LRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAP**********EADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

MNSLLANGISSFSPQPTVDSPKLSKGFHPKLENPKFIVPKSSRLFKVRADVGYG***********************DKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQV***********QCDSMLLGDTAAANTYPYIQVKNP**********SKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

**********SFSP*PTVDSPKLSKGFHPKLENPKFIVPKSSRLFKVRADVGYG**********************DDKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKL*****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		556	2.2.26 [Sep-21-2011]
Q9ZS97		557	UPF0051 protein ABCI8, ch	yes	no	0.994	0.992	0.830	0.0
P48260		486	UPF0051 protein ycf24 OS=	N/A	no	0.870	0.995	0.683	0.0
Q55790		480	UPF0051 protein slr0074 O	N/A	no	0.847	0.981	0.694	0.0
P51240		487	UPF0051 protein ycf24 OS=	N/A	no	0.874	0.997	0.657	0.0
Q1XDP7		487	UPF0051 protein ycf24 OS=	N/A	no	0.874	0.997	0.651	0.0
Q3E8H7		470	Putative UPF0051 protein	no	no	0.829	0.980	0.617	0.0
P49530		486	UPF0051 protein ycf24 OS=	N/A	no	0.847	0.969	0.672	0.0
O78473		483	UPF0051 protein ycf24 OS=	yes	no	0.836	0.962	0.645	0.0
Q9TLX2		483	UPF0051 protein ycf24 OS=	N/A	no	0.852	0.981	0.578	1e-169
P77522		495	FeS cluster assembly prot	N/A	no	0.866	0.973	0.548	1e-160

>sp\|Q9ZS97\|AB8I_ARATH UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1	Back alignment and function desciption

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/560 (83%), Positives = 506/560 (90%), Gaps = 7/560 (1%)

Query: 1   MNSLLANGISSFSPQPTVDSPKLSKGFHPKLENPKFIVPKSSR----LFKVRADVGYGSS 56
           M SLLANGISSFSPQPT DS K  KGFHPK E+ KF  PKS      +FK+RADVG  S 
Sbjct: 1   MASLLANGISSFSPQPTSDSSKSPKGFHPKPESLKFPSPKSLNPTRPIFKLRADVGIDSR 60

Query: 57  TISSDPSSSPGNLSTSTQSSDDKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLI 116
            I +  SSS     TST SS DK+Q+  +N DYDKK+GF  DIDS TIPKGL++ETI LI
Sbjct: 61  PIGASESSS---SGTSTVSSTDKLQQYFQNLDYDKKYGFVEDIDSFTIPKGLSEETIRLI 117

Query: 117 SSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEA 176
           S LKEEP WMLE+R  A+ KFLK++EP WSDNRYP INFQDMCYYSAPKKKPTLNSLDE 
Sbjct: 118 SKLKEEPDWMLEFRFKAYAKFLKLEEPKWSDNRYPSINFQDMCYYSAPKKKPTLNSLDEV 177

Query: 177 DPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREH 236
           DP+L+ YFDKLGVPL EQ RLANVAVDAV+DSVSIATTHRKTLE++GVIFCSISEAIRE+
Sbjct: 178 DPQLLEYFDKLGVPLTEQKRLANVAVDAVIDSVSIATTHRKTLEKSGVIFCSISEAIREY 237

Query: 237 PDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFE 296
           PDL++KYLGRVVPS+DNYYAALN+AVFSDGSFCYIPKNT+CPMPISTYFRINAMETGQFE
Sbjct: 238 PDLIKKYLGRVVPSDDNYYAALNSAVFSDGSFCYIPKNTRCPMPISTYFRINAMETGQFE 297

Query: 297 RTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNG 356
           RTLIVA+EGSFVEYLEGCTAPSYD NQLHAAVVELYC +GAEIKYSTVQNWYAGDE+G G
Sbjct: 298 RTLIVAEEGSFVEYLEGCTAPSYDTNQLHAAVVELYCGKGAEIKYSTVQNWYAGDEQGKG 357

Query: 357 GIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQA 416
           GIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDD+VGEFYSVALTNNYQQA
Sbjct: 358 GIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDSVGEFYSVALTNNYQQA 417

Query: 417 DTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAA 476
           DTGTKMIHKGKNT+SRIISKGIS G+SRNCYRGLVQVQSKAE A+N+S CDSML+GD AA
Sbjct: 418 DTGTKMIHKGKNTKSRIISKGISAGHSRNCYRGLVQVQSKAEGAKNTSTCDSMLIGDKAA 477

Query: 477 ANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELP 536
           ANTYPYIQVKNP+A+VEHEASTSKIGEDQLFYFQQRGID+E+A+AAMISGFCRDVFN+LP
Sbjct: 478 ANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDHERALAAMISGFCRDVFNKLP 537

Query: 537 DEFGAEVNQLMSLKLEGSVG 556
           DEFGAEVNQLMS+KLEGSVG
Sbjct: 538 DEFGAEVNQLMSIKLEGSVG 557

Involved in light signaling, probably by mediating the transport and correct distribution of protoporphyrin IX, a chlorophyll precursor, in response to far-red light.
Arabidopsis thaliana (taxid: 3702)

>sp\|P48260\|YCF24_CYAPA UPF0051 protein ycf24 OS=Cyanophora paradoxa GN=ycf24 PE=3 SV=1	Back alignment and function description

>sp\|Q55790\|Y074_SYNY3 UPF0051 protein slr0074 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0074 PE=3 SV=1	Back alignment and function description

>sp\|P51240\|YCF24_PORPU UPF0051 protein ycf24 OS=Porphyra purpurea GN=ycf24 PE=3 SV=1	Back alignment and function description

>sp\|Q1XDP7\|YCF24_PORYE UPF0051 protein ycf24 OS=Porphyra yezoensis GN=ycf24 PE=3 SV=1	Back alignment and function description

>sp\|Q3E8H7\|AB9I_ARATH Putative UPF0051 protein ABCI9 OS=Arabidopsis thaliana GN=ABCI9 PE=3 SV=1	Back alignment and function description

>sp\|P49530\|YCF24_ODOSI UPF0051 protein ycf24 OS=Odontella sinensis GN=ycf24 PE=3 SV=1	Back alignment and function description

>sp\|O78473\|YCF24_GUITH UPF0051 protein ycf24 OS=Guillardia theta GN=ycf24 PE=3 SV=1	Back alignment and function description

