Citrus Sinensis ID: 008730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------
Protein Sequence
MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRMFQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccEEEEccccccHHHHHHHHHHccccccccccEEccccccccccHHHHHHHHHHHHHcccccEEEcccccccccccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHcccEEEEEccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEcccccccccEEEcccEEEEEEccccccccccccEEEEEEEcccccccEEEEEccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEEcEccccHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHHHHccccEEEcccccccHHHHccccHHHHHHHHccHHHHHHHHHHHcccccEEEEcccEEEEcccccccccccHHHHHccccccccccccHHHHHHHcEEcccccEEEccccccEEEcHHHHHHHHHHHcccEEEEccccccccEEEEccccEEEEEccccHHHcccccEEEEEEEcccccccEEEEEEccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpnmetenssvSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASkaieidprypkgyyrrGAAYLAMGKFKEALKDFQQvkklspndpdaAQKVKECEKAVKKLKFEEaiavpeserhsvadsidyqsigmspsssfvSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYwwgscsgsdvftksrklelevepqysgariegdVITLDFVKKMMDdfknqkclhKRYAFQIVLQTREMLRAlpslvdidipdgkhftvcgdvHGQFYDLLNIfelnglpseenpylfngdfvdrgsFSVEVILTLFAFKcmcpsaiylsrgnhesksmnkiygfeGEVRSKLSETFVELFAEVFCclplahvlnQKVFVVHGGlfsvdgvklsdiktidrfceppeeglmcellwsdpqplpgrgpskrgvglsfgadvTKRFLQDNSLDLVVRshevkdegyeiehdgklitvfsapnycdqmgnkgafirfeaptlkpnivtfaavphpdvkpmayANNFLRMFQ
Flexible Loop (DISEMBL)
mpnmetenssvsrAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQdaskaieidprypkGYYRRGAAYLAMGKFKEALKDFQQVKKlspndpdaaQKVKECEKAVKKLKFeeaiavpeserhsVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELevepqysgariegdVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYlsrgnhesksMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFsvdgvklsdiKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVkdegyeiehdgklITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTfaavphpdvkPMAYANNFLRMFQ
Low Complexity Region (SEG)
MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFvstqaailaatatvvvavvvmvwpavattvagmvvavLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRMFQ
Disordered region (IsUnstruct)
***********************AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF***********************************************************FVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH***SMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS**************VGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFL****
Disordered Region (DISOPRED)
*****************KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGM**************AATATVVVAVVVMV***********VVAVLMILGAYWWG**********************SGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP*AYANNFLRMFQ
Disordered Region (DISEMBL)
*************AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN*********ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRMFQ
Disordered Region (DISPRO)
**********VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRMFQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRMFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	556	2.2.26 [Sep-21-2011]
Q84K11	556	Serine/threonine-protein	N/A	no	0.996	0.996	0.836	0.0
Q84XU2	538	Serine/threonine-protein	yes	no	0.964	0.996	0.803	0.0
P53041	499	Serine/threonine-protein	yes	no	0.586	0.653	0.590	1e-119
P53042	499	Serine/threonine-protein	yes	no	0.586	0.653	0.590	1e-118
Q60676	499	Serine/threonine-protein	yes	no	0.586	0.653	0.590	1e-118
O43049	473	Serine/threonine-protein	yes	no	0.582	0.684	0.524	1e-101
P53043	513	Serine/threonine-protein	yes	no	0.579	0.627	0.463	1e-80
Q05681	558	Serine/threonine-protein	N/A	no	0.528	0.526	0.392	3e-60
Q4WUR1	534	Serine/threonine-protein	no	no	0.530	0.552	0.4	1e-59
P23880	322	Serine/threonine-protein	no	no	0.433	0.748	0.455	1e-58

>sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/556 (83%), Positives = 503/556 (90%), Gaps = 2/556 (0%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MP ME ENS+ SRAEELK LANEAF+  KYSQAIDLY+QAIELN +NAVYYANRAFAHTK
Sbjct: 1   MPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTK 60

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           LEEYGSAIQD ++AIEIDPRY KGYYRRGAAYLAMGKFK+ALKDFQQVKKL PNDPDA +
Sbjct: 61  LEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATK 120

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQA-AILAATATV 179
           K+KECEKAV KLKFEEAI+VPES+R SVADSIDY+S+G  P SS+V T+  A+ AA A +
Sbjct: 121 KLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVGSGPGSSYVPTKTTAVSAAAALM 180

Query: 180 VVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARI 239
            V VV M   A     A    A+L++L  + WG CS    FTKSR LELEVEPQY+GARI
Sbjct: 181 GVLVVYMGTKAATMVAAAASAALLVVLITFLWGRCS-DGFFTKSRTLELEVEPQYAGARI 239

Query: 240 EGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCG 299
           EGDV+TLDFVKKM+DDFKNQK LHKRYA+QIVLQTREMLRALPSLVDI +P+GKHFTVCG
Sbjct: 240 EGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCG 299

Query: 300 DVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 359
           DVHGQFYDLLNIFELNGLPSE+NPYLFNGDFVDRGSFS+EVILTLFAFKCMCPSAI+L+R
Sbjct: 300 DVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLAR 359

Query: 360 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV 419
           GNHESKSMNKIYGFEGEVRSKLSE FVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGV
Sbjct: 360 GNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGV 419

Query: 420 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLD 479
           KLSDI+ IDRFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSFG DVTKRFLQ+N+LD
Sbjct: 420 KLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLD 479

Query: 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPH 539
           LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP +KPNIVTF+AVPH
Sbjct: 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPH 539

Query: 540 PDVKPMAYANNFLRMF 555
           PDVKPMAYANNFLRMF
Sbjct: 540 PDVKPMAYANNFLRMF 555

Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses (By similarity). Can use para-nitrophenylphosphate (pNPP) and phosphorylated casein as substrate at pH 7.5 and 5.0.
Solanum lycopersicum (taxid: 4081)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q84XU2|PPP5_ARATH Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/555 (80%), Positives = 487/555 (87%), Gaps = 19/555 (3%)

Query: 4   MET--ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
           MET  ENS VSRAEE K+ ANEAF+  KYS AIDLY++AIELNS NAVY+ANRAFAHTKL
Sbjct: 1   METKNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKL 60

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
           EEYGSAIQDASKAIE+D RY KGYYRRGAAYLAMGKFK+ALKDFQQVK+LSPNDPDA +K
Sbjct: 61  EEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRK 120

Query: 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVV 181
           +KECEKAV KLKFEEAI+VP SER SVA+SID+ +IG  P SS + T+ A+ A  A V+V
Sbjct: 121 LKECEKAVMKLKFEEAISVPVSERRSVAESIDFHTIGNKPRSSSMPTKTALAAVVAAVMV 180

Query: 182 AVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEG 241
             V       ATT   MV+ V ++LG +WWGS SG            +VEPQYSGARIEG
Sbjct: 181 VAV----RGFATTEILMVL-VSVVLGTFWWGSFSG------------KVEPQYSGARIEG 223

Query: 242 DVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDV 301
           + +TLDFVK MM+DFKNQK LHKRYA+QIVLQTR++L ALPSLVDI +P GKH TVCGDV
Sbjct: 224 EEVTLDFVKTMMEDFKNQKTLHKRYAYQIVLQTRQILLALPSLVDISVPHGKHITVCGDV 283

Query: 302 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGN 361
           HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE+ILTLFAFKCMCPS+IYL+RGN
Sbjct: 284 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEIILTLFAFKCMCPSSIYLARGN 343

Query: 362 HESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKL 421
           HESKSMNKIYGFEGEVRSKLSE FV+LFAEVFC LPLAHV+N KVFVVHGGLFSVDGVKL
Sbjct: 344 HESKSMNKIYGFEGEVRSKLSEKFVDLFAEVFCYLPLAHVINGKVFVVHGGLFSVDGVKL 403

Query: 422 SDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLV 481
           SDI+ IDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFG DVTKRFLQDN+LDL+
Sbjct: 404 SDIRAIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLQDNNLDLL 463

Query: 482 VRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 541
           VRSHEVKDEGYE+EHDGKLITVFSAPNYCDQMGNKGAFIRFEAP +KPNIVTF+AVPHPD
Sbjct: 464 VRSHEVKDEGYEVEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPD 523

Query: 542 VKPMAYANNFLRMFQ 556
           VKPMAYANNFLRMF 
Sbjct: 524 VKPMAYANNFLRMFN 538

Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses, probably by enhancing their stability and their binding affinity for light signal transducers such as NDPK2. Can use para-nitrophenylphosphate (pNPP) as substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P53041|PPP5_HUMAN Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 250/327 (76%)

Query: 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
           + +E +YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+ 
Sbjct: 170 MTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVET 229

Query: 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
            + + +  TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF F
Sbjct: 230 TLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGF 289

Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           K + P   +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV 
Sbjct: 290 KLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVL 349

Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           ++HGGLFS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG D
Sbjct: 350 IMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPD 409

Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 527
           VTK FL++N+LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L
Sbjct: 410 VTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDL 469

Query: 528 KPNIVTFAAVPHPDVKPMAYANNFLRM 554
           +P    F AVPHP+VKPMAYAN  L++
Sbjct: 470 RPQFHQFTAVPHPNVKPMAYANTLLQL 496

May play a role in the regulation of RNA biogenesis and/or mitosis. In vitro, dephosphorylates serine residues of skeletal muscle phosphorylase and histone H1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P53042|PPP5_RAT Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1

 Score =  427 bits (1098), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 248/327 (75%)

Query: 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
           + +E +YSG ++E   +T+ F+K +M  +K+QK LH++ A+QI++Q +E+L  L +LV+ 
Sbjct: 170 MTIEDEYSGPKLEDGKVTITFMKDLMQWYKDQKKLHRKCAYQILVQVKEVLCKLSTLVET 229

Query: 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
            + + +  TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF F
Sbjct: 230 TLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGF 289

Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           K + P   +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV 
Sbjct: 290 KLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVL 349

Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           ++HGGLFS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG D
Sbjct: 350 IMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPD 409

Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 527
           VTK FL++N LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L
Sbjct: 410 VTKAFLEENQLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDL 469

Query: 528 KPNIVTFAAVPHPDVKPMAYANNFLRM 554
           +P    F AVPHP+VKPMAYAN  L++
Sbjct: 470 RPQFHQFTAVPHPNVKPMAYANTLLQL 496

May play a role in the regulation of RNA biogenesis and/or mitosis.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q60676|PPP5_MOUSE Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2

 Score =  427 bits (1098), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 248/327 (75%)

Query: 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
           + +E +YSG ++E   +T+ F+K +M  +K+QK LH++ A+QI++Q +E+L  L +LV+ 
Sbjct: 170 MTIEDEYSGPKLEDGKVTITFMKDLMQWYKDQKKLHRKCAYQILVQVKEVLCKLSTLVET 229

Query: 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
            + + +  TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF F
Sbjct: 230 TLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGF 289

Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           K + P   +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV 
Sbjct: 290 KLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVL 349

Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           ++HGGLFS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG D
Sbjct: 350 IMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPD 409

Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 527
           VTK FL++N LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L
Sbjct: 410 VTKAFLEENQLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDL 469

Query: 528 KPNIVTFAAVPHPDVKPMAYANNFLRM 554
           +P    F AVPHP+VKPMAYAN  L++
Sbjct: 470 RPQFHQFTAVPHPNVKPMAYANTLLQL 496

May play a role in the regulation of RNA biogenesis and/or mitosis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|O43049|PPT1_SCHPO Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppt1 PE=3 SV=2

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/328 (52%), Positives = 230/328 (70%), Gaps = 4/328 (1%)

Query: 227 ELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVD 286
           ++++   Y G  +E   IT +FV+ M + F   K L  ++A+ I+   +E+L   PSL+D
Sbjct: 145 DMDIPSDYDGVILEKQ-ITKEFVEDMKERFCQGKKLPLKFAYSILRDLKELLEKTPSLID 203

Query: 287 IDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 346
           I +   +   +CGD HGQ++DLLNIF+L+G PS  N YLFNGDFVDRGS+S EV  TL+A
Sbjct: 204 IPVKGDETLVICGDTHGQYFDLLNIFKLHGPPSPTNKYLFNGDFVDRGSWSTEVAFTLYA 263

Query: 347 FKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKV 406
           +K + P A++++RGNHE+  MNK+YGFEGE RSK +E    +F+E F  LPL  +++   
Sbjct: 264 YKLLYPDAVFINRGNHETDDMNKVYGFEGECRSKYNERTFNIFSETFSLLPLGSLISDSY 323

Query: 407 FVVHGGLFSVDGVKLSDIKTIDRFC--EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF 464
            VVHGGLFS D V L  ++ IDRF   +P + GLM E+LW+DPQP PGRGPSKRGVGL F
Sbjct: 324 LVVHGGLFSDDNVTLDQLRNIDRFSKKQPGQSGLMMEMLWTDPQPAPGRGPSKRGVGLQF 383

Query: 465 GADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEA 524
           G DV+KRF + N L  V+RSHEV+D+GYE+EHDG  ITVFSAPNYCD  GN GA I+ + 
Sbjct: 384 GPDVSKRFCEANGLKAVIRSHEVRDQGYEVEHDGYCITVFSAPNYCDSTGNLGAVIKVKE 443

Query: 525 PTLKPNIVTFAAVPHPDVKPMAYANNFL 552
             ++ +   F AVPHP+++PMAYAN  L
Sbjct: 444 -DMELDFHQFEAVPHPNIRPMAYANGLL 470

Protein phosphatase that specifically binds to and dephosphorylates the molecular chaperone Hsp90. Dephosphorylation positively regulates the Hsp90 chaperone machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P53043|PPT1_YEAST Serine/threonine-protein phosphatase T OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PPT1 PE=1 SV=1

 Score =  301 bits (770), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/343 (46%), Positives = 213/343 (62%), Gaps = 21/343 (6%)

Query: 225 KLELEV----EPQYSGARIEGDVITLDFVKKMMDD-FKNQKCLHKRYAFQIVLQTREMLR 279
           KLE E     +  + GA+I+   ++ +F+ KM++D F   K L K+Y   I+     + R
Sbjct: 169 KLEFEQLYDDKNAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFR 226

Query: 280 ALPSLVDID---IPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF 336
             PS+V+++    PD K  +VCGD HGQFYD+LN+F   G    ++ YLFNGDFVDRGS+
Sbjct: 227 QEPSMVELENNSTPDVK-ISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSW 285

Query: 337 SVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCL 396
           S EV L  +  K + P+  +L+RGNHES +MNKIYGFE E + K S+    +FA+ F  L
Sbjct: 286 SCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESL 345

Query: 397 PLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPS 456
           PLA ++N    V+HGGL S     LSD K IDRF +PP +G   ELLW+DPQ   G GPS
Sbjct: 346 PLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPS 405

Query: 457 KRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNK 516
           +RG+G +FG D+T RFL++N L  + RSHE++  G + E  GKL+TVFSAPNYCD  GN 
Sbjct: 406 QRGLGHAFGPDITDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNL 465

Query: 517 GAFIRF--------EAPTLKPNIV--TFAAVPHPDVKPMAYAN 549
           G  I                 N++  TF AV HPD+KPMAY+N
Sbjct: 466 GGVIHVVPGHGILQAGRNDDQNLIIETFEAVEHPDIKPMAYSN 508

Protein phosphatase that specifically binds to and dephosphorylates the molecular chaperone Hsp90 (HSC82 and HSP82). Dephosphorylation positively regulates the Hsp90 chaperone machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q05681|PP2B_NEUCR Serine/threonine-protein phosphatase 2B catalytic subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cna-1 PE=2 SV=2

 Score =  233 bits (595), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/321 (39%), Positives = 184/321 (57%), Gaps = 27/321 (8%)

Query: 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 308
           ++ +   F  +  L +  A  I+ +  ++LRA P+L+++D P     TVCGDVHGQ+YDL
Sbjct: 81  IQFLKQHFYREGRLTEEQALWIIREGTKLLRAEPNLLEMDAP----ITVCGDVHGQYYDL 136

Query: 309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368
           + +FE+ G P+E   YLF GD+VDRG FS+E +L L+A K   P  ++L RGNHE + + 
Sbjct: 137 MKLFEVGGDPAETR-YLFLGDYVDRGYFSIECVLYLWALKIHYPKTLWLLRGNHECRHLT 195

Query: 369 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 428
             + F+ E + K SE   E   E FCCLPLA V+N++   +HGGL S +   L DI+ ID
Sbjct: 196 DYFTFKLECKHKYSEAIYEACMESFCCLPLAAVMNKQFLCIHGGL-SPELHTLDDIRNID 254

Query: 429 RFCEPPEEGLMCELLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDL 480
           RF EPP +GLMC++LW+DP    G+  +         RG    F       FL+ N+L  
Sbjct: 255 RFREPPTQGLMCDILWADPLEDFGQEKTTDFFVHNHVRGCSYFFSYSAACHFLEKNNLLS 314

Query: 481 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 534
           ++R+HE +D GY +    +      ++T+FSAPNY D   NK A +++E   +  NI  F
Sbjct: 315 IIRAHEAQDAGYRMYRKTRTTGFPSVMTIFSAPNYLDVYNNKAAVLKYENNVM--NIRQF 372

Query: 535 AAVPHPDVKPMAYANNFLRMF 555
              PHP   P     NF+ +F
Sbjct: 373 NCTPHPYWLP-----NFMDVF 388

Calcium-dependent, calmodulin-stimulated protein phosphatase. This subunit may have a role in the calmodulin activation of calcineurin.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q4WUR1|PP2B_ASPFU Serine/threonine-protein phosphatase 2B catalytic subunit OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cnaA PE=3 SV=2

 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 186/325 (57%), Gaps = 30/325 (9%)

Query: 245 TLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQ 304
            L F+K+    F  +  L +  A  I+    ++LR+ P+L+++D P     TVCGDVHGQ
Sbjct: 40  NLQFLKQ---HFYREGRLTEEQALWIIHAGTQILRSEPNLLEMDAP----ITVCGDVHGQ 92

Query: 305 FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 364
           +YDL+ +FE+ G PSE   YLF GD+VDRG FS+E +L L+A K   P++++L RGNHE 
Sbjct: 93  YYDLMKLFEVGGDPSETR-YLFLGDYVDRGYFSIECVLYLWALKIWYPNSLWLLRGNHEC 151

Query: 365 KSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDI 424
           + +   + F+ E + K SE   E   E FC LPLA V+N++   +HGGL S +   L DI
Sbjct: 152 RHLTDYFTFKLECKHKYSERIYEACIESFCALPLAAVMNKQFLCIHGGL-SPELHTLEDI 210

Query: 425 KTIDRFCEPPEEGLMCELLWSDPQPLPGRGP--------SKRGVGLSFGADVTKRFLQDN 476
           K+IDRF EPP  GLMC++LW+DP    G+          S RG    F       FL+ N
Sbjct: 211 KSIDRFREPPTHGLMCDILWADPLEEFGQEKTGDYFVHNSVRGCSYFFSYPAACAFLEKN 270

Query: 477 SLDLVVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPN 530
           +L  ++R+HE +D GY +    +      ++T+FSAPNY D   NK A +++E   +  N
Sbjct: 271 NLLSIIRAHEAQDAGYRMYRKTRTTGFPSVMTIFSAPNYLDVYNNKAAVLKYENNVM--N 328

Query: 531 IVTFAAVPHPDVKPMAYANNFLRMF 555
           I  F   PHP   P     NF+ +F
Sbjct: 329 IRQFNCTPHPYWLP-----NFMDVF 348

Calcium-dependent, calmodulin-stimulated protein phosphatase. This subunit may have a role in the calmodulin activation of calcineurin.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P23880|PP12_SCHPO Serine/threonine-protein phosphatase PP1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sds21 PE=3 SV=1

 Score =  228 bits (580), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/248 (45%), Positives = 162/248 (65%), Gaps = 7/248 (2%)

Query: 274 TREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDR 333
           +R +  + P L++++ P      +CGD+HGQ+ DLL +FE  G P + N YLF GD+VDR
Sbjct: 38  SRSIFLSQPMLLELEAP----LKICGDIHGQYSDLLRLFEYGGYPPDAN-YLFLGDYVDR 92

Query: 334 GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 393
           G  S+EVI  LFA+K   P   +L RGNHE  S+N+IYGF  E + + S    + F + F
Sbjct: 93  GKQSLEVICLLFAYKIKYPENFFLLRGNHEFASINRIYGFYDECKRRYSIKLWKTFTDCF 152

Query: 394 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP-LPG 452
            C+P+A V+++K+F +HGGL S D   L  I+ I R  + P+ GL+C+L+WSDP+  L G
Sbjct: 153 NCMPVAAVIDEKIFCMHGGL-SPDLNSLDQIQRIIRPTDIPDTGLLCDLVWSDPEKDLTG 211

Query: 453 RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 512
            G + RGV  +FGADV  RFLQ + LDL+ R+H+V ++GYE     +L+T+FSAPNYC +
Sbjct: 212 WGENDRGVSYTFGADVVSRFLQKHDLDLICRAHQVVEDGYEFFGKRQLVTIFSAPNYCGE 271

Query: 513 MGNKGAFI 520
             N GA +
Sbjct: 272 FDNVGAMM 279

Essential role in cell cycle control. PP1 is perhaps required for exit from mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	556
75146761	556	RecName: Full=Serine/threonine-protein p	0.996	0.996	0.836	0.0
359485158	553	PREDICTED: serine/threonine-protein phos	0.992	0.998	0.828	0.0
356527007	540	PREDICTED: serine/threonine-protein phos	0.969	0.998	0.817	0.0
356567400	540	PREDICTED: serine/threonine-protein phos	0.969	0.998	0.815	0.0
79324899	538	serine/threonine-protein phosphatase 5 [	0.964	0.996	0.803	0.0
449503730	545	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.980	1.0	0.739	0.0
296086339	466	unnamed protein product [Vitis vinifera]	0.825	0.984	0.796	0.0
224128732	488	predicted protein [Populus trichocarpa]	0.874	0.995	0.640	0.0
255558752	476	protein phosphatase-5, putative [Ricinus	0.591	0.691	0.920	0.0
355329952	485	serine/threonine-protein phosphatase 5 [	0.589	0.676	0.923	0.0

>gi|75146761|sp|Q84K11.1|PPP5_SOLLC RecName: Full=Serine/threonine-protein phosphatase 5; AltName: Full=LePP5 gi|28141004|gb|AAO26213.1| type 5 protein serine/threonine phosphatase 62 kDa isoform [Solanum lycopersicum] gi|28141085|gb|AAO26215.1| type 5 protein serine/threonine phosphatase 62 kDa isoform [Solanum lycopersicum]

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/556 (83%), Positives = 503/556 (90%), Gaps = 2/556 (0%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MP ME ENS+ SRAEELK LANEAF+  KYSQAIDLY+QAIELN +NAVYYANRAFAHTK
Sbjct: 1   MPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTK 60

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           LEEYGSAIQD ++AIEIDPRY KGYYRRGAAYLAMGKFK+ALKDFQQVKKL PNDPDA +
Sbjct: 61  LEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATK 120

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQA-AILAATATV 179
           K+KECEKAV KLKFEEAI+VPES+R SVADSIDY+S+G  P SS+V T+  A+ AA A +
Sbjct: 121 KLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVGSGPGSSYVPTKTTAVSAAAALM 180

Query: 180 VVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARI 239
            V VV M   A     A    A+L++L  + WG CS    FTKSR LELEVEPQY+GARI
Sbjct: 181 GVLVVYMGTKAATMVAAAASAALLVVLITFLWGRCS-DGFFTKSRTLELEVEPQYAGARI 239

Query: 240 EGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCG 299
           EGDV+TLDFVKKM+DDFKNQK LHKRYA+QIVLQTREMLRALPSLVDI +P+GKHFTVCG
Sbjct: 240 EGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCG 299

Query: 300 DVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 359
           DVHGQFYDLLNIFELNGLPSE+NPYLFNGDFVDRGSFS+EVILTLFAFKCMCPSAI+L+R
Sbjct: 300 DVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLAR 359

Query: 360 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV 419
           GNHESKSMNKIYGFEGEVRSKLSE FVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGV
Sbjct: 360 GNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGV 419

Query: 420 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLD 479
           KLSDI+ IDRFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSFG DVTKRFLQ+N+LD
Sbjct: 420 KLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLD 479

Query: 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPH 539
           LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP +KPNIVTF+AVPH
Sbjct: 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPH 539

Query: 540 PDVKPMAYANNFLRMF 555
           PDVKPMAYANNFLRMF
Sbjct: 540 PDVKPMAYANNFLRMF 555

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485158|ref|XP_002280111.2| PREDICTED: serine/threonine-protein phosphatase 5-like [Vitis vinifera]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/555 (82%), Positives = 505/555 (90%), Gaps = 3/555 (0%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MP+ME ENSS  +AEE+K  ANEAF+A KYSQAIDLY++AIEL+SQNAVY+ANRAFAHTK
Sbjct: 1   MPSMEIENSS--QAEEIKLQANEAFKAHKYSQAIDLYTRAIELHSQNAVYWANRAFAHTK 58

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           LEEYGSAIQDASKAIE+D +Y KGYYRRGAAYLAMGKFKEALKDFQQVKK+ PNDPDA +
Sbjct: 59  LEEYGSAIQDASKAIEVDLKYSKGYYRRGAAYLAMGKFKEALKDFQQVKKICPNDPDATK 118

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVV 180
           K+KECEKAV KLKFEEAIAVP SER SVADSID++SIG  P SS ++T    LAA A  +
Sbjct: 119 KLKECEKAVMKLKFEEAIAVPNSERRSVADSIDFRSIGTGPDSSSLTTLVTALAAAAVAM 178

Query: 181 VAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIE 240
           V V+++V  A       +V  V++++GA WWG C+ S VF+KS  + L+VEPQYSGARIE
Sbjct: 179 VVVMLVVGIAATAVATTVVAVVVVVIGACWWGGCT-SGVFSKSHTVNLDVEPQYSGARIE 237

Query: 241 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGD 300
           GDV+TLDFVK+M+DDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI++P+  HFTVCGD
Sbjct: 238 GDVVTLDFVKRMLDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDINVPNNSHFTVCGD 297

Query: 301 VHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRG 360
           VHGQFYDLLNIF+LNGLPSEENPYLFNGDFVDRGSFS+EVILTLFAFKCM PSAIYLSRG
Sbjct: 298 VHGQFYDLLNIFDLNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLSRG 357

Query: 361 NHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 420
           NHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV+N+K+FVVHGGLFSVDGVK
Sbjct: 358 NHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVINEKIFVVHGGLFSVDGVK 417

Query: 421 LSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDL 480
           LSDI+ IDRFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSFG DVTKRFLQ+N+LDL
Sbjct: 418 LSDIRAIDRFCEPPEEGLMCELLWSDPQPYPGRGPSKRGVGLSFGVDVTKRFLQENNLDL 477

Query: 481 VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 540
           VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP LKPNIVTF+AVPHP
Sbjct: 478 VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHP 537

Query: 541 DVKPMAYANNFLRMF 555
           DVKPMAYANNFLRMF
Sbjct: 538 DVKPMAYANNFLRMF 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527007|ref|XP_003532106.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Glycine max]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/552 (81%), Positives = 501/552 (90%), Gaps = 13/552 (2%)

Query: 4   METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE 63
           METE S+VS+AEE K LANEAF A+K+SQAIDLY+QAIELNSQNAVY++NRAFAH +LEE
Sbjct: 1   METEKSNVSKAEEFKLLANEAFNARKFSQAIDLYTQAIELNSQNAVYFSNRAFAHLRLEE 60

Query: 64  YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123
           YGSAIQDA+KAIEIDP+Y KGYYRRGAA+L +GKFKEALKDFQQVKK+ PNDPDA +K+K
Sbjct: 61  YGSAIQDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLK 120

Query: 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAV 183
           ECEKAV KLKFEEAIA PESER S+A+SID+++IG   +SS VST+ AI A T  V+ A 
Sbjct: 121 ECEKAVMKLKFEEAIAAPESERRSIAESIDFRTIGKGRNSS-VSTEVAIAAVTVAVMAAA 179

Query: 184 VVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDV 243
           V++   +  T V  +VV +L++LGAYWW   SG +          +VEPQYSGARIEGD 
Sbjct: 180 VMLFRTSKTTIVVAIVVGLLLLLGAYWW---SGHNT---------DVEPQYSGARIEGDA 227

Query: 244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHG 303
           +TLDFVKKM++DFKNQK LHKRYAFQIVLQTREML+ALPSLVDI +PDGKHFTVCGDVHG
Sbjct: 228 VTLDFVKKMIEDFKNQKFLHKRYAFQIVLQTREMLQALPSLVDIHVPDGKHFTVCGDVHG 287

Query: 304 QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 363
           Q+YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS+EVILTLFAFKCM PSAIYL+RGNHE
Sbjct: 288 QYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHE 347

Query: 364 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSD 423
           SKSMNKIYGFEGEVRSKL+ETFVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGVKLSD
Sbjct: 348 SKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSD 407

Query: 424 IKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVR 483
           I++I+RFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ+N+LDLVVR
Sbjct: 408 IRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVR 467

Query: 484 SHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVK 543
           SHEVKDEGYEIEH+GKLITVFSAPNYCDQMGNKGAFIRFEAP LKPNIVTF+AVPHPDVK
Sbjct: 468 SHEVKDEGYEIEHEGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVK 527

Query: 544 PMAYANNFLRMF 555
           PMAYANNFLRMF
Sbjct: 528 PMAYANNFLRMF 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567400|ref|XP_003551908.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Glycine max]

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/552 (81%), Positives = 500/552 (90%), Gaps = 13/552 (2%)

Query: 4   METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE 63
           METE S+VS+AEE K LANE F A+KYSQAIDLY+QAIELNSQNAVY++NRAFAH +LEE
Sbjct: 1   METEKSNVSKAEEFKLLANEVFNARKYSQAIDLYTQAIELNSQNAVYFSNRAFAHLRLEE 60

Query: 64  YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123
           YGSAIQDA+KAIEIDP+Y KGYYRRGAA+L +GKFKEALKDFQQVKK+ PNDPDA +K+K
Sbjct: 61  YGSAIQDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLK 120

Query: 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAV 183
           ECEKAV KLKFEEAIA PESER S+A+SID+++IG   +SS VST+ AI A T  V+ A 
Sbjct: 121 ECEKAVMKLKFEEAIAAPESERRSIAESIDFRTIGKGRNSS-VSTEVAIAAVTVAVMAAA 179

Query: 184 VVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDV 243
           V++   +  T V  +VV +L++LGAYWW   SG +          +VEPQYSGARIEGDV
Sbjct: 180 VMLFRTSKTTIVVAIVVGLLLLLGAYWW---SGHNT---------DVEPQYSGARIEGDV 227

Query: 244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHG 303
           +TL+FVKKM++DFKNQK LHKRYAFQIVLQTRE L+ALPSLVDI +PDGKHFTVCGDVHG
Sbjct: 228 VTLNFVKKMIEDFKNQKFLHKRYAFQIVLQTREALQALPSLVDIHVPDGKHFTVCGDVHG 287

Query: 304 QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 363
           Q+YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS+EVILTLFAFKCM PSAIYL+RGNHE
Sbjct: 288 QYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHE 347

Query: 364 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSD 423
           SKSMNKIYGFEGEVRSKL+ETFVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGVK+SD
Sbjct: 348 SKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKVSD 407

Query: 424 IKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVR 483
           I++I+RFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ+N+LDLVVR
Sbjct: 408 IRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVR 467

Query: 484 SHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVK 543
           SHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP LKPNIVTF+AVPHPDVK
Sbjct: 468 SHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVK 527

Query: 544 PMAYANNFLRMF 555
           PMAYANNFLRMF
Sbjct: 528 PMAYANNFLRMF 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324899|ref|NP_001031534.1| serine/threonine-protein phosphatase 5 [Arabidopsis thaliana] gi|75148953|sp|Q84XU2.1|PPP5_ARATH RecName: Full=Serine/threonine-protein phosphatase 5 gi|28141302|gb|AAO26216.1| type 5 protein serine/threonine phosphatase 60 kDa isoform [Arabidopsis thaliana] gi|330255078|gb|AEC10172.1| serine/threonine-protein phosphatase 5 [Arabidopsis thaliana]

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/555 (80%), Positives = 487/555 (87%), Gaps = 19/555 (3%)

Query: 4   MET--ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
           MET  ENS VSRAEE K+ ANEAF+  KYS AIDLY++AIELNS NAVY+ANRAFAHTKL
Sbjct: 1   METKNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKL 60

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
           EEYGSAIQDASKAIE+D RY KGYYRRGAAYLAMGKFK+ALKDFQQVK+LSPNDPDA +K
Sbjct: 61  EEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRK 120

Query: 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVV 181
           +KECEKAV KLKFEEAI+VP SER SVA+SID+ +IG  P SS + T+ A+ A  A V+V
Sbjct: 121 LKECEKAVMKLKFEEAISVPVSERRSVAESIDFHTIGNKPRSSSMPTKTALAAVVAAVMV 180

Query: 182 AVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEG 241
             V       ATT   MV+ V ++LG +WWGS SG            +VEPQYSGARIEG
Sbjct: 181 VAV----RGFATTEILMVL-VSVVLGTFWWGSFSG------------KVEPQYSGARIEG 223

Query: 242 DVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDV 301
           + +TLDFVK MM+DFKNQK LHKRYA+QIVLQTR++L ALPSLVDI +P GKH TVCGDV
Sbjct: 224 EEVTLDFVKTMMEDFKNQKTLHKRYAYQIVLQTRQILLALPSLVDISVPHGKHITVCGDV 283

Query: 302 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGN 361
           HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE+ILTLFAFKCMCPS+IYL+RGN
Sbjct: 284 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEIILTLFAFKCMCPSSIYLARGN 343

Query: 362 HESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKL 421
           HESKSMNKIYGFEGEVRSKLSE FV+LFAEVFC LPLAHV+N KVFVVHGGLFSVDGVKL
Sbjct: 344 HESKSMNKIYGFEGEVRSKLSEKFVDLFAEVFCYLPLAHVINGKVFVVHGGLFSVDGVKL 403

Query: 422 SDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLV 481
           SDI+ IDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFG DVTKRFLQDN+LDL+
Sbjct: 404 SDIRAIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLQDNNLDLL 463

Query: 482 VRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 541
           VRSHEVKDEGYE+EHDGKLITVFSAPNYCDQMGNKGAFIRFEAP +KPNIVTF+AVPHPD
Sbjct: 464 VRSHEVKDEGYEVEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPD 523

Query: 542 VKPMAYANNFLRMFQ 556
           VKPMAYANNFLRMF 
Sbjct: 524 VKPMAYANNFLRMFN 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503730|ref|XP_004162148.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 5-like [Cucumis sativus]

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/553 (73%), Positives = 474/553 (85%), Gaps = 8/553 (1%)

Query: 4   METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE 63
           M   NS+V+ AE++K  AN+AF A KY+QAIDLY+QAIELN+QNA+Y+ANRAFAH KLEE
Sbjct: 1   MSNNNSNVTPAEKIKCRANKAFAAHKYAQAIDLYTQAIELNNQNAIYWANRAFAHIKLEE 60

Query: 64  YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123
           YGSA++DASKAIE++PRY KGYYRRGAAYLAMGKFKEALKDFQQ+KK+ PNDPD  QK+K
Sbjct: 61  YGSALEDASKAIEVNPRYSKGYYRRGAAYLAMGKFKEALKDFQQLKKMCPNDPDTIQKLK 120

Query: 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAV 183
           ECEKA+ KL  EEA+A P  E  SVA+SID   +G   SS+ V TQ AI+AA        
Sbjct: 121 ECEKAIGKLNSEEAVAAPLPETDSVANSIDVHRVGNKVSSTSVPTQMAIVAAAVATTAIA 180

Query: 184 VVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDV 243
           +  +   VAT VA + V VL+I+G  WWG+     +F  S    ++V+PQYSGARIEGD+
Sbjct: 181 ISTLSTKVATVVAAIAVVVLIIMGTRWWGAFH---LFFSS----VDVDPQYSGARIEGDI 233

Query: 244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHG 303
           ITLDFVKKM+D+FKNQK LH+RY FQI+ QT+ +L+ALPSLVDI IP+GK  TVCGDVHG
Sbjct: 234 ITLDFVKKMIDNFKNQKPLHRRYVFQILQQTKXILKALPSLVDITIPEGKRLTVCGDVHG 293

Query: 304 QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 363
           QFYDLLNIFELNGLPSE+NPYLFNGDFVDRGSFS+EVILTLFA KCM PSAI+LSRGNHE
Sbjct: 294 QFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAVKCMSPSAIHLSRGNHE 353

Query: 364 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSD 423
           SK+MNK+YGFEGEV++KL+ TFVELFAEVFCCLPLA+VLN+KVFVVHGGLFSVDGVKLSD
Sbjct: 354 SKTMNKMYGFEGEVKTKLNGTFVELFAEVFCCLPLAYVLNEKVFVVHGGLFSVDGVKLSD 413

Query: 424 IKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVR 483
           I+ I+RFCEPPE+GLM ++LWSDPQP PGRGPSKRGVGLSFGADVTKRFL+DN+LDL+VR
Sbjct: 414 IRMINRFCEPPEKGLMSDMLWSDPQPYPGRGPSKRGVGLSFGADVTKRFLEDNNLDLLVR 473

Query: 484 SHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVK 543
           SHEVK+EGYEI HDGKLIT+FSAPNYCDQMGNKGAFIRFE P +KPNIVTF+AVPHPDVK
Sbjct: 474 SHEVKEEGYEIAHDGKLITIFSAPNYCDQMGNKGAFIRFETPDMKPNIVTFSAVPHPDVK 533

Query: 544 PMAYANNFLRMFQ 556
           PMAYA NF + FQ
Sbjct: 534 PMAYA-NFFQFFQ 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086339|emb|CBI31780.3| unnamed protein product [Vitis vinifera]

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/467 (79%), Positives = 405/467 (86%), Gaps = 8/467 (1%)

Query: 95  MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY 154
           MGKFKEALKDFQQVKK+ PNDPDA +K+KECEKAV KLKFEEAIAVP SER SVADSID+
Sbjct: 1   MGKFKEALKDFQQVKKICPNDPDATKKLKECEKAVMKLKFEEAIAVPNSERRSVADSIDF 60

Query: 155 QSIGMSPSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILG------A 208
           +SI    ++         L     +++   ++  P++  T        L          A
Sbjct: 61  RSIASKLATGRTKALKGPLNPKP-LLLGPTLISQPSLQPTKDIFKEMCLKPTSNSPFPRA 119

Query: 209 YWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAF 268
            WWG C+ S VF+KS  + L+VEPQYSGARIEGDV+TLDFVK+M+DDFKNQKCLHKRYAF
Sbjct: 120 CWWGGCT-SGVFSKSHTVNLDVEPQYSGARIEGDVVTLDFVKRMLDDFKNQKCLHKRYAF 178

Query: 269 QIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328
           QIVLQTREMLRALPSLVDI++P+  HFTVCGDVHGQFYDLLNIF+LNGLPSEENPYLFNG
Sbjct: 179 QIVLQTREMLRALPSLVDINVPNNSHFTVCGDVHGQFYDLLNIFDLNGLPSEENPYLFNG 238

Query: 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 388
           DFVDRGSFS+EVILTLFAFKCM PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL
Sbjct: 239 DFVDRGSFSLEVILTLFAFKCMSPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 298

Query: 389 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQ 448
           FAEVFCCLPLAHV+N+K+FVVHGGLFSVDGVKLSDI+ IDRFCEPPEEGLMCELLWSDPQ
Sbjct: 299 FAEVFCCLPLAHVINEKIFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQ 358

Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
           P PGRGPSKRGVGLSFG DVTKRFLQ+N+LDLVVRSHEVKDEGYEIEHDGKLITVFSAPN
Sbjct: 359 PYPGRGPSKRGVGLSFGVDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 418

Query: 509 YCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRMF 555
           YCDQMGNKGAFIRFEAP LKPNIVTF+AVPHPDVKPMAYANNFLRMF
Sbjct: 419 YCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMF 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128732|ref|XP_002320408.1| predicted protein [Populus trichocarpa] gi|222861181|gb|EEE98723.1| predicted protein [Populus trichocarpa]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/556 (64%), Positives = 404/556 (72%), Gaps = 70/556 (12%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MPNMET+NS+VSRAEE+K LANEAF+A KY                              
Sbjct: 1   MPNMETQNSNVSRAEEIKVLANEAFKAHKY------------------------------ 30

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
               G AI   S+AIE++      +  R  A+  + ++  A++D  +  ++ P    A  
Sbjct: 31  ----GQAIDLYSQAIELNGDNAVYWANRAFAHSKLEEYGSAIQDASKATEIDPKYSKAKH 86

Query: 121 KVKECEKAVKKL-KFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATV 179
              E   A   + KF++A+   +  +    +  D        S      + A++      
Sbjct: 87  ICLERGAAYLAMGKFKDALKDFQQVKKICPNDPD-------ASKKLKECEKAVMKLKFEE 139

Query: 180 VVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARI 239
            +AV      +VA ++                      D  +      ++VEPQYSGARI
Sbjct: 140 AIAVPESQRRSVADSI----------------------DFHS------IDVEPQYSGARI 171

Query: 240 EGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCG 299
           EGD++TLDFVKKMMDDFKNQKCLHKRYAFQ+VLQTRE+L+ALPSLVDI++P+GKHFTVCG
Sbjct: 172 EGDIVTLDFVKKMMDDFKNQKCLHKRYAFQMVLQTREILQALPSLVDINVPEGKHFTVCG 231

Query: 300 DVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 359
           DVHGQFYDLLNIFELNG PSEENPYLFNGDFVDRGSFS+EVILTLFAFKCMCPSAIYLSR
Sbjct: 232 DVHGQFYDLLNIFELNGFPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIYLSR 291

Query: 360 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV 419
           GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV+N KVFVVHGGLFSVDGV
Sbjct: 292 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVINGKVFVVHGGLFSVDGV 351

Query: 420 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLD 479
           KLSDIK IDRFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSFG DVT+RFLQDN+LD
Sbjct: 352 KLSDIKAIDRFCEPPEEGLMCELLWSDPQPFPGRGPSKRGVGLSFGKDVTRRFLQDNNLD 411

Query: 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPH 539
           LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP LKPNIVTF+AVPH
Sbjct: 412 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPH 471

Query: 540 PDVKPMAYANNFLRMF 555
           P+VKPMAYANNFLRMF
Sbjct: 472 PNVKPMAYANNFLRMF 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558752|ref|XP_002520400.1| protein phosphatase-5, putative [Ricinus communis] gi|223540447|gb|EEF42016.1| protein phosphatase-5, putative [Ricinus communis]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/329 (92%), Positives = 320/329 (97%)

Query: 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
           ++VEPQYSGARIEGD +TLDFVK MMDDFK QKCLHKRYAFQIVL+TR MLR LPSLVDI
Sbjct: 148 IDVEPQYSGARIEGDTVTLDFVKNMMDDFKKQKCLHKRYAFQIVLETRNMLRTLPSLVDI 207

Query: 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
           ++PDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS+EVILTLFAF
Sbjct: 208 NVPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAF 267

Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           KCMCP+A+YLSRGNHESKSMNKIYGFEGEVRSKLS+TFVELFAEVFCCLPLAHV+N+KVF
Sbjct: 268 KCMCPTAMYLSRGNHESKSMNKIYGFEGEVRSKLSDTFVELFAEVFCCLPLAHVINEKVF 327

Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           VVHGGLFSVDGVKLS+I+ IDRFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSFGAD
Sbjct: 328 VVHGGLFSVDGVKLSEIRAIDRFCEPPEEGLMCELLWSDPQPFPGRGPSKRGVGLSFGAD 387

Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 527
           VTK+FLQ+N LDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP L
Sbjct: 388 VTKKFLQENKLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPEL 447

Query: 528 KPNIVTFAAVPHPDVKPMAYANNFLRMFQ 556
           KPNIVTF+AVPHPDVKPMAYANNFLRMFQ
Sbjct: 448 KPNIVTFSAVPHPDVKPMAYANNFLRMFQ 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329952|dbj|BAL14275.1| serine/threonine-protein phosphatase 5 [Nicotiana tabacum]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/328 (92%), Positives = 322/328 (98%)

Query: 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
           +EVEPQY+GARIEGDV+TLDFVKKM+DDFKNQK LHKRYA+Q+VLQTREMLRALPSLVDI
Sbjct: 157 VEVEPQYTGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQVVLQTREMLRALPSLVDI 216

Query: 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
            +P+GKHFTVCGDVHGQFYDLLNIFELNG PSE+NPYLFNGDFVDRGSFS+EVILTLFAF
Sbjct: 217 VVPEGKHFTVCGDVHGQFYDLLNIFELNGFPSEDNPYLFNGDFVDRGSFSLEVILTLFAF 276

Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           KCMCPSAIYL+RGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV+N KVF
Sbjct: 277 KCMCPSAIYLARGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVINGKVF 336

Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           VVHGGLFSVDGVKLSDI+TIDRFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSFGAD
Sbjct: 337 VVHGGLFSVDGVKLSDIRTIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGAD 396

Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 527
           +TKRFLQ+N+LDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP +
Sbjct: 397 ITKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDM 456

Query: 528 KPNIVTFAAVPHPDVKPMAYANNFLRMF 555
           KPN+VTF+AVPHPDVKPMAYANNFLRMF
Sbjct: 457 KPNVVTFSAVPHPDVKPMAYANNFLRMF 484

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84K11	PPP5_SOLLC	3, ., 1, ., 3, ., 1, 6	0.8363	0.9964	0.9964	N/A	no
Q84XU2	PPP5_ARATH	3, ., 1, ., 3, ., 1, 6	0.8036	0.9640	0.9962	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3.16	0.994
3rd Layer	3.1.3	0.998
3rd Layer	3.6.1.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	556
cd07417	316	cd07417, MPP_PP5_C, PP5, C-terminal metallophospha	0.0
smart00156	271	smart00156, PP2Ac, Protein phosphatase 2A homologu	1e-118
cd07420	321	cd07420, MPP_RdgC, Drosophila melanogaster RdgC an	9e-99
cd07416	305	cd07416, MPP_PP2B, PP2B, metallophosphatase domain	4e-92
cd07415	285	cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phos	1e-91
cd07414	293	cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-li	2e-81
cd00144	225	cd00144, MPP_PPP_family, phosphoprotein phosphatas	2e-73
cd07418	377	cd07418, MPP_PP7, PP7, metallophosphatase domain	9e-71
PTZ00239	303	PTZ00239, PTZ00239, serine/threonine protein phosp	2e-66
PTZ00244	294	PTZ00244, PTZ00244, serine/threonine-protein phosp	1e-65
PTZ00480	320	PTZ00480, PTZ00480, serine/threonine-protein phosp	6e-64
cd07419	311	cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 pho	2e-59
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-30
pfam08321	95	pfam08321, PPP5, PPP5 TPR repeat region	1e-24
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	4e-24
COG0639	155	COG0639, ApaH, Diadenosine tetraphosphatase and re	6e-24
pfam00149	185	pfam00149, Metallophos, Calcineurin-like phosphoes	2e-22
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-18
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-17
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-15
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-12
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-10
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	5e-10
pfam08321	95	pfam08321, PPP5, PPP5 TPR repeat region	2e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-08
TIGR03302	235	TIGR03302, OM_YfiO, outer membrane assembly lipopr	3e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-08
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	1e-07
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-06
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	1e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-06
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	3e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	8e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
cd07423	234	cd07423, MPP_PrpE, Bacillus subtilis PrpE and rela	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-05
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	3e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-05
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	8e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
cd00838	131	cd00838, MPP_superfamily, metallophosphatase super	1e-04
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	1e-04
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	1e-04
cd07424	207	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophos	1e-04
PRK13625	245	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphospha	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-04
cd07425	208	cd07425, MPP_Shelphs, Shewanella-like phosphatases	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	5e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	6e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	7e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	0.001
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.001
PRK15359	144	PRK15359, PRK15359, type III secretion system chap	0.003
COG1729	262	COG1729, COG1729, Uncharacterized protein conserve	0.004

>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain

 Score =  662 bits (1711), Expect = 0.0
 Identities = 225/316 (71%), Positives = 267/316 (84%)

Query: 234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 293
           Y G R+E + +TL+FVK+M++ FK+QK LHK+YA+QI+LQ +E+L+ LPSLV+I IP+G+
Sbjct: 1   YDGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGE 60

Query: 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 353
             TVCGD HGQFYDLLNIFELNGLPSE NPYLFNGDFVDRGSFSVEVILTLFAFK + P+
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPN 120

Query: 354 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 413
             +L+RGNHE+ +MNK+YGFEGEV++K +E   +LF+EVF  LPLAH++N KV VVHGGL
Sbjct: 121 HFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFNWLPLAHLINGKVLVVHGGL 180

Query: 414 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 473
           FS DGV L DI+ IDRF +PP+ GLMCELLWSDPQP PGR PSKRGVG  FG DVTKRFL
Sbjct: 181 FSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFL 240

Query: 474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVT 533
           ++N+L+ ++RSHEVKDEGYE+EHDGK ITVFSAPNYCDQMGNKGAFIR     LKP    
Sbjct: 241 EENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQ 300

Query: 534 FAAVPHPDVKPMAYAN 549
           F AVPHP+VKPMAYAN
Sbjct: 301 FEAVPHPNVKPMAYAN 316

Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 316

>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic domain

 Score =  351 bits (902), Expect = e-118
 Identities = 137/278 (49%), Positives = 182/278 (65%), Gaps = 8/278 (2%)

Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L+K    +++ + +E+ R  P+LV++  P     TVCGD+HGQF DLL +F+ NG P E 
Sbjct: 1   LYKEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDKNGQPPET 56

Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
           N Y+F GD+VDRG FS+EVIL LFA K + P+ I L RGNHES+SMN+IYGF  E + K 
Sbjct: 57  N-YVFLGDYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKY 115

Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
            E   E F E F  LPLA ++N K+  +HGGL S D   L DI+ + R  EPP++GL+ +
Sbjct: 116 GERIYEKFNEAFSWLPLAALINGKILCMHGGL-SPDLTTLDDIRKLKRPQEPPDDGLLID 174

Query: 442 LLWSDP-QPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKL 500
           LLWSDP QP+ G GPS RG    FG D    FL+ N+L L++R+H+V D+GYE   DGKL
Sbjct: 175 LLWSDPDQPVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKL 234

Query: 501 ITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
           +T+FSAPNYCD+ GNK A ++ +   LK     F    
Sbjct: 235 VTIFSAPNYCDRFGNKAAVLKVD-KDLKLTFEQFKPGK 271

Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members. Length = 271

>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related proteins, metallophosphatase domain

 Score =  301 bits (774), Expect = 9e-99
 Identities = 131/322 (40%), Positives = 187/322 (58%), Gaps = 34/322 (10%)

Query: 244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHG 303
           +T D +  +++ FK ++ LH +Y   I+ + R++L+ LP++  +     K  T+CGD+HG
Sbjct: 2   LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHG 61

Query: 304 QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 363
           +  DL  IF  NGLPS ENPY+FNGDFVDRG  S+E+++ LFAF  + P+ ++L+RGNHE
Sbjct: 62  KLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHE 121

Query: 364 SKSMNKIYGFEGEVRSK---LSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 420
              MN  YGF  EV SK     +  + L  +VF  LPLA +++ K+ VVHGG  S D   
Sbjct: 122 DHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGG-IS-DSTD 179

Query: 421 LSDIKTIDR--------------------FCEPPEEGL-------MCELLWSDPQPLPGR 453
           L  +  IDR                      E P E L       + ++LWSDP+   G 
Sbjct: 180 LDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC 239

Query: 454 GP-SKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 512
            P + RG G  FG DVT + LQ + L L++RSHE K EGYE  H+ K+IT+FSA NY ++
Sbjct: 240 KPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEE 299

Query: 513 MGNKGAFIRFEAPTLKPNIVTF 534
             N+GA+I+   P L P+ V +
Sbjct: 300 GSNRGAYIKL-GPDLTPHFVQY 320

RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 321

>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain

 Score =  284 bits (729), Expect = 4e-92
 Identities = 125/309 (40%), Positives = 174/309 (56%), Gaps = 25/309 (8%)

Query: 246 LDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF 305
           +D +K     F  +  L +  A +I+ +  E+LR  P+L+ I+ P     TVCGD+HGQF
Sbjct: 3   IDVLK---AHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQF 55

Query: 306 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365
           YDLL +FE+ G P     YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE +
Sbjct: 56  YDLLKLFEVGGSP-ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114

Query: 366 SMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIK 425
            + + + F+ E + K SE   +   E F CLPLA ++NQ+   VHGGL S +   L DI+
Sbjct: 115 HLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLCVHGGL-SPELKTLDDIR 173

Query: 426 TIDRFCEPPEEGLMCELLWSDPQPLPGRGP--------SKRGVGLSFGADVTKRFLQDNS 477
            +DRF EPP  G MC+LLWSDP    G           + RG    +       FLQ N+
Sbjct: 174 KLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNN 233

Query: 478 LDLVVRSHEVKDEGYEI--EHDGK----LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNI 531
           L  ++R+HE +D GY +  +        LIT+FSAPNY D   NK A +++E   +  NI
Sbjct: 234 LLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NI 291

Query: 532 VTFAAVPHP 540
             F   PHP
Sbjct: 292 RQFNCSPHP 300

PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 305

>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

 Score =  282 bits (724), Expect = 1e-91
 Identities = 117/265 (44%), Positives = 158/265 (59%), Gaps = 8/265 (3%)

Query: 275 REMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRG 334
           +E+L    ++  +  P     TVCGD+HGQFYDLL +F + G P + N YLF GD+VDRG
Sbjct: 28  KEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPDTN-YLFLGDYVDRG 82

Query: 335 SFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL-SETFVELFAEVF 393
            +SVE  L L A K   P  I L RGNHES+ + ++YGF  E   K  +    +   ++F
Sbjct: 83  YYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLF 142

Query: 394 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR 453
             LPLA +++ ++F VHGGL S     L  I+ IDRF E P EG MC+LLWSDP  + G 
Sbjct: 143 DYLPLAALIDNQIFCVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGW 201

Query: 454 GPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQM 513
           G S RG G  FG DV + F  +N L L+ R+H++  EGY+   D KL+TV+SAPNYC + 
Sbjct: 202 GISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRC 261

Query: 514 GNKGAFIRFEAPTLKPNIVTFAAVP 538
           GN  + +  +   LK +   F A P
Sbjct: 262 GNVASIMELD-EHLKRSFKVFEAAP 285

PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2A belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 285

>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain

 Score =  256 bits (655), Expect = 2e-81
 Identities = 111/263 (42%), Positives = 164/263 (62%), Gaps = 7/263 (2%)

Query: 257 KNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG 316
                L +     + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G
Sbjct: 18  GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGG 73

Query: 317 LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGE 376
            P E N YLF GD+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E
Sbjct: 74  FPPESN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDE 132

Query: 377 VRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEE 436
            + + +    + F + F CLP+A ++++K+F +HGGL S D   +  I+ I R  + P++
Sbjct: 133 CKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQSMEQIRRIMRPTDVPDQ 191

Query: 437 GLMCELLWSDPQP-LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIE 495
           GL+C+LLWSDP   + G G + RGV  +FG DV  +FL  + LDL+ R+H+V ++GYE  
Sbjct: 192 GLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFF 251

Query: 496 HDGKLITVFSAPNYCDQMGNKGA 518
              +L+T+FSAPNYC +  N GA
Sbjct: 252 AKRQLVTLFSAPNYCGEFDNAGA 274

PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 293

>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain

 Score =  233 bits (595), Expect = 2e-73
 Identities = 100/237 (42%), Positives = 123/237 (51%), Gaps = 22/237 (9%)

Query: 296 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 355
            V GD+HG   DLL + E  G P   +  +F GD+VDRG  SVEVI  L A K +  + I
Sbjct: 1   YVIGDIHGCLDDLLRLLEKIGFP-PNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVI 59

Query: 356 YLSRGNHESKSMNKIYGFEGEV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-K 405
            L RGNHE   +N +YGF  E            KL E   E F +VF  LPLA ++   K
Sbjct: 60  LL-RGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKK 118

Query: 406 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFG 465
           V  VHGGL          +   ++  E PE+ L  +LLWSDP  LPG   S R  G   G
Sbjct: 119 VLCVHGGLSP-------GLPLEEQIKEEPEDQLPEDLLWSDPLELPGGFGSSRRGG---G 168

Query: 466 ADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF 522
            D  + FL+ N L L+VR H   +EGYE  HDG LIT+ S  NYC   GNK A +  
Sbjct: 169 PDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225

The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 225

>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain

 Score =  231 bits (590), Expect = 9e-71
 Identities = 121/333 (36%), Positives = 169/333 (50%), Gaps = 57/333 (17%)

Query: 269 QIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328
            +VL   ++L   P+ V ID+ D     V GDVHGQ +D+L + E  G P +   Y+FNG
Sbjct: 42  SLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNG 101

Query: 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSET---F 385
           D+VDRG++ +E  L L ++K + P  +YL RGNHESK    +YGFE EV +K  +     
Sbjct: 102 DYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHV 161

Query: 386 VELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSD--------------------IK 425
                  F  LPLA ++  +V+  HGGLF    +                        + 
Sbjct: 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLG 221

Query: 426 TID-------RFCEPPEEGLMC---ELLWSDPQPLPGRGPSK-RGVGLSFGADVTKRFLQ 474
           T+D          +PP EG      ++LWSDP   PG  P+K RG+GL +G D T+ FL+
Sbjct: 222 TLDDLMKARRSVLDPPGEGSNLIPGDVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLE 281

Query: 475 DNSLDLVVRSHEVKD------------EGYEIEHD---GKLITVFSAPNYC------DQM 513
            N+L L++RSHE  D            +GY ++HD   GKLIT+FSAP+Y       ++ 
Sbjct: 282 KNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLFSAPDYPQFQATEERY 341

Query: 514 GNKGAFIRFEAPTLK-PNIVTFAAV-PHPDVKP 544
            NKGA+I  + P    P   TF AV P P   P
Sbjct: 342 NNKGAYIILQPPDFSDPQFHTFEAVKPRPKANP 374

PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 377

>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A; Provisional

 Score =  217 bits (554), Expect = 2e-66
 Identities = 115/292 (39%), Positives = 160/292 (54%), Gaps = 9/292 (3%)

Query: 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 308
           + + +    N  CL +R    I  + +E+     ++  +  P      VCGD+HGQFYDL
Sbjct: 3   IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDL 58

Query: 309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368
             +F+  G     N Y+F GDFVDRG  SVE +  L   K   P  I L RGNHES+   
Sbjct: 59  QALFKEGGDIPNAN-YIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCT 117

Query: 369 KIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTI 427
           ++YGF  E+  K   +    LF +VF CLPLA ++  ++  VHGGL S D   +  I+TI
Sbjct: 118 QVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGL-SPDMRTIDQIRTI 176

Query: 428 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 487
           DR  E P EG  C+L+WSDP+ +     + RG G  FGA VTK F + N L L+ R+H++
Sbjct: 177 DRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQL 236

Query: 488 KDEGYEIEH-DGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
             EGY+    D  L+TV+SAPNYC + GN  + +  +   L+    TF  VP
Sbjct: 237 VMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDE-NLQQTWKTFKEVP 287

Length = 303

>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1; Provisional

 Score =  215 bits (548), Expect = 1e-65
 Identities = 109/262 (41%), Positives = 157/262 (59%), Gaps = 8/262 (3%)

Query: 259 QKCLHKRYAFQIVLQT-REMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGL 317
           ++ L +    + VL   RE+  + P L++I  P      VCGD HGQ+YDLL IFE  G 
Sbjct: 21  RQILIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGF 76

Query: 318 PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEV 377
           P   N YLF GD+VDRG  SVE I   F +K + P   +L RGNHE  S+NK+YGF  +V
Sbjct: 77  PPYSN-YLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDV 135

Query: 378 RSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEG 437
           + + +    + F +VF  +P+  V+++K+  +HGGL S D   L+ +  I+R C+ P+ G
Sbjct: 136 KRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTSLASVNEIERPCDVPDRG 194

Query: 438 LMCELLWSDPQ-PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEH 496
           ++C+LLW+DP+  + G   S RGV   FG D+   FL    +DL+VR+H+V + GY    
Sbjct: 195 ILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFA 254

Query: 497 DGKLITVFSAPNYCDQMGNKGA 518
             +L+TVFSAPNYC +  N  A
Sbjct: 255 SRQLVTVFSAPNYCGEFDNDAA 276

Length = 294

>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase; Provisional

 Score =  211 bits (538), Expect = 6e-64
 Identities = 102/255 (40%), Positives = 161/255 (63%), Gaps = 7/255 (2%)

Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + ++ R++  + P L++++ P      +CGDVHGQ++DLL +FE  G P E N YLF GD
Sbjct: 40  LCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPESN-YLFLGD 94

Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 95  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTF 154

Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+  +HGGL S +   L  I+ I R  + P+ GL+C+LLWSDP +
Sbjct: 155 TDCFNCLPVAALIDEKILCMHGGL-SPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDK 213

Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G   ++RGV   F  ++ + FL+ + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 214 DVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPN 273

Query: 509 YCDQMGNKGAFIRFE 523
           YC +  N G+ +  +
Sbjct: 274 YCGEFDNAGSMMTID 288

Length = 320

>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain

 Score =  199 bits (508), Expect = 2e-59
 Identities = 102/282 (36%), Positives = 150/282 (53%), Gaps = 34/282 (12%)

Query: 282 PSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE-------NPYLFNGDFVDRG 334
           P ++ +  P      + GD+HGQF DL+ +F+  G P  E         YLF GD+VDRG
Sbjct: 41  PMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRG 96

Query: 335 SFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-----TFV-EL 388
           S S+E I  L A K   P+ I+L RGNHE + +N ++GF  E + +L E       V   
Sbjct: 97  SNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRR 156

Query: 389 FAEVFCCLPLAHVLNQKVFVVHGGL-FSVDGVKLSDIKTIDR-FCEPPEEGLMCELLWSD 446
              +F  LPLA ++  K+  +HGG+  S++   +S+I+ + R       E ++ +LLWSD
Sbjct: 157 INRLFEWLPLAAIIEDKILCMHGGIGRSIN--HVSEIEDLKRPLTMEFGEQVVMDLLWSD 214

Query: 447 P---QPLPGRGPS---KRGVGL--SFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDG 498
           P     + G  P+    RG GL   FG D   RFL++N L +++R+HE   +G+E    G
Sbjct: 215 PTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGFERFAQG 274

Query: 499 KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 540
           KLIT+FSA NYC   GN GA +      L  ++     + HP
Sbjct: 275 KLITLFSATNYCGTAGNAGAILV-----LGRDLTIIPKLIHP 311

Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 311

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score =  113 bits (284), Expect = 3e-30
 Identities = 40/100 (40%), Positives = 62/100 (62%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74
           E L  L N  ++   Y +A++ Y +A+EL+  NA  Y N A A+ KL +Y  A++D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 75  IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           +E+DP   K YY  G AY  +GK++EAL+ +++  +L PN
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|149395 pfam08321, PPP5, PPP5 TPR repeat region

 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 229 EVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
            +E  Y G R+E   +TL+FVK MM+ FK+QK LHK+ A+QI+LQ +E+L+ LPSLV+I
Sbjct: 37  TIEDDYDGPRLEDGKVTLEFVKDMMERFKDQKKLHKKCAYQILLQVKELLKKLPSLVEI 95

This region is specific to the PPP5 subfamily of serine/threonine phosphatases and contains TPR repeats. Length = 95

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score =  103 bits (259), Expect = 4e-24
 Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 3/152 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A++L+  A EAF    ++ A+DLY+QAI+L+  NA  YA+RA A+ KL  +  A+ DA+K
Sbjct: 2   AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--- 130
           AIE+DP   K Y R+G A + + +++ A    ++   L+P D    + +KEC++ +    
Sbjct: 62  AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEE 121

Query: 131 KLKFEEAIAVPESERHSVADSIDYQSIGMSPS 162
           K   +   +   S   +        +  + PS
Sbjct: 122 KDLVQPVPSDLPSSVTAPPVEEADATPVVPPS 153

Length = 356

>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]

 Score = 97.8 bits (243), Expect = 6e-24
 Identities = 55/153 (35%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 367 MNKIYGFEGEVRSKLSETFV----ELFAEVFCCLPL-AHVLNQKVFVVHGGLFSVDGVKL 421
           +  +YGF  E   K  E           E F  LPL A     K+   HGGL       L
Sbjct: 3   LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLL 62

Query: 422 SDIKTIDR--FCEPPEEGLMCELLWSDPQPLPGRG--PSKRGVGLSFGADVTKRFLQDNS 477
             I+ +DR   CE P  G   +LLWSDP     R   P  RGV    G DVT  F   ++
Sbjct: 63  DIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGG-DVTAVFGIVHT 121

Query: 478 LDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
             L+ R+H + D        G L+T FSAPNYC
Sbjct: 122 PKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154

Length = 155

>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase

 Score = 94.4 bits (234), Expect = 2e-22
 Identities = 60/223 (26%), Positives = 77/223 (34%), Gaps = 65/223 (29%)

Query: 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENP--YLFNGDFVDRGSFSVEVILTLFAFKCMC 351
              V GD+HG   DL  +  L  L  E  P   LF GD VDRG  S+EV+  LFA K   
Sbjct: 1   RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60

Query: 352 PSAIYLSRGNHESKSMNKIYGFEGEV-------------------------RSKLSETFV 386
           P  +YL RGNH+  S N   GF  E                            K      
Sbjct: 61  PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120

Query: 387 ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSD 446
           E F E+   L LA +++ K+ +VHG L                                 
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYL--------------------- 159

Query: 447 PQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD 489
                            FG +  +  L+DN +DLV+R H    
Sbjct: 160 -----------------FGEEALEDLLKDNGVDLVLRGHTHVP 185

This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues. Length = 185

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDA 71
           AE LK L N  F+   Y +AI+ Y +A+EL+  NA  Y N A A+ KL ++Y  A++D 
Sbjct: 2  NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 72 SKAIEIDP 79
           KA+E+DP
Sbjct: 62 EKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 85.8 bits (212), Expect = 1e-17
 Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG 65
           +E      A +LK   N+A+R K +++AI LYS+AIE    + VYY+NRA  H  L ++ 
Sbjct: 119 SEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWE 177

Query: 66  SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
             ++D + A+E+DP Y K   RR  AY  +GK+ +AL D 
Sbjct: 178 KVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKD 104
            NA    N   A  KL +Y  AI+   KA+E+DP   + YY    AYL +GK ++EAL+D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 105 FQQVKKLSP 113
            ++  +L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 67.2 bits (162), Expect = 3e-12
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDA 71
            AE L AL        +Y +A++L  +A++LN  + A    N    + KL +Y  A++  
Sbjct: 166 LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY 225