>sp\|Q9TLX2\|YCF24_CYACA UPF0051 protein ycf24 OS=Cyanidium caldarium GN=ycf24 PE=3 SV=1	Back alignment and function description

>sp\|P77522\|SUFB_ECOLI FeS cluster assembly protein SufB OS=Escherichia coli (strain K12) GN=sufB PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		556
255554919		553	Protein sufB, putative [Ricinus communis	0.994	1.0	0.868	0.0
224078630		554	predicted protein [Populus trichocarpa]	0.996	1.0	0.856	0.0
449454736		554	PREDICTED: UPF0051 protein ABCI8, chloro	0.992	0.996	0.854	0.0
147774138		554	hypothetical protein VITISV_038836 [Viti	0.985	0.989	0.845	0.0
225467712		554	PREDICTED: UPF0051 protein ABCI8, chloro	0.985	0.989	0.845	0.0
312282597		566	unnamed protein product [Thellungiella h	0.989	0.971	0.805	0.0
15234447		557	UPF0051 protein ABCI8 [Arabidopsis thali	0.994	0.992	0.830	0.0
297813861		556	ATABC1 [Arabidopsis lyrata subsp. lyrata	0.989	0.989	0.823	0.0
357503803		547	ATP-binding cassette transporter subfami	0.976	0.992	0.807	0.0
356548549		544	PREDICTED: UPF0051 protein ABCI8, chloro	0.973	0.994	0.833	0.0

>gi\|255554919\|ref\|XP_002518497.1\| Protein sufB, putative [Ricinus communis] gi\|223542342\|gb\|EEF43884.1\| Protein sufB, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/556 (86%), Positives = 513/556 (92%), Gaps = 3/556 (0%)

Query: 1   MNSLLANGISSFSPQPTVDSPKLSKGFHPKLENPKFIVPKSSRLFKVRADVGYGSSTISS 60
           M SLLANGIS FSPQP  DS KL K F   L+      PK +   K+RADVG+ S T ++
Sbjct: 1   MASLLANGISRFSPQPISDSAKLHKPFSLPLKPAFNKAPKPANFVKIRADVGFDSKTRNT 60

Query: 61  DPSSSPGNLSTSTQSSDDKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLK 120
           D   S  N+STST SSDDKI+EILRNRDYDKKFGF  DIDS +IPKGL++ETI LISSLK
Sbjct: 61  D---SGNNISTSTTSSDDKIREILRNRDYDKKFGFTMDIDSYSIPKGLSEETIRLISSLK 117

Query: 121 EEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPEL 180
           EEP WMLE+RL+AFEKFLK+KEP WSDNRYP I+FQD+CYYSAPKKKPTLNSLDEADPEL
Sbjct: 118 EEPDWMLEFRLNAFEKFLKLKEPKWSDNRYPSIDFQDICYYSAPKKKPTLNSLDEADPEL 177

Query: 181 IRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLV 240
           + YFD+LGVPLNE+NRLANVAVDAVLDSVSIATTHR+TLE+AGVIFCSISEAI+E+PDLV
Sbjct: 178 LMYFDRLGVPLNERNRLANVAVDAVLDSVSIATTHRQTLEKAGVIFCSISEAIKEYPDLV 237

Query: 241 RKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLI 300
           RKYLGRVVPSEDNYYAALN+AVFSDGSFCYIPK+TKCPM ISTYFRINAMETGQFERTLI
Sbjct: 238 RKYLGRVVPSEDNYYAALNSAVFSDGSFCYIPKDTKCPMQISTYFRINAMETGQFERTLI 297

Query: 301 VADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYN 360
           VAD+ SFVEYLEGCTAPSYD NQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEG GGIYN
Sbjct: 298 VADDRSFVEYLEGCTAPSYDTNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGRGGIYN 357

Query: 361 FVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGT 420
           FVTKRGLC+GDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGT
Sbjct: 358 FVTKRGLCSGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGT 417

Query: 421 KMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTY 480
           KMIHKGKNTRSRIISKGIS GNSRNCYRGLVQ+QSKAENARN SQCDSML+GDTAAANTY
Sbjct: 418 KMIHKGKNTRSRIISKGISAGNSRNCYRGLVQIQSKAENARNLSQCDSMLIGDTAAANTY 477

Query: 481 PYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFG 540
           PYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFC+DVFNELPDEFG
Sbjct: 478 PYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCQDVFNELPDEFG 537