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
            KA+E+DP   +  Y      L +G+++EAL+  ++  +L P+
Sbjct: 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 61.0 bits (146), Expect = 3e-10
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELN---SQNAVYYANRAFAHTKLEEYGSAI 68
               E        +    Y +A++LY +A+EL+   ++ A            L  Y  A+
Sbjct: 128 PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187

Query: 69  QDASKAIEIDP-RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           +   KA++++P    +     G  YL +GK++EAL+ +++  +L P++ +A   +     
Sbjct: 188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247

Query: 128 AVKKLKFEEAIA 139
            +   ++EEA+ 
Sbjct: 248 ELG--RYEEALE 257

Length = 291

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 29/118 (24%), Positives = 57/118 (48%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74
           E++ ALA   ++  +Y +A+ L+      +  N+ Y+   A     L+EY  AI   + A
Sbjct: 18  EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77

Query: 75  IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
             +DP  P+ Y+      LA+G+ + ALK      ++   +P+ ++  +  E  ++ L
Sbjct: 78  AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLESL 135

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|149395 pfam08321, PPP5, PPP5 TPR repeat region

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 25/37 (67%), Positives = 32/37 (86%), Gaps = 1/37 (2%)

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSI 157
           K+KECEK VK++ FEEAIAVPE +R SVADSID +++
Sbjct: 1   KLKECEKLVKQIAFEEAIAVPEQKR-SVADSIDIENM 36

This region is specific to the PPP5 subfamily of serine/threonine phosphatases and contains TPR repeats. Length = 95

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 55.6 bits (132), Expect = 2e-08
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           A  L  LA    +  +  +A++L  +A+E  L    A    N       L +Y  A++  
Sbjct: 59  AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118

Query: 72  SKAIEIDPRYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE-CEKAV 129
            KA+ +DP            A   +G ++EAL+ +++  +L P   + A+ +        
Sbjct: 119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178

Query: 130 KKLKFEEAIA 139
              ++EEA+ 
Sbjct: 179 ALGRYEEALE 188

Length = 291

>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 21/131 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA-----FAHTKLEEYGSAI 68
           AEEL   A EA  +  Y++AI  +         +   YA +A     +A+ K  +Y  AI
Sbjct: 33  AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGDYAEAI 90

Query: 69  QDASKAIEIDPRYPK---GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPND-- 115
             A + I + P +P     YY RG +               +EA + FQ++ +  PN   
Sbjct: 91  AAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150

Query: 116 -PDAAQKVKEC 125
            PDA +++   
Sbjct: 151 APDAKKRMDYL 161

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795) [Protein fate, Protein and peptide secretion and trafficking]. Length = 235

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
                   LA  A    ++ +A  L  + +  +  N      +      L     A+   
Sbjct: 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA--- 128
            KAI + P             +  G+F+EA K    + K +PN P A        KA   
Sbjct: 217 RKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL-----KALVD 271

Query: 129 VKKLKFEEAI 138
            +K  +E+A 
Sbjct: 272 FQKKNYEDAR 281

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
            K  Y  G AYL +GK+ EAL+ +++  +L+PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 26/143 (18%), Positives = 47/143 (32%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
              E L A      R   + +A+ +  +A  L   +   +     A  +L  +  A +  
Sbjct: 98  KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAY 157

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +A+E+ P  P      G + L  G  ++A             D    Q +         
Sbjct: 158 RQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217

Query: 132 LKFEEAIAVPESERHSVADSIDY 154
            +  E IAV E      A+++  
Sbjct: 218 FREAEDIAVQELLSEQAANNVAA 240

Length = 257

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 21/64 (32%)

Query: 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
          ALA  A RA  Y +A+     A+      A        A  +      A      A+  D
Sbjct: 2  ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 79 PRYP 82
          P  P
Sbjct: 62 PDDP 65

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.8 bits (122), Expect = 3e-07
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQD 70
               L+A         + ++A++L  +A+EL  NS  A      A A  KL     A++ 
Sbjct: 22  ALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALEL 81

Query: 71  ASKAIE--IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
             KA+E  + P   +     G    A+GK++EAL+  ++   L P+   A   +      
Sbjct: 82  LEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141

Query: 129 VKKLKFEEAIA 139
                +EEA+ 
Sbjct: 142 ELG-DYEEALE 151

Length = 291

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 31  SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90
            +A + + +A++LNS++   Y +RA  H    E+  A +D  K+I++DP +   + + G 
Sbjct: 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441

Query: 91  AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
                G    ++  F++ KK  P  PD      E    + + KF+EAI
Sbjct: 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL--LLDQNKFDEAI 487

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 24/108 (22%), Positives = 46/108 (42%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A  L+ALA      K++ +A++LY + ++ +  N       A       +   A++   +
Sbjct: 86  ARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKE 145

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
            +   P     Y        A     +AL+ +QQ   L P++P+AA +
Sbjct: 146 YVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALE 193

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
            +  Y  G AYL +G + EAL+ +++  +L PN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 41/163 (25%), Positives = 59/163 (36%), Gaps = 44/163 (26%)

Query: 14  AEELKALANEAFRAKKYSQAID----------------LYSQAIEL---NSQNAVYYANR 54
           A  LKAL    F+ K Y  A +                L + A E    N + A  Y N+
Sbjct: 263 AHYLKALV--DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320

Query: 55  AFAH-------------TKLEE--YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK 99
              +              +L       AI   S A+ +DP  P      G AYLA+G F+
Sbjct: 321 ILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380

Query: 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL---KFEEAIA 139
           +A +   +  +L P +  A  +       + KL      EAIA
Sbjct: 381 KAAEYLAKATELDPENAAARTQ-----LGISKLSQGDPSEAIA 418

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 47/86 (54%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
           K+ +A+   S++IEL+ +    Y  RA  + +L +   A +D  KA++++   P  YY R
Sbjct: 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPN 114
              +   G+F +A KD+Q+   L P+
Sbjct: 406 AQLHFIKGEFAQAGKDYQKSIDLDPD 431

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
            +  Y  G AY  +G ++EAL+ +++  +L PN+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 48.3 bits (113), Expect = 4e-06
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE L  L     +  KY +A++ Y +A+EL+  NA    N A    +L  Y  A++   K
Sbjct: 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEK 261

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A+E+DP      Y  G A L +    EAL+  ++
Sbjct: 262 ALELDPD----LYNLGLALLLL--LAEALELLEK 289

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 25/102 (24%), Positives = 45/102 (44%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
            + LA+   R  +  +AI   S A+ L+  +    +    A+  L ++  A +  +KA E
Sbjct: 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           +DP       + G + L+ G   EA+ D +   +L P    A
Sbjct: 392 LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNS---QNAVYYANRAFAHTKLEEYGSAIQDASK 73
           LK+  ++A   + Y +A   + +A++L     + A+    R        ++  A+ D SK
Sbjct: 299 LKSPESKA--DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           +IE+DPR  + Y +R +  L +G   +A +DF +  KL+  DPD
Sbjct: 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 11/159 (6%)

Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-- 63
           T       AE L           +   A   Y QA+ ++ ++   YA    A   L E  
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL--YAKLGLAQLALAENR 174

Query: 64  YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----- 118
           +  A     + +  DP        +G   L++G  + AL  +++   L PN+        
Sbjct: 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA 234

Query: 119 --AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQ 155
               +  E E+A K        A      H +   +D+Q
Sbjct: 235 TILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ 273

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 44  NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------DPRYPKGYYRRGAAYLAMG 96
           +   A    N A    +L +Y  A++   KA+E+        P   +        YLA+G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 97  KFKEALKDFQQVKKLSPN 114
            + EAL+  ++   L   
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
               G A   +G + EA++ +++  +L P++ +A   +      + K  +EEA+ 
Sbjct: 6   LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGK-DYEEALE 59

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 18/93 (19%), Positives = 32/93 (34%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
                A+  Y +AI L   N       A    +  E+  A + A   ++  P  P  +Y 
Sbjct: 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL 266

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           +         +++A +  Q   K +P    A  
Sbjct: 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALL 299

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins, metallophosphatase domain

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 24/140 (17%)

Query: 295 FTVCGDVHGQFYDLLNIFELNG---------LPSEENPYLFNGDFVDRGSFSVEVI-LTL 344
           F + GDVHG + +L  + E  G            E    +F GD VDRG  S EV+ L +
Sbjct: 3   FDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVM 62

Query: 345 FAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSET----------FVELFAEVFC 394
                    A     GNH++K   K+ G   ++   L ET          F E   E + 
Sbjct: 63  SMVA---AGAALCVPGNHDNKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYE 119

Query: 395 CLPLAHVL-NQKVFVVHGGL 413
            LP   VL   K+ V H G+
Sbjct: 120 SLPSHLVLDEGKLVVAHAGI 139

PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           + ALA    R     +A+    +A ELN Q        A  +    +   A+   ++A +
Sbjct: 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-------DAAQKVKECEKAV 129
             P  P+ +   G A LA G   +A+  F+++  L P+         DA   +K   KA+
Sbjct: 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

Query: 130 KKLK 133
             LK
Sbjct: 656 TSLK 659

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 13  RAEELKA--------LANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEE 63
           +A  L          LA       K+ Q +D       L+ +  A   A R  A+  L +
Sbjct: 81  KALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQ 140

Query: 64  YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM--GKFKEALKDFQQVKKLSPNDPDA 118
              A +   +A+ IDPR    Y + G A LA+   +F EA     +V    P + DA
Sbjct: 141 LELAQKSYEQALAIDPRSL--YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 57  AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
            + + E++  A+    + + + P  P     RG  Y  +G F+ AL D +   +L P+ P
Sbjct: 4   IYLREEDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAP 63

Query: 117 DAAQ 120
           DA +
Sbjct: 64  DAER 67

Length = 73

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 18/90 (20%), Positives = 38/90 (42%)

Query: 27  AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86
           A   ++A+  + + + L   +A+     A A+  ++ Y  AI    +A+E+ P   +   
Sbjct: 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673

Query: 87  RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
                 LA  + + A K  + ++K  P   
Sbjct: 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA---FAHTKLEEYGSAIQ 69
                   A + + A +Y +A+ L    I     N  Y            K +E   AI+
Sbjct: 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKE---AIE 361

Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
              KA+ +DP  P        A L  GK +EA++   +     P DP+
Sbjct: 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409

Length = 484

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS-AIQDASKAIEI 77
           ALA      K Y +AI  Y   ++    NAV   N A+ +  LE     A++ A +A+++
Sbjct: 775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY--LELKDPRALEYAERALKL 832

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
            P  P      G   +  G+   AL   ++   ++P    
Sbjct: 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily, metallophosphatase domain

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 297 VCGDVHGQFYDLLNIFELNGLPSEENP--YLFNGDFVDRGSFSVEVILTLFAFKCMCPSA 354
           V  D+HG    L  + E   L + E P   L  GD V  G    EV+    A   +    
Sbjct: 2   VISDIHGNLEALEAVLEAA-LAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60

Query: 355 IYLSRGNHE 363
           +Y+  GNH+
Sbjct: 61  VYVVPGNHD 69

Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 131

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
           KA+E+DP   + YY      L +G++ EAL+
Sbjct: 4   KALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQ-----NAVYYANRAFAHTKLEEYGSAIQDASKAI 75
           A    +A  Y+ AI  +   ++   +     NA Y+   A+      +Y  A +     +
Sbjct: 7   ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY--YAQGDYADAAKAFLAVV 64

Query: 76  EIDPRYPK---GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
           +  P+ PK      + G +   +G  ++A    QQV K  P    AA+  ++
Sbjct: 65  KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS-AAKLAQK 115

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 43/180 (23%), Positives = 54/180 (30%), Gaps = 40/180 (22%)

Query: 297 VCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIY 356
           V GD+HG +  L    +  G     +  +  GD +DRG  S+   L L           +
Sbjct: 5   VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLAC-LELLLE-----PWFH 58

Query: 357 LSRGNHESKSMNKIYGFEGEVRSK--------------LSETFVELFAEVFCCLPLAHVL 402
             RGNHE      I     E                    E      A     LPLA  +
Sbjct: 59  AVRGNHE---QMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEV 115

Query: 403 ---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS-------DPQPLPG 452
                KV +VH           SD            E    ELLWS         QP+ G
Sbjct: 116 ETEGGKVGIVHA---DYPSDDWSDGVGAVTLRPEDIE----ELLWSRTRIQKAQTQPIKG 168

PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 207

>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 41/151 (27%)

Query: 294 HFTVCGDVHGQFYDLLNIFEL------NGLP--SEENPYLFNGDFVDRGSFSVEVILTLF 345
            + + GD+HG + +   + E       +GLP   ++    F GD  DRG  S+ +I    
Sbjct: 2   KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMI--EI 59

Query: 346 AFKCMCPSAIYLSRGNHESKSMNKIY------------GFEGEV----------RSKLSE 383
            ++ +   A Y   GNH     NK+Y            G E  V          ++ + E
Sbjct: 60  VWELVEKKAAYYVPGNH----CNKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKE 115

Query: 384 TFVELFAEVFCCLPLAHVL-NQKVFVVHGGL 413
            F+ L+ +     PL H+L   ++ V H G+
Sbjct: 116 KFITLYEQA----PLYHILDEGRLVVAHAGI 142

Length = 245

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
          A    N   A+ KL +Y  A++   KA+E++P  
Sbjct: 1  AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 29/139 (20%)

Query: 299 GDVHGQFYDLLNIFELNGLPSEENPYLFN-------GDFVDRGSFSVEVILTLFAFKCMC 351
           GD+HG       I +  G+    + ++         GD  DRG   +E++  L+  +   
Sbjct: 4   GDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEA 63

Query: 352 PSA----IYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-------ELFA---EVFCCL- 396
             A     +L  GNHE   MN + G    V  K    F        ELF+   E+   L 
Sbjct: 64  AKAGGKVHFLL-GNHE--LMN-LCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLR 119

Query: 397 --PLAHVLNQKVFVVHGGL 413
             P+   +N  +F VHGGL
Sbjct: 120 SKPVIVKVNDTLF-VHGGL 137

This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 208

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN 47
          A+ L  L N   +  KY +A++ Y +A+ELN  N
Sbjct: 1  AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQ 69
          L  LA    R   Y +A++L  +A+EL  +        A    N A  +  L +Y  A++
Sbjct: 8  LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67

Query: 70 DASKAIEIDPR 80
             KA+ +   
Sbjct: 68 YLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
               G  Y  +G + EAL+ +++  +L P++ DA   +       K  K+EEA+ 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY--YKLGKYEEALE 55

Length = 100

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN 47
          AE L  L N   +   Y +A++ Y +A+EL+  N
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
          A    N   A+ KL +Y  A++   KA+E+DP  
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEY 64
           +      A   +   +   R K Y  AI  Y +A++   +SQNA+          KL   
Sbjct: 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI----------KLHRA 745

Query: 65  GSAIQDASKA-------IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
             A  + ++A       ++  P            YLA   + +A+K +Q V K +P++ 
Sbjct: 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 42.1 bits (100), Expect = 6e-04
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 27/140 (19%)

Query: 13  RAEEL--KALANEAFRAKKYSQAIDLYSQ------AIE------------LNSQNAVYY- 51
           RAEEL  + +    F      Q +++Y Q      AI+            L  + A +Y 
Sbjct: 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC 184

Query: 52  --ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
             A +A A   L+    A     KA+  DP+  +     G   LA G +  A++  ++V+
Sbjct: 185 ELAQQALARGDLDA---ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241

Query: 110 KLSPND-PDAAQKVKECEKA 128
           +  P    +   K+ EC +A
Sbjct: 242 EQDPEYLSEVLPKLMECYQA 261

Length = 389

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           L+ALA   F     SQA+ +     E+ +   +Y        T+   + +A +     +E
Sbjct: 80  LRALARNDF-----SQALAIRPDMPEVFNYLGIYL-------TQAGNFDAAYEAFDSVLE 127

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
           +DP Y   +  RG A    G++K A  D     +  PNDP
Sbjct: 128 LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167

Length = 297

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           ALA     A ++ +A      A  L     NS  A Y   +A    + + Y  A +    
Sbjct: 232 ALATILIEAGEFEEA---EKHADALLKKAPNSPLAHYL--KALVDFQKKNYEDARETLQD 286

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
           A++  P Y       GA+   +G  ++A +   Q+ K +PN   A 
Sbjct: 287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAR 332

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN 47
          AE L  L    ++   Y +A++ Y +A+EL+  N
Sbjct: 1  AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 37  YSQAIELNSQNA-------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89
           +SQA+ L    A       +Y        T+   + +A +     +E+DP Y   Y  RG
Sbjct: 87  FSQALALRPDMADAYNYLGIYL-------TQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139

Query: 90  AAYLAMGKFKEALKDFQQVKKLSPNDP 116
            A    G+++ A  D     +  PNDP
Sbjct: 140 IALYYGGRYELAQDDLLAFYQDDPNDP 166

Length = 296

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           YY  G  YL +G ++EA + +++  +L PN
Sbjct: 4   YYLLGQIYLQLGDYEEAKEYYEKALELDPN 33

Length = 34

>gnl|CDD|185257 PRK15359, PRK15359, type III secretion system chaperone protein SscB; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT--KLEEYGSAIQDAS 72
           E + A    +++   YS+A+  +S  +   +Q   + A+ A A T   L+EY +AI    
Sbjct: 25  ETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYG 82

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
            A+ +D  +P+  Y+ G     MG+   A + FQ   K+S  D 
Sbjct: 83  HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126

Length = 144

>gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 32/152 (21%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYS---------QAIELNS-----QNA 48
           N+E +  + +R + L++        +  +Q I   S          +  ++        A
Sbjct: 88  NVERQEENEARLDSLES------GRQALAQGIGDQSGAAPDATTPGSASVDGDGAPVSPA 141

Query: 49  VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG------YYRRGAAYLAMGKFKEAL 102
               N A    K  +Y  A Q     I+   +YP        YY  G +  A G +++A 
Sbjct: 142 TKLYNAALDLYKSGDYAEAEQAFQAFIK---KYPNSTYTPNAYYWLGESLYAQGDYEDAA 198

Query: 103 KDF---QQVKKLSPNDPDAAQKVKECEKAVKK 131
             F    +    SP  PDA  K+      +  
Sbjct: 199 YIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230

Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	556
KOG0372	303	consensus Serine/threonine specific protein phosph	100.0
cd07417	316	MPP_PP5_C PP5, C-terminal metallophosphatase domai	100.0
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	100.0
cd07420	321	MPP_RdgC Drosophila melanogaster RdgC and related	100.0
KOG0373	306	consensus Serine/threonine specific protein phosph	100.0
cd07415	285	MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein	100.0
cd07416	305	MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca	100.0
PTZ00480	320	serine/threonine-protein phosphatase; Provisional	100.0
PTZ00239	303	serine/threonine protein phosphatase 2A; Provision	100.0
cd07418	377	MPP_PP7 PP7, metallophosphatase domain. PP7 is a p	100.0
PTZ00244	294	serine/threonine-protein phosphatase PP1; Provisio	100.0
cd07414	293	MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme	100.0
KOG0374	331	consensus Serine/threonine specific protein phosph	100.0
KOG0375	517	consensus Serine-threonine phosphatase 2B, catalyt	100.0
smart00156	271	PP2Ac Protein phosphatase 2A homologues, catalytic	100.0
cd07419	311	MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a	100.0
KOG0371	319	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0377	631	consensus Protein serine/threonine phosphatase RDG	100.0
cd00144	225	MPP_PPP_family phosphoprotein phosphatases of the	100.0
cd07425	208	MPP_Shelphs Shewanella-like phosphatases, metallop	99.93
PRK13625	245	bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision	99.93
cd07413	222	MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat	99.91
PRK00166	275	apaH diadenosine tetraphosphatase; Reviewed	99.9
cd07422	257	MPP_ApaH Escherichia coli ApaH and related protein	99.9
cd07423	234	MPP_PrpE Bacillus subtilis PrpE and related protei	99.9
TIGR00668	279	apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric	99.9
PRK11439	218	pphA serine/threonine protein phosphatase 1; Provi	99.89
cd07421	304	MPP_Rhilphs Rhilph phosphatases, metallophosphatas	99.89
PHA02239	235	putative protein phosphatase	99.88
cd07424	207	MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do	99.88
PRK09968	218	serine/threonine-specific protein phosphatase 2; P	99.85
KOG0553	304	consensus TPR repeat-containing protein [General f	99.76
PRK15359	144	type III secretion system chaperone protein SscB;	99.63
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.57
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.55
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.51
KOG1126	638	consensus DNA-binding cell division cycle control	99.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.47
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.43
PRK11189	296	lipoprotein NlpI; Provisional	99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.39
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.37
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.37
KOG1126	638	consensus DNA-binding cell division cycle control	99.35
PRK15359	144	type III secretion system chaperone protein SscB;	99.34
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.33
PRK12370	553	invasion protein regulator; Provisional	99.32
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.32
PRK12370	553	invasion protein regulator; Provisional	99.32
KOG1125	579	consensus TPR repeat-containing protein [General f	99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.29
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.29
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.27
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.26
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.25
PF00149	200	Metallophos: Calcineurin-like phosphoesterase; Int	99.25
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.24
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.24
KOG4234	271	consensus TPR repeat-containing protein [General f	99.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.22
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.21
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.21
KOG1125	579	consensus TPR repeat-containing protein [General f	99.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.2
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.2
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.16
PRK15331	165	chaperone protein SicA; Provisional	99.16
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.14
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.14
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.13
PLN02789	320	farnesyltranstransferase	99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.1
PRK11189	296	lipoprotein NlpI; Provisional	99.09
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.07
cd00841	155	MPP_YfcE Escherichia coli YfcE and related protein	99.07
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.07
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.06
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.04
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.03
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.03
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.03
PF12850	156	Metallophos_2: Calcineurin-like phosphoesterase su	99.03
TIGR00040	158	yfcE phosphoesterase, MJ0936 family. Members of th	99.01
PLN02789	320	farnesyltranstransferase	99.01
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.01
KOG0553	304	consensus TPR repeat-containing protein [General f	99.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.99
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.98
PF08321	95	PPP5: PPP5 TPR repeat region; InterPro: IPR013235	98.98
KOG2076	895	consensus RNA polymerase III transcription factor	98.98
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.97
PRK10803	263	tol-pal system protein YbgF; Provisional	98.97
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.95
PRK09453	182	phosphodiesterase; Provisional	98.93
COG0639	155	ApaH Diadenosine tetraphosphatase and related seri	98.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.91
KOG2003	840	consensus TPR repeat-containing protein [General f	98.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.87
PRK14574	822	hmsH outer membrane protein; Provisional	98.86
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.86
cd07397	238	MPP_DevT Myxococcus xanthus DevT and related prote	98.85
cd07379	135	MPP_239FB Homo sapiens 239FB and related proteins,	98.85
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.83
KOG4555	175	consensus TPR repeat-containing protein [Function	98.83
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.82
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.8
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.79
KOG2076	895	consensus RNA polymerase III transcription factor	98.78
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.76
PF13512	142	TPR_18: Tetratricopeptide repeat	98.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.72
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.72
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.72
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.71
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.71
PF12688	120	TPR_5: Tetratrico peptide repeat	98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.68
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.67
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.66
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.66
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.65
cd07388	224	MPP_Tt1561 Thermus thermophilus Tt1561 and related	98.64
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.64
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.63
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.62
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.62
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.62
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.62
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.61
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.61
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.61
cd07394	178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	98.6
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.58
PRK14574	822	hmsH outer membrane protein; Provisional	98.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.56
KOG1129	478	consensus TPR repeat-containing protein [General f	98.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.54
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.54
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.54
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.54
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.54
PRK11906	458	transcriptional regulator; Provisional	98.53
cd00838	131	MPP_superfamily metallophosphatase superfamily, me	98.53
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.52
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.51
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.49
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.48
KOG1129	478	consensus TPR repeat-containing protein [General f	98.47
PRK11906	458	transcriptional regulator; Provisional	98.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.47
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.47
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.47
PRK05340	241	UDP-2,3-diacylglucosamine hydrolase; Provisional	98.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.44
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.4
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.39
PRK15331	165	chaperone protein SicA; Provisional	98.38
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.38
KOG2003	840	consensus TPR repeat-containing protein [General f	98.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.34
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.34
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.34
cd07404	166	MPP_MS158 Microscilla MS158 and related proteins,	98.33
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.33
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.3
cd07392	188	MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel	98.28
cd07403	129	MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel	98.25
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.24
TIGR01854	231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	98.23
PF12688	120	TPR_5: Tetratrico peptide repeat	98.23
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.22
cd07399	214	MPP_YvnB Bacillus subtilis YvnB and related protei	98.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.21
COG0622	172	Predicted phosphoesterase [General function predic	98.19
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.16
PRK10803	263	tol-pal system protein YbgF; Provisional	98.16
cd07400	144	MPP_YydB Bacillus subtilis YydB and related protei	98.15
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.1
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.1
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.03
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.02
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.98
PF13428	44	TPR_14: Tetratricopeptide repeat	97.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.95
PF13428	44	TPR_14: Tetratricopeptide repeat	97.94
PRK11340	271	phosphodiesterase YaeI; Provisional	97.93
cd07395	262	MPP_CSTP1 Homo sapiens CSTP1 and related proteins,	97.91
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.91
cd07383	199	MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase	97.9
PF13431	34	TPR_17: Tetratricopeptide repeat	97.89
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.87
PF13431	34	TPR_17: Tetratricopeptide repeat	97.84
KOG4234	271	consensus TPR repeat-containing protein [General f	97.84
cd07385	223	MPP_YkuE_C Bacillus subtilis YkuE and related prot	97.84
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.82
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.82
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.82
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.79
KOG4555	175	consensus TPR repeat-containing protein [Function	97.79
PRK04036	504	DNA polymerase II small subunit; Validated	97.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.77
PF06874	640	FBPase_2: Firmicute fructose-1,6-bisphosphatase; I	97.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.71
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.68
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.67
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.64
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.64
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.63
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.63
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.61
TIGR03729	239	acc_ester putative phosphoesterase. Members of thi	97.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.58
cd07391	172	MPP_PF1019 Pyrococcus furiosus PF1019 and related	97.54
PF13512	142	TPR_18: Tetratricopeptide repeat	97.52
TIGR00619	253	sbcd exonuclease SbcD. This family is based on the	97.46
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.45
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.45
cd07396	267	MPP_Nbla03831 Homo sapiens Nbla03831 and related p	97.45
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.42
cd00844	262	MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t	97.41
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.36
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.36
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.32
PRK11148	275	cyclic 3',5'-adenosine monophosphate phosphodieste	97.31
COG1409	301	Icc Predicted phosphohydrolases [General function	97.29
PHA02546	340	47 endonuclease subunit; Provisional	97.28
cd00840	223	MPP_Mre11_N Mre11 nuclease, N-terminal metallophos	97.28
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.28
cd07390	168	MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro	97.25
PLN03218	1060	maturation of RBCL 1; Provisional	97.23
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.21
cd07402	240	MPP_GpdQ Enterobacter aerogenes GpdQ and related p	97.18
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.16
COG2908	237	Uncharacterized protein conserved in bacteria [Fun	97.16
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.16
KOG1310	758	consensus WD40 repeat protein [General function pr	97.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.11
PLN03218	1060	maturation of RBCL 1; Provisional	97.09
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.08
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.08
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.08
cd08165	156	MPP_MPPE1 human MPPE1 and related proteins, metall	97.05
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.05
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.99
PLN03077	857	Protein ECB2; Provisional	96.98
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.97
PRK10966	407	exonuclease subunit SbcD; Provisional	96.97
KOG2471	696	consensus TPR repeat-containing protein [General f	96.95
PRK10941	269	hypothetical protein; Provisional	96.91
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.89
cd07393	232	MPP_DR1119 Deinococcus radiodurans DR1119 and rela	96.89
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.86
COG1407	235	Predicted ICC-like phosphoesterases [General funct	96.84
TIGR00024	225	SbcD_rel_arch putative phosphoesterase, SbcD/Mre11	96.83
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.83
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.81
KOG1585	308	consensus Protein required for fusion of vesicles	96.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.78
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.78
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.77
PRK10941	269	hypothetical protein; Provisional	96.7
cd08163	257	MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related	96.7
TIGR00583	405	mre11 DNA repair protein (mre11). All proteins in	96.68
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.67
cd07380	150	MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re	96.64
PLN03077	857	Protein ECB2; Provisional	96.62
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.61
PRK04841	903	transcriptional regulator MalT; Provisional	96.54
cd07398	217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	96.52
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.52
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.52
PRK04841	903	transcriptional regulator MalT; Provisional	96.48
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.47
COG4186	186	Predicted phosphoesterase or phosphohydrolase [Gen	96.44
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.38
COG2129	226	Predicted phosphoesterases, related to the Icc pro	96.36
cd07401	256	MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal	96.35
KOG1586	288	consensus Protein required for fusion of vesicles	96.33
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.29
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.29
cd08166	195	MPP_Cdc1_like_1 uncharacterized subgroup related t	96.25
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.23
KOG1586	288	consensus Protein required for fusion of vesicles	96.22
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.16
cd07386	243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	96.16
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.16
cd00839	294	MPP_PAPs purple acid phosphatases of the metalloph	96.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.15
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.15
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.15
cd00845	252	MPP_UshA_N_like Escherichia coli UshA-like family,	96.09
COG1408	284	Predicted phosphohydrolases [General function pred	96.08
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.07
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.05
cd08164	193	MPP_Ted1 Saccharomyces cerevisiae Ted1 and related	96.03
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.03
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.03
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.03
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.02
cd07384	171	MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re	96.02
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.96
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.94
KOG3364	149	consensus Membrane protein involved in organellar	95.92
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.9
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	95.85
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.84
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.84
KOG3325	183	consensus Membrane coat complex Retromer, subunit	95.83
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.73
COG0420	390	SbcD DNA repair exonuclease [DNA replication, reco	95.72
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.4
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.3
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.22
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.22
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.2
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.92
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.78
KOG2471	696	consensus TPR repeat-containing protein [General f	94.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.7
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.65
COG1768	230	Predicted phosphohydrolase [General function predi	94.61
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.59
PF14582	255	Metallophos_3: Metallophosphoesterase, calcineurin	94.39
cd07410	277	MPP_CpdB_N Escherichia coli CpdB and related prote	94.25
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.2
COG2912	269	Uncharacterized conserved protein [Function unknow	94.18
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.18
COG2912	269	Uncharacterized conserved protein [Function unknow	94.16
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.14
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.92
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.89
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.75
KOG3364	149	consensus Membrane protein involved in organellar	93.69
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.68
KOG3662	410	consensus Cell division control protein/predicted	93.64
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.64
KOG1585	308	consensus Protein required for fusion of vesicles	93.61
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.61
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.58
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.47
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.18
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.17
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.15
cd07412	288	MPP_YhcR_N Bacillus subtilis YhcR endonuclease and	93.07
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.97
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.95
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.76
cd07378	277	MPP_ACP5 Homo sapiens acid phosphatase 5 and relat	92.72
PLN02533	427	probable purple acid phosphatase	92.67
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.49
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.25
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.12
cd07408	257	MPP_SA0022_N Staphylococcus aureus SA0022 and rela	92.11
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	91.99
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.85
KOG1310	758	consensus WD40 repeat protein [General function pr	91.78
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.76
KOG2300	629	consensus Uncharacterized conserved protein [Funct	91.74
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.68
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.68
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.45
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.44
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.16
cd07411	264	MPP_SoxB_N Thermus thermophilus SoxB and related p	91.08
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.0
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.91
cd07387	257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	90.8
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	90.71
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.64
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.52
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.38
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.28
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.19
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.17
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.08
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.97
KOG1258	577	consensus mRNA processing protein [RNA processing	89.9
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.52
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.3
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.27
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	88.95
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.79
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.56
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	88.4
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.24
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	88.09
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.07
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.04
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	87.94
cd07409	281	MPP_CD73_N CD73 ecto-5'-nucleotidase and related p	87.87
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.54
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.51
TIGR00282	266	metallophosphoesterase, MG_246/BB_0505 family. A m	87.43
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.4
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.4
COG3855	648	Fbp Uncharacterized protein conserved in bacteria	86.67
PRK09419	1163	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	85.85
COG1311	481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	85.81
cd07406	257	MPP_CG11883_N Drosophila melanogaster CG11883 and	85.52
KOG2476	528	consensus Uncharacterized conserved protein [Funct	85.46
KOG0529	421	consensus Protein geranylgeranyltransferase type I	85.41
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.21
KOG2863	456	consensus RNA lariat debranching enzyme [RNA proce	84.7
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	84.58
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.53
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.42
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	84.41
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	84.21
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.14
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.96
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	83.77
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.02
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	82.95
COG3947	361	Response regulator containing CheY-like receiver a	82.72
cd00842	296	MPP_ASMase acid sphingomyelinase and related prote	81.97
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.49
KOG2581	493	consensus 26S proteasome regulatory complex, subun	80.86
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.81
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.35
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	80.17

>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-84  Score=585.43  Aligned_cols=284  Identities=42%  Similarity=0.753  Sum_probs=276.0

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730          249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  328 (556)
Q Consensus       249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG  328 (556)
                      +++.++++++...+++.+|..||.++.++|.+|+++++++.|    ++|+||||||++||+.+|+..|-++++ +|+|||
T Consensus         3 ldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tP----vtvcGDIHGQf~Dllelf~igG~~~~t-~YLFLG   77 (303)
T KOG0372|consen    3 LDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTP----VTVCGDIHGQFYDLLELFRIGGDVPET-NYLFLG   77 (303)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCC----cEEeecccchHHHHHHHHHhCCCCCCC-ceEeec
Confidence            678999999999999999999999999999999999999998    999999999999999999998888765 599999