Query: 541 AEVNQLMSLKLEGSVG 556
           AEVNQLMSLKLEGSVG
Sbjct: 538 AEVNQLMSLKLEGSVG 553

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224078630\|ref\|XP_002305582.1\| predicted protein [Populus trichocarpa] gi\|222848546\|gb\|EEE86093.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449454736\|ref\|XP_004145110.1\| PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Cucumis sativus] gi\|449488362\|ref\|XP_004158013.1\| PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147774138\|emb\|CAN76788.1\| hypothetical protein VITISV_038836 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225467712\|ref\|XP_002272917.1\| PREDICTED: UPF0051 protein ABCI8, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi\|312282597\|dbj\|BAJ34164.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi|15234447|ref|NP_192386.1| UPF0051 protein ABCI8 [Arabidopsis thaliana] gi|75216473|sp|Q9ZS97.1|AB8I_ARATH RecName: Full=UPF0051 protein ABCI8, chloroplastic; AltName: Full=ABC transporter I family member 8; Short=ABC transporter ABCI.8; Short=AtABCI8; AltName: Full=Non-intrinsic ABC protein 1; Short=Protein ABC1; AltName: Full=Plastid sufB-like protein; AltName: Full=Protein LONG AFTER FAR-RED 6; Flags: Precursor gi|4115931|gb|AAD03441.1| contains similarity to Guillardia theta ABC transporter (GB:AF041468) [Arabidopsis thaliana] gi|7267235|emb|CAB80842.1| putative ABC transporter [Arabidopsis thaliana] gi|15529143|gb|AAK97666.1| AT4g04770/T4B21_16 [Arabidopsis thaliana] gi|15912265|gb|AAL08266.1| AT4g04770/T4B21_16 [Arabidopsis thaliana] gi|22655482|gb|AAM98333.1| At4g04770/T4B21_16 [Arabidopsis thaliana] gi|38175819|tpg|DAA01952.1| TPA_exp: putative ABC transporter 1 [Arabidopsis thaliana] gi|332657023|gb|AEE82423.1| UPF0051 protein ABCI8 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297813861\|ref\|XP_002874814.1\| ATABC1 [Arabidopsis lyrata subsp. lyrata] gi\|297320651\|gb\|EFH51073.1\| ATABC1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357503803\|ref\|XP_003622190.1\| ATP-binding cassette transporter subfamily I member 15 ABC component protein PpABCI15 [Medicago truncatula] gi\|355497205\|gb\|AES78408.1\| ATP-binding cassette transporter subfamily I member 15 ABC component protein PpABCI15 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356548549\|ref\|XP_003542663.1\| PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		556
TAIR\|locus:2138947		557	ABCI8 "AT4G04770" [Arabidopsis	0.994	0.992	0.814	1.9e-248
TAIR\|locus:504954963		470	ABCI9 "ATP-binding cassette I9	0.548	0.648	0.698	3.4e-178
UNIPROTKB\|Q60A77		481	sufB "FeS assembly protein Suf	0.839	0.970	0.659	1.2e-168
UNIPROTKB\|Q83BX7		484	sufB "ABC transporter-associat	0.850	0.977	0.642	4.7e-167
TIGR_CMR\|CBU_1360		484	CBU_1360 "conserved hypothetic	0.850	0.977	0.642	4.7e-167
TIGR_CMR\|SPO_2023		506	SPO_2023 "FeS assembly protein	0.832	0.915	0.611	4.1e-159
UNIPROTKB\|P77522		495	sufB "SufB component of SufBCD	0.829	0.931	0.566	8.4e-145
UNIPROTKB\|Q81XM1		465	sufB "FeS assembly protein Suf	0.818	0.978	0.408	3.5e-98
TIGR_CMR\|BA_5213		465	BA_5213 "FeS assembly protein	0.818	0.978	0.408	3.5e-98
UNIPROTKB\|Q71X17		464	sufB "FeS assembly protein Suf	0.814	0.976	0.403	1.6e-95

TAIR\|locus:2138947 ABCI8 "AT4G04770" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2393 (847.4 bits), Expect = 1.9e-248, P = 1.9e-248
 Identities = 456/560 (81%), Positives = 497/560 (88%)

Query:     1 MNSLLANGISSFSPQPTVDSPKLSKGFHPKLENPKFIVPKS---SR-LFKVRADVGYGXX 56
             M SLLANGISSFSPQPT DS K  KGFHPK E+ KF  PKS   +R +FK+RADVG    
Sbjct:     1 MASLLANGISSFSPQPTSDSSKSPKGFHPKPESLKFPSPKSLNPTRPIFKLRADVGIDSR 60

Query:    57 XXXXXXXXXXXXXXXXXXXXDDKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLI 116
                                  DK+Q+  +N DYDKK+GF  DIDS TIPKGL++ETI LI
Sbjct:    61 PIGASESSSSGTSTVSST---DKLQQYFQNLDYDKKYGFVEDIDSFTIPKGLSEETIRLI 117

Query:   117 SSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEA 176
             S LKEEP WMLE+R  A+ KFLK++EP WSDNRYP INFQDMCYYSAPKKKPTLNSLDE 
Sbjct:   118 SKLKEEPDWMLEFRFKAYAKFLKLEEPKWSDNRYPSINFQDMCYYSAPKKKPTLNSLDEV 177

Query:   177 DPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREH 236
             DP+L+ YFDKLGVPL EQ RLANVAVDAV+DSVSIATTHRKTLE++GVIFCSISEAIRE+
Sbjct:   178 DPQLLEYFDKLGVPLTEQKRLANVAVDAVIDSVSIATTHRKTLEKSGVIFCSISEAIREY 237

Query:   237 PDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFE 296
             PDL++KYLGRVVPS+DNYYAALN+AVFSDGSFCYIPKNT+CPMPISTYFRINAMETGQFE
Sbjct:   238 PDLIKKYLGRVVPSDDNYYAALNSAVFSDGSFCYIPKNTRCPMPISTYFRINAMETGQFE 297

Query:   297 RTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNG 356
             RTLIVA+EGSFVEYLEGCTAPSYD NQLHAAVVELYC +GAEIKYSTVQNWYAGDE+G G
Sbjct:   298 RTLIVAEEGSFVEYLEGCTAPSYDTNQLHAAVVELYCGKGAEIKYSTVQNWYAGDEQGKG 357

Query:   357 GIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQA 416
             GIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDD+VGEFYSVALTNNYQQA
Sbjct:   358 GIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDSVGEFYSVALTNNYQQA 417

Query:   417 DTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAA 476
             DTGTKMIHKGKNT+SRIISKGIS G+SRNCYRGLVQVQSKAE A+N+S CDSML+GD AA
Sbjct:   418 DTGTKMIHKGKNTKSRIISKGISAGHSRNCYRGLVQVQSKAEGAKNTSTCDSMLIGDKAA 477

Query:   477 ANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELP 536
             ANTYPYIQVKNP+A+VEHEASTSKIGEDQLFYFQQRGID+E+A+AAMISGFCRDVFN+LP
Sbjct:   478 ANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDHERALAAMISGFCRDVFNKLP 537

Query:   537 DEFGAEVNQLMSLKLEGSVG 556
             DEFGAEVNQLMS+KLEGSVG
Sbjct:   538 DEFGAEVNQLMSIKLEGSVG 557

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IDA

GO:2000030 "regulation of response to red or far red light" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006879 "cellular iron ion homeostasis" evidence=IDA;TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

TAIR\|locus:504954963 ABCI9 "ATP-binding cassette I9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60A77 sufB "FeS assembly protein SufB" [Methylococcus capsulatus str. Bath (taxid:243233)]	Back alignment and assigned GO terms