Q ss_pred             ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeEE
Q 008730          329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF  407 (556)
Q Consensus       329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~  407 (556)
                      ||||||-.|+|++.+|+.||++||++|++||||||++.++..|||++||.+||+ ..+|+.+.+.|+.||++|+|++++|
T Consensus        78 DyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kif  157 (303)
T KOG0372|consen   78 DYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIF  157 (303)
T ss_pred             chhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEE
Confidence            999999999999999999999999999999999999999999999999999996 5899999999999999999999999


Q ss_pred             EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730          408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV  487 (556)
Q Consensus       408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~  487 (556)
                      |||||+ ||.+.++++|+.++|..+.|+++.++|+|||||.+..||..++||+|+.||.++++.|++.||+++|+|+||.
T Consensus       158 CVHGGl-SP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQL  236 (303)
T KOG0372|consen  158 CVHGGL-SPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQL  236 (303)
T ss_pred             EEcCCC-CcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCC
Q 008730          488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPH  539 (556)
Q Consensus       488 ~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~  539 (556)
                      +++||++.|+++|+|||||||||++++|.||||.| +++....|..|++.|.
T Consensus       237 v~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~l-de~~~~~F~vFeaa~~  287 (303)
T KOG0372|consen  237 VMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILEL-DEDLDKDFRVFEAAPQ  287 (303)
T ss_pred             HHhhHHHhcCCceEEEecCCchhhhcCChHHheee-ccccCcceEeeecchh
Confidence            99999999999999999999999999999999999 7888889999999874

>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain

Probab=100.00  E-value=1.7e-79  Score=609.37  Aligned_cols=316  Identities=71%  Similarity=1.236  Sum_probs=304.1

Q ss_pred             CCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHH
Q 008730          234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE  313 (556)
Q Consensus       234 ~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~  313 (556)
                      |+||+++++.+|.++++++++.+++++.++..++.+||.++.++|+++|++++++.|..++++||||||||+.+|.++|+
T Consensus         1 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~   80 (316)
T cd07417           1 YDGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFE   80 (316)
T ss_pred             CCCcccCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHH
Confidence            78999999889999999999999999999999999999999999999999999998877889999999999999999999


Q ss_pred             hcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHh
Q 008730          314 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF  393 (556)
Q Consensus       314 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  393 (556)
                      ..|+++.+++|||||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+..++..+.++|
T Consensus        81 ~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f  160 (316)
T cd07417          81 LNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVF  160 (316)
T ss_pred             hcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHH
Confidence            99998777789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHH
Q 008730          394 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL  473 (556)
Q Consensus       394 ~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl  473 (556)
                      .+||++++++++++||||||+++...+++++++++|+.+++.+++++|+|||||.+..++.+++||.|+.||++++++||
T Consensus       161 ~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl  240 (316)
T cd07417         161 NWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFL  240 (316)
T ss_pred             HhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHH
Confidence            99999999999999999999777889999999999999888999999999999998889999999999999999999999


Q ss_pred             HHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccchh
Q 008730          474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYAN  549 (556)
Q Consensus       474 ~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (556)
                      ++||+++||||||++++||++.++++|+||||||||||..+|+||+|.|...+++++|++|++.|+|.+.||+|+|
T Consensus       241 ~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (316)
T cd07417         241 EENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHPNVKPMAYAN  316 (316)
T ss_pred             HHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCCCCCccCCCC
Confidence            9999999999999999999999999999999999999999999999999433899999999999999999999986

Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=100.00  E-value=5e-79  Score=608.34  Aligned_cols=471  Identities=65%  Similarity=1.088  Sum_probs=442.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+.+.++.++..++|+.|+..|.+|++++|+++..+.+++.++.+.++|..|+.++.+|++++|....+|++.|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            35667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccc-cccccccCCCCCccchhHHH
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS-IDYQSIGMSPSSSFVSTQAA  171 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~  171 (556)
                      .+++++.+|...|++...+.|+++.+...+..|.....+.+++.|+........+.... ++                  
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~------------------  144 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKID------------------  144 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccc------------------
Confidence            99999999999999999999999999999999999888877888876655222211000 11                  


Q ss_pred             HHHhhhhhhhHhhhcccHHHHHHHHhHHHHHHHHHhhhcccCCCCCCccccccccccc-cCCCCCCcccCCCCCCHHHHH
Q 008730          172 ILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELE-VEPQYSGARIEGDVITLDFVK  250 (556)
Q Consensus       172 ~~~~~~~~~~a~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~l~~~~it~~~i~  250 (556)
                                                               .|.            .. ++..|.|+.++...+|.++++
T Consensus       145 -----------------------------------------~~~------------~~~i~~~y~g~~le~~kvt~e~vk  171 (476)
T KOG0376|consen  145 -----------------------------------------EED------------MDLIESDYSGPVLEDHKVTLEFVK  171 (476)
T ss_pred             -----------------------------------------ccc------------ccccccccCCcccccchhhHHHHH
Confidence                                                     011            11 678889999998679999999


Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeeccc
Q 008730          251 KMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDF  330 (556)
Q Consensus       251 ~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~  330 (556)
                      .+++.+++++.++..++..|+..+.++++.+|+++++..|...++.|+||+||++.++.++|+..|.|+.+..|+|.||+
T Consensus       172 ~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdf  251 (476)
T KOG0376|consen  172 TLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDF  251 (476)
T ss_pred             HHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEe
Q 008730          331 VDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVH  410 (556)
Q Consensus       331 vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vH  410 (556)
                      ||||..|.|+...++..|+.+|+++|++|||||+..++..|||.+++..+|.++.+..+.+.|..||++..|+++++.+|
T Consensus       252 v~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~i~~~~~~~h  331 (476)
T KOG0376|consen  252 VDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHLINNKVLVMH  331 (476)
T ss_pred             eeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhhhcCceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecccccc
Q 008730          411 GGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDE  490 (556)
Q Consensus       411 gGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~  490 (556)
                      ||+|++...+++++++|.|+..+++.+.++++|||||....|.+++.||.|..||++++++||+.|+++.||||||+.+.
T Consensus       332 gglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i~rshe~~d~  411 (476)
T KOG0376|consen  332 GGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFLQDNNLDKIIRSHEVKDE  411 (476)
T ss_pred             cCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHHhhcchHHHhhccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccchhhhhhh
Q 008730          491 GYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRM  554 (556)
Q Consensus       491 G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (556)
                      ||++.|+|+|+|||||||||+..+|.||++.++.+++++.+++|+++|||.++||+|+|.++++
T Consensus       412 gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ma~~ns~~~~  475 (476)
T KOG0376|consen  412 GYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKPMAYANSLLQW  475 (476)
T ss_pred             ceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCCcccccccccC
Confidence            9999999999999999999999999999999988999999999999999999999999997765

>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain

Probab=100.00  E-value=2.8e-74  Score=569.64  Aligned_cols=289  Identities=44%  Similarity=0.810  Sum_probs=268.3

Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCC
Q 008730          244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP  323 (556)
Q Consensus       244 it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~  323 (556)
                      +|.+.++++++.+.++..++..++..||.++.++|++||++++++.|...+++||||||||+++|.++|+..|+++.+++
T Consensus         2 ~~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~   81 (321)
T cd07420           2 LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENP   81 (321)
T ss_pred             CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccce
Confidence            78889999999999999999999999999999999999999999987677899999999999999999999999877778


Q ss_pred             eeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh---HHHHHHHHHHhccccccc
Q 008730          324 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS---ETFVELFAEVFCCLPLAH  400 (556)
Q Consensus       324 ~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~lP~~~  400 (556)
                      |||||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..||..+|+   ..+|+.+.++|++||++|
T Consensus        82 ~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaa  161 (321)
T cd07420          82 YVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLAT  161 (321)
T ss_pred             EEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceE
Confidence            99999999999999999999999999999999999999999999999999999999997   789999999999999999


Q ss_pred             ccCCeEEEEecccccCCCCChhhhhhcccCCC-----CCC----------------------ccchhhhhcCCCCCCCC-
Q 008730          401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCE-----PPE----------------------EGLMCELLWSDPQPLPG-  452 (556)
Q Consensus       401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~-----~~~----------------------~~~~~~llw~dp~~~~~-  452 (556)
                      +|++++||||||| ++ ..++++|+.++|+..     ++.                      .+.+.|+|||||.+..+ 
T Consensus       162 ii~~~i~cvHGGi-~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~  239 (321)
T cd07420         162 IIDNKILVVHGGI-SD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC  239 (321)
T ss_pred             EEcCCEEEEeCCC-CC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCC
Confidence            9999999999999 55 578999999988421     111                      14678999999997666 


Q ss_pred             CCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEE
Q 008730          453 RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIV  532 (556)
Q Consensus       453 ~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~  532 (556)
                      |.+++||.|+.||++++++||++||+++||||||++++||++.++++|+||||||||||..+|+||||.| +++++++|+
T Consensus       240 ~~~~~RG~g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~gavl~i-~~~~~~~f~  318 (321)
T cd07420         240 KPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYIKL-GPDLTPHFV  318 (321)
T ss_pred             CccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEEEEEE-CCCCceeEE
Confidence            6677899999999999999999999999999999999999999999999999999999999999999999 889999999


Q ss_pred             EEe
Q 008730          533 TFA  535 (556)
Q Consensus       533 ~~~  535 (556)
                      +|.
T Consensus       319 ~~~  321 (321)
T cd07420         319 QYQ  321 (321)
T ss_pred             EeC
Confidence            883

RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all

>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-76  Score=521.50  Aligned_cols=287  Identities=39%  Similarity=0.695  Sum_probs=277.1

Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeee
Q 008730          248 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN  327 (556)
Q Consensus       248 ~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vfl  327 (556)
                      ++++.|+..+.++-+++.++..||+.++++|..|.+++.++.|    +.|+||||||+.||+++|+..|-.|.++ |||+
T Consensus         5 d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tP----VTvCGDIHGQFyDL~eLFrtgG~vP~tn-YiFm   79 (306)
T KOG0373|consen    5 DLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTP----VTVCGDIHGQFYDLLELFRTGGQVPDTN-YIFM   79 (306)
T ss_pred             CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCC----eeEeeccchhHHHHHHHHHhcCCCCCcc-eEEe
Confidence            3678899999999999999999999999999999999999988    9999999999999999999998877554 9999


Q ss_pred             cccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeE
Q 008730          328 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV  406 (556)
Q Consensus       328 GD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~  406 (556)
                      |||||||..|+|++.+|+.||.+||.+|.+||||||.+.+...|||++||..||+ .+.|+.+.++|+.|+++|+|++++
T Consensus        80 GDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~v  159 (306)
T KOG0373|consen   80 GDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKV  159 (306)
T ss_pred             ccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcE
Confidence            9999999999999999999999999999999999999999999999999999996 589999999999999999999999


Q ss_pred             EEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecc
Q 008730          407 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHE  486 (556)
Q Consensus       407 ~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~  486 (556)
                      +|||||+ ||++.++++|+.++|..++|+++.+||++||||.+...|..++||+||.||.+++.+|...|++++|.|+||
T Consensus       160 LCVHGGL-SPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQ  238 (306)
T KOG0373|consen  160 LCVHGGL-SPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQ  238 (306)
T ss_pred             EEEcCCC-CccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHH
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCceEecCCe-EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCC
Q 008730          487 VKDEGYEIEHDGK-LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD  541 (556)
Q Consensus       487 ~~~~G~~~~~~~~-~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~  541 (556)
                      .+++||++.|+.| ++|||||||||.+++|.++||.+ +++++.++..|.++|...
T Consensus       239 LV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~-d~~~~r~~k~F~avpd~~  293 (306)
T KOG0373|consen  239 LVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSF-DDNLERETKIFSAVPDNS  293 (306)
T ss_pred             HHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEe-cccCCccceeeeecCCcc
Confidence            9999999999998 99999999999999999999999 899999999999987753

>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

Probab=100.00  E-value=1.9e-71  Score=545.36  Aligned_cols=283  Identities=42%  Similarity=0.764  Sum_probs=270.6

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730          249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  328 (556)
Q Consensus       249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG  328 (556)
                      ++++++++.+++.++.+++.+||+++.++|++||++++++.|    ++||||||||+.+|.++|+..++++. ++|||||
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~dL~~ll~~~~~~~~-~~~lfLG   76 (285)
T cd07415           2 LDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPD-TNYLFLG   76 (285)
T ss_pred             HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCC----EEEEEeCCCCHHHHHHHHHHcCCCCC-CeEEEEe
Confidence            577899999889999999999999999999999999999866    99999999999999999999998754 5699999


Q ss_pred             ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeEE
Q 008730          329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF  407 (556)
Q Consensus       329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~  407 (556)
                      ||||||++|+||+.+++++|+.+|++|++||||||.+.++..|||..||..+|+ ..+|+.+.++|..||++++++++++
T Consensus        77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~  156 (285)
T cd07415          77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIF  156 (285)
T ss_pred             EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEE
Confidence            999999999999999999999999999999999999999999999999999997 4899999999999999999999999


Q ss_pred             EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730          408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV  487 (556)
Q Consensus       408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~  487 (556)
                      |||||| +|...++++|+.++|+.+++.++.+.|+|||||.+..+|.+++||.|+.||++++++||++||+++||||||+
T Consensus       157 cvHgGi-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~  235 (285)
T cd07415         157 CVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQL  235 (285)
T ss_pred             EEcCCC-CCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCcc
Confidence            999999 8999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             cccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCC
Q 008730          488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP  538 (556)
Q Consensus       488 ~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~  538 (556)
                      +++||++.++++|+|||||||||+..+|+||+|.| +++++++|++|++.|
T Consensus       236 ~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i-~~~~~~~~~~~~~~~  285 (285)
T cd07415         236 VMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMEL-DEHLKRSFKVFEAAP  285 (285)
T ss_pred             ccceEEEecCCcEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeccCC
Confidence            99999999999999999999999999999999999 888999999998754

PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2

>cd07416 MPP_PP2B PP2B, metallophosphatase domain

Probab=100.00  E-value=5.2e-71  Score=548.17  Aligned_cols=288  Identities=42%  Similarity=0.758  Sum_probs=270.8

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730          249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  328 (556)
Q Consensus       249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG  328 (556)
                      ++-|++.+++++.+++.++.+||++|+++|++||++++++.|    ++||||||||+.+|.++|+..+.++ .++|||||
T Consensus         3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~----i~ViGDIHG~~~dL~~l~~~~g~~~-~~~ylFLG   77 (305)
T cd07416           3 IDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQFYDLLKLFEVGGSPA-NTRYLFLG   77 (305)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCC----EEEEEeCCCCHHHHHHHHHhcCCCC-CceEEEEC
Confidence            566889999999999999999999999999999999999876    9999999999999999999999875 46799999


Q ss_pred             ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEE
Q 008730          329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV  408 (556)
Q Consensus       329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~  408 (556)
                      ||||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||..|+..+|+..+|..+.++|.+||++++++++++|
T Consensus        78 DyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~i~~  157 (305)
T cd07416          78 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLC  157 (305)
T ss_pred             CccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCC-------CCCc-CCCCCccccCHHHHHHHHHHCCCCE
Q 008730          409 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSFGADVTKRFLQDNSLDL  480 (556)
Q Consensus       409 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~-~~rg~g~~fg~~~~~~fl~~~~~~~  480 (556)
                      ||||| +|...++++|++++|+.+++..++++|+|||||....       +|.+ ++||.|+.||++++++||++||+++
T Consensus       158 vHGGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~  236 (305)
T cd07416         158 VHGGL-SPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLS  236 (305)
T ss_pred             EcCCC-CcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeE
Confidence            99999 8999999999999999988889999999999997643       3554 4899999999999999999999999


Q ss_pred             EEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCc
Q 008730          481 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP  544 (556)
Q Consensus       481 iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (556)
                      ||||||++++||++++++      +||||||||||||..+|+||+|.| +++ .++|.+|.++|||.+.|
T Consensus       237 iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i-~~~-~~~~~~~~~~~~~~~~~  304 (305)
T cd07416         237 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLP  304 (305)
T ss_pred             EEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEE-cCC-cceEEEecCCCCCCCCC
Confidence            999999999999999886      999999999999999999999999 555 46999999999999987

PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G

>PTZ00480 serine/threonine-protein phosphatase; Provisional

Probab=100.00  E-value=1.1e-70  Score=543.01  Aligned_cols=285  Identities=36%  Similarity=0.759  Sum_probs=267.0

Q ss_pred             HHHHHHHhhcCC--------CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC
Q 008730          249 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE  320 (556)
Q Consensus       249 i~~~i~~~~~~~--------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~  320 (556)
                      ++++++.+...+        .++..++.+||+++.++|++||++++++.|    ++|||||||++.+|.++|+..++++.
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~----i~vvGDIHG~~~dL~~l~~~~g~~~~   86 (320)
T PTZ00480         11 VDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPE   86 (320)
T ss_pred             HHHHHHHHHhccccCccccCCCCHHHHHHHHHHHHHHHHhCCceEecCCC----eEEEeecccCHHHHHHHHHhcCCCCc
Confidence            555555554332        588999999999999999999999999866    99999999999999999999999865


Q ss_pred             CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH  400 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~  400 (556)
                       ++|||||||||||++|+||+.+++.+|+.+|++|++||||||.+.++..|||..|+..+|+..+|..+.++|..||++|
T Consensus        87 -~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaA  165 (320)
T PTZ00480         87 -SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAA  165 (320)
T ss_pred             -ceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhh
Confidence             5699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCC
Q 008730          401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLD  479 (556)
Q Consensus       401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~  479 (556)
                      +|++++||||||| +|...++++|+.+.||.+.+..++++|+|||||.+. .+|.+++||.|+.||++++++||++||++
T Consensus       166 iI~~~i~cvHGGI-~p~~~~l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~  244 (320)
T PTZ00480        166 LIDEKILCMHGGL-SPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELD  244 (320)
T ss_pred             eecCcEEEEcCCc-CcccCCHHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCc
Confidence            9999999999999 899999999999999999999999999999999864 68999999999999999999999999999


Q ss_pred             EEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730          480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP  540 (556)
Q Consensus       480 ~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~  540 (556)
                      +||||||++++||++.++++|+||||||||||..+|+||+|.| +++++++|++|++.+..
T Consensus       245 ~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i-~~~~~~~~~~~~p~~~~  304 (320)
T PTZ00480        245 LICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTI-DESLMCSFQILKPAEQG  304 (320)
T ss_pred             EEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEE-CCCCcEeEEEecCCccc
Confidence            9999999999999999999999999999999999999999999 88999999999876554

>PTZ00239 serine/threonine protein phosphatase 2A; Provisional

Probab=100.00  E-value=8.5e-71  Score=543.09  Aligned_cols=285  Identities=40%  Similarity=0.692  Sum_probs=270.3

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730          249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  328 (556)
Q Consensus       249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG  328 (556)
                      ++++++.+++++.++..++.+||++|.++|++||++++++.|    ++||||||||+.+|.++|+..+.++ .++|||||
T Consensus         3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~~L~~l~~~~~~~~-~~~~lfLG   77 (303)
T PTZ00239          3 IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDLQALFKEGGDIP-NANYIFIG   77 (303)
T ss_pred             HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCC----EEEEEeCCCCHHHHHHHHHhcCCCC-CceEEEee
Confidence            677889999889999999999999999999999999999866    9999999999999999999998875 45699999


Q ss_pred             ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH-HHHHHHHHHhcccccccccCCeEE
Q 008730          329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF  407 (556)
Q Consensus       329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~lP~~~~i~~~~~  407 (556)
                      ||||||++|+||+.+++++|+.+|.+|++||||||.+.++..|||..|+..+|+. .+|+.+.++|+.||++++++++++
T Consensus        78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~  157 (303)
T PTZ00239         78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQIL  157 (303)
T ss_pred             eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEE
Confidence            9999999999999999999999999999999999999999999999999999974 789999999999999999999999


Q ss_pred             EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730          408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV  487 (556)
Q Consensus       408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~  487 (556)
                      |||||| +|...++++|+.++|+.+++.++.++|+|||||.+..+|.+++||.|+.||++++++||++||+++||||||+
T Consensus       158 cvHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~  236 (303)
T PTZ00239        158 CVHGGL-SPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQL  236 (303)
T ss_pred             EEcCcc-CcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChh
Confidence            999999 8999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             cccCceEecCC-eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730          488 KDEGYEIEHDG-KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP  540 (556)
Q Consensus       488 ~~~G~~~~~~~-~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~  540 (556)
                      +++||++.+++ +|+|||||||||+..+|+||+|.| +++++++|++|+++++.
T Consensus       237 ~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i-~~~~~~~~~~~~~~~~~  289 (303)
T PTZ00239        237 VMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCL-DENLQQTWKTFKEVPES  289 (303)
T ss_pred             hccceEEEeCCCeEEEEECCCcccCCCCceEEEEEE-CCCCcEeeEEeeCCCcc
Confidence            99999987654 599999999999999999999999 88999999999998764

>cd07418 MPP_PP7 PP7, metallophosphatase domain

Probab=100.00  E-value=2.6e-70  Score=548.16  Aligned_cols=302  Identities=42%  Similarity=0.760  Sum_probs=274.8

Q ss_pred             CCHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHH
Q 008730          244 ITLDFVKKMMDDFKNQ----------KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE  313 (556)
Q Consensus       244 it~~~i~~~i~~~~~~----------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~  313 (556)
                      +|.++++.|+..+++.          ..++..++.+||.+|.++|++||++++|+.+...+++||||||||+.+|.++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~   86 (377)
T cd07418           7 LTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLE   86 (377)
T ss_pred             cCHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHH
Confidence            7999999999999776          347899999999999999999999999986655679999999999999999999


Q ss_pred             hcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH---HHHHHHH
Q 008730          314 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFA  390 (556)
Q Consensus       314 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~---~~~~~~~  390 (556)
                      ..|+++.++.|||||||||||++|+||+.+|+.+|+.+|++|++||||||.+.++..|||..|+..+|+.   .+++.+.
T Consensus        87 ~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~  166 (377)
T cd07418          87 DAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCL  166 (377)
T ss_pred             HhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHH
Confidence            9999876667999999999999999999999999999999999999999999999999999999999964   7999999


Q ss_pred             HHhcccccccccCCeEEEEecccc--------------------------cCCCCChhhhhhcccC-CCCCCcc---chh
Q 008730          391 EVFCCLPLAHVLNQKVFVVHGGLF--------------------------SVDGVKLSDIKTIDRF-CEPPEEG---LMC  440 (556)
Q Consensus       391 ~~~~~lP~~~~i~~~~~~vHgGi~--------------------------~~~~~~~~~i~~~~r~-~~~~~~~---~~~  440 (556)
                      ++|++||+++++++++|||||||+                          +|...++++|+.++|+ .+++..+   +++
T Consensus       167 ~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~  246 (377)
T cd07418         167 GCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPG  246 (377)
T ss_pred             HHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccce
Confidence            999999999999999999999994                          2345689999999997 4666554   478


Q ss_pred             hhhcCCCCCCCCCCcC-CCCCccccCHHHHHHHHHHCCCCEEEeeccc------------cccCceEecC---CeEEEEe
Q 008730          441 ELLWSDPQPLPGRGPS-KRGVGLSFGADVTKRFLQDNSLDLVVRSHEV------------KDEGYEIEHD---GKLITVF  504 (556)
Q Consensus       441 ~llw~dp~~~~~~~~~-~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~------------~~~G~~~~~~---~~~itvf  504 (556)
                      |+|||||....++.++ .||.|+.||++++++||++|++++||||||+            +++||++.++   ++|+|||
T Consensus       247 dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTvF  326 (377)
T cd07418         247 DVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLF  326 (377)
T ss_pred             eeEeeCCccCCCCCccCCCCCccccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEEe
Confidence            9999999988887765 7999999999999999999999999999996            6899999887   9999999


Q ss_pred             cCCCCC------CCCCCeEEEEEEecCC-CceeEEEEecC-CCCCCCcc
Q 008730          505 SAPNYC------DQMGNKGAFIRFEAPT-LKPNIVTFAAV-PHPDVKPM  545 (556)
Q Consensus       505 Sa~~y~------~~~~n~~a~~~~~~~~-~~~~~~~~~~~-~~~~~~~~  545 (556)
                      ||||||      +.++|+||++.|+.++ ..++|++|+++ |+|...|.
T Consensus       327 Sa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (377)
T cd07418         327 SAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAVKPRPKANPY  375 (377)
T ss_pred             cCCccccccccccccCcceEEEEEecCCCCCccceEeeccCCCCCCCcC
Confidence            999999      5789999999996655 58999999998 99998875

PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,

>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional

Probab=100.00  E-value=1.2e-69  Score=533.46  Aligned_cols=269  Identities=40%  Similarity=0.777  Sum_probs=257.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHH
Q 008730          261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV  340 (556)
Q Consensus       261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~  340 (556)
                      .++..++.+||.++.++|++||++++++.|    ++||||||||+.+|.++|+..++++. ++|+|||||||||++|+||
T Consensus        24 ~i~~~~i~~l~~~~~~il~~e~~ll~i~~p----~~ViGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s~ev   98 (294)
T PTZ00244         24 LIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGFPPY-SNYLFLGDYVDRGKHSVET   98 (294)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCeEeccCC----ceeeccCCCCHHHHHHHHHHcCCCCc-ccEEEeeeEecCCCCHHHH
Confidence            588999999999999999999999999876    99999999999999999999999764 4599999999999999999


Q ss_pred             HHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCC
Q 008730          341 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK  420 (556)
Q Consensus       341 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~  420 (556)
                      +.+++++|+.+|.++++||||||.+.++..|||..++..+|+..+|..+.++|+.||++++++++++|||||+ +|...+
T Consensus        99 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~il~vHgGi-~p~~~~  177 (294)
T PTZ00244         99 ITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTS  177 (294)
T ss_pred             HHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCeeEEEcCCC-CchhhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 888889


Q ss_pred             hhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCe
Q 008730          421 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK  499 (556)
Q Consensus       421 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~  499 (556)
                      +++++.++|+.+.+..++++|+|||||... .+|.+++||.|+.||++++++||++||+++||||||++++||+++++++
T Consensus       178 l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~  257 (294)
T PTZ00244        178 LASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQ  257 (294)
T ss_pred             HHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCe
Confidence            999999999999889999999999999864 6899999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730          500 LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA  536 (556)
Q Consensus       500 ~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~  536 (556)
                      |+||||||||||..+|+||+|.| +++++++|++|.+
T Consensus       258 ~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~f~~~~~  293 (294)
T PTZ00244        258 LVTVFSAPNYCGEFDNDAAVMNI-DDKLQCSFLIIPA  293 (294)
T ss_pred             EEEEeCCccccCCCCceEEEEEE-CCCCcEeEEEeec
Confidence            99999999999999999999999 8899999998865

>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain

Probab=100.00  E-value=2.9e-69  Score=531.95  Aligned_cols=269  Identities=42%  Similarity=0.830  Sum_probs=257.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHH
Q 008730          261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV  340 (556)
Q Consensus       261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~  340 (556)
                      .++++++.+||+++.++|++||++++++.|    ++||||||||+.+|.++|+..++++. ++|||||||||||++|+||
T Consensus        22 ~~~~~~i~~l~~~~~~il~~ep~~l~i~~~----i~viGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s~e~   96 (293)
T cd07414          22 QLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE-SNYLFLGDYVDRGKQSLET   96 (293)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCeEecCCc----eEEEEecCCCHHHHHHHHHhcCCCCc-ceEEEEeeEecCCCCcHHH
Confidence            588999999999999999999999999876    99999999999999999999999764 5699999999999999999


Q ss_pred             HHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCC
Q 008730          341 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK  420 (556)
Q Consensus       341 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~  420 (556)
                      +.+++++|+.+|.++++||||||.+.++..|||..|+..+|+..+|..+.++|++||++++++++++|||||+ +|...+
T Consensus        97 i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi-~p~~~~  175 (293)
T cd07414          97 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQS  175 (293)
T ss_pred             HHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCcEEEEccCC-CcccCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCe
Q 008730          421 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK  499 (556)
Q Consensus       421 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~  499 (556)
                      +++|+.++|+.+.+..++++|+|||||... .+|.+++||.|+.||++++++||++||+++||||||++++||++.++++
T Consensus       176 l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~  255 (293)
T cd07414         176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQ  255 (293)
T ss_pred             HHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCc
Confidence            999999999998889999999999999864 6889999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730          500 LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA  536 (556)
Q Consensus       500 ~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~  536 (556)
                      |+||||||||||..+|+||+|.| +++++++|++|++
T Consensus       256 ~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~~~~~~~  291 (293)
T cd07414         256 LVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKP  291 (293)
T ss_pred             EEEEecCCcccCCCCceEEEEEE-CCCCcEEEEEecC
Confidence            99999999999999999999999 8899999999874

PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg

>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.4e-69  Score=536.62  Aligned_cols=270  Identities=41%  Similarity=0.792  Sum_probs=261.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCChHH
Q 008730          261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVE  339 (556)
Q Consensus       261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e  339 (556)
                      .+++.++.++|..+.++|..+|++++++.|    |.|+||||||+.||.++|...| +|+. .+|||||||||||++|+|
T Consensus        31 ~l~~~ei~~l~~~~~~if~~~~~l~e~~aP----V~i~GDiHGq~~DLlrlf~~~g~~pp~-~~ylFLGDYVDRG~~slE  105 (331)
T KOG0374|consen   31 PLSKSEIIKLCDKAREIFLSQPTLLELSAP----VKIVGDIHGQFGDLLRLFDLLGSFPPD-QNYVFLGDYVDRGKQSLE  105 (331)
T ss_pred             eccHHHHHHHHHHHHHHhcCCCceeecCCC----EEEEccCcCCHHHHHHHHHhcCCCCCc-ccEEEecccccCCccceE
Confidence            388899999999999999999999999988    9999999999999999999999 7754 459999999999999999


Q ss_pred             HHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeEEEEecccccCCC
Q 008730          340 VILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG  418 (556)
Q Consensus       340 ~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~  418 (556)
                      |+.+|+++|++||++|++||||||.+.++..|||++||.++|+ ..+|+.|++.|+.||++++|+++|+|+|||+ ||..
T Consensus       106 ~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGl-sp~l  184 (331)
T KOG0374|consen  106 TICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGL-SPHL  184 (331)
T ss_pred             EeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCC-Chhh
Confidence            9999999999999999999999999999999999999999999 6999999999999999999999999999999 9999


Q ss_pred             CChhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecC
Q 008730          419 VKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHD  497 (556)
Q Consensus       419 ~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~  497 (556)
                      .++++|+.|.||.+.++.++++||+||||... .+|.++.||.++.||++++++||+++++++||||||++++||+++.+
T Consensus       185 ~~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~  264 (331)
T KOG0374|consen  185 KSLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAG  264 (331)
T ss_pred             cChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecC
Confidence            99999999999999999999999999999876 79999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecC
Q 008730          498 GKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV  537 (556)
Q Consensus       498 ~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~  537 (556)
                      ++++||||||+|||.+.|.||+|.| ++++.++|..+.+.
T Consensus       265 r~lvTIFSAP~Ycg~~~n~gavm~V-d~~l~~sf~~l~p~  303 (331)
T KOG0374|consen  265 RKLVTIFSAPNYCGEFDNAGAVMRV-DKNLKCSFVILRPE  303 (331)
T ss_pred             ceEEEEecCchhccccCCceEEEEE-CCCCeEEEEEeccc
Confidence            9999999999999999999999999 99999999999884

>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]

Probab=100.00  E-value=2.8e-70  Score=518.47  Aligned_cols=288  Identities=41%  Similarity=0.751  Sum_probs=270.5

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730          249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  328 (556)
Q Consensus       249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG  328 (556)
                      .+-+-+++...++++++..+.++.++..+|++|+++++|+.|    |.|+|||||||.||+++|+..|-|. +.+|+|||
T Consensus        48 ~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~AP----iTVCGDIHGQf~DLmKLFEVGG~PA-~t~YLFLG  122 (517)
T KOG0375|consen   48 HDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAP----ITVCGDIHGQFFDLMKLFEVGGSPA-NTRYLFLG  122 (517)
T ss_pred             hHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCC----eeEecccchHHHHHHHHHHccCCcc-cceeEeec
Confidence            445677888888999999999999999999999999999998    9999999999999999999988765 55699999


Q ss_pred             ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEE
Q 008730          329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV  408 (556)
Q Consensus       329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~  408 (556)
                      ||||||.+|+||+.+|.+||+.||..+++||||||++.++.++.|..||..||++++|+.+.+.|+.||++|+.+++++|
T Consensus       123 DYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQflC  202 (517)
T KOG0375|consen  123 DYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQFLC  202 (517)
T ss_pred             cccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCC--------CCcCCCCCccccCHHHHHHHHHHCCCCE
Q 008730          409 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVGLSFGADVTKRFLQDNSLDL  480 (556)
Q Consensus       409 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~--------~~~~~rg~g~~fg~~~~~~fl~~~~~~~  480 (556)
                      ||||+ ||.+.+++||++++|+.+||..+.+||||||||.+..|        .+++.||++|.|...++++||+.||+--
T Consensus       203 VHGGl-SPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLLS  281 (517)
T KOG0375|consen  203 VHGGL-SPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLLS  281 (517)
T ss_pred             ecCCC-CcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCchh
Confidence            99999 99999999999999999999999999999999987543        3577899999999999999999999999


Q ss_pred             EEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCc
Q 008730          481 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP  544 (556)
Q Consensus       481 iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (556)
                      |||+||.++.||..+...      .+|||||||||-+.++|++|||.-+++  ...|.||..+|||.|.|
T Consensus       282 IiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnN--VMNIRQFncSPHPYWLP  349 (517)
T KOG0375|consen  282 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENN--VMNIRQFNCSPHPYWLP  349 (517)
T ss_pred             hhhhhhhhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhcc--cceeeccCCCCCCcccc
Confidence            999999999999987754      489999999999999999999999444  45788999999999988

>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain

Probab=100.00  E-value=1.4e-67  Score=516.91  Aligned_cols=267  Identities=49%  Similarity=0.901  Sum_probs=254.8

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHH
Q 008730          263 HKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL  342 (556)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~  342 (556)
                      +++++.+||+++.++|++||++++++.|    ++||||||||+.+|.++|+..+.++ .++|||||||||||++|+||+.
T Consensus         2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDiHG~~~~l~~ll~~~~~~~-~~~~vfLGD~VDrG~~s~e~l~   76 (271)
T smart00156        2 YAEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDLNGPPP-DTNYVFLGDYVDRGPFSIEVIL   76 (271)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCcCCHHHHHHHHHHcCCCC-CceEEEeCCccCCCCChHHHHH
Confidence            5678999999999999999999999865    9999999999999999999999865 5679999999999999999999


Q ss_pred             HHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChh
Q 008730          343 TLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLS  422 (556)
Q Consensus       343 ~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~  422 (556)
                      +++.+|+.+|++|++||||||.+.++..|||..|+..+|+..+|+.+.++|++||++++++++++|||||+ +|...+++
T Consensus        77 ~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi-~~~~~~l~  155 (271)
T smart00156       77 LLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGL-SPDLTTLD  155 (271)
T ss_pred             HHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCC-CCccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 88999999


Q ss_pred             hhhhcccCCCCCCccchhhhhcCCCC-CCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEE
Q 008730          423 DIKTIDRFCEPPEEGLMCELLWSDPQ-PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLI  501 (556)
Q Consensus       423 ~i~~~~r~~~~~~~~~~~~llw~dp~-~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~i  501 (556)
                      +|+.++|+.+.+.++.++|+|||||. ...+|.+++||.|+.||++++++||++||+++||||||++++||++.++++|+
T Consensus       156 ~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~  235 (271)
T smart00156      156 DIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLV  235 (271)
T ss_pred             HHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEE
Confidence            99999999988899999999999995 45689999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730          502 TVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA  536 (556)
Q Consensus       502 tvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~  536 (556)
                      |||||||||+..+|+||++.| +++.+++|.+|++
T Consensus       236 TvfSa~~y~~~~~n~~a~~~i-~~~~~~~~~~~~~  269 (271)
T smart00156      236 TIFSAPNYCGRFGNKAAVLKV-DKDLKLSFEQFKP  269 (271)
T ss_pred             EEECCcccccCCCceEEEEEE-CCCCcEEEEEecC
Confidence            999999999989999999999 8899999999975

Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.