UNIPROTKB\|Q83BX7 sufB "ABC transporter-associated protein" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1360 CBU_1360 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2023 SPO_2023 "FeS assembly protein SufB" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|P77522 sufB "SufB component of SufBCD Fe-S cluster scaffold complex" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81XM1 sufB "FeS assembly protein SufB" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_5213 BA_5213 "FeS assembly protein SufB" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q71X17 sufB "FeS assembly protein SufB" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GB09	Y788_STAAS	No assigned EC number	0.4252	0.8183	0.9784	yes	no
Q6GIH0	Y880_STAAR	No assigned EC number	0.4252	0.8183	0.9784	yes	no
Q4L4T1	Y2035_STAHJ	No assigned EC number	0.4294	0.8183	0.9784	yes	no
P49530	YCF24_ODOSI	No assigned EC number	0.6723	0.8471	0.9691	N/A	no
P51240	YCF24_PORPU	No assigned EC number	0.6577	0.8741	0.9979	N/A	no
O32162	SUFB_BACSU	No assigned EC number	0.4077	0.8147	0.9741	yes	no
Q2YWN2	Y778_STAAB	No assigned EC number	0.4252	0.8183	0.9784	yes	no
Q5HHG8	Y918_STAAC	No assigned EC number	0.4252	0.8183	0.9784	yes	no
P48260	YCF24_CYAPA	No assigned EC number	0.6837	0.8705	0.9958	N/A	no
Q2FZY3	Y851_STAA8	No assigned EC number	0.4252	0.8183	0.9784	yes	no
Q55790	Y074_SYNY3	No assigned EC number	0.6940	0.8471	0.9812	N/A	no
Q7A6L4	Y778_STAAN	No assigned EC number	0.4252	0.8183	0.9784	yes	no
Q83KW2	SUFB_SHIFL	No assigned EC number	0.5469	0.8669	0.9737	yes	no
P77522	SUFB_ECOLI	No assigned EC number	0.5489	0.8669	0.9737	N/A	no
Q5HQP8	Y500_STAEQ	No assigned EC number	0.4294	0.8183	0.9784	yes	no
Q9ZS97	AB8I_ARATH	No assigned EC number	0.8303	0.9946	0.9928	yes	no
Q7A1E0	Y799_STAAW	No assigned EC number	0.4252	0.8183	0.9784	yes	no
O78473	YCF24_GUITH	No assigned EC number	0.6451	0.8363	0.9627	yes	no
Q1XDP7	YCF24_PORYE	No assigned EC number	0.6516	0.8741	0.9979	N/A	no
Q8CTA3	Y610_STAES	No assigned EC number	0.4294	0.8183	0.9784	yes	no
Q99VF9	Y846_STAAM	No assigned EC number	0.4252	0.8183	0.9784	yes	no
Q9TLX2	YCF24_CYACA	No assigned EC number	0.5786	0.8525	0.9813	N/A	no
Q49W57	Y1857_STAS1	No assigned EC number	0.4227	0.8147	0.9741	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		556
PRK11814		486	PRK11814, PRK11814, cysteine desulfurase activator	0.0
CHL00085		485	CHL00085, ycf24, putative ABC transporter	0.0
TIGR01980		448	TIGR01980, sufB, FeS assembly protein SufB	0.0
COG0719		412	COG0719, SufB, Cysteine desulfurase activator SufB	1e-157
pfam01458		230	pfam01458, UPF0051, Uncharacterized protein family	2e-70
TIGR01981		275	TIGR01981, sufD, FeS assembly protein SufD	5e-45
PRK10948		424	PRK10948, PRK10948, cysteine desulfurase activator	1e-08

>gnl\|CDD\|236990 PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	Back alignment and domain information

 Score =  949 bits (2455), Expect = 0.0
 Identities = 321/487 (65%), Positives = 392/487 (80%), Gaps = 5/487 (1%)

Query: 72  STQSSDDKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRL 131
           +   + D ++E L N++Y  K+GF  DI++  +PKGL ++ + LIS+ K EP WMLE+RL
Sbjct: 3   ANTETTDDVKE-LVNQEY--KYGFVTDIETDELPKGLNEDVVRLISAKKNEPEWMLEWRL 59

Query: 132 SAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPL 191
            A+  +L M+EP+W+   YPPI++QD+ YYSAPK K    SLDE DPEL+  F+KLG+PL
Sbjct: 60  KAYRHWLTMEEPHWAKVHYPPIDYQDISYYSAPKCKSKPKSLDEVDPELLETFEKLGIPL 119

Query: 192 NEQNRL--ANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVP 249
            EQ RL    VAVDAV DSVS+ATT ++ L EAGVIFCSISEAI+EHP+LV+KYLG VVP
Sbjct: 120 REQKRLAGREVAVDAVFDSVSVATTFKEKLAEAGVIFCSISEAIQEHPELVKKYLGSVVP 179

Query: 250 SEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVE 309
             DN++AALN+AVFSDGSF YIPK  +CPM +STYFRINA  TGQFERTLI+ADEGS+V 
Sbjct: 180 VNDNFFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAANTGQFERTLIIADEGSYVS 239

Query: 310 YLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCA 369
           YLEGCTAP  D NQLHAAVVEL   + AEIKYSTVQNWY GDE G GGIYNFVTKRGLC 
Sbjct: 240 YLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDENGKGGIYNFVTKRGLCR 299

Query: 370 GDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNT 429
           G+ SKISWTQVETGSAITWKYPS +L GD++VGEFYSVALTN +QQADTGTKMIH GKNT
Sbjct: 300 GENSKISWTQVETGSAITWKYPSCILRGDNSVGEFYSVALTNGHQQADTGTKMIHIGKNT 359

Query: 430 RSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPT 489
           +S IISKGIS G+S+N YRGLV++  KA NARN +QCDS+L+GD   A+T+PYI+VKN +
Sbjct: 360 KSTIISKGISAGHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQCGAHTFPYIEVKNNS 419

Query: 490 ARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSL 549
           A+VEHEA+TSKI EDQLFY +QRGI  E A++ +++GFC++VF ELP EF  E  +L+++
Sbjct: 420 AQVEHEATTSKISEDQLFYCRQRGISEEDAVSMIVNGFCKEVFQELPMEFAVEAQKLLAI 479

Query: 550 KLEGSVG 556
            LEGSVG
Sbjct: 480 SLEGSVG 486

Length = 486

>gnl\|CDD\|214359 CHL00085, ycf24, putative ABC transporter	Back alignment and domain information

>gnl\|CDD\|131035 TIGR01980, sufB, FeS assembly protein SufB	Back alignment and domain information

>gnl\|CDD\|223791 COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|216514 pfam01458, UPF0051, Uncharacterized protein family (UPF0051)	Back alignment and domain information

>gnl\|CDD\|233666 TIGR01981, sufD, FeS assembly protein SufD	Back alignment and domain information

>gnl\|CDD\|236804 PRK10948, PRK10948, cysteine desulfurase activator complex subunit SufD; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		556
CHL00085		485	ycf24 putative ABC transporter	100.0
PRK11814		486	cysteine desulfurase activator complex subunit Suf	100.0
TIGR01980		448	sufB FeS assembly protein SufB. This protein, SufB	100.0
COG0719		412	SufB Cysteine desulfurase activator SufB [Posttran	100.0
PRK10948		424	cysteine desulfurase activator complex subunit Suf	100.0
TIGR01981		366	sufD FeS assembly protein SufD, group 1. This prot	100.0
PF01458		229	UPF0051: Uncharacterized protein family (UPF0051);	100.0
PF01458		229	UPF0051: Uncharacterized protein family (UPF0051);	98.33
TIGR01981		366	sufD FeS assembly protein SufD, group 1. This prot	97.57
TIGR01980		448	sufB FeS assembly protein SufB. This protein, SufB	97.48
CHL00085		485	ycf24 putative ABC transporter	97.45
PRK10948		424	cysteine desulfurase activator complex subunit Suf	97.42
PRK11814		486	cysteine desulfurase activator complex subunit Suf	97.31
COG0719		412	SufB Cysteine desulfurase activator SufB [Posttran	96.97

>CHL00085 ycf24 putative ABC transporter	Back alignment and domain information

Probab=100.00  E-value=1.3e-108  Score=896.12  Aligned_cols=474  Identities=69%  Similarity=1.143  Sum_probs=446.4

Q ss_pred             HHHHhhccccccCCCcccccceeecCCCCCHHHHHHHHcCCCCchHHHHHHHHHHHHhHhCCCCCCCCCCCCCCCccccc
Q 008725           80 IQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMC  159 (556)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~v~~is~~~~eP~wl~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~  159 (556)
                      +.+++ +++|  +|+|++.+..+++++|++++++++||+.+.||.||.++|++|++.|.++++|+|.+.+++.|++.++.
T Consensus        12 ~~~~~-~~~~--~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~ep~Wl~~~R~~A~~~~~~~~~P~~~~~~~e~w~~t~i~   88 (485)
T CHL00085         12 LTKLV-NQPY--KYGFSTLIETERLPKGLNEDIVRLISKKKNEPIFLLIFRLKAYKKWKKMKEPDWAFLKYPEIDYQDIS   88 (485)
T ss_pred             hHHHh-cccc--cCCCCCcchhhhccCCCCHHHHHHHHhhhCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhce
Confidence            46667 7889  99999998889999999999999999999999999999999999999999999988778888888888


Q ss_pred             cccCCCCCCCCCCCCCCCHHHHHHHHhcCCCchhcccccceeeceEEeccchhhccccccccCCeEEechHHHHHhCcHH
Q 008725          160 YYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDL  239 (556)
Q Consensus       160 ~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~V~g~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdl  239 (556)
                      +|+.|.......+|++++.++.++++.+|||+.++.++....++.+|++..++..++++|.++||+|++|++|+++||++
T Consensus        89 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~~Gv~~~~l~~a~~~~~~l  168 (485)
T CHL00085         89 YYSAPKLKKKLNSLDEVDPELLDTFEKLGISLNEQKRLANVAVDAVFDSVSIGTTFKEELAKAGVIFCSISEAIQKYPEL  168 (485)
T ss_pred             eeeccccccccCChhhCCHHHHHHHHhcCCCHHHHhhhcCCceEEEEccEEEEeeccchhhcCCeEEEcHHHHHhhhHHH
Confidence            88777543223578899999999999999999998877777778889988888888889999999999999999999999


Q ss_pred             HHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEEEEeecCCcceeeeEEEEECCCCeEEEEeceecCCC
Q 008725          240 VRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSY  319 (556)
Q Consensus       240 v~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~f~~~~~~~~q~~r~lIiveegA~v~~iE~~~~~~~  319 (556)
                      +++||++++++++++|+|||+|+|++|+|||||+|+++|+||+++|.+++.+..+++|++|++|+||+++|||+|.++.+
T Consensus       169 v~~yl~~~~~~~~~~f~aLn~A~~~~G~fi~Vp~gv~~~~pl~~~~~~~~~~~~~~~r~lIi~eega~~~iiE~~~s~~~  248 (485)
T CHL00085        169 IKKYLGSVVPIGDNYFAALNSAVFSDGSFCYIPKDTKCPLELSTYFRINNEESGQFERTLIIAEENSYVSYLEGCTAPQY  248 (485)
T ss_pred             HHHHhcccCCCCchHHHHHHHHHcCCeEEEEECCCCcceEEEEEEEeecCCccceeeeEEEEECCCCEEEEEEEeccCCC
Confidence            99999998888899999999999999999999999999999999999876667899999999999999999999999755


Q ss_pred             CCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCC
Q 008725          320 DRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDD  399 (556)
Q Consensus       320 ~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~g  399 (556)
                      ...+||++|+||++++||+|+|++||+|+.+...+.++++||.++|+++++++|+++|.++++|++++|+++.+.|.|+|
T Consensus       249 ~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~~~~L~G~~  328 (485)
T CHL00085        249 DTNQLHAAVVELIALENAEIKYSTVQNWYAGDENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYPSCILIGDN  328 (485)
T ss_pred             CccceEEEEEEEEECCCCEEEEEEEEeecCccccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeeceEEEecCC
Confidence            57789999999999999999999999997666666678999999999888999999999999999999999999999999