>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain

Probab=100.00  E-value=8.5e-65  Score=506.33  Aligned_cols=270  Identities=36%  Similarity=0.643  Sum_probs=250.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC-------CCCeeeecccccC
Q 008730          261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE-------ENPYLFNGDFVDR  333 (556)
Q Consensus       261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~-------~~~~vflGD~vdr  333 (556)
                      .++.+++..||+++.++|++||++++++.|    ++||||||||+++|.++|+..++++.       +.+||||||||||
T Consensus        20 ~~~~~~i~~l~~~~~~il~~e~~~~~i~~~----~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDR   95 (311)
T cd07419          20 FFNWNEILELCDAAEDIFKQEPMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDR   95 (311)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCeEeeCCC----EEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCC
Confidence            478899999999999999999999999866    99999999999999999999998754       2469999999999


Q ss_pred             CCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH------HHHHHHHHHhcccccccccCCeEE
Q 008730          334 GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE------TFVELFAEVFCCLPLAHVLNQKVF  407 (556)
Q Consensus       334 G~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~lP~~~~i~~~~~  407 (556)
                      |++|+||+.+|+++++.+|++|++||||||.+.++..|||..++..+++.      .+|..+.++|++||++++++++++
T Consensus        96 Gp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l  175 (311)
T cd07419          96 GSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKIL  175 (311)
T ss_pred             CCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEE
Confidence            99999999999999999999999999999999999999999999998864      689999999999999999999999


Q ss_pred             EEecccccCCCCChhhhhhcccCC-CCCCccchhhhhcCCCCCC---CCCCcCC---CCCc--cccCHHHHHHHHHHCCC
Q 008730          408 VVHGGLFSVDGVKLSDIKTIDRFC-EPPEEGLMCELLWSDPQPL---PGRGPSK---RGVG--LSFGADVTKRFLQDNSL  478 (556)
Q Consensus       408 ~vHgGi~~~~~~~~~~i~~~~r~~-~~~~~~~~~~llw~dp~~~---~~~~~~~---rg~g--~~fg~~~~~~fl~~~~~  478 (556)
                      |||||| +|...++++|+.+.|+. ..+..+.++|++||||...   .++.+++   ||.|  +.||++++++||++||+
T Consensus       176 ~vHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l  254 (311)
T cd07419         176 CMHGGI-GRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDL  254 (311)
T ss_pred             EEccCC-CCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCC
Confidence            999999 89999999999999996 5566778999999999864   3666666   9999  69999999999999999


Q ss_pred             CEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730          479 DLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA  536 (556)
Q Consensus       479 ~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~  536 (556)
                      ++||||||++++||++.++++|+|||||||||+..+|.||++.| ++++++++.++++
T Consensus       255 ~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i-~~~~~~~~~~~~~  311 (311)
T cd07419         255 QMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVL-GRDLTIIPKLIHP  311 (311)
T ss_pred             eEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeCC
Confidence            99999999999999999999999999999999999999999999 8899999988864

Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most

>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-66  Score=473.19  Aligned_cols=287  Identities=38%  Similarity=0.689  Sum_probs=275.4

Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeee
Q 008730          247 DFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLF  326 (556)
Q Consensus       247 ~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vf  326 (556)
                      .+++..++++...+.++++.+..+|..++++|.+++++..+..|    ++|+||+||||++|.++|+..|..+.. .|+|
T Consensus        18 ~~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~p----vtvcGDvHGqf~dl~ELfkiGG~~pdt-nylf   92 (319)
T KOG0371|consen   18 LDVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCP----VTVCGDVHGQFHDLIELFKIGGLAPDT-NYLF   92 (319)
T ss_pred             cccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccc----eEEecCcchhHHHHHHHHHccCCCCCc-ceee
Confidence            44778899999999999999999999999999999999999987    999999999999999999887777655 5999


Q ss_pred             ecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCe
Q 008730          327 NGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQK  405 (556)
Q Consensus       327 lGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~  405 (556)
                      +|||||||++|+|++.+|.++|++||++|.+||||||.+.++..|||++||.+||+ ..+|+.|.+.|+.+|+.+.|+++
T Consensus        93 mGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~  172 (319)
T KOG0371|consen   93 MGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESK  172 (319)
T ss_pred             eeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccc
Confidence            99999999999999999999999999999999999999999999999999999995 58999999999999999999999


Q ss_pred             EEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeec
Q 008730          406 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSH  485 (556)
Q Consensus       406 ~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H  485 (556)
                      |||.|||+ ||.+.+++.++.++|..+.|.++.+||||||||.+..||..++||.|+.||.+..+.|-.+||+++|-|+|
T Consensus       173 ifc~HGgL-spsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~lslisRah  251 (319)
T KOG0371|consen  173 IFCLHGGL-SPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAH  251 (319)
T ss_pred             eeeccCCc-CcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHH
Confidence            99999999 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730          486 EVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP  540 (556)
Q Consensus       486 ~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~  540 (556)
                      |.+++||.|.+...++|||||||||...+|.+|++.+ +++....|.||+++|.+
T Consensus       252 qlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~-d~~~~~~f~q~~psp~k  305 (319)
T KOG0371|consen  252 QLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMER-DDTKNYDFLQFDPSPRK  305 (319)
T ss_pred             HHHhcccceeeecceeEEccCCchhhccccHHHHhhh-hhccCcceEEecCCccc
Confidence            9999999999999999999999999999999999999 89999999999997764

>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-66  Score=499.87  Aligned_cols=317  Identities=39%  Similarity=0.735  Sum_probs=293.0

Q ss_pred             cccccCCCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCH
Q 008730          226 LELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF  305 (556)
Q Consensus       226 ~~~~~~~~~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~  305 (556)
                      .+++++.+|+||+|+.+ ++...++.|++.|+.+++++..||+.++.+++++|+..|++-+|+...+..|.||||+||.+
T Consensus        99 ~sidv~d~y~Gp~ls~P-l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGkl  177 (631)
T KOG0377|consen   99 TSIDVPDSYNGPKLSLP-LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKL  177 (631)
T ss_pred             cceecCccCCCcccccC-cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccc
Confidence            46789999999999997 99999999999999999999999999999999999999999999988888999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhh---h
Q 008730          306 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL---S  382 (556)
Q Consensus       306 ~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~---~  382 (556)
                      +||.-+|-+.|+|+..+.|||.||+||||.+|+|||..|+++-+.||..+|+-|||||..++|..|||-.|+..||   +
T Consensus       178 DDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~  257 (631)
T KOG0377|consen  178 DDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHG  257 (631)
T ss_pred             cceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999   6


Q ss_pred             HHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCC-----CCC-----------------Cccchh
Q 008730          383 ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPP-----------------EEGLMC  440 (556)
Q Consensus       383 ~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-----~~~-----------------~~~~~~  440 (556)
                      .++.+.+.++|++||++.+|+.+||+||||| | +.++++-+.+|+|..     .||                 +...+.
T Consensus       258 k~Ilr~leevy~WLPi~tiid~~ilvvHGGi-S-d~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~  335 (631)
T KOG0377|consen  258 KRILRFLEEVYRWLPIGTIIDSRILVVHGGI-S-DSTDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIF  335 (631)
T ss_pred             cHHHHHHHHHHHhcchhhhcccceEEEecCc-c-cchhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHH
Confidence            7899999999999999999999999999999 4 567788888887751     122                 123567


Q ss_pred             hhhcCCCCCCCCCCc-CCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEE
Q 008730          441 ELLWSDPQPLPGRGP-SKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAF  519 (556)
Q Consensus       441 ~llw~dp~~~~~~~~-~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~  519 (556)
                      |++||||....|..| --||.|++||+|++..||++.+++++||+|||.++||+++||+||+|||||+||.....|+||+
T Consensus       336 DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAY  415 (631)
T KOG0377|consen  336 DIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAY  415 (631)
T ss_pred             HHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceE
Confidence            899999998887554 5799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCceeEEEEecCCCCCCCccc
Q 008730          520 IRFEAPTLKPNIVTFAAVPHPDVKPMA  546 (556)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (556)
                      +.+ ++.+.|.|+||.+....+..|++
T Consensus       416 ikl-~~~~~PhfvQY~a~k~t~~~tlr  441 (631)
T KOG0377|consen  416 IKL-GNQLTPHFVQYQAAKQTKRLTLR  441 (631)
T ss_pred             EEe-CCCCCchHHHHHhhhhhhhhhHH
Confidence            999 99999999999987766666654

>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=100.00  E-value=8.2e-34  Score=274.41  Aligned_cols=213  Identities=49%  Similarity=0.758  Sum_probs=174.6

Q ss_pred             eEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchh
Q 008730          296 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG  375 (556)
Q Consensus       296 ~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~  375 (556)
                      +|||||||++++|.++++..+.. ..+++||+|||||||+.+.+|+.+++.++.. |.++++|+||||.+.+....++..
T Consensus         1 ~~igDiHg~~~~l~~~l~~~~~~-~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~   78 (225)
T cd00144           1 YVIGDIHGCLDDLLRLLEKIGFP-PNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYD   78 (225)
T ss_pred             CEEeCCCCCHHHHHHHHHHhCCC-CCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcc
Confidence            58999999999999999999885 4567999999999999999999999999877 899999999999999887766554


Q ss_pred             hH---------HhhhhHHHHHHHHHHhcccccccccCC-eEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcC
Q 008730          376 EV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS  445 (556)
Q Consensus       376 ~~---------~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~  445 (556)
                      +.         .......++..+.+++..||+++.++. +++|||||+ +|.........      ..+.+....+++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~-~~~~~~~~~~~------~~~~~~~~~~~lw~  151 (225)
T cd00144          79 EDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGL-SPGLPLEEQIK------EEPEDQLPEDLLWS  151 (225)
T ss_pred             hhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCC-CCccchHHhhh------cCcccccceeeeec
Confidence            32         223356788888999999999999886 999999999 66544333332      23345567899999


Q ss_pred             CCCCCCC-CCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 008730          446 DPQPLPG-RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR  521 (556)
Q Consensus       446 dp~~~~~-~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~  521 (556)
                      +|..... ...+.|+.    |++.+..|++.++.+.|||||+++..|+.+..+++++||+|++.|++..+|..+++.
T Consensus       152 r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~  224 (225)
T cd00144         152 DPLELPGGFGSSRRGG----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALV  224 (225)
T ss_pred             CCCCCCCCCcCCCCCC----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCccEEEEe
Confidence            9976543 22333333    999999999999999999999999999877788999999999999877788777654

The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate

>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain

Probab=99.93  E-value=8.6e-26  Score=213.89  Aligned_cols=176  Identities=20%  Similarity=0.294  Sum_probs=130.3

Q ss_pred             eEeccCCCCHHHHHHHHHhcCC-------CCCCCCeeeecccccCCCChHHHHHHHHhcccc---CCCeEEEeccccccc
Q 008730          296 TVCGDVHGQFYDLLNIFELNGL-------PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---CPSAIYLSRGNHESK  365 (556)
Q Consensus       296 ~vigDiHG~~~~l~~~l~~~~~-------~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~---~p~~v~~lrGNHE~~  365 (556)
                      +||||||||++.|.++|+..++       ....+.+||+||+||||+++.+|+.+|+.++..   .+.++++|+||||.+
T Consensus         1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~   80 (208)
T cd07425           1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM   80 (208)
T ss_pred             CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence            5899999999999999998875       235678999999999999999999999999743   467899999999999


Q ss_pred             ccccccCchh-hHHhhhhH------HH---HHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCC
Q 008730          366 SMNKIYGFEG-EVRSKLSE------TF---VELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE  435 (556)
Q Consensus       366 ~~~~~~g~~~-~~~~~~~~------~~---~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~  435 (556)
                      .+...+.+.. ........      ..   ...+.+|++.+|+...++ +++|||||+ +                    
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~-~--------------------  138 (208)
T cd07425          81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGL-G--------------------  138 (208)
T ss_pred             HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCc-H--------------------
Confidence            9875543321 11111111      11   123478999999999877 688899998 2                    


Q ss_pred             ccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecC
Q 008730          436 EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSA  506 (556)
Q Consensus       436 ~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa  506 (556)
                            .+|++.-...   ...    ..-|...+.++++.++.++||+||++++.|....++|++++|.+.
T Consensus       139 ------~~w~r~y~~~---~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g  196 (208)
T cd07425         139 ------PLWYRGYSKE---TSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG  196 (208)
T ss_pred             ------HHHhhHhhhh---hhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence                  2343210000   000    001235788899999999999999999988877899999999974

This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal

>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional

Probab=99.93  E-value=2e-25  Score=217.19  Aligned_cols=122  Identities=25%  Similarity=0.459  Sum_probs=97.4

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCC--------CCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLP--------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~--------~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      ++++||||||||++.|.++|+++++.        +..+++|||||||||||+|.|||.+++.+.  .+.++++||||||.
T Consensus         1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~   78 (245)
T PRK13625          1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN   78 (245)
T ss_pred             CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence            36899999999999999999998874        346789999999999999999999999885  45689999999999


Q ss_pred             cccccccCc-------hhhHHhhh-------hHHHHHHHHHHhcccccccccC-CeEEEEecccccCC
Q 008730          365 KSMNKIYGF-------EGEVRSKL-------SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVD  417 (556)
Q Consensus       365 ~~~~~~~g~-------~~~~~~~~-------~~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~~~~  417 (556)
                      +++....+-       ..+....|       ...+.+.+.+|++.+|++..++ ++++|||||+ .|.
T Consensus        79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~-~~~  145 (245)
T PRK13625         79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGI-RQD  145 (245)
T ss_pred             HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCC-ChH
Confidence            887654321       11222223       1346778899999999998773 5799999999 443

>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain

Probab=99.91  E-value=1e-23  Score=201.98  Aligned_cols=115  Identities=24%  Similarity=0.270  Sum_probs=91.1

Q ss_pred             eEeccCCCCHHHHHHHHHhcCCC-------CCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccc
Q 008730          296 TVCGDVHGQFYDLLNIFELNGLP-------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN  368 (556)
Q Consensus       296 ~vigDiHG~~~~l~~~l~~~~~~-------~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~  368 (556)
                      +||||||||++.|.++|+++++.       +..+++|||||||||||+|.+||++|+.+..  +.++++|+||||.+++.
T Consensus         2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll~   79 (222)
T cd07413           2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAIA   79 (222)
T ss_pred             EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHHH
Confidence            69999999999999999998875       2356899999999999999999999999863  45899999999998875


Q ss_pred             cccCc------------h-----hhHHhhhh--HHHHHHHHHHhcccccccccCCeEEEEeccc
Q 008730          369 KIYGF------------E-----GEVRSKLS--ETFVELFAEVFCCLPLAHVLNQKVFVVHGGL  413 (556)
Q Consensus       369 ~~~g~------------~-----~~~~~~~~--~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi  413 (556)
                      ...+-            .     .+....+.  .+..+.+.+||+.||+....+ +++|||||+
T Consensus        80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~  142 (222)
T cd07413          80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLG-GVRVVHACW  142 (222)
T ss_pred             hhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEEC-CEEEEECCc
Confidence            43221            0     01122221  244577889999999998865 799999998

PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of

>PRK00166 apaH diadenosine tetraphosphatase; Reviewed

Probab=99.90  E-value=3.2e-23  Score=203.04  Aligned_cols=216  Identities=19%  Similarity=0.274  Sum_probs=140.4

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      ++++||||||||++.|.++++++++.+..+.+||+||+|||||+|.||+.++..+    +.++++|+||||.+.+...+|
T Consensus         1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g   76 (275)
T PRK00166          1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAG   76 (275)
T ss_pred             CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcC
Confidence            4689999999999999999999988666788999999999999999999999887    357899999999988877666


Q ss_pred             chhh----HHhhh-hHHHHHHHHHHhccccccccc-CCeEEEEecccccCCCCChhhhhhccc----CC-CCCCccchhh
Q 008730          373 FEGE----VRSKL-SETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDR----FC-EPPEEGLMCE  441 (556)
Q Consensus       373 ~~~~----~~~~~-~~~~~~~~~~~~~~lP~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r----~~-~~~~~~~~~~  441 (556)
                      +...    ....+ .....+.+.+|++.+|+...+ ++++++||||+ +|.. ++++.....+    .. .+....++..
T Consensus        77 ~~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi-~p~~-~~~~~~~~a~eve~~l~~~~~~~~~~~  154 (275)
T PRK00166         77 IKRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGI-PPQW-DLATALALAREVEAVLRSDDYRDFLAN  154 (275)
T ss_pred             CccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            4311    11111 122345578999999998876 56899999999 5553 3333222211    11 1112234555


Q ss_pred             hhcCCCCCCCCCCcCCCCCc-cccCHHHHH--HHHHH-----------------------------CCCCEEEeeccccc
Q 008730          442 LLWSDPQPLPGRGPSKRGVG-LSFGADVTK--RFLQD-----------------------------NSLDLVVRSHEVKD  489 (556)
Q Consensus       442 llw~dp~~~~~~~~~~rg~g-~~fg~~~~~--~fl~~-----------------------------~~~~~iir~H~~~~  489 (556)
                      +.|+.|.   .|.+.-.|.. ..|.-.++.  +||..                             ..-..||-||....
T Consensus       155 my~~~p~---~W~~~l~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l  231 (275)
T PRK00166        155 MYGNEPD---RWSPDLTGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPGRKTRDYTIVFGHWAAL  231 (275)
T ss_pred             hcCCCcC---ccCcccCchHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcCccCCCCeEEEecCccc
Confidence            5565563   1222222221 111111100  01111                             11247999999987


Q ss_pred             cCceEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 008730          490 EGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE  523 (556)
Q Consensus       490 ~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~  523 (556)
                      .|...  ...++.+-|.--+    +++=..+.++
T Consensus       232 ~G~~~--~~~~~~LDtGcvw----gg~Lta~~l~  259 (275)
T PRK00166        232 EGLTT--PPNIIALDTGCVW----GGKLTALRLE  259 (275)
T ss_pred             CCccC--CCCeEEeeccccc----CCeEEEEEeC
Confidence            78865  4568888877643    4455567783

>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain

Probab=99.90  E-value=4.7e-24  Score=206.60  Aligned_cols=147  Identities=18%  Similarity=0.277  Sum_probs=108.8

Q ss_pred             ceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCch
Q 008730          295 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE  374 (556)
Q Consensus       295 i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~  374 (556)
                      ++||||||||++.|+++|+++++.+..+++||+||||||||+|.||+.+|+.++    +++++|+||||.+.+...+|+.
T Consensus         1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~   76 (257)
T cd07422           1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK   76 (257)
T ss_pred             CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence            589999999999999999999987777889999999999999999999999986    5899999999999887766643


Q ss_pred             hh----HHhh-hhHHHHHHHHHHhcccccccccCC-eEEEEecccccCCCCChhhhhhcccC-----CCCCCccchhhhh
Q 008730          375 GE----VRSK-LSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRF-----CEPPEEGLMCELL  443 (556)
Q Consensus       375 ~~----~~~~-~~~~~~~~~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~-----~~~~~~~~~~~ll  443 (556)
                      ..    .... ......+.+.+|++++|+...+++ ++++||||| +|.. ++.+.....+.     ..+....++..+.
T Consensus        77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi-~p~w-~~~~~~~~a~eve~~l~~~~~~~~~~~my  154 (257)
T cd07422          77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGI-PPQW-SIEQALKLAREVEAALRGPNYREFLKNMY  154 (257)
T ss_pred             ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHhh
Confidence            11    1111 112233567899999999998764 799999999 5654 44443333222     1122233445555


Q ss_pred             cCCC
Q 008730          444 WSDP  447 (556)
Q Consensus       444 w~dp  447 (556)
                      |+.|
T Consensus       155 ~~~p  158 (257)
T cd07422         155 GNEP  158 (257)
T ss_pred             CCCC
Confidence            5555

ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa

>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain

Probab=99.90  E-value=5.3e-23  Score=199.27  Aligned_cols=119  Identities=34%  Similarity=0.524  Sum_probs=95.9

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCC---------CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSE---------ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE  363 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~---------~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE  363 (556)
                      +||.||||||||+..|.++|+++++.+.         .+++|||||||||||+|.||+++|+.++.  +.++++||||||
T Consensus         1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~--~~~~~~v~GNHE   78 (234)
T cd07423           1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA--AGAALCVPGNHD   78 (234)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhh--CCcEEEEECCcH
Confidence            3699999999999999999999987632         46899999999999999999999999863  357999999999


Q ss_pred             ccccccccC--------chhhHHhhhh---HHHHHHHHHHhcccccccccC-CeEEEEecccc
Q 008730          364 SKSMNKIYG--------FEGEVRSKLS---ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLF  414 (556)
Q Consensus       364 ~~~~~~~~g--------~~~~~~~~~~---~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~  414 (556)
                      .++++...+        +. ++...+.   ..+.+.+.+||+.||+...++ ++++|||||++
T Consensus        79 ~~l~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~  140 (234)
T cd07423          79 NKLYRKLQGRNVKITHGLE-ETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIK  140 (234)
T ss_pred             HHHHHHhcCCCccccCccc-chHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCC
Confidence            988764322        22 2233332   456678889999999988765 47999999983

PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp

>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical)

Probab=99.90  E-value=1.1e-23  Score=203.65  Aligned_cols=127  Identities=22%  Similarity=0.334  Sum_probs=102.5

Q ss_pred             cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCc
Q 008730          294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  373 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~  373 (556)
                      +++||||||||++.|.++|+++++.+..++++|+||+|||||+|+||+.++..+.    +++++|+||||.+.+...+|+
T Consensus         2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~   77 (279)
T TIGR00668         2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI   77 (279)
T ss_pred             cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence            5899999999999999999999988778889999999999999999999998874    567899999999999887775


Q ss_pred             h-----hhHHhhhhHHHHHHHHHHhcccccccccC-CeEEEEecccccCCCCChhhhhh
Q 008730          374 E-----GEVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGVKLSDIKT  426 (556)
Q Consensus       374 ~-----~~~~~~~~~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~~~~~~~~~~i~~  426 (556)
                      .     +....-+.......+.+|++++|+..... .++++||||| +|.. ++++...
T Consensus        78 ~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi-~P~w-~l~~a~~  134 (279)
T TIGR00668        78 SRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGI-TPQW-DLQTAKE  134 (279)
T ss_pred             CccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCC-CCCC-cHHHHHH
Confidence            2     12222223345567889999999997653 4699999999 6654 4555443

Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.

>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional

Probab=99.89  E-value=5.1e-23  Score=196.97  Aligned_cols=124  Identities=22%  Similarity=0.296  Sum_probs=95.0

Q ss_pred             eeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccc
Q 008730          285 VDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       285 ~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      ..++....++++||||||||++.|+++|+.+++.+..+++|||||+|||||+|.|||++|...      +++.|+||||.
T Consensus         9 ~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~   82 (218)
T PRK11439          9 QRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQ   82 (218)
T ss_pred             ecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHH
Confidence            345554456899999999999999999999988766788999999999999999999999652      57789999999


Q ss_pred             cccccccCch--------hhHHhhhh---HHHHHHHHHHhccccccccc---CCeEEEEecccc
Q 008730          365 KSMNKIYGFE--------GEVRSKLS---ETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLF  414 (556)
Q Consensus       365 ~~~~~~~g~~--------~~~~~~~~---~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~  414 (556)
                      +++....+-.        .++.....   .+.+..+.+|++.||+...+   ++++++||||+|
T Consensus        83 ~~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p  146 (218)
T PRK11439         83 MALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP  146 (218)
T ss_pred             HHHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence            8886542211        11111111   23455667899999999765   357999999984

>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain

Probab=99.89  E-value=8.6e-23  Score=196.94  Aligned_cols=197  Identities=20%  Similarity=0.197  Sum_probs=129.0

Q ss_pred             cceEeccCCCCHHHHHHHHHhcCCC-----CCCCCeeeecccccCCCChHHHHHHHHhccccCCC-eEEEeccccccccc
Q 008730          294 HFTVCGDVHGQFYDLLNIFELNGLP-----SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS-AIYLSRGNHESKSM  367 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~~~l~~~~~~-----~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~-~v~~lrGNHE~~~~  367 (556)
                      ++++||||||+++.|.++|+.+...     ...+.+|||||||||||+|.+|+.+|+.++..+|. ++++|+||||.+++
T Consensus         3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l   82 (304)
T cd07421           3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA   82 (304)
T ss_pred             eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence            5999999999999999999876422     23456999999999999999999999999988875 68899999997765


Q ss_pred             ccccC---------c------------------------------------------------------hhhHHhhhh--
Q 008730          368 NKIYG---------F------------------------------------------------------EGEVRSKLS--  382 (556)
Q Consensus       368 ~~~~g---------~------------------------------------------------------~~~~~~~~~--  382 (556)
                      .....         |                                                      ..+....|+  
T Consensus        83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~  162 (304)
T cd07421          83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP  162 (304)
T ss_pred             hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence            43311         0                                                      112233342  


Q ss_pred             -------HHHHHHHHHHhcccccccccCCeE-------------EEEecccccCCCCChhhhhhcc-cCCCCCCccchhh
Q 008730          383 -------ETFVELFAEVFCCLPLAHVLNQKV-------------FVVHGGLFSVDGVKLSDIKTID-RFCEPPEEGLMCE  441 (556)
Q Consensus       383 -------~~~~~~~~~~~~~lP~~~~i~~~~-------------~~vHgGi~~~~~~~~~~i~~~~-r~~~~~~~~~~~~  441 (556)
                             ..+.....+|++.||+....+ ++             +|||||+ .|...--++.+.+. +....+    -.+
T Consensus       163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~-~~~~~~~~g~~~~~lifVHAGl-rPg~pLe~Q~~~L~~~d~~~p----~~~  236 (304)
T cd07421         163 HGSSDLIKAVPEEHKKFLRNLVWVHEED-DVCIETEEGLKHCKLIAVHAGL-EKSNSVEEQLKLLRTKDTSIP----KIA  236 (304)
T ss_pred             cchHHHHHhCCHHHHHHHHhCCceEEeC-cccccccccccccceEEEEccc-CCCCChHHhhhhhhccccccc----ccc
Confidence                   234556779999999998755 45             8999999 77654333333321 111111    227


Q ss_pred             hhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 008730          442 LLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR  521 (556)
Q Consensus       442 llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~  521 (556)
                      +||.+...    ...++.    +         .. .=.+||-||+.     +....+.-|.|-+.--|   .+.--|+++
T Consensus       237 ~l~~R~~f----~~~~~~----~---------~~-~~~~VVhGHt~-----~~~~~~~Ri~iDtGa~~---~~~l~aa~v  290 (304)
T cd07421         237 PLSGRKNV----WNIPQE----L---------AD-KKTIVVSGHHG-----KLHIDGLRLIIDEGGGF---DDRPIAAIV  290 (304)
T ss_pred             ccccchhh----hcCccc----c---------cC-CCeEEEECCCC-----CceecCCEEEEECCCCc---CCceeEEEE
Confidence            77776421    011110    0         00 11589999992     34555566677666654   244466666


Q ss_pred             E
Q 008730          522 F  522 (556)
Q Consensus       522 ~  522 (556)
                      |
T Consensus       291 l  291 (304)
T cd07421         291 L  291 (304)
T ss_pred             e
Confidence            6

Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol

>PHA02239 putative protein phosphatase

Probab=99.88  E-value=2e-22  Score=193.51  Aligned_cols=173  Identities=23%  Similarity=0.255  Sum_probs=119.0

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCC-CCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY  371 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~-~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~  371 (556)
                      +++++||||||+++.|.++++.+.... ..+.+||+|||||||++|.+|+..++.+.. .+.++++|+||||.+++....
T Consensus         1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~   79 (235)
T PHA02239          1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIME   79 (235)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHh
Confidence            368999999999999999999875432 246799999999999999999999998753 456889999999998765331


Q ss_pred             Cc--------------hhhHHhhhh-------------------------------HHHHHHHHHHhcccccccccCCeE
Q 008730          372 GF--------------EGEVRSKLS-------------------------------ETFVELFAEVFCCLPLAHVLNQKV  406 (556)
Q Consensus       372 g~--------------~~~~~~~~~-------------------------------~~~~~~~~~~~~~lP~~~~i~~~~  406 (556)
                      +.              ..+....|+                               ...+..+..|++.||+....+ ++
T Consensus        80 ~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~  158 (235)
T PHA02239         80 NVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KY  158 (235)
T ss_pred             CchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CE
Confidence            10              112223331                               012244566999999998865 79


Q ss_pred             EEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecc
Q 008730          407 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHE  486 (556)
Q Consensus       407 ~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~  486 (556)
                      +|||||+ .|..              +..++...+++|.+. .    .+                   ...=+.||-||+
T Consensus       159 ifVHAGi-~p~~--------------~~~~q~~~~llWiR~-f----~~-------------------~~~g~~vV~GHT  199 (235)
T PHA02239        159 IFSHSGG-VSWK--------------PVEEQTIDQLIWSRD-F----QP-------------------RKDGFTYVCGHT  199 (235)
T ss_pred             EEEeCCC-CCCC--------------ChhhCCHhHeEEecc-c----CC-------------------CCCCcEEEECCC
Confidence            9999999 4431              122334668999984 1    10                   011247999999


Q ss_pred             ccccCceEecCCeEEEEecCC
Q 008730          487 VKDEGYEIEHDGKLITVFSAP  507 (556)
Q Consensus       487 ~~~~G~~~~~~~~~itvfSa~  507 (556)
                      ++.++..... ++.|.|-+.-
T Consensus       200 p~~~~~~~~~-~~~I~IDtGa  219 (235)
T PHA02239        200 PTDSGEVEIN-GDMLMCDVGA  219 (235)
T ss_pred             CCCCCccccc-CCEEEeecCc
Confidence            9876553332 3356666644

>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain

Probab=99.88  E-value=5.7e-22  Score=188.56  Aligned_cols=169  Identities=24%  Similarity=0.260  Sum_probs=116.9

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      +||+|||||||++..|.++++..++.+..+.++|+|||||||+++.||+.+|..      .++++++||||.+.+....+
T Consensus         1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~   74 (207)
T cd07424           1 GRDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRA   74 (207)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhC
Confidence            469999999999999999999988765577899999999999999999999865      36889999999998876544