Q ss_pred             eEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceec
Q 008725          400 TVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANT  479 (556)
Q Consensus       400 A~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T  479 (556)
                      |+++++|++++.++|++|++++|+|.||||+|++++|||+.|+|+++|||+|+|.++|++|+|+|+|++||||++|+++|
T Consensus       329 a~~~~~~i~l~~~~Q~~D~~t~v~h~~p~t~S~~~~k~Il~d~s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~a~~~t  408 (485)
T CHL00085        329 SQGEFYSVALTNNYQQADTGTKMIHIGKNTKSRIISKGISAGKSKNSYRGLVKIGPKALNSRNYSQCDSLLIGNKSQANT  408 (485)
T ss_pred             cEEEEEEEEEccCCEEEEeeEEEEEcCCCcEEEEEEEEEECCCCEEEEEEEEEECCCCCCCccceeeceEEEcCCCcEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHhcCCCchHHHHHHHHHHhhccccCC
Q 008725          480 YPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG  556 (556)
Q Consensus       480 ~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~LIV~GFl~~vi~~lp~e~~~e~~~li~~~l~~~vg  556 (556)
                      +|+|||++|||+|+|||||||||+|||||||||||++++|++|||.||+.+++++||+|.++++.++|+.||+|+||
T Consensus       409 ~P~LeI~adDV~~sHgAtvG~ideeqLFYL~SRGi~e~eA~~Llv~gF~~evi~~ip~e~~~~l~~~i~~~l~~~~~  485 (485)
T CHL00085        409 FPYIQVQNSTAKIEHEASTSKIGEEQLFYFLQRGINLEEAISLLISGFCKDVFNKLPMEFALEADRLLSLKLEGSVG  485 (485)
T ss_pred             cceEEEecCCeeEEEeeccCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccC
Confidence            99999999999999999999999999999999999999999999999999999999999888999999999999998

>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional	Back alignment and domain information

>TIGR01980 sufB FeS assembly protein SufB	Back alignment and domain information

>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional	Back alignment and domain information

>TIGR01981 sufD FeS assembly protein SufD, group 1	Back alignment and domain information

>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron	Back alignment and domain information

>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron	Back alignment and domain information

>TIGR01981 sufD FeS assembly protein SufD, group 1	Back alignment and domain information

>TIGR01980 sufB FeS assembly protein SufB	Back alignment and domain information

>CHL00085 ycf24 putative ABC transporter	Back alignment and domain information

>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional	Back alignment and domain information

>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional	Back alignment and domain information

>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		556
4dn7_A		429	Crystal Structure Of Putative Abc Transporter, Atp-		3e-29
2zu0_A		423	Crystal Structure Of Sufc-Sufd Complex Involved In		2e-11
1vh4_A		435	Crystal Structure Of A Stabilizer Of Iron Transport		2e-11

>pdb|4DN7|A Chain A, Crystal Structure Of Putative Abc Transporter, Atp-Binding Protein From Methanosarcina Mazei Go1 Length = 429

Back alignment and structure

Iteration: 1

Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/405 (23%), Positives = 181/405 (44%), Gaps = 38/405 (9%) Query: 154 NFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIAT 213 +F+ Y K + L D E + ++GV +E+ R + V LD+ A Sbjct: 47 DFELEKYEEGSKVSKPIEDLQSLDEESKKTLLQVGVIPSEEGRSGSFLV---LDN---AV 100 Query: 214 THRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPK 273 +H TL++ V S +A ++ + ++ Y ++V + + Y A +DG F +P Sbjct: 101 SH-STLKDKNVELXSTHKAXEKY-EWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPA 158 Query: 274 NTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYC 333 K P+ T + + + Q +I+ +EG+ ++ + GCT LH + E Y Sbjct: 159 GKKTSXPVQTCLXLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEXYI 218 Query: 334 AEGAEIKYSTVQNW----------YAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETG 383 +G + ++ + NW EEG + N++ + + RS V+T Sbjct: 219 KKGGTLNFTXIHNWAEQIGVRPRTVVSVEEGGTYVSNYICLKPV----RS------VQT- 267 Query: 384 SAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNS 443 YP+V LEG+ V ++A+ + + D G+K I TR+ +IS+ I++G Sbjct: 268 ------YPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITIGG- 320 Query: 444 RNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGE 503 R RG + A+ A+ +C ++L D + P ++ + HEA+ KI + Sbjct: 321 RLIARG--EXIGNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAK 378 Query: 504 DQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMS 548 DQ+ Y RG+ ++A+ +I GF +P+E E+ ++ Sbjct: 379 DQVEYLXARGLTEDEAVGXIIRGFLDVGIRGIPEELKEEIENTIA 423

PyMOL of 4dn7

>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 423

Back alignment and structure

>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter Length = 435

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		556
4dn7_A		429	ABC transporter, ATP-binding protein; structural g	0.0
1vh4_A		435	SUFD protein; structural genomics, protein binding	5e-51
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze} Length = 429	Back alignment and structure

 Score =  662 bits (1710), Expect = 0.0
 Identities = 98/456 (21%), Positives = 189/456 (41%), Gaps = 30/456 (6%)

Query: 98  DIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQD 157
                +    L  E ++   S++ E    L+ R     +    K+  +        +F+ 
Sbjct: 3   HHHHHSSGVDLGTENLY-FQSMQTEQ-VSLKKRA----ESAAEKKAAFG------EDFEL 50

Query: 158 MCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRK 217
             Y    K    +  L   D E  +   ++GV  +E+ R        VLD+    +T   
Sbjct: 51  EKYEEGSKVSKPIEDLQSLDEESKKTLLQVGVIPSEEGRSG---SFLVLDNAVSHST--- 104

Query: 218 TLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKC 277
            L++  V   S  +A+ ++ + ++ Y  ++V  + + Y A      +DG F  +P   K 
Sbjct: 105 -LKDKNVELMSTHKAMEKY-EWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKT 162

Query: 278 PMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGA 337
            MP+ T   + + +  Q    +I+ +EG+ ++ + GCT        LH  + E+Y  +G 
Sbjct: 163 SMPVQTCLMLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGG 222

Query: 338 EIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEG 397
            + ++ + NW          I              + +S             YP+V LEG
Sbjct: 223 TLNFTMIHNWA-------EQIGVRPRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEG 275

Query: 398 DDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKA 457
           +  V    ++A+ +   + D G+K I     TR+ +IS+ I++G  R   RG  ++   A
Sbjct: 276 EGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITIG-GRLIARG--EMIGNA 332

Query: 458 ENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYE 517
           + A+   +C  ++L D  +    P ++       + HEA+  KI +DQ+ Y   RG+  +
Sbjct: 333 KGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLMARGLTED 392

Query: 518 KAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEG 553
           +A+  +I GF       +P+E   E+   ++    G
Sbjct: 393 EAVGMIIRGFLDVGIRGIPEELKEEIENTIAQTALG 428

PyMOL of 4dn7

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A* Length = 435	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		556
1vh4_A		435	SUFD protein; structural genomics, protein binding	100.0
4dn7_A		429	ABC transporter, ATP-binding protein; structural g	100.0
1vh4_A		435	SUFD protein; structural genomics, protein binding	97.79
4dn7_A		429	ABC transporter, ATP-binding protein; structural g	97.68