Q ss_pred             c--hhhHHhhh---------hHHHHHHHHHHhcccccccccC---CeEEEEecccccCCCCChhhhhhcccCCCCCCccc
Q 008730          373 F--EGEVRSKL---------SETFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL  438 (556)
Q Consensus       373 ~--~~~~~~~~---------~~~~~~~~~~~~~~lP~~~~i~---~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~  438 (556)
                      .  ..+.....         ...+.+.+.+||+.||+...++   .+++|||||+++.....+.     .+  ++..+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~-----~~--~~~~~~~  147 (207)
T cd07424          75 EPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGV-----GA--VTLRPED  147 (207)
T ss_pred             CCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhh-----hc--cccCccc
Confidence            1  11111111         2235666888999999998764   4799999998432211110     00  1223344


Q ss_pred             hhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCc
Q 008730          439 MCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGY  492 (556)
Q Consensus       439 ~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~  492 (556)
                      ..+++|++|.......                  ...-+.+.||-||+..+..+
T Consensus       148 ~~~~~w~~~~~~~~~~------------------~~~~~~~~iV~GHTh~~~~~  183 (207)
T cd07424         148 IEELLWSRTRIQKAQT------------------QPIKGVDAVVHGHTPVKRPL  183 (207)
T ss_pred             ceeeeeccchhhhcCc------------------cccCCCCEEEECCCCCCcce
Confidence            5678998764322110                  00114467999999976543

PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all

>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional

Probab=99.85  E-value=8.5e-21  Score=181.25  Aligned_cols=125  Identities=23%  Similarity=0.273  Sum_probs=93.8

Q ss_pred             eeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccc
Q 008730          284 LVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE  363 (556)
Q Consensus       284 ~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE  363 (556)
                      +..++....+|++||||||||++.|+++++.+.+.+..+.+||+||+|||||+|.||+.+|..      .+++.||||||
T Consensus         6 ~~~~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE   79 (218)
T PRK09968          6 YQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHE   79 (218)
T ss_pred             eeeccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchH
Confidence            445555445689999999999999999999988766678899999999999999999998854      36788999999


Q ss_pred             ccccccccCc--------hhhHHhhhhH---HHHHHHHHHhccccccccc---CCeEEEEecccc
Q 008730          364 SKSMNKIYGF--------EGEVRSKLSE---TFVELFAEVFCCLPLAHVL---NQKVFVVHGGLF  414 (556)
Q Consensus       364 ~~~~~~~~g~--------~~~~~~~~~~---~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~  414 (556)
                      .+++.....-        ..++......   .....+..|++.||+...+   +.++++||||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p  144 (218)
T PRK09968         80 AMALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP  144 (218)
T ss_pred             HHHHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence            9887643210        0112222221   2334456799999999866   347899999983

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=2e-17  Score=157.66  Aligned_cols=168  Identities=33%  Similarity=0.522  Sum_probs=140.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ++...++.+...|+.+++.++|++|+..|.+||+++|.++..|.++|.+|.++|.|+.|+++|+.|+.+||.+.++|.++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            46677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccccccccccCCCCCccchh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVST  168 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~  168 (556)
                      |.+|..+|++++|++.|++||+++|++..++.+|..+...+++.+          .........+...+...        
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~----------~~~~~~~~~d~~~~ig~--------  217 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK----------SSAQASGSFDMAGLIGA--------  217 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC----------cccccccchhhhhhccC--------
Confidence            999999999999999999999999999999999999887776621          00111111111111111        


Q ss_pred             HHHHHHhhhhhhhH-hhhcccHHHHHHHHhHHH
Q 008730          169 QAAILAATATVVVA-VVVMVWPAVATTVAGMVV  200 (556)
Q Consensus       169 ~~~~~~~~~~~~~a-~~l~~~~~~~~~~~~l~~  200 (556)
                            .+....+. ..+|++|.++.+.+.|+.
T Consensus       218 ------~Pd~~s~~~~~l~nnp~l~~~~~~m~~  244 (304)
T KOG0553|consen  218 ------FPDSRSMFNGDLMNNPQLMQLASQMMK  244 (304)
T ss_pred             ------CccchhhhccccccCHHHHHHHHHHhh
Confidence                  02344555 489999999999998876

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.63  E-value=1.4e-14  Score=129.48  Aligned_cols=116  Identities=22%  Similarity=0.200  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   95 (556)
                      .+..+|..+...|++++|+.+|++++..+|.+..+|..+|.++..+|++++|+..|+++++++|+++.+++++|.++..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      |++++|+..|++++++.|+++..+..++.+...+..
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988776543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.57  E-value=8.4e-15  Score=150.24  Aligned_cols=127  Identities=22%  Similarity=0.306  Sum_probs=101.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      +..-+|.-+.+|.++|++|-..+.|++|+.+|.+|+.+.|+++.++-++|.+|+++|..+-|+..|+++++++|..+.+|
T Consensus       244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay  323 (966)
T KOG4626|consen  244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY  323 (966)
T ss_pred             hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence            34556777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      .++|.++...|+..+|..+|.+||.+.|.++++..+++.++...+++
T Consensus       324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~  370 (966)
T KOG4626|consen  324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI  370 (966)
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence            88888888888888888888888888888888888888777777764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.55  E-value=4.6e-14  Score=144.88  Aligned_cols=134  Identities=18%  Similarity=0.245  Sum_probs=114.8

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +-+|+-..++.++|+++-..|+..+|..+|++||.+.|+.+++.++||.+|.++|.+++|...|.++++..|....++.+
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN  393 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN  393 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence            45677788889999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh-----HHHHhcCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAVP  141 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-----~~~Ai~~~  141 (556)
                      ||.+|.++|++++|+.+|+.|+++.|...+++.+++..+..+|+..     +..||...
T Consensus       394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999988888888888888888753     44555443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.51  E-value=8.1e-13  Score=116.48  Aligned_cols=108  Identities=17%  Similarity=0.224  Sum_probs=102.9

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      ++..+..+.+|..++..|++++|...|+-...++|.+...|++||.|+..+|+|++|+..|.+|+.++|+++.+++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      |+...|+.+.|++.|+.|+....+.+.-
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~~  139 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEVSEH  139 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence            9999999999999999999998554443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=3.1e-14  Score=148.28  Aligned_cols=134  Identities=24%  Similarity=0.329  Sum_probs=128.5

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      .+.+|..++.|+.+|++|.-+++++.|+++|++|+.+||..+.+|..+|.-+....+|+.|..+|++|+..+|++..|||
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY  493 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY  493 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|.+|.++++++.|.-+|++|++++|.+....-.++..+.++++  .++|+.+++
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~AL~~~~  547 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDKALQLYE  547 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhHHHHHHH
Confidence            999999999999999999999999999999999999999999998  678877776

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=1.9e-12  Score=114.28  Aligned_cols=121  Identities=23%  Similarity=0.403  Sum_probs=112.5

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ...+|..+.....+|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..++
T Consensus        10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   89 (135)
T TIGR02552        10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF   89 (135)
T ss_pred             HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      .+|.++...|++++|+..|+++++++|++.........+..
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        90 HAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            99999999999999999999999999999886665555543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.47  E-value=1.1e-12  Score=134.95  Aligned_cols=117  Identities=37%  Similarity=0.661  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      ..+...|..++..|+|++|+..|+++++++|+++.+|.++|.+|..+|++++|+.+++++++++|+++.+|+++|.++..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +|++++|+..|+++++++|+++.+...++.|...+..
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999877754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=4.6e-12  Score=129.28  Aligned_cols=120  Identities=38%  Similarity=0.641  Sum_probs=114.8

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|..+......|+.+++.|+|.+|+..|.+|+..+|+++.+|.|+|.||.+++.+..|+.+++++++++|++..+|++.|
T Consensus       354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg  433 (539)
T KOG0548|consen  354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG  433 (539)
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            45567778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      .++..+.+|++|.+.|+++++++|++.++...+.+|...+
T Consensus       434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=5.5e-12  Score=126.88  Aligned_cols=108  Identities=24%  Similarity=0.262  Sum_probs=104.2

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .+..+..++.+|..+...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+++++|
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34558889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                      .++...|++++|++.|+++++++|+++.
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999984

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.41  E-value=3.4e-12  Score=141.70  Aligned_cols=131  Identities=22%  Similarity=0.237  Sum_probs=125.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|..+.++..+|..++..|++++|+..|+++++++|.+..+|..+|.++..+|++++|+..|+++++.+|+++.+++.+|
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            57778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++..+|++++|+.+|+++++++|++..++..++.++..+|+  +++|+..+.
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~  457 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFR  457 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999998887  678877766

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=5.8e-12  Score=118.63  Aligned_cols=110  Identities=18%  Similarity=0.222  Sum_probs=79.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhC--HHHHHHHHHHHHHhCCCChHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEE--YGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~-~~~g~--~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .+|++++.|..+|..+...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|.+.++++++.+|+++.++
T Consensus        68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al  147 (198)
T PRK10370         68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL  147 (198)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence            45666777777777777777777777777777777777777777777764 55565  4777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      +.+|.++...|++++|+..|++++++.|.+..-
T Consensus       148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            777777777777777777777777777665443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=7e-12  Score=115.53  Aligned_cols=129  Identities=22%  Similarity=0.206  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..+.+...+|..|+..|++..|...+++||+.+|++..+|..+|..|.+.|+.+.|.+.|++|++++|++.+++.|.|..
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKL--SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.+|++++|...|++|+..  .|.....+.+++.|..+.|+  ++.|-+.+.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~  163 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLK  163 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHH
Confidence            99999999999999999985  35567889999999888777  344444433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.39  E-value=4.2e-12  Score=140.99  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=125.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|++++.++|++..+++++
T Consensus       360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l  439 (615)
T TIGR00990       360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL  439 (615)
T ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence            45777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++..+|++++|+..|+++++..|+++.++..++.++...|+  +++|++.+.
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~  491 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK--FDEAIEKFD  491 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC--HHHHHHHHH
Confidence            9999999999999999999999999999999999999998887  677777665

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.7e-12  Score=129.77  Aligned_cols=129  Identities=26%  Similarity=0.339  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      -.++.++-.|+.|.-.++.++|+.+|++|++++|....+|..+|.-|.++++-..|++.|++|++++|.+..+||.+|++
T Consensus       328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa  407 (559)
T KOG1155|consen  328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA  407 (559)
T ss_pred             CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence            34556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.-++-..=|+-+|++|.++.|.++..|..+|.||.++++  .++|+..+.
T Consensus       408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCyk  456 (559)
T KOG1155|consen  408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYK  456 (559)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence            9999999999999999999999999999999999999998  688888876

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=7e-12  Score=125.49  Aligned_cols=133  Identities=18%  Similarity=0.228  Sum_probs=125.6

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      .-+|....+|..+|-.|...++...|++.|++|++++|.+..+|+.+|++|.-++.+.-|+-+|++|+++.|.++..|..
T Consensus       358 kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a  437 (559)
T KOG1155|consen  358 KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA  437 (559)
T ss_pred             hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH
Confidence            34677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|.||.++++.++|+++|.+|+.....+..++..+|+++..++.  .++|...++
T Consensus       438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d--~~eAa~~ye  490 (559)
T KOG1155|consen  438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD--LNEAAQYYE  490 (559)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence            99999999999999999999999999999999999999999988  567766655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=7.8e-12  Score=130.57  Aligned_cols=130  Identities=22%  Similarity=0.332  Sum_probs=113.1

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      -+|.+..+|+-+|.+|+++++++.|+-.|++|++++|.+......+|..+.++|+.++|++.|++|+.+||.++...|..
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            46778888999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~  140 (556)
                      |.+++.++++++|+..+++.-++.|++..++..+++++.++|+.  ..|+..
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~--~~Al~~  613 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT--DLALLH  613 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc--hHHHHh
Confidence            99999999999999999999999999999999999998888873  444433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.34  E-value=8.1e-12  Score=111.55  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        34 l~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      ...|+++++++|++   +..+|.++.+.|++++|+..|++++.++|.+..+++.+|.++..+|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46799999999985   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          114 NDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++.++..++.++..+|+  +++|++.+.
T Consensus        90 ~~~~a~~~lg~~l~~~g~--~~eAi~~~~  116 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGE--PGLAREAFQ  116 (144)
T ss_pred             CCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999988  688877776

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=1.1e-11  Score=116.75  Aligned_cols=114  Identities=13%  Similarity=0.113  Sum_probs=107.0

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCC--HHHHHH
Q 008730           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-LAMGK--FKEALK  103 (556)
Q Consensus        27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~g~--~~~A~~  103 (556)
                      .++.++++..++++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567799999999999999999999999999999999999999999999999999999999999985 67787  599999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       104 ~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++++++.+|++..++..++..+...|+  +++|+...+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~  168 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQ  168 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999999999999999998888  788888776

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.33  E-value=8.9e-11  Score=113.51  Aligned_cols=262  Identities=17%  Similarity=0.170  Sum_probs=171.7

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ..+|..++..+.+|..++..|++.+|+..|..|++.+|++..+++.+|.+|..+|+-..|+..+.+++++.|+...+...
T Consensus        32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccccccccccCCCCCc
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSS  164 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~l~~~p~~~  164 (556)
                      +|.++.++|++++|...|+..+..+|++   .+++..++.+......  ..+.+.......-...-.+....+++.||+.
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l--~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda  189 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL--VQQLKSASGSGDCQNAIEMITHLLEIQPWDA  189 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH--HHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence            9999999999999999999999999965   4455555544433222  2233333322222222333345678889987


Q ss_pred             cchhHHHHHH--------hhhhhhhHhhhcccHHHHH-HHHhHHHHHHHH-HhhhcccCCCCCCccccccccccccCCCC
Q 008730          165 FVSTQAAILA--------ATATVVVAVVVMVWPAVAT-TVAGMVVAVLMI-LGAYWWGSCSGSDVFTKSRKLELEVEPQY  234 (556)
Q Consensus       165 ~~~~~~~~~~--------~~~~~~~a~~l~~~~~~~~-~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (556)
                      .-....+.++        +..-+..++.+.+|.+.-- -++.+.-.+... ...-....|..           ++..-+.
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-----------ldpdHK~  258 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-----------LDPDHKL  258 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----------cCcchhh
Confidence            6433222222        2233445555555543322 233333333221 11222233431           1111111


Q ss_pred             CCcccCCCCCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHhhCCCeeeecC
Q 008730          235 SGARIEGDVITLDFVKKMMDDFKNQK-CLHKRYAFQIVLQTREMLRALPSLVDIDI  289 (556)
Q Consensus       235 ~g~~l~~~~it~~~i~~~i~~~~~~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~  289 (556)
                      |=|.       ...++++...+.+-+ .+........+++..++++.+|....|..
T Consensus       259 Cf~~-------YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~  307 (504)
T KOG0624|consen  259 CFPF-------YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY  307 (504)
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee
Confidence            1111       223444444443322 34455566788888999999998665543

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=2.7e-11  Score=132.48  Aligned_cols=131  Identities=13%  Similarity=0.029  Sum_probs=94.7

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+|+.+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+++.+
T Consensus       333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~  412 (553)
T PRK12370        333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK  412 (553)
T ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      +.+++..|++++|+..++++++.. |+++.++..++.++..+|+  +++|.+..
T Consensus       413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~--~~eA~~~~  464 (553)
T PRK12370        413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK--HELARKLT  464 (553)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence            666667777777777777777664 6667777777777776666  45555544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4.4e-11  Score=119.19  Aligned_cols=122  Identities=30%  Similarity=0.470  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------------NAVYYANRAFAHTKLEEYGSAIQDASKAI   75 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al   75 (556)
                      ...+......|+.+++.|+|..|...|++|+..-..               -..++.|++.|+.++++|.+|+..++++|
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345667788999999999999999999999986332               13568999999999999999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      .++|+|..++|+.|.++..+|+|+.|+..|++|++++|+|..+...+..+..+..+.
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888776654

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=2.8e-11  Score=132.32  Aligned_cols=133  Identities=20%  Similarity=0.141  Sum_probs=117.9

Q ss_pred             CCChhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 008730            8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID   78 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~---------g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   78 (556)
                      +.+|+.+.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++
T Consensus       289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  368 (553)
T PRK12370        289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS  368 (553)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            45677888888888877643         458999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |+++.+++.+|.++..+|++++|+..++++++++|.++.+...++.++...++  +++|+....
T Consensus       369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~  430 (553)
T PRK12370        369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGD  430 (553)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHH
Confidence            99999999999999999999999999999999999998877666666666665  677877654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=1.5e-11  Score=126.60  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=116.8

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH------------------------------------
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY------------------------------------   50 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a------------------------------------   50 (556)
                      ..++|.++++|..+|.+....++-..|+..++++++++|++.++                                    
T Consensus       312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~  391 (579)
T KOG1125|consen  312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVS  391 (579)
T ss_pred             HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccc
Confidence            35678888888888888888888888888888888887775433                                    


Q ss_pred             -----------------------------------------HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           51 -----------------------------------------YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        51 -----------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                                                               ...||..|.-.|+|++|+++|+.||+.+|++...|.+||
T Consensus       392 a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG  471 (579)
T KOG1125|consen  392 AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG  471 (579)
T ss_pred             cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence                                                     566888888889999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..+....+.++|+..|++|+++.|....+++++|.++..+|.  |++|+.++-
T Consensus       472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~--ykEA~~hlL  522 (579)
T KOG1125|consen  472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA--YKEAVKHLL  522 (579)
T ss_pred             HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh--HHHHHHHHH
Confidence            999999999999999999999999999999999999988887  677777654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.29  E-value=1e-10  Score=111.88  Aligned_cols=134  Identities=17%  Similarity=0.215  Sum_probs=120.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      .......+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..+++
T Consensus        24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  103 (234)
T TIGR02521        24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN  103 (234)
T ss_pred             cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            34445568899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++|.++...|++++|+..+++++...  |.....+..++.++...++  +++|...+.
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  159 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLT  159 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999864  4566788888988888777  566666655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.29  E-value=6.1e-11  Score=135.54  Aligned_cols=127  Identities=14%  Similarity=0.190  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      ....+..++......|++++|+..|+++++.+|+ +.++.++|.++.++|++++|+..|+++++++|+++.++.++|.++
T Consensus       575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL  653 (987)
T PRK09782        575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL  653 (987)
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3344445555556669999999999999999996 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ...|++++|+..|+++++++|+++.++..++.++..+|+  +++|+..++
T Consensus       654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~  701 (987)
T PRK09782        654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYAR  701 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999888  677766665

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.27  E-value=5.3e-11  Score=109.77  Aligned_cols=134  Identities=16%  Similarity=0.079  Sum_probs=121.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKG   84 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~   84 (556)
                      .+.+|+...+|..++..|.+.|+.+.|-+.|++|+.++|++.++++|.|.-++.+|+|++|.+.|++|+..  -|.-..+
T Consensus        62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t  141 (250)
T COG3063          62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT  141 (250)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999964  3445789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +-|+|.|-.+.|+.+.|.++|+++++++|+++.+...++..+...++  +..|....+
T Consensus       142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~--y~~Ar~~~~  197 (250)
T COG3063         142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD--YAPARLYLE  197 (250)
T ss_pred             hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc--chHHHHHHH
Confidence            99999999999999999999999999999999999999988877766  555544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.26  E-value=4.8e-11  Score=131.48  Aligned_cols=130  Identities=6%  Similarity=-0.019  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      +..+.++..+|.+....|.+++|+..++.++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            55688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.++|++++|+..|++++..+|+++.++..++.++...|+  .++|...++
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~  212 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQ  212 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999998  455555544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.25  E-value=1.9e-10  Score=108.32  Aligned_cols=132  Identities=18%  Similarity=0.187  Sum_probs=120.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..+.....+..+|...+..|+|.+|+..++++..++|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..|+
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl  174 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL  174 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence            34555556667999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~  140 (556)
                      |..|.-.|+++.|...+.++....+.+..+..+++.+....++..+.+.+..
T Consensus       175 gms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            9999999999999999999999999999999999999999988555554443

>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11

Probab=99.25  E-value=1.9e-11  Score=111.86  Aligned_cols=159  Identities=21%  Similarity=0.213  Sum_probs=100.1

Q ss_pred             cceEeccCCCCHHHH---HHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHH--HhccccCCCeEEEecccccccccc
Q 008730          294 HFTVCGDVHGQFYDL---LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL--FAFKCMCPSAIYLSRGNHESKSMN  368 (556)
Q Consensus       294 ~i~vigDiHG~~~~l---~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l--~~lk~~~p~~v~~lrGNHE~~~~~  368 (556)
                      ||++|||+||.....   .+.+.........+.+|++||++|+|..+.+.....  .......+..+++++||||.....
T Consensus         2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~   81 (200)
T PF00149_consen    2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN   81 (200)
T ss_dssp             EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred             eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence            689999999999988   343333333344567999999999999988877754  444455678999999999987764


Q ss_pred             cccCchhhHH----------------------------------hhhhHHHHHHHHHHhcccccccccCCeEEEEecccc
Q 008730          369 KIYGFEGEVR----------------------------------SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLF  414 (556)
Q Consensus       369 ~~~g~~~~~~----------------------------------~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~  414 (556)
                      ..+.......                                  .............+.............|+++|.++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~-  160 (200)
T PF00149_consen   82 SFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPP-  160 (200)
T ss_dssp             HHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSS-
T ss_pred             cccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEEEecCC-
Confidence            3321111110                                  00111222222333333333334456899999988 


Q ss_pred             cCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecccc
Q 008730          415 SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVK  488 (556)
Q Consensus       415 ~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~  488 (556)
                      .+....-...                                   .....+.+.+..++++.++++++.||+-.
T Consensus       161 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~  199 (200)
T PF00149_consen  161 YSSSSDSSSY-----------------------------------GNESKGREALEELLKKYNVDLVLSGHTHR  199 (200)
T ss_dssp             STTSSSTHHH-----------------------------------SSEEEHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred             CCcccccccc-----------------------------------chhhccHHHHHHHHhhCCCCEEEeCceec
Confidence            3221110000                                   12356788999999999999999999853

The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.24  E-value=2.6e-10  Score=109.07  Aligned_cols=132  Identities=22%  Similarity=0.233  Sum_probs=120.9

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCChHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYY   86 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~   86 (556)
                      ..|..+..+..+|..+...|++++|+..|+++++..|.+..++.++|.++...|++++|+..+++++...  +.....++
T Consensus        60 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  139 (234)
T TIGR02521        60 HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE  139 (234)
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence            3566788999999999999999999999999999999999999999999999999999999999999854  55678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|.++...|++++|...++++++..|++..++..++.++...++  +++|+....
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  193 (234)
T TIGR02521       140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLE  193 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999999988877  677776655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.24  E-value=2.3e-10  Score=98.07  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR   87 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~   87 (556)
                      ++.++.+|..+...|++++|+..|++++..+|++   ..+++.+|.++.+.|++++|+..|++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      +|.++..+|++++|+..++++++..|++..+...
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999999999999999999999999998876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.24  E-value=1.4e-10  Score=129.04  Aligned_cols=125  Identities=14%  Similarity=0.083  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH----HHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS----AIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~----A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ....++..+...|++++|+..|+++++.+|+++.++.++|.++...|++++    |+..|+++++++|+++.++..+|.+
T Consensus       214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~  293 (656)
T PRK15174        214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA  293 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            345567888899999999999999999999999999999999999999886    7999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +...|++++|+..++++++++|+++.++..++.++...|+  +++|+..+.
T Consensus       294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~  342 (656)
T PRK15174        294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFV  342 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            9999999999999999999999999999999999888887  677776665

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.5e-10  Score=104.08  Aligned_cols=116  Identities=36%  Similarity=0.599  Sum_probs=106.8

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      ...+..+...|+.++..|+|++|...|..||++.|..     +.+|.++|.|+++++.++.|+..+.+|++++|.+..++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            4557788899999999999999999999999999986     45788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      .++|.+|.++..+++|+..|++.++.+|....+....+++-
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            99999999999999999999999999999888776666543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.22  E-value=2.1e-10  Score=131.28  Aligned_cols=128  Identities=15%  Similarity=0.034  Sum_probs=118.7

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|+ +..+..+|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|
T Consensus       606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA  684 (987)
T PRK09782        606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA  684 (987)
T ss_pred             CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            454 7889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~  140 (556)
                      .++..+|++++|+..|+++++++|++..+....+.+.....+  ++.+.+.
T Consensus       685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~--~~~a~~~  733 (987)
T PRK09782        685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN--FRRLHEE  733 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH--HHHHHHH
Confidence            999999999999999999999999999999988888776665  4555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=1.8e-10  Score=116.11  Aligned_cols=126  Identities=24%  Similarity=0.308  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      ..|..+|..|....+-++-...|++|.+++|++++.|+.+|+.++-+++|++|+..|++++.++|.+..++.+++.++++
T Consensus       361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR  440 (606)
T ss_pred             hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence            33667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++++++...|+.+.+..|+.++++...++++...++  |++|++.+.
T Consensus       441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq--Fd~A~k~YD  486 (606)
T KOG0547|consen  441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ--FDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh--HHHHHHHHH
Confidence            7777777777777777777777777777777665555  556655554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.21  E-value=7.1e-11  Score=118.02  Aligned_cols=132  Identities=22%  Similarity=0.300  Sum_probs=106.3

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .+..+..|..+|..+.+.|+.++|+..|+++++.+|+++.++..++.++...|+++++.+.++...+..|+++..+..+|
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la  221 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA  221 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999998888888999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      .++..+|++++|+.+|+++++..|+++.++..++.++...|+  .++|..+...
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--~~~A~~~~~~  273 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR--KDEALRLRRQ  273 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             HHhccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            999999999999999999999999999999999999999998  6788776653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=6e-11  Score=122.22  Aligned_cols=121  Identities=15%  Similarity=0.276  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..++....+|..|+..|+|++|+.+|+.||..+|++...|+.||.++....+.++|+.+|++|+++.|.++.++|++|.+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHhhh
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPND----------PDAAQKVKECEKAVKKL  132 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~----------~~~~~~l~~~~~~~~~~  132 (556)
                      ++.+|.|++|.++|-.||.+.+..          ..+|..|..+...+++.
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~  558 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS  558 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence            999999999999999999997651          24677777777766663

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.20  E-value=4.9e-10  Score=103.38  Aligned_cols=112  Identities=21%  Similarity=0.297  Sum_probs=101.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730            4 METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (556)
Q Consensus         4 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   80 (556)
                      +.+.+.++..+..++.+|..+...|++++|+.+|+++++..|+.   +.++.++|.++.++|++++|+..++++++.+|+
T Consensus        25 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         25 ILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             HcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            34556678889999999999999999999999999999987764   578999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008730           81 YPKGYYRRGAAYLAMGK--------------FKEALKDFQQVKKLSPND  115 (556)
Q Consensus        81 ~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~  115 (556)
                      +..++..+|.++...|+              +++|++.+++++..+|++
T Consensus       105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999999888              577888888888888876

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.20  E-value=4.2e-10  Score=109.34  Aligned_cols=112  Identities=28%  Similarity=0.362  Sum_probs=102.9

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH--
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK--   83 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--   83 (556)
                      .++..+..++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++.+.|++++|+..|+++++.+|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4466788999999999999999999999999999999876   68899999999999999999999999999998876  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730           84 -GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPNDPDAAQ  120 (556)
Q Consensus        84 -~~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~  120 (556)
                       +++.+|.++...        |++++|++.|+++++..|++..+..
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  153 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD  153 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence             799999999987        8899999999999999999876643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.18  E-value=3.6e-10  Score=125.88  Aligned_cols=131  Identities=18%  Similarity=0.155  Sum_probs=101.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQ----AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~----Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .|+.+..+..+|..+...|++++    |+..|+++++++|+++.++..+|.++...|++++|+..++++++++|+++.++
T Consensus       242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~  321 (656)
T PRK15174        242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR  321 (656)
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45566777778888888888775    67888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..+|.++...|++++|+..|+++++.+|++..+...++.++...|+  +++|+..+.
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~--~deA~~~l~  376 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK--TSEAESVFE  376 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            8888888888888888888888888888777666666777766665  677766665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=4.5e-10  Score=90.55  Aligned_cols=99  Identities=39%  Similarity=0.664  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   95 (556)
                      .++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 008730           96 GKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~  114 (556)
                      |++++|...++++++..|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988874

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.16  E-value=1.8e-10  Score=101.50  Aligned_cols=106  Identities=18%  Similarity=0.253  Sum_probs=100.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        35 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      +.|+++++.+|++..+...+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          115 DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++..+..++.++...++  +++|+..+.
T Consensus        84 ~~~~~~~la~~~~~~g~--~~~A~~~~~  109 (135)
T TIGR02552        84 DPRPYFHAAECLLALGE--PESALKALD  109 (135)
T ss_pred             ChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999998887  677777665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.16  E-value=1.2e-09  Score=96.95  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=104.9

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      .-+++..+..+..|..++..|++++|...|+-....+|.+++.|..||.|+..+++|++|+..|..|..+++++|.+.+.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      .|.||..+|+.++|+.+|+.++. .|.+......-.
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~  145 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKAL  145 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHH
Confidence            99999999999999999999998 566555443333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.4e-10  Score=116.88  Aligned_cols=113  Identities=33%  Similarity=0.574  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      +..+...|+..+..|+|+.|+.+|.+|+.++|.+...|.++..+|..+|+|++|+.+..+.++++|+.+.+|.++|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      .+|+|++|+..|.+.|+.+|+|...+..++.++
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999988

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.15  E-value=1.9e-10  Score=88.81  Aligned_cols=66  Identities=36%  Similarity=0.617  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSP  113 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p  113 (556)
                      +..|..+|.++...|+|++|+..|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4444445555555555555555555555555555555555555555554 34555555555554444

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.14  E-value=1.8e-10  Score=88.92  Aligned_cols=67  Identities=39%  Similarity=0.584  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCC
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDP   79 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p   79 (556)
                      .+..|..+|..++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999998

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.14  E-value=2.8e-10  Score=110.01  Aligned_cols=114  Identities=36%  Similarity=0.492  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...+...|+.|+++|.|++|+.+|.+++..+|.++..+.++|.+|+++++|..|..+|+.|+.+|..+..+|.++|.+-.
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      .+|...+|.+.++.+|++.|++.+....++.+..
T Consensus       177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999998887766665543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=5e-10  Score=113.07  Aligned_cols=135  Identities=17%  Similarity=0.210  Sum_probs=118.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ..-+|..+..|+.+|+.++-.++|++|+..|+++++++|++..++..++.+.+++++++++...|+.+.+..|+.+++|.
T Consensus       387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~  466 (606)
T KOG0547|consen  387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN  466 (606)
T ss_pred             HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..|.++..+++++.|++.|.+|+++.|.      ++..+...+.+..+- ..++.+|+.+..
T Consensus       467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~  527 (606)
T KOG0547|consen  467 LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLR  527 (606)
T ss_pred             HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHH
Confidence            9999999999999999999999999998      555555555444332 233566666555

>PLN02789 farnesyltranstransferase

Probab=99.11  E-value=2.5e-09  Score=107.92  Aligned_cols=121  Identities=12%  Similarity=0.079  Sum_probs=108.1

Q ss_pred             CChhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHhCCCChHHH
Q 008730            9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY--GSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .+|....+|..++.++...| ++++|+..++++++.+|++..+|..++.++.++++.  ++++..++++++.+|++..+|
T Consensus        66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW  145 (320)
T PLN02789         66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW  145 (320)
T ss_pred             HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence            46778889999999999888 689999999999999999999999999888888874  778899999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      ..++.++..+|++++|++++.++++.+|.|..++..++.+...+
T Consensus       146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998887655

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=1.5e-09  Score=105.42  Aligned_cols=130  Identities=17%  Similarity=0.180  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh--------hCHHHHHHHHHHHHHhCC
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTKL--------EEYGSAIQDASKAIEIDP   79 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~---a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p   79 (556)
                      +....+++.+|..++..|++++|+..|+++++.+|+++.   +++.+|.++.+.        |++++|+..+++++..+|
T Consensus        67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            444578899999999999999999999999999998876   799999999887        899999999999999999


Q ss_pred             CChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhhhHHHHhc
Q 008730           80 RYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIA  139 (556)
Q Consensus        80 ~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~Ai~  139 (556)
                      ++..++                 +.+|.+|...|++++|+..|+++++..|+.   +.++..++.++..+|+  +++|+.
T Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~~  224 (235)
T TIGR03302       147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQD  224 (235)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHHH
Confidence            986542                 467889999999999999999999997764   5799999999999988  677766


Q ss_pred             CCC
Q 008730          140 VPE  142 (556)
Q Consensus       140 ~~~  142 (556)
                      ..+
T Consensus       225 ~~~  227 (235)
T TIGR03302       225 AAA  227 (235)
T ss_pred             HHH
Confidence            543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.2e-09  Score=108.25  Aligned_cols=130  Identities=28%  Similarity=0.510  Sum_probs=110.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .+.....+...|+..++.|.|.+|.++|..+|.++|++    +.+|.++|.+..++|+..+|+..++.|+.+||...+++
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence            35667788899999999999999999999999999986    56799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hhhHHHHhcC
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK---KLKFEEAIAV  140 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~---~~~~~~Ai~~  140 (556)
                      ...|.|+..+++|++|+++|++|++...+ ......+.++...++   +.++-+-+-.
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi  381 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGI  381 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhh
Confidence            99999999999999999999999999866 444444444444443   4444443333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.09  E-value=1.3e-09  Score=109.57  Aligned_cols=115  Identities=18%  Similarity=0.128  Sum_probs=104.8

Q ss_pred             HccCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730           26 RAKKYSQAIDLYSQAIEL---NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~---~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A  101 (556)
                      ..++.+.++..+.+++..   +|. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            346778899999999964   333 3788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       102 ~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +..|+++++++|++..++.+++.++...++  +++|++.++
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~  156 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLL  156 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            999999999999999999999999988887  788877776

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.07  E-value=2e-09  Score=95.04  Aligned_cols=100  Identities=17%  Similarity=0.179  Sum_probs=91.2

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           40 AIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        40 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      ...++ ++.-+..+.+|..++..|++++|...|+.++.+||.+...|++||.++..+|++++|+..|.+|+.++|+++.+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34556 77788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHhcCC
Q 008730          119 AQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      +.+++.|+..+|+.  +.|.+.+
T Consensus       106 ~~~ag~c~L~lG~~--~~A~~aF  126 (157)
T PRK15363        106 PWAAAECYLACDNV--CYAIKAL  126 (157)
T ss_pred             HHHHHHHHHHcCCH--HHHHHHH
Confidence            99999999999984  4444443

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain

Probab=99.07  E-value=2.9e-09  Score=96.38  Aligned_cols=82  Identities=28%  Similarity=0.449  Sum_probs=61.8

Q ss_pred             cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCc
Q 008730          294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  373 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~  373 (556)
                      +|.++||+||+...+.++++....   .+.+|++||++++++...        ++  ....++.++||||....      
T Consensus         1 ~i~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~~------   61 (155)
T cd00841           1 KIGVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEVD------   61 (155)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcCC------
Confidence            488999999999999999997654   467999999999998765        11  23468999999997542      


Q ss_pred             hhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEeccc
Q 008730          374 EGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL  413 (556)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi  413 (556)
                                         +..+|....+   +.+++++||..
T Consensus        62 -------------------~~~~p~~~~~~~~g~~i~v~Hg~~   85 (155)
T cd00841          62 -------------------FPILPEEAVLEIGGKRIFLTHGHL   85 (155)
T ss_pred             -------------------cccCCceEEEEECCEEEEEECCcc
Confidence                               3445644433   34799999865

YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.07  E-value=2.4e-09  Score=121.68  Aligned_cols=130  Identities=15%  Similarity=0.205  Sum_probs=120.2

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      ++..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. ++.+|
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la  123 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA  123 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|++++|+..+++++++.|+++.++..++.++...+.  .++|++..+
T Consensus       124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~--~e~Al~~l~  174 (765)
T PRK10049        124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL--SAPALGAID  174 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHH
Confidence            999999999999999999999999999999999988876555  566666554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.06  E-value=4.8e-09  Score=109.77  Aligned_cols=121  Identities=21%  Similarity=0.286  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      +....++..++..+...|++++|++.++++++.+|.+.     ..+..+|.++.+.|++++|+..|+++++.+|++..++
T Consensus       138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  217 (389)
T PRK11788        138 DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS  217 (389)
T ss_pred             cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence            34455566666666666666666666666666655442     2344566666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhh
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKK  131 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~  131 (556)
                      +.+|.++...|++++|++.++++++.+|.+ ..++..++.++...++
T Consensus       218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence            666666666666666666666666665554 2344555555555544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=6e-09  Score=95.70  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=94.5

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      ......+..++.+|..+...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..|++++.++|.+..+
T Consensus        29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            3445568889999999999999999999999999997763   4689999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 008730           85 YYRRGAAYL-------AMGKFK-------EALKDFQQVKKLSPNDP  116 (556)
Q Consensus        85 ~~~lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~~  116 (556)
                      +.++|.++.       .+|+++       +|+..|++++..+|.+.
T Consensus       109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999999       777766       56666667777787654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=4.7e-09  Score=101.51  Aligned_cols=117  Identities=20%  Similarity=0.172  Sum_probs=106.0

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      ..+|++++.|..+|.+|+..|+++.|...|.+|+++.|++++.+..+|.+++.+.   .-.+|...+++++++||.++.+
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            4678999999999999999999999999999999999999999999999887654   3678999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  124 (556)
                      .+.+|..++..|+|.+|+..|+..++..|.+......+..
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            9999999999999999999999999999887665444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.03  E-value=4.8e-09  Score=124.55  Aligned_cols=122  Identities=20%  Similarity=0.213  Sum_probs=100.0

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH--------------H
Q 008730           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK--------------G   84 (556)
Q Consensus        19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--------------~   84 (556)
                      .+|..+...|++++|+..|+++++.+|+++.++..+|.++.++|++++|+..|+++++++|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            44788888899999999999999999999999999999999999999999999999988887642              2


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ...+|.++...|++++|+..|+++++++|++..++..++.++...++  +++|++.++
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~  409 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQ  409 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            23457788888888888888888888888888888888888887776  556655554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.03  E-value=6.4e-10  Score=89.54  Aligned_cols=82  Identities=29%  Similarity=0.489  Sum_probs=74.2

Q ss_pred             HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008730           26 RAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK  103 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~  103 (556)
                      ..|+|++|+..|+++++.+|.  +...++.+|.|+++.|+|++|+..+++ ...+|.++..++.+|.|+..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  567788899999999999999999999 88899889999999999999999999999


Q ss_pred             HHHHH
Q 008730          104 DFQQV  108 (556)
Q Consensus       104 ~~~~a  108 (556)
                      .|++|
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.03  E-value=6.8e-09  Score=123.24  Aligned_cols=124  Identities=18%  Similarity=0.169  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-----
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-----   91 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-----   91 (556)
                      ...+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++|++..++..++.+     
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            345577777777777777777777777777777777777777777777777777777777777776665544433     


Q ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhH
Q 008730           92 -------------------------------------YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKF  134 (556)
Q Consensus        92 -------------------------------------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~  134 (556)
                                                           +...|++++|++.|+++++++|+++.++..++.++...++  +
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~--~  511 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ--R  511 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--H
Confidence                                                 3346777777777777777777777777777777777666  4


Q ss_pred             HHHhcCCC
Q 008730          135 EEAIAVPE  142 (556)
Q Consensus       135 ~~Ai~~~~  142 (556)
                      ++|+..++
T Consensus       512 ~~A~~~l~  519 (1157)
T PRK11447        512 SQADALMR  519 (1157)
T ss_pred             HHHHHHHH
Confidence            55555444

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []

Probab=99.03  E-value=2.8e-09  Score=96.44  Aligned_cols=152  Identities=21%  Similarity=0.319  Sum_probs=93.0

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      +||+++||+|++...+.++++.+.   ..+.+|++||++|+    .+++..+...      .+++++||||.........
T Consensus         1 Mki~~~sD~H~~~~~~~~~~~~~~---~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~~~~~   67 (156)
T PF12850_consen    1 MKIAVISDLHGNLDALEAVLEYIN---EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFPNEND   67 (156)
T ss_dssp             EEEEEEE--TTTHHHHHHHHHHHT---TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHHSEEC
T ss_pred             CEEEEEeCCCCChhHHHHHHHHhc---CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccchhhhh
Confidence            479999999999999999999882   35679999999993    7777777554      6999999999655333221


Q ss_pred             chhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCC
Q 008730          373 FEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG  452 (556)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~  452 (556)
                      ..      +          +....... .-+.+++++||.. ..                                    
T Consensus        68 ~~------~----------~~~~~~~~-~~~~~i~~~H~~~-~~------------------------------------   93 (156)
T PF12850_consen   68 EE------Y----------LLDALRLT-IDGFKILLSHGHP-YD------------------------------------   93 (156)
T ss_dssp             TC------S----------SHSEEEEE-ETTEEEEEESSTS-SS------------------------------------
T ss_pred             cc------c----------cccceeee-ecCCeEEEECCCC-cc------------------------------------
Confidence            11      0          11222222 1256899999866 21                                    


Q ss_pred             CCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 008730          453 RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE  523 (556)
Q Consensus       453 ~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~  523 (556)
                               ...+.+.+.+.+...++++++-||.-...-++ ..+..+++.=|....-  .+...++++|+
T Consensus        94 ---------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-~~~~~~~~~Gs~~~~~--~~~~~~~~i~~  152 (156)
T PF12850_consen   94 ---------VQWDPAELREILSRENVDLVLHGHTHRPQVFK-IGGIHVINPGSIGGPR--HGDQSGYAILD  152 (156)
T ss_dssp             ---------STTTHHHHHHHHHHTTSSEEEESSSSSEEEEE-ETTEEEEEE-GSSS-S--SSSSEEEEEEE
T ss_pred             ---------cccChhhhhhhhcccCCCEEEcCCcccceEEE-ECCEEEEECCcCCCCC--CCCCCEEEEEE
Confidence                     11345567777889999999999998533332 2233444444433221  22366776663

; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....

>TIGR00040 yfcE phosphoesterase, MJ0936 family

Probab=99.01  E-value=8.5e-09  Score=93.70  Aligned_cols=64  Identities=23%  Similarity=0.285  Sum_probs=49.1

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      +++.||||+||++..+..+++.....+..+.++++||++     +.+++..+..+.    ..++.++||||..
T Consensus         1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~   64 (158)
T TIGR00040         1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE   64 (158)
T ss_pred             CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence            468999999999988777666555443456799999999     467777776553    2589999999983

Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.

>PLN02789 farnesyltranstransferase

Probab=99.01  E-value=5.3e-09  Score=105.52  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      +-.+++-.+-.++...+.+++|+..+.++++++|.+..+|..++.++..++ ++++|+..++++++.+|++..+|+.++.
T Consensus        35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~  114 (320)
T PLN02789         35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence            444555555556777889999999999999999999999999999999998 6899999999999999999999999999


Q ss_pred             HHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++..+++.  ++++.+++++++.+|+|..++...+.+...++.  ++++++...
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~  166 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCH  166 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHH
Confidence            99999874  789999999999999999999999999999987  777877765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.01  E-value=3.3e-09  Score=122.31  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   95 (556)
                      .+..++..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      |+ .+|+..+++++++.|+++..+..++.++...++
T Consensus       818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  852 (899)
T TIGR02917       818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE  852 (899)
T ss_pred             Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence            55 445555555555555555555555555444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=1.7e-09  Score=103.77  Aligned_cols=92  Identities=28%  Similarity=0.413  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      +-+-.-|.-+++.++|++|+..|.+||+++|.++..|.++|.+|.++|.++.|++.+++|+.++|....+|..++.++..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34666788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHhcCCC
Q 008730          129 VKKLKFEEAIAVPE  142 (556)
Q Consensus       129 ~~~~~~~~Ai~~~~  142 (556)
                      +|+  +++|++.++
T Consensus       162 ~gk--~~~A~~ayk  173 (304)
T KOG0553|consen  162 LGK--YEEAIEAYK  173 (304)
T ss_pred             cCc--HHHHHHHHH
Confidence            988  678877766

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=9.9e-09  Score=104.46  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      +....+++..+..++..|++++|+..++..++..|+|+..+...+.++.+.++.++|++.+++++.++|..+..++++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      +|.+.|++++|+..+++.+..+|+++..|..|++++..+|+.
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            999999999999999999999999999999999999999984

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.98  E-value=7.9e-09  Score=108.16  Aligned_cols=126  Identities=16%  Similarity=0.126  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-----HHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRG   89 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~~lg   89 (556)
                      ..+..+|..+...|++++|+..|+++++.+|.+..++..++.++.+.|++++|++.++++++.+|.+.     ..+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            44555566666666666666666666666666666666666666666666666666666666555432     2344556


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|++++|+..|+++++..|++..++..++.++...++  +++|++.+.
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~  238 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALE  238 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            666666666666666666666666666666666666555554  455544443

>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases

Probab=98.98  E-value=8.8e-10  Score=89.33  Aligned_cols=60  Identities=53%  Similarity=0.954  Sum_probs=43.7

Q ss_pred             cccCCCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeee
Q 008730          228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI  287 (556)
Q Consensus       228 ~~~~~~~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~  287 (556)
                      +.++.+|+||++++..+|.++++.|++.|++++.||++++..++.++.++|+++|++++|
T Consensus        36 i~Ve~sY~GP~l~~~~it~efv~~mie~FK~~K~Lhkkyv~~Il~~~~~llk~~PslVeI   95 (95)
T PF08321_consen   36 IDVEDSYDGPRLEDEPITLEFVKAMIEWFKNQKKLHKKYVYQILLEAKKLLKQLPSLVEI   95 (95)
T ss_dssp             T---SS--SS--BTTB--HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred             eecCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhCcCccCC
Confidence            568899999999966799999999999999999999999999999999999999999986

; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.98  E-value=1.6e-08  Score=109.32  Aligned_cols=126  Identities=13%  Similarity=0.150  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..++.+...|+.++..|++++|...+.++++.+|.++.+|+.||.+|.++|+.++|...+-.|-.++|++.+.|..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhc
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA  139 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~  139 (556)
                      ..++|.+++|+-+|.+|++.+|.+.+.....+.++.+.|..  ..|+.
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~--~~Am~  262 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL--KRAME  262 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH--HHHHH
Confidence            99999999999999999999999999999999999988874  44444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.97  E-value=9.9e-09  Score=96.86  Aligned_cols=129  Identities=18%  Similarity=0.249  Sum_probs=118.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|..... ..++..+...|+-+.++.+..++...+|.+......+|..+.+.|+|.+|+..++++..++|+++++|..+|
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            4555566 889999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      .+|.+.|+.++|...|.+++++.|.++.+..+++..+...|+  ++.|..+.
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd--~~~A~~ll  191 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD--LEDAETLL  191 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC--HHHHHHHH
Confidence            999999999999999999999999999999999999988887  45554444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.97  E-value=1.9e-08  Score=98.48  Aligned_cols=109  Identities=15%  Similarity=0.059  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHH
Q 008730           14 AEELKALANEA-FRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYY   86 (556)
Q Consensus        14 a~~~~~lg~~~-~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~   86 (556)
                      ....+..|..+ ++.|+|++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|++++...|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            47778888876 67899999999999999999998   579999999999999999999999999999887   488999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  122 (556)
                      .+|.++..+|++++|+..|+++++..|+...+....
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~  257 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ  257 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            999999999999999999999999999988655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.97  E-value=2.2e-09  Score=81.75  Aligned_cols=63  Identities=24%  Similarity=0.356  Sum_probs=33.5

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (556)
Q Consensus        19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   81 (556)
                      .+|..++..|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555555555555555555555555555555555555555555555555555555544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.97  E-value=1.2e-08  Score=117.51  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=118.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..+..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  199 (899)
T TIGR02917       120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK  199 (899)
T ss_pred             CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      |.++...|++++|+..|+++++.+|++..++..++.++...++  +++|....
T Consensus       200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~  250 (899)
T TIGR02917       200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHA  250 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence            9999999999999999999999999999999999888877776  45554433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.96  E-value=9.2e-09  Score=113.61  Aligned_cols=112  Identities=11%  Similarity=0.008  Sum_probs=106.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      .+..|+.+++...++.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|+|++|+..|++++..+|+++.++.
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      .+|.++...|+.++|...|++|++...+-...
T Consensus       193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            99999999999999999999999997655544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.95  E-value=2.5e-09  Score=81.40  Aligned_cols=65  Identities=28%  Similarity=0.501  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      +.+|..+++.|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999975

>PRK09453 phosphodiesterase; Provisional

Probab=98.93  E-value=2.5e-09  Score=99.60  Aligned_cols=69  Identities=23%  Similarity=0.271  Sum_probs=54.5

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCC--------hHHHHHHHHhccccCCCeEEEecccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF--------SVEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~--------s~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      +||.|+||+||++..+.++++.+... ..+.+|++||++|+|+.        ..+++..+..+.    ..+++++||||.
T Consensus         1 mri~viSD~Hg~~~~~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNhD~   75 (182)
T PRK09453          1 MKLMFASDTHGSLPATEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA----DKIIAVRGNCDS   75 (182)
T ss_pred             CeEEEEEeccCCHHHHHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC----CceEEEccCCcc
Confidence            46899999999999999988876433 34679999999999874        467777775542    468999999997


Q ss_pred             cc
Q 008730          365 KS  366 (556)
Q Consensus       365 ~~  366 (556)
                      ..
T Consensus        76 ~~   77 (182)
T PRK09453         76 EV   77 (182)
T ss_pred             hh
Confidence            53

>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]

Probab=98.91  E-value=1.8e-09  Score=96.70  Aligned_cols=142  Identities=38%  Similarity=0.495  Sum_probs=117.6

Q ss_pred             cccccCchhhHHhhhhHH-HHHH---HHHHhcccccccccCC-eEEEEecccccCCC-CChhhhhhcccCC--CCCCccc
Q 008730          367 MNKIYGFEGEVRSKLSET-FVEL---FAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDG-VKLSDIKTIDRFC--EPPEEGL  438 (556)
Q Consensus       367 ~~~~~g~~~~~~~~~~~~-~~~~---~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~-~~~~~i~~~~r~~--~~~~~~~  438 (556)
                      ++..+|+..++...++.. .|..   +.++|+.+|+.+.+.+ .++|.|||+ ++.. ..+.+++.+.|..  .....+.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g~   81 (155)
T COG0639           3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGL-SPGLDRLLDIIEVLDRLRACEVPHAGH   81 (155)
T ss_pred             hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCC-CcchhhhHHHHHHHhhhhcccCCCccc
Confidence            445567777766666554 5655   8999999999999988 899999998 6643 6778888887775  6677778


Q ss_pred             hhhhhcCCCCC--CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCC
Q 008730          439 MCELLWSDPQP--LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC  510 (556)
Q Consensus       439 ~~~llw~dp~~--~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~  510 (556)
                      ..+.+|++|..  ...|.+.++|.+..| ++....|+..+..+.+.|+|..+..++...+.+..+|+||+++||
T Consensus        82 ~~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~  154 (155)
T COG0639          82 THDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC  154 (155)
T ss_pred             cccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence            88889999885  578999999998777 788899998888888999999999999988887899999999987

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.3e-09  Score=106.39  Aligned_cols=134  Identities=24%  Similarity=0.325  Sum_probs=121.7

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------------VYYANRAFAHTKLEEYGSAIQDASKAI   75 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------------~a~~~lg~~~~~~g~~~~A~~~~~~al   75 (556)
                      ..++.++.+++..|.+++...+.+.|+..|+++|+++|++.            ..|...|.-.++.|+|.+|.+.|..+|
T Consensus       197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal  276 (486)
T KOG0550|consen  197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL  276 (486)
T ss_pred             hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence            34677889999999999999999999999999999999874            347778999999999999999999999


Q ss_pred             HhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           76 EIDPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        76 ~l~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      .++|++    ...|.++|.+..++|+.++|+..++.|++++|....++...+.|+..+++  +++|++.+++
T Consensus       277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~--~e~AV~d~~~  346 (486)
T KOG0550|consen  277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK--WEEAVEDYEK  346 (486)
T ss_pred             cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            999986    56799999999999999999999999999999999999999999999988  7888776653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.3e-08  Score=101.86  Aligned_cols=123  Identities=18%  Similarity=0.163  Sum_probs=115.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+..++.++.+.|+..+..|++++|.+.|++||.-+....+++++.|..+..+|+.++|+++|-+.-.+--++.++++.+
T Consensus       485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi  564 (840)
T KOG2003|consen  485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI  564 (840)
T ss_pred             ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34456778888999999999999999999999999999999999999999999999999999999877777889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +.+|..+.+..+|+++|.++..+-|+++.++..++.+|.+.|.
T Consensus       565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd  607 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD  607 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999999998876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.87  E-value=5e-08  Score=94.31  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      -...++..+..+|....+|++|++..++...+.+..     +..+..+|..+....+.+.|+..+.+|++.+|+.+.+-.
T Consensus       139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi  218 (389)
T COG2956         139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI  218 (389)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence            344567777778888888888888888877777664     456777787777777888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhh
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKL  132 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~~  132 (556)
                      .+|.++...|+|+.|++.|+++++.+|+. +.+...+..||..+|+.
T Consensus       219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~  265 (389)
T COG2956         219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP  265 (389)
T ss_pred             hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence            88888888888888888888888888775 45677777777777774

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.86  E-value=5.7e-08  Score=109.36  Aligned_cols=133  Identities=11%  Similarity=0.024  Sum_probs=109.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      -.|..++..+..+...++.|++++|+..|+++++.+|.++.+...++.++...|+.++|+.++++++.-+|.....+..+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            34667888999999999999999999999999999999965544888888899999999999999993333344444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      |.++..+|++++|++.|+++++.+|+++.++..++.++...++  .++|++...+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q--~~eAl~~l~~  161 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR--GGVVLKQATE  161 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHH
Confidence            7799999999999999999999999999999888777777665  5666665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.86  E-value=5.6e-09  Score=104.33  Aligned_cols=129  Identities=24%  Similarity=0.350  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .....+......+...++++++...++++....  +.++..|..+|.++.+.|+.++|+..|+++++++|+++.+...++
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~  187 (280)
T PF13429_consen  108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA  187 (280)
T ss_dssp             ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345666677788889999999999999977655  678889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|+++++...++...+..|+++..+..++.++..+|+  +++|+..++
T Consensus       188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~  238 (280)
T PF13429_consen  188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLE  238 (280)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHH
T ss_pred             HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccc
Confidence            999999999999999988888888888899999999999988  678877776

>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain

Probab=98.85  E-value=2.6e-08  Score=95.12  Aligned_cols=109  Identities=21%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             cceEeccCCCCHHHHH-HHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccc---
Q 008730          294 HFTVCGDVHGQFYDLL-NIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK---  369 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~-~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~---  369 (556)
                      +|+++|||||++.... +.++..    ..|.+|++||+++   .+.+++..|..+.    ..++.++||||.+....   
T Consensus         2 rIa~isDiHg~~~~~~~~~l~~~----~pD~Vl~~GDi~~---~~~~~~~~l~~l~----~p~~~V~GNHD~~~~~~~~~   70 (238)
T cd07397           2 RIAIVGDVHGQWDLEDIKALHLL----QPDLVLFVGDFGN---ESVQLVRAISSLP----LPKAVILGNHDAWYDATFRK   70 (238)
T ss_pred             EEEEEecCCCCchHHHHHHHhcc----CCCEEEECCCCCc---ChHHHHHHHHhCC----CCeEEEcCCCcccccccccc
Confidence            5899999999987643 344432    2357999999986   4677777776653    35889999999765321   


Q ss_pred             -c----------------cC------------------------c-hhhHHhhhh-HHHHHHHHHHhcccccccccCCeE
Q 008730          370 -I----------------YG------------------------F-EGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV  406 (556)
Q Consensus       370 -~----------------~g------------------------~-~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~  406 (556)
                       .                ++                        + ..++...|+ ....+.+...++.++.+......|
T Consensus        71 k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~V  150 (238)
T cd07397          71 KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLI  150 (238)
T ss_pred             hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeE
Confidence             0                00                        0 113444452 356667778888886444445589


Q ss_pred             EEEeccc
Q 008730          407 FVVHGGL  413 (556)
Q Consensus       407 ~~vHgGi  413 (556)
                      |+.|+++
T Consensus       151 liaH~~~  157 (238)
T cd07397         151 LLAHNGP  157 (238)
T ss_pred             EEeCcCC
Confidence            9999987

DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy

>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain

Probab=98.85  E-value=1.8e-08  Score=88.92  Aligned_cols=118  Identities=21%  Similarity=0.283  Sum_probs=79.8

Q ss_pred             cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChH--HHHHHHHhccccCCCeEEEeccccccccccccc
Q 008730          294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY  371 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~  371 (556)
                      +|.+|||+||++.    .+   .. ...+.+|++||++++|..+.  +++.++..++  .| .+++++||||....    
T Consensus         1 ~i~~isD~H~~~~----~~---~~-~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~~----   65 (135)
T cd07379           1 RFVCISDTHSRHR----TI---SI-PDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTLD----   65 (135)
T ss_pred             CEEEEeCCCCCCC----cC---cC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcCC----
Confidence            4889999999987    11   22 23567999999999986532  3555555443  22 36789999996421    


Q ss_pred             CchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCC
Q 008730          372 GFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP  451 (556)
Q Consensus       372 g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~  451 (556)
                                                   .-+.+++++||.+ .+..                      +..+.      
T Consensus        66 -----------------------------~~~~~ilv~H~~p-~~~~----------------------~~~~~------   87 (135)
T cd07379          66 -----------------------------PEDTDILVTHGPP-YGHL----------------------DLVSS------   87 (135)
T ss_pred             -----------------------------CCCCEEEEECCCC-CcCc----------------------ccccc------
Confidence                                         1255799999854 1100                      00000      


Q ss_pred             CCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCce
Q 008730          452 GRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE  493 (556)
Q Consensus       452 ~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~  493 (556)
                               ....|...+.+++++.+.+++|-||.-.+.|+.
T Consensus        88 ---------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~  120 (135)
T cd07379          88 ---------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE  120 (135)
T ss_pred             ---------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence                     124677888999999999999999999888876

239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5.3e-08  Score=90.53  Aligned_cols=110  Identities=25%  Similarity=0.316  Sum_probs=98.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHhhCHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQN----------AVYYANRAFAHTKLEEYGSAIQDA   71 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~----------~~a~~~lg~~~~~~g~~~~A~~~~   71 (556)
                      .-.....+...|+.+++.|+|.+|...|+.|+..        .|.+          ...+.|.++|+...|+|-++++.+
T Consensus       174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~  253 (329)
T KOG0545|consen  174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC  253 (329)
T ss_pred             hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence            3445678899999999999999999999999854        3443          456889999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           72 SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        72 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      ..++..+|.|..+||.+|.++...-+.++|.+.|.++|+++|.-..+-
T Consensus       254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            999999999999999999999999999999999999999999876654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.83  E-value=2.1e-08  Score=106.61  Aligned_cols=120  Identities=17%  Similarity=0.092  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      -..|...+..+...+.-++|..++.++-.++|..+..|+..|.++...|++++|.+.|..|+.+||+++....-+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            35566777888888888888888899999999989999999999999999999999999999999999989999999999


Q ss_pred             HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730           94 AMGKFKEALK--DFQQVKKLSPNDPDAAQKVKECEKAVKKLK  133 (556)
Q Consensus        94 ~~g~~~~A~~--~~~~al~l~p~~~~~~~~l~~~~~~~~~~~  133 (556)
                      ..|+..-|.+  .+..|++++|.++++|+.+|.+...+|+.+
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence            9888777777  888899999999999999999888888754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.83  E-value=2.1e-07  Score=78.28  Aligned_cols=103  Identities=27%  Similarity=0.339  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG   89 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg   89 (556)
                      ...+-..|..+...|+.+.|++.|.+++.+-|..+.+|++++.++.-.|+.++|++.+++|+++....    -.++..+|
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            45566778999999999999999999999999999999999999999999999999999999996554    35789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      .+|..+|+-+.|...|+.|.++.....
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            999999999999999999999876543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.5e-08  Score=102.74  Aligned_cols=119  Identities=22%  Similarity=0.304  Sum_probs=106.1

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN----SQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~----p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   81 (556)
                      -.|..+-.+..+|.+++..+.|.+|+.+|+.++..-    ++   -...+.++|.++.+++++++|+..|++++.+.|.+
T Consensus       409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            456677788999999999999999999999999432    22   24568999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      +.++-.+|.+|..+|+++.|+++|.+||.++|++..+-..|+.+..
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888777776543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.82  E-value=6.3e-08  Score=110.10  Aligned_cols=131  Identities=16%  Similarity=0.148  Sum_probs=119.8

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..+-+.........++.-.|++++|+..|.++...+|..+.++..+|.++...|++++|+..|+++++++|.++.++..+
T Consensus        10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   89 (765)
T PRK10049         10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL   89 (765)
T ss_pred             ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44555666777888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++...|++++|+..++++++..|++.. +..++.++...++  .++|+..+.
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~  140 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMT  140 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHH
Confidence            99999999999999999999999999999 9999999988877  566666655

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.82  E-value=3.3e-08  Score=110.21  Aligned_cols=138  Identities=13%  Similarity=0.112  Sum_probs=121.3

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730            1 MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (556)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   80 (556)
                      |+.....+-+|....++..+...+...+++++|+..++.+++..|+...+|+.+|.++.+.+++.+|...  .++..-+.
T Consensus        18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence            4556677888999999999999999999999999999999999999999999999999999988887666  66665555


Q ss_pred             Ch-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           81 YP-------------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        81 ~~-------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      +.                   .+++.+|.||.++|++++|...|+++++++|+|+.+.+++|-.+... +  .++|.++.
T Consensus        96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d--L~KA~~m~  172 (906)
T PRK14720         96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D--KEKAITYL  172 (906)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h--HHHHHHHH
Confidence            55                   89999999999999999999999999999999999999999988877 4  56666654


Q ss_pred             CC
Q 008730          142 ES  143 (556)
Q Consensus       142 ~~  143 (556)
                      .+
T Consensus       173 ~K  174 (906)
T PRK14720        173 KK  174 (906)
T ss_pred             HH
Confidence            43

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.6e-07  Score=88.11  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      |.+.+...-.|..+-..|.|++|+++|+..++-+|.+...+-..-.+...+|+-.+|++.+..-++..+.+.++|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            45555666778888899999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      +|...|++++|.-+|++.+-+.|-++..+..++.++..+|..
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~  204 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA  204 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999999999998877764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1e-07  Score=92.38  Aligned_cols=112  Identities=15%  Similarity=0.063  Sum_probs=101.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---HHHHHHHH
Q 008730           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK---FKEALKDF  105 (556)
Q Consensus        29 ~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~---~~~A~~~~  105 (556)
                      +.++.+.-++.-+..+|++++-|..||.+|+.+|++..|...|++|+++.|++++.+..+|.+++.+.+   ..+|...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            466777888999999999999999999999999999999999999999999999999999998887654   56899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       106 ~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++++++|.+..+...++..+...++  +++|+...+
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~--~~~A~~~Wq  251 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGD--YAEAAAAWQ  251 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            99999999999999999999998888  777766554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.78  E-value=3.5e-07  Score=99.07  Aligned_cols=109  Identities=21%  Similarity=0.250  Sum_probs=105.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      +....+|..+.+|+.+|.+|-.+|+.++|+..+-.|-.++|++.+.|..++....++|.++.|.-+|.+|++.+|.+.+.
T Consensus       164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~  243 (895)
T KOG2076|consen  164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL  243 (895)
T ss_pred             HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      .+.++..|.++|++..|...|.+++.+.|
T Consensus       244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  244 IYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.76  E-value=2.3e-07  Score=88.82  Aligned_cols=110  Identities=19%  Similarity=0.203  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR   87 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~   87 (556)
                      +...++.|..+++.|+|.+|...|..-++..|++   +.+++.||.+++.+|+|++|...|..+.+-.|+.   +++++.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            3448999999999999999999999999999986   6789999999999999999999999999988775   788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      +|.++..+|+.++|...|+++++..|+...+.....
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            999999999999999999999999999888765444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.74  E-value=5.1e-07  Score=78.58  Aligned_cols=108  Identities=27%  Similarity=0.363  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYY   86 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~   86 (556)
                      .+..++..|...++.|+|++|++.|+......|..   ..+...+|.+|++.++|++|+..+++-++++|.+   ..+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            36789999999999999999999999999998875   5788899999999999999999999999999987   56899


Q ss_pred             HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 008730           87 RRGAAYLAMGK---------------FKEALKDFQQVKKLSPNDPDAAQ  120 (556)
Q Consensus        87 ~lg~~~~~~g~---------------~~~A~~~~~~al~l~p~~~~~~~  120 (556)
                      ..|.+++.+..               ..+|...|++.++..|++..+-.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            99999999887               88999999999999999877644

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.72  E-value=7.5e-08  Score=99.28  Aligned_cols=90  Identities=22%  Similarity=0.330  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +...|..++..|+|++|+..|++|++++|+++.+|+++|.+|..+|++++|+..++++++++|+++.++..++.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhHHHHhcCCC
Q 008730          131 KLKFEEAIAVPE  142 (556)
Q Consensus       131 ~~~~~~Ai~~~~  142 (556)
                      +  +++|+..++
T Consensus        85 ~--~~eA~~~~~   94 (356)
T PLN03088         85 E--YQTAKAALE   94 (356)
T ss_pred             C--HHHHHHHHH
Confidence            8  788877766

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.6e-08  Score=91.40  Aligned_cols=101  Identities=38%  Similarity=0.568  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..+..+...|+.++....|..|+.+|.+|+.++|..+..|.+++.||+++++++.+...+++|++++|+.+.+++.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC
Q 008730           92 YLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~  112 (556)
                      +.....+++|+..+.+|..+.
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHH
Confidence            999999999999999997763

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.72  E-value=2.5e-08  Score=105.58  Aligned_cols=127  Identities=19%  Similarity=0.250  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      +++...+|...+..++|++|..+++.+++++|-....|+.+|.|..++++++.|.++|.+++.++|++.++|.+++.+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            44455556666778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..++..+|...+++|++.+-++...|.+...+....+.  +++|++.+.
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~  611 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYH  611 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHH
Confidence            99999999999999999999999999999988888887  677776654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=4.1e-08  Score=101.22  Aligned_cols=135  Identities=19%  Similarity=0.175  Sum_probs=125.9

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +..|+.+-.|+..|..|+..|++++|..+|.||..++|..+.+|...|..+.-.++.++|+.+|..|-++-|..-...+.
T Consensus       306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY  385 (611)
T KOG1173|consen  306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY  385 (611)
T ss_pred             HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE  144 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~  144 (556)
                      +|.-|.++++++.|.++|.+|+.+.|.++-+...+|.+....+.  +.+|...+..+
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~--y~~A~~~f~~~  440 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE--YPEALKYFQKA  440 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh--hHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877666  77777777643