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*	Back alignment and structure

Probab=100.00  E-value=1.9e-90  Score=745.26  Aligned_cols=396  Identities=17%  Similarity=0.223  Sum_probs=353.6

Q ss_pred             CchHHHHHHHHHHHHhHhCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCHHHHHHHHhcCCCchhccccccee
Q 008725          122 EPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVA  201 (556)
Q Consensus       122 eP~wl~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~  201 (556)
                      ...||.++|++||+.|.++|+|+|+.++|+++|+..+.   .+..... .. +.+|+++    +.+.+| .+..  +.|+
T Consensus        23 ~~~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~---~~~~~~~-~~-~~~~~~i----~~~~~~-~~~~--~~v~   90 (435)
T 1vh4_A           23 EGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLI---NSQFVSI-AG-EISPQQR----DALALT-LDSV--RLVF   90 (435)
T ss_dssp             ---CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHH---TSCEECC-CC-CCCHHHH----HHHCCC-CCSE--EEEE
T ss_pred             ccchhHHHHHHHHHHHHhCCCCCCCccccccCchHHhh---ccccccc-cc-ccChhHH----hhhcCc-cCce--EEEE
Confidence            34789999999999999999999999999999988654   3332221 12 3344443    344465 2333  4788


Q ss_pred             eceEEeccchhhccccccccCCeEEechHHHHHhCcHHHHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeE
Q 008725          202 VDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPI  281 (556)
Q Consensus       202 V~g~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdlv~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl  281 (556)
                      |||+|++.     +++++.++||+|+++++         ++||++++++  |+|+|||+|+|++|+|||||+|++++.||
T Consensus        91 v~g~~~~~-----ls~~~~~~Gv~~~~~~~---------~~~~~~~~~~--~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi  154 (435)
T 1vh4_A           91 VDGRYVPA-----LSDATEGSGYEVSINDD---------RQGLPDAIQA--EVFLHLTESLAQSVTHIAVKRGQRPAKPL  154 (435)
T ss_dssp             ETTEECGG-----GSCCCTTSSCEEEEESC---------CTTCCCCSSC--CHHHHHHHHHCSCEEEEEECTTCCCSSCE
T ss_pred             ECCEEeee-----ccccccCCCeEEEecch---------hhhhhcccCc--hHHHHHHHHhcCCcEEEEECCCCEecccE
Confidence            99999874     23346689999999976         6899998876  89999999999999999999999999999


Q ss_pred             EEEEEeecCC----cceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCc
Q 008725          282 STYFRINAME----TGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGG  357 (556)
Q Consensus       282 ~~~f~~~~~~----~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~  357 (556)
                      +++|+.++.+    ..+++|++|++|+||+++|||+|.++. ...++|++++||++++||+|+|+++|+|+.+       
T Consensus       155 ~l~~~~~~~~~~~~~~~~~r~lIi~eegs~v~iie~~~~~~-~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~-------  226 (435)
T 1vh4_A          155 LLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENPL-------  226 (435)
T ss_dssp             EEEEEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCTT-------
T ss_pred             EEEEEecCCcccccceeeeEEEEEECCCCEEEEEEEeccCC-cccceeeeEEEEEECCCCEEEEEEEEecCCC-------
Confidence            9999876544    679999999999999999999999985 3578999999999999999999999999653       


Q ss_pred             eEEEEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEE
Q 008725          358 IYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKG  437 (556)
Q Consensus       358 v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~Kg  437 (556)
                      ++++.++| ++++++|+++|+.+.+|++++|+++++.|.|+||.++++|+++++++|++|++++|+|.||+|+|++++||
T Consensus       227 ~~~~~~~~-~~~~~~a~~~~~~~~~G~~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kg  305 (435)
T 1vh4_A          227 SHHFAHND-LLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKT  305 (435)
T ss_dssp             CEEEEEEE-EEECTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             eEEEEEEE-EEECCCCEEEEEEEEECCceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEE
Confidence            68999988 58999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHH
Q 008725          438 ISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYE  517 (556)
Q Consensus       438 I~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIsee  517 (556)
                      |++|+|+++|||+|+|.++|++|+++|+|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||+++
T Consensus       306 il~d~s~~vf~G~i~v~~~A~~t~a~~~~~~LlLs~~a~~~t~P~LeI~~dDV~~~H~AtvG~ideeqLFYL~SRGi~e~  385 (435)
T 1vh4_A          306 IVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQ  385 (435)
T ss_dssp             EECTTCEEEEEEEEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHH
T ss_pred             EEcCCCeEEEEEEEEEecCCCCCeeEEEeeeEEccCCCcEEeeeeEEEEcCCEEEEeeeecCCCCHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHhcCCCchHHH-HHHHHHHhhcccc
Q 008725          518 KAMAAMISGFCRDVFNELPDEFGA-EVNQLMSLKLEGS  554 (556)
Q Consensus       518 eA~~LIV~GFl~~vi~~lp~e~~~-e~~~li~~~l~~~  554 (556)
                      ||++|||+||+.+++++||+|.++ ++.++|+.+|++.
T Consensus       386 eA~~Liv~gF~~~vi~~i~~e~l~~~l~~~i~~~l~~~  423 (435)
T 1vh4_A          386 DAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGG  423 (435)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999765 5999999999864

PyMOL of 1vh4

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}	Back alignment and structure

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*	Back alignment and structure

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		556
d1vh4a_		413	b.80.6.1 (A:) Stabilizer of iron transporter SufD	2e-43

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} Length = 413	Back information, alignment and structure


class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

 Score =  157 bits (397), Expect = 2e-43
 Identities = 76/445 (17%), Positives = 148/445 (33%), Gaps = 52/445 (11%)

Query: 119 LKEEPAWMLEYRLSAFEKFLKM-----KEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSL 173
            + E            ++ L+      K  NW   +Y P+                ++  
Sbjct: 10  FEAEGTKRSPQAQQHLQQLLRTGLPTRKHENW---KYTPLE--------GLINSQFVSIA 58

Query: 174 DEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAI 233
            E  P+     D L + L +  RL  V VD                 E      SI++  
Sbjct: 59  GEISPQQR---DALALTL-DSVRL--VFVDGRYVP------ALSDATEGSGYEVSINDDR 106