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.71  E-value=3.4e-07  Score=93.46  Aligned_cols=122  Identities=22%  Similarity=0.183  Sum_probs=113.0

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..|+++..+...+.++...++.++|++.+++++.++|..+..+.++|.+|++.|++.+|+..++..+..+|+++..|..+
T Consensus       335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L  414 (484)
T COG4783         335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL  414 (484)
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence            56788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      |.+|..+|+-.+|...+...+.+......+...+..+..+.+
T Consensus       415 Aqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~  456 (484)
T COG4783         415 AQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK  456 (484)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999998887777777776665554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.71  E-value=3.3e-07  Score=78.41  Aligned_cols=96  Identities=22%  Similarity=0.137  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRR   88 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l   88 (556)
                      +++++.|..+-..|+.++|+..|+++++.....   ..++..+|.++..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999986554   578999999999999999999999999999888   78888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 008730           89 GAAYLAMGKFKEALKDFQQVKK  110 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~  110 (556)
                      +.++...|++++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988875

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.71  E-value=8e-08  Score=74.82  Aligned_cols=65  Identities=32%  Similarity=0.632  Sum_probs=34.8

Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730           56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ  120 (556)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  120 (556)
                      .+|.+.+++++|++.+++++.++|+++..++.+|.++..+|++++|+..|+++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555544443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=9.1e-08  Score=74.50  Aligned_cols=70  Identities=23%  Similarity=0.436  Sum_probs=65.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        21 g~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      ..+|...++|++|+++++++++++|.++.+|..+|.++.++|++++|+..++++++.+|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5688999999999999999999999999999999999999999999999999999999999888766554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.69  E-value=9e-07  Score=86.10  Aligned_cols=126  Identities=18%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---ANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY   85 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~---~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~   85 (556)
                      ..++.++..|..++..|+|++|++.|++++...|..+.+.   +.+|.++++.++|++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4577899999999999999999999999999999986554   889999999999999999999999999886   5689


Q ss_pred             HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhhHHHH
Q 008730           86 YRRGAAYLAMG---------------K---FKEALKDFQQVKKLSPNDPD---AAQKVKECEKAVKKLKFEEA  137 (556)
Q Consensus        86 ~~lg~~~~~~g---------------~---~~~A~~~~~~al~l~p~~~~---~~~~l~~~~~~~~~~~~~~A  137 (556)
                      +.+|.++..++               +   ..+|+..|++.++..|+...   +...+..+...+.+.++.-|
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia  182 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA  182 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999875554               1   35788999999999998754   45555566666655444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.69  E-value=5.2e-08  Score=74.73  Aligned_cols=64  Identities=27%  Similarity=0.458  Sum_probs=34.4

Q ss_pred             HhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           60 KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        60 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      +.|++++|+..|+++++.+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            4455555555555555555555555555555555555555555555555555555544444443

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.68  E-value=5e-08  Score=74.84  Aligned_cols=68  Identities=21%  Similarity=0.216  Sum_probs=62.4

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        24 ~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ++..|+|++|+..|++++..+|++..++..+|.+|++.|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999999999998888777653

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.68  E-value=2.2e-07  Score=98.28  Aligned_cols=135  Identities=19%  Similarity=0.245  Sum_probs=112.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus         6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      ..+..|........+|..|..+|+|++|+..+++|++.        .|.-......+|..|..+++|.+|+..|++|+.+
T Consensus       191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677888899999999999999999999999999998        5555666667999999999999999999999976


Q ss_pred             --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           78 --------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PNDPD---AAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        78 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~~~~---~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                              +|....++.+||.+|...|++++|..++++|+++.     ...++   .+..++.++..+++  +++|..++
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l~  348 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--YEEAKKLL  348 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--hhHHHHHH
Confidence                    45567799999999999999999999999999984     23333   44555556655555  77777776


Q ss_pred             C
Q 008730          142 E  142 (556)
Q Consensus       142 ~  142 (556)
                      .
T Consensus       349 q  349 (508)
T KOG1840|consen  349 Q  349 (508)
T ss_pred             H
Confidence            5

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=2.7e-07  Score=94.55  Aligned_cols=72  Identities=25%  Similarity=0.272  Sum_probs=55.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus         6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      .+..+|+.+.+++++|.+++..|+|++|+..|++|++++|++..+   |+++|.+|..+|++++|++++++|+++
T Consensus        67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345667777778888888888888888888888888888877744   777888887788888888888887776

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.67  E-value=4.5e-07  Score=97.49  Aligned_cols=127  Identities=14%  Similarity=0.059  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--------CHHHHHHHHHHHHHh--CC
Q 008730           13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--------EYGSAIQDASKAIEI--DP   79 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~al~l--~p   79 (556)
                      .+-.++..|..++..++   +++|+.+|++|++++|+++.++-.++.+|....        +...|.+..++++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45667778888877655   889999999999999999999999998886642        345666777776664  77


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++.++.-+|..+...|++++|...+++|++++| +..++..++.++...|+  .++|++.+.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~  477 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYS  477 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            7889999999999999999999999999999999 58899999999999998  688877776

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.66  E-value=2.3e-07  Score=101.16  Aligned_cols=120  Identities=14%  Similarity=0.134  Sum_probs=93.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+..++.++.+|..+..+|+|++|..+|.+++..+|++ .-.++.+|+.|++.|+++.|+.+|+++++..|++.++..-+
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            34556778888888888888888888888888888777 66777788888888888888888888888888888888888


Q ss_pred             HHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           89 GAAYLAMG----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        89 g~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      |.+|...+    ..+.|.....++++..|.+.+++..++.++...
T Consensus       383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~  427 (1018)
T KOG2002|consen  383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence            88777765    567778888888888888777777777666543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.66  E-value=6.2e-07  Score=86.86  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=94.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hHH
Q 008730            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKG   84 (556)
Q Consensus         6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~   84 (556)
                      ..+-....++.+++++..+....+.++|...+.+|++.+|++..+-..+|.+++..|+|+.|++.++.+++.||+. +++
T Consensus       172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev  251 (389)
T COG2956         172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV  251 (389)
T ss_pred             CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence            3444556788888888888888888888888888888888888888888888888888888888888888888886 667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      .-.+..||..+|+.++.+..+.++.+..++....
T Consensus       252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~  285 (389)
T COG2956         252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE  285 (389)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence            8888888888888888888888888887764433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.65  E-value=4.8e-07  Score=96.57  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=102.4

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHHhCCCChHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIEIDPRYPKGYY   86 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~--~~~~al~l~p~~~~~~~   86 (556)
                      -.+-.+..|+..|..+...|++++|.+.|..|+.++|+++.....+|.++.+.|+..-|..  .+..++++||.++++|+
T Consensus       679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~  758 (799)
T KOG4162|consen  679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY  758 (799)
T ss_pred             cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence            3466678899999999999999999999999999999999999999999999999888888  99999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      ++|.++.++|+.++|.++|..|+++++.+|
T Consensus       759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  759 YLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            999999999999999999999999998876

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=9.2e-07  Score=83.07  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=112.1

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +.+|.+.-.+...-.+...+|+--+|++.+.+-++..+.+.++|..++..|...|+|++|.-++++.+-++|-++..+.+
T Consensus       114 ~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r  193 (289)
T KOG3060|consen  114 EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR  193 (289)
T ss_pred             ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            45677777788888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           88 RGAAYLAMGK---FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        88 lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +|.+++-+|.   +.-|.++|.++++++|.+..+++.+-.+-..+.+
T Consensus       194 lae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  194 LAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            9999998875   6679999999999999988888887777665554

>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain

Probab=98.64  E-value=6.9e-07  Score=85.24  Aligned_cols=71  Identities=8%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      ++|.+++||||++..+.++++..... .-+.+|++||++++|+..-++..++..+... +..++.++||||..
T Consensus         5 ~kIl~iSDiHgn~~~le~l~~~~~~~-~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~   75 (224)
T cd07388           5 RYVLATSNPKGDLEALEKLVGLAPET-GADAIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP   75 (224)
T ss_pred             eEEEEEEecCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence            57999999999999999999865322 3457999999999997776777666666422 24689999999964

This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.64  E-value=1.6e-06  Score=82.08  Aligned_cols=126  Identities=24%  Similarity=0.310  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY   85 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~   85 (556)
                      ..++.++..|..++..|+|.+|+..|++.+...|..   ..+.+.+|.++++.|+|++|+..+++.++..|++   +.++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            357889999999999999999999999999998876   5789999999999999999999999999999986   4689


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhhHHHH
Q 008730           86 YRRGAAYLAMG-----------KFKEALKDFQQVKKLSPNDPD---AAQKVKECEKAVKKLKFEEA  137 (556)
Q Consensus        86 ~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~---~~~~l~~~~~~~~~~~~~~A  137 (556)
                      +.+|.+++.+.           ...+|+..|+..++..|+.+.   +...+..+...+.+.++.-|
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia  148 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA  148 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987653           345899999999999999854   44555566655555544444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.63  E-value=4.4e-07  Score=81.15  Aligned_cols=128  Identities=23%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY   85 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~   85 (556)
                      ..+...+.........++...+...+++.++.+|+.   ..+.+.+|.+++..|++++|+..|++++...|+.   ..+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            345566777777778999999999999999999998   5678889999999999999999999999987664   4588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++|.++...|++++|+..++.. .-.+-.+.++..+|.++...|+  +++|+..++
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~  142 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD--YDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            89999999999999999999763 3344456778889999988887  677776554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.62  E-value=4.6e-07  Score=72.60  Aligned_cols=90  Identities=31%  Similarity=0.494  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      +++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|++.++++++..|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhHHHHhcCC
Q 008730          130 KKLKFEEAIAVP  141 (556)
Q Consensus       130 ~~~~~~~Ai~~~  141 (556)
                      ++  +++|....
T Consensus        82 ~~--~~~a~~~~   91 (100)
T cd00189          82 GK--YEEALEAY   91 (100)
T ss_pred             Hh--HHHHHHHH
Confidence            77  55655443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.5e-07  Score=92.07  Aligned_cols=112  Identities=20%  Similarity=0.140  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      .++..|+--|...+..++|+.|+.+-.++++.+|++.+++...|.++..+++.++|+-+|+.|..+.|...+.|-.+-.+
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS  377 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            44666788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      |...|+..||...-+.+++.-|.+..++..++
T Consensus       378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            99999888888777777777777777776665

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.62  E-value=5.6e-07  Score=80.71  Aligned_cols=97  Identities=22%  Similarity=0.259  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--
Q 008730           30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE----------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK--   97 (556)
Q Consensus        30 ~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~--   97 (556)
                      |+.|.+.++.....+|.+++++++-|.++.++.+          +++|+.-|++|+.++|+..++++++|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            7889999999999999999999999999888744          6789999999999999999999999999987764  


Q ss_pred             ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           98 ---------FKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        98 ---------~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                               +++|..+|++|...+|++......|..+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                     78899999999999999988877776653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.62  E-value=3.6e-07  Score=83.87  Aligned_cols=108  Identities=19%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCH
Q 008730           24 AFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKF   98 (556)
Q Consensus        24 ~~~~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~   98 (556)
                      ++-.+.|..+...+.+.++.++.+  ..+++.+|.++..+|++++|+..|++++.+.|+.   +.+++++|.++...|++
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            344556777777787766666666  6678999999999999999999999999997763   46899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++|++.|++++++.|.+...+..++.++..+++
T Consensus        89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~  121 (168)
T CHL00033         89 TKALEYYFQALERNPFLPQALNNMAVICHYRGE  121 (168)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999885553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.61  E-value=1.6e-07  Score=96.09  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=66.7

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG---YYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        43 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                      .+|+++.+|+++|.+|.++|+|++|+..|++|++++|++..+   |+++|.+|..+|++++|++++++|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            478899999999999999999999999999999999999865   9999999999999999999999999983

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.7e-07  Score=88.66  Aligned_cols=110  Identities=30%  Similarity=0.482  Sum_probs=99.1

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      ....|+.+...|+.|++.++|..|...|.++|+..-.+    +..|.|+|.|...+|+|..|+.++.+|+.++|.+..++
T Consensus        77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~  156 (390)
T KOG0551|consen   77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY  156 (390)
T ss_pred             hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence            34468889999999999999999999999999986443    56799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      ++-|.|+..+.++++|..+++..+.++.+...+.
T Consensus       157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~  190 (390)
T KOG0551|consen  157 IRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI  190 (390)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            9999999999999999999999988876554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.61  E-value=1.1e-06  Score=78.44  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +....+.+.+|..++..|++++|+..|+++++..|+.   ..++..+|.++...|++++|+..++. +.-.+-.+.++..
T Consensus        45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~  123 (145)
T PF09976_consen   45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL  123 (145)
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence            3457888899999999999999999999999988665   46788999999999999999999976 3344456778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 008730           88 RGAAYLAMGKFKEALKDFQQVK  109 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al  109 (556)
                      +|.+|...|++++|+..|++|+
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999885

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain

Probab=98.60  E-value=1.5e-06  Score=80.32  Aligned_cols=109  Identities=18%  Similarity=0.296  Sum_probs=74.1

Q ss_pred             cceEeccCC-CCHH-----HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730          294 HFTVCGDVH-GQFY-----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  367 (556)
Q Consensus       294 ~i~vigDiH-G~~~-----~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~  367 (556)
                      +|.||||+| |.-.     .+.++++.    ..-+.+|.+||+++     .+++.++..+.    ..++.++||||... 
T Consensus         1 ~i~viSDtHl~~~~~~~~~~~~~~~~~----~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~~-   66 (178)
T cd07394           1 LVLVIGDLHIPHRASDLPAKFKKLLVP----GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDENL-   66 (178)
T ss_pred             CEEEEEecCCCCCchhhHHHHHHHhcc----CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCccc-
Confidence            378999999 6543     35555543    23457999999986     77777776653    25899999999631 


Q ss_pred             ccccCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhc
Q 008730          368 NKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLW  444 (556)
Q Consensus       368 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw  444 (556)
                                                 .+|....+   +.+++++||....                           .|
T Consensus        67 ---------------------------~lp~~~~~~~~g~~i~l~HG~~~~---------------------------~~   92 (178)
T cd07394          67 ---------------------------NYPETKVITVGQFKIGLIHGHQVV---------------------------PW   92 (178)
T ss_pred             ---------------------------cCCCcEEEEECCEEEEEEECCcCC---------------------------CC
Confidence                                       35554433   4589999984200                           00


Q ss_pred             CCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccc
Q 008730          445 SDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD  489 (556)
Q Consensus       445 ~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~  489 (556)
                      .                   +.+.+..+.+..+.+++|-||+-.+
T Consensus        93 ~-------------------~~~~~~~~~~~~~~dvii~GHTH~p  118 (178)
T cd07394          93 G-------------------DPDSLAALQRQLDVDILISGHTHKF  118 (178)
T ss_pred             C-------------------CHHHHHHHHHhcCCCEEEECCCCcc
Confidence            0                   1345566677889999999999865

Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.58  E-value=4.6e-07  Score=94.97  Aligned_cols=119  Identities=13%  Similarity=0.160  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      -.+++..+.-.+..++|.+.+...++.|+-.|++++.+...|..+..+|+-++|....+.++..|+.+.-.|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      ...+|++|+++|+.|+.++|+|...++.++.++.+++..
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            777777777777777777777777777777766666654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.56  E-value=9e-07  Score=99.81  Aligned_cols=119  Identities=15%  Similarity=0.187  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      .....+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|++.+++++..+|.+... ..++.+
T Consensus       100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL  178 (822)
T PRK14574        100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYL  178 (822)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHH
Confidence            3345555557777888888888888888888888888888777788888888888888888888888875444 445555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +...++..+|++.|+++++.+|++.+++..+..+....+-
T Consensus       179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            5556677668888888888888888887777777666665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.56  E-value=4.3e-07  Score=77.56  Aligned_cols=93  Identities=31%  Similarity=0.395  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQK  121 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~  121 (556)
                      +..++.+|..+.+.|++++|+..|+++++.+|++   +.+++.+|.++...|++++|+..|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999886   5799999999999999999999999999999886   578889


Q ss_pred             HHHHHHHHhhhhHHHHhcCCC
Q 008730          122 VKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       122 l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.++..+++  +++|+..+.
T Consensus        82 ~~~~~~~~~~--~~~A~~~~~  100 (119)
T TIGR02795        82 LGMSLQELGD--KEKAKATLQ  100 (119)
T ss_pred             HHHHHHHhCC--hHHHHHHHH
Confidence            9999888777  566665554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=4.8e-07  Score=87.60  Aligned_cols=131  Identities=13%  Similarity=0.225  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..++.+..++.+|.+..+...|+..|.+.++..|.+...+...+.++..++++++|++.|+.+++++|.+.++.-..|.-
T Consensus       254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence            34566777788888888888888888888888888888888888899999999999999999999999999998888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh-----HHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-----~~~Ai~~~~  142 (556)
                      |+..++.+-|+.+|++.|++.-.+++.+.+++.|....++.+     ++.|+....
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence            999999999999999999999999999999999888777754     555555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.54  E-value=8.4e-07  Score=91.64  Aligned_cols=129  Identities=18%  Similarity=0.205  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----HhCCCChHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----EIDPRYPKGYYR   87 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----~l~p~~~~~~~~   87 (556)
                      +..+.....+..+...|++++|+..++++++.+|++..++.. +..+...+++..+.....+++    ..+|....++..
T Consensus        41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  119 (355)
T cd05804          41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM  119 (355)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence            445667788999999999999999999999999999887775 555555554444444444444    456677778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      +|.++...|++++|+..+++++++.|++..++..++.++...++  +++|+....+
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~~  173 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFMES  173 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHh
Confidence            88899999999999999999999999998888888888888777  6777776653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.54  E-value=6.3e-07  Score=97.79  Aligned_cols=135  Identities=19%  Similarity=0.170  Sum_probs=117.7

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS---QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PK   83 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~   83 (556)
                      .+++.++.++..+++.++..|+|+.+...+..++...-   --++.++++|.+|+.+|+|++|..+|.++++.+|++ .-
T Consensus       264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l  343 (1018)
T KOG2002|consen  264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL  343 (1018)
T ss_pred             hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence            34567788899999999999999999999999998753   345679999999999999999999999999999998 88


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--hhHHHHhcCCC
Q 008730           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK--LKFEEAIAVPE  142 (556)
Q Consensus        84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~--~~~~~Ai~~~~  142 (556)
                      +++.+|+.|...|+++.|+.+|++.++..|++.+....+|.+|...++  ...++|..+..
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~  404 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG  404 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887741  22455555444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.54  E-value=2.6e-07  Score=100.72  Aligned_cols=132  Identities=22%  Similarity=0.242  Sum_probs=113.1

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH------------------------------------HH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY------------------------------------YA   52 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a------------------------------------~~   52 (556)
                      -++.-+.++..+|..|...-|...|..+|++|.++|+.++.+                                    |.
T Consensus       487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~  566 (1238)
T KOG1127|consen  487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV  566 (1238)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence            456678888999999998889999999999999999887544                                    55


Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        53 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      .+|..|.+.+++.+|+..++.|++.+|++..+|..+|.+|...|++..|++.|.+|..++|.+..+.+..+.....+|+ 
T Consensus       567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-  645 (1238)
T KOG1127|consen  567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK-  645 (1238)
T ss_pred             hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh-
Confidence            5777777777888889999999999999999999999999999999999999999999999999998888888887777 


Q ss_pred             hHHHHhcCCC
Q 008730          133 KFEEAIAVPE  142 (556)
Q Consensus       133 ~~~~Ai~~~~  142 (556)
                       |.+|+....
T Consensus       646 -Ykeald~l~  654 (1238)
T KOG1127|consen  646 -YKEALDALG  654 (1238)
T ss_pred             -HHHHHHHHH
Confidence             666665543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=5.9e-07  Score=82.29  Aligned_cols=115  Identities=21%  Similarity=0.211  Sum_probs=107.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ++...+..++++|..|-..|-+.-|.-.|.+++.+.|.-+.+++.+|.-+...|+|+.|.+.|..++++||.+-.+..++
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      |..++.-|++.-|.+.+.+-.+.+|++|.--..+-
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY  174 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY  174 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence            99999999999999999999999999986444333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.54  E-value=2.6e-06  Score=83.04  Aligned_cols=110  Identities=20%  Similarity=0.236  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   95 (556)
                      .+......++..|++..|+++..+.|++.|-++..+..++.||...|+...|+..++.+-++..++.+.+|..+..++..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            34556667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      |+.+.++...+.+|+++|++...+-.+..+
T Consensus       237 gd~~~sL~~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             hhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence            999999999999999999988765544443

>PRK11906 transcriptional regulator; Provisional

Probab=98.53  E-value=1.6e-06  Score=89.04  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=99.9

Q ss_pred             CCChhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 008730            8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID   78 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~---------g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   78 (556)
                      +-+|..+.++..++.+++..         .+-.+|.+..++|++++|.++.++..+|.++...++++.|+..|++|+.++
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~  368 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS  368 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence            55677788888888777644         356678999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      |+.+.+++..|.+....|+.++|++.+++|++++|.-..+
T Consensus       369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            9999999999999999999999999999999999976544

>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain

Probab=98.53  E-value=6.9e-07  Score=77.34  Aligned_cols=118  Identities=25%  Similarity=0.342  Sum_probs=81.7

Q ss_pred             eEeccCCCCHHHHHHHH--HhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCc
Q 008730          296 TVCGDVHGQFYDLLNIF--ELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  373 (556)
Q Consensus       296 ~vigDiHG~~~~l~~~l--~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~  373 (556)
                      +++||+|+.........  ..... ...+.+|++||+++.+....+...............++++.||||          
T Consensus         1 ~~~gD~h~~~~~~~~~~~~~~~~~-~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----------   69 (131)
T cd00838           1 AVISDIHGNLEALEAVLEAALAAA-EKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----------   69 (131)
T ss_pred             CeeecccCCccchHHHHHHHHhcc-cCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce----------
Confidence            47999999999888764  22222 234679999999999988777665422333345578999999999          


Q ss_pred             hhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCC
Q 008730          374 EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR  453 (556)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~  453 (556)
                                                      ++++|+++ .+.....                     .+..       
T Consensus        70 --------------------------------i~~~H~~~-~~~~~~~---------------------~~~~-------   88 (131)
T cd00838          70 --------------------------------ILLTHGPP-YDPLDEL---------------------SPDE-------   88 (131)
T ss_pred             --------------------------------EEEeccCC-CCCchhh---------------------cccc-------
Confidence                                            89999876 2211000                     0000       


Q ss_pred             CcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE
Q 008730          454 GPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI  494 (556)
Q Consensus       454 ~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~  494 (556)
                               ......+...+...+...+|.||.-....+..
T Consensus        89 ---------~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~  120 (131)
T cd00838          89 ---------DPGSEALLELLEKYGVDLVLSGHTHVYERREP  120 (131)
T ss_pred             ---------hhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence                     00567888889999999999999987665543

Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.52  E-value=1.1e-06  Score=90.75  Aligned_cols=103  Identities=18%  Similarity=0.110  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----HHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KGYY   86 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~   86 (556)
                      |.....+..+|..+...|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|..+    ..+.
T Consensus       111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~  190 (355)
T cd05804         111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWW  190 (355)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHH
Confidence            333444444555555555555555555555555555555555555555555555555555555555544221    2233


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      .+|.++...|++++|+..|++++...|
T Consensus       191 ~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         191 HLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            455555555555555555555544333

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=98.51  E-value=3e-06  Score=89.45  Aligned_cols=129  Identities=13%  Similarity=0.113  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-KGYYRRGA   90 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~   90 (556)
                      ..+......|...+..|++++|.+...++.+..|+....+...|.++.+.|+++.|..++.++.+..|++. .+....+.
T Consensus        82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~  161 (409)
T TIGR00540        82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence            34666778899999999999999999999999999888888889999999999999999999999999875 56666799


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++...|++++|...+++.++..|+++.++..++.++...++  +++|.+..+
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d--~~~a~~~l~  211 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA--WQALDDIID  211 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence            99999999999999999999999999999999999988887  677766654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1e-06  Score=88.47  Aligned_cols=100  Identities=21%  Similarity=0.211  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...+.+++.++.+.++|.+|+..++++|+++|+|..+++.+|.++..+++|+.|+..|++|++++|.|-.+...+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HcCCHHHH-HHHHHHHHHhCC
Q 008730           94 AMGKFKEA-LKDFQQVKKLSP  113 (556)
Q Consensus        94 ~~g~~~~A-~~~~~~al~l~p  113 (556)
                      +..++.+. .+.|.+++..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            77766554 677777766543

>TIGR00540 hemY_coli hemY protein

Probab=98.49  E-value=1.3e-06  Score=92.19  Aligned_cols=128  Identities=15%  Similarity=0.065  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh--HHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY--ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--KGYYR   87 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~   87 (556)
                      +....+..+|..+...|++++|++.++++++..|++....  ..........++.+.+++.++++++.+|+++  ..+..
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            5788899999999999999999999999999999987532  2233334456888999999999999999999  88999


Q ss_pred             HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQ--QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|.++++.|++++|.++|+  ++++..|++.. +..++.++..+|+  .++|.++++
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~--~~~A~~~~~  394 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD--KAEAAAMRQ  394 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999999999999  68888888766 5599999999888  455555544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.48  E-value=2.2e-06  Score=78.97  Aligned_cols=87  Identities=20%  Similarity=0.344  Sum_probs=79.9

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      +..+.+++.+|..+...|++++|+..|+++++..|+.   ..+++.+|.++..+|++++|+..++++++..|++..++..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3567789999999999999999999999999987764   4699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 008730          122 VKECEKAVKK  131 (556)
Q Consensus       122 l~~~~~~~~~  131 (556)
                      ++.++..+++
T Consensus       112 lg~~~~~~g~  121 (172)
T PRK02603        112 IAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHcCC
Confidence            9999988776

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.47  E-value=2.5e-07  Score=89.49  Aligned_cols=124  Identities=14%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----------------------------------YAN   53 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a----------------------------------~~~   53 (556)
                      +.-|.++..+...+.++...+++++|+++|+.+++++|.+.++                                  +.+
T Consensus       284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~N  363 (478)
T KOG1129|consen  284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCN  363 (478)
T ss_pred             hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhh
Confidence            4456667777788888888888888888888888887776555                                  455


Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           54 RAFAHTKLEEYGSAIQDASKAIEIDP--R-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        54 lg~~~~~~g~~~~A~~~~~~al~l~p--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +|.|.+..++++-++..|++|+..-.  + -.++||++|.+....|++..|..+|+-||.-+|++.+++.+++.+..+.|
T Consensus       364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G  443 (478)
T KOG1129|consen  364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG  443 (478)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence            55555555555555555555554321  1 24455555555555555555555555555555666666666665555555


Q ss_pred             h
Q 008730          131 K  131 (556)
Q Consensus       131 ~  131 (556)
                      .
T Consensus       444 ~  444 (478)
T KOG1129|consen  444 D  444 (478)
T ss_pred             c
Confidence            4

>PRK11906 transcriptional regulator; Provisional

Probab=98.47  E-value=1.4e-06  Score=89.54  Aligned_cols=125  Identities=15%  Similarity=0.028  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHcc---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhCCC
Q 008730           16 ELKALANEAFRAK---KYSQAIDLYSQAI---ELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDPR   80 (556)
Q Consensus        16 ~~~~lg~~~~~~g---~~~~Al~~~~~al---~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~   80 (556)
                      .++..|...+..+   ..+.|+.+|.+|+   +++|..+.+|..++.|+...         .+-.+|.+..++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4466777776554   4567899999999   99999999999999998875         2356889999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.++..+|.++...++++.|...|++|+.++|+.+.++...+.+....|+  .++|++..+
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~  396 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICID  396 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888887  567766554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.47  E-value=3.5e-06  Score=86.94  Aligned_cols=116  Identities=20%  Similarity=0.215  Sum_probs=105.5

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (556)
Q Consensus        22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A  101 (556)
                      ..+...++++.|++.+++..+.+|+   +...++.++...++..+|++.+.++++.+|.+...+...|..+...++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            4445678999999999999998876   5567899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       102 ~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++..++|.++.|++...|..|+.+|..+++  +++|+....
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALlaLN  292 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALLALN  292 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHHHHh
Confidence            999999999999999999999999999998  788876544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.5e-06  Score=86.71  Aligned_cols=130  Identities=21%  Similarity=0.271  Sum_probs=112.7

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----------------------------------YANR   54 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a----------------------------------~~~l   54 (556)
                      .-+.+...+..+|.+++..|++.+|+..|+++.-++|....+                                  |+--
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            346778889999999999999999999999999999986443                                  4445


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhH
Q 008730           55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKF  134 (556)
Q Consensus        55 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~  134 (556)
                      +...+..++|+.|+.+-+++++.+|.+..++...|.++.++++.++|+-.|+.|..+.|.+-+.+..+-.+|...++  +
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~--~  384 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR--F  384 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch--H
Confidence            55666677888999999999999999999999999999999999999999999999999999999999999888777  5


Q ss_pred             HHHhcC
Q 008730          135 EEAIAV  140 (556)
Q Consensus       135 ~~Ai~~  140 (556)
                      .||...
T Consensus       385 kEA~~~  390 (564)
T KOG1174|consen  385 KEANAL  390 (564)
T ss_pred             HHHHHH
Confidence            565443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.47  E-value=2.6e-06  Score=90.22  Aligned_cols=133  Identities=26%  Similarity=0.245  Sum_probs=115.0

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-   78 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-   78 (556)
                      ...+.-+..+.+++..+...+++++|+.+|++++++.        +.-+..+.++|.+|..+|+|++|.+.|++|+++. 
T Consensus       319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR  398 (508)
T ss_pred             cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            4567778889999999999999999999999999873        2346789999999999999999999999999874 


Q ss_pred             -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           79 -------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        79 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                             +....++.++|..|.+++++.+|.+.|.++..+.       |+-...+.+|+.+|..+|+  +++|+++..
T Consensus       399 ~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~--~e~a~~~~~  474 (508)
T KOG1840|consen  399 ELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN--YEAAEELEE  474 (508)
T ss_pred             hcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence                   3346789999999999999999999999998873       4456788999999999999  788877765

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional

Probab=98.46  E-value=3.5e-07  Score=89.18  Aligned_cols=210  Identities=16%  Similarity=0.273  Sum_probs=106.2

Q ss_pred             CcceEeccCCCCH------HHHHHHHHhcCCCCCCCCeeeecccccC-------CCChHHHHHHHHhccccCCCeEEEec
Q 008730          293 KHFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDR-------GSFSVEVILTLFAFKCMCPSAIYLSR  359 (556)
Q Consensus       293 ~~i~vigDiHG~~------~~l~~~l~~~~~~~~~~~~vflGD~vdr-------G~~s~e~l~~l~~lk~~~p~~v~~lr  359 (556)
                      +++++|+|+|...      ..+.+.++...  ...+.++++||++|.       .+...+++.+|..++.. +-.|++++
T Consensus         1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~--~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~   77 (241)
T PRK05340          1 MPTLFISDLHLSPERPAITAAFLRFLRGEA--RQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMH   77 (241)
T ss_pred             CcEEEEeecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEe
Confidence            4689999999542      24555554322  234679999999985       23346677777777532 24799999


Q ss_pred             ccccccccccccCchhhHHhhhhHHHHHHHHHHhcccc--ccccc-CCeEEEEecccccCCCCChhhhhhcccCCCCCCc
Q 008730          360 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLP--LAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEE  436 (556)
Q Consensus       360 GNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP--~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~  436 (556)
                      ||||.....               .+.+...  +..+|  ....+ +.+++++||-............+++-|.  +   
T Consensus        78 GNHD~~~~~---------------~~~~~~g--~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~--~---  135 (241)
T PRK05340         78 GNRDFLLGK---------------RFAKAAG--MTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN--P---  135 (241)
T ss_pred             CCCchhhhH---------------HHHHhCC--CEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC--H---
Confidence            999964311               0000000  12233  22222 4579999997622111111222222221  0   


Q ss_pred             cchhhhhcCCCCCCC-----CC------CcCCCCCc-cccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEe
Q 008730          437 GLMCELLWSDPQPLP-----GR------GPSKRGVG-LSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVF  504 (556)
Q Consensus       437 ~~~~~llw~dp~~~~-----~~------~~~~rg~g-~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvf  504 (556)
                      -...-+. .=|....     .+      ....+..- ....++.+.+.+++.+++.+|-||.-.+.-.....++.-++-.
T Consensus       136 ~~~~~~~-~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~  214 (241)
T PRK05340        136 WLQWLFL-ALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRI  214 (241)
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEE
Confidence            0000011 0110000     00      00001111 2345677888889999999999999765433333333222333


Q ss_pred             cCCCCCCCCCCeEEEEEEecCCCceeEEEE
Q 008730          505 SAPNYCDQMGNKGAFIRFEAPTLKPNIVTF  534 (556)
Q Consensus       505 Sa~~y~~~~~n~~a~~~~~~~~~~~~~~~~  534 (556)
                      +-++.    ...+.++.+.++.  +++..|
T Consensus       215 ~lgdw----~~~~~~~~~~~~~--~~~~~~  238 (241)
T PRK05340        215 VLGDW----HEQGSVLKVDADG--VELIPF  238 (241)
T ss_pred             EeCCC----CCCCeEEEEECCc--eEEEeC
Confidence            33333    2347888884443  455554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.44  E-value=6.2e-07  Score=70.80  Aligned_cols=67  Identities=24%  Similarity=0.354  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      |+.+..+.++|.++...|+|++|