Query: 234 REHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETG 293
           +  PD +          +   +  L  ++    +   + +  +   P+        +   
Sbjct: 107 QGLPDAI----------QAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGE 156

Query: 294 Q----FERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYA 349
           +      R  +   EG+    +E   +   D      A   +  A  A +++  +     
Sbjct: 157 EVNTAHYRHHLDLAEGAEATVIEHFVSL-NDARHFTGARFTINVAANAHLQHIKLAFENP 215

Query: 350 GDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVAL 409
                     +      L   + +         G A+     S  L G+++     S+A+
Sbjct: 216 L--------SHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAM 267

Query: 410 TNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSM 469
               +  DT T + H      SR + K I     R  + GL+ V   A         +++
Sbjct: 268 PVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNL 327

Query: 470 LLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCR 529
           L+G  A  +T P +++     +  H A+  +I ++Q+FY + RGI+ + A   +I  F  
Sbjct: 328 LMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAA 387

Query: 530 DVFNELPDE-FGAEVNQLMSLKLEG 553
           ++   L DE    +V   +  +L G
Sbjct: 388 ELTEALRDEGLKQQVLARIGQRLPG 412

PyMOL of d1vh4a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		556
d1vh4a_		413	Stabilizer of iron transporter SufD {Escherichia c	100.0
d1vh4a_		413	Stabilizer of iron transporter SufD {Escherichia c	97.5

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-75  Score=623.75  Aligned_cols=392  Identities=17%  Similarity=0.222  Sum_probs=334.9

Q ss_pred             HHHHHHHHHHHHhHhCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCHHHHHHHHhcCCCchhcccccceeece
Q 008725          125 WMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDA  204 (556)
Q Consensus       125 wl~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~V~g  204 (556)
                      |..+.|++||+.|+++|||+.|.++|+++|+..+...   .....   ..+..+.....+ .+.+     ...++||+||
T Consensus        16 ~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~---~~~~~---~~~~~~~~~~~~-~~~~-----~~~~ivfvnG   83 (413)
T d1vh4a_          16 KRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINS---QFVSI---AGEISPQQRDAL-ALTL-----DSVRLVFVDG   83 (413)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTS---CEECC---CCCCCHHHHHHH-CCCC-----CSEEEEEETT
T ss_pred             cchHHHHHHHHHHHHcCCCCCCCcCccCCCHHHHhcc---CCccc---CCccCchhhccc-cccc-----CceEEEEECC
Confidence            3456699999999999999999999999999876421   11000   012333332211 1111     2346899999


Q ss_pred             EEeccchhhccccccccCCeEEechHHHHHhCcHHHHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEE
Q 008725          205 VLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTY  284 (556)
Q Consensus       205 ~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdlv~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~  284 (556)
                      +|++...     +...+.|+.+....+... .++          ....+.|.+||.|++++|++|+||+|++++.||+++
T Consensus        84 ~~~~~ls-----~~~~~~~i~i~~~~~~~~-~~~----------~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~  147 (413)
T d1vh4a_          84 RYVPALS-----DATEGSGYEVSINDDRQG-LPD----------AIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLM  147 (413)
T ss_dssp             EECGGGS-----CCCTTSSCEEEEESCCTT-CCC----------CSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEE
T ss_pred             EEchhcc-----cCcccCCeEEechHhhhh-ccc----------chhhhhhhhhhhhccccceeEeeccceEecccceee
Confidence            9987421     223467887765554321 111          235689999999999999999999999999999998


Q ss_pred             EEeecC----CcceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEE
Q 008725          285 FRINAM----ETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYN  360 (556)
Q Consensus       285 f~~~~~----~~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n  360 (556)
                      |..++.    ....++|++|++++||+++++|.|.++. ...+|++.++||++++||+|+|+.+|+|..+       .++
T Consensus       148 ~~~~~~~~~~~~~~~~r~~I~v~ena~v~iiE~~~~~~-~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~-------~~~  219 (413)
T d1vh4a_         148 HITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENPL-------SHH  219 (413)
T ss_dssp             EEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCTT-------CEE
T ss_pred             Eeecccccccccccceeeeeeecccchhhhhhhccccc-cccceecceeEEEecccceeeehhhhhhccc-------ccc
Confidence            876542    1357899999999999999999998865 4668999999999999999999999999754       567


Q ss_pred             EEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEe
Q 008725          361 FVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISV  440 (556)
Q Consensus       361 ~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~  440 (556)
                      +.+.+ +.++++|.++|+.+.+|+.++|.+..+.|.|+||.++++|++++.++|++|+++.|+|.+|+|+|++++|||+.
T Consensus       220 ~~~~~-~~~~~~s~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~  298 (413)
T d1vh4a_         220 FAHND-LLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS  298 (413)
T ss_dssp             EEEEE-EEECTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC
T ss_pred             cceee-eecccccceeeeecccccchhhccchhhccccccccceeeccccccchhhhhhhhhhccccccchhhhhhcccc
Confidence            77666 47889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHH
Q 008725          441 GNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAM  520 (556)
Q Consensus       441 d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~  520 (556)
                      |+|+++|+|+|+|.++|++|+|+|.|++||||++|+++|+|.|||++|||+|+||||||+||+|||||||||||++++|+
T Consensus       299 d~s~~vf~G~i~V~~~A~~t~a~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~  378 (413)
T d1vh4a_         299 DKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQ  378 (413)
T ss_dssp             TTCEEEEEEEEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHH
T ss_pred             ccceeEEeeeecccccchhhhhHHhhhhhcccCCceEEecceEEEecCCeeEEeeeeccCCCHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHhcCCCchHH-HHHHHHHHhhccc
Q 008725          521 AAMISGFCRDVFNELPDEFG-AEVNQLMSLKLEG  553 (556)
Q Consensus       521 ~LIV~GFl~~vi~~lp~e~~-~e~~~li~~~l~~  553 (556)
                      +|||+||+.+++++||++.+ ..+.++|+.||+|
T Consensus       379 ~ll~~gF~~~~~~~~~~~~~~~~~~~~i~~~l~~  412 (413)
T d1vh4a_         379 QMIIYAFAAELTEALRDEGLKQQVLARIGQRLPG  412 (413)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcC
Confidence            99999999999999999866 5599999999987

PyMOL of d1vh4a_

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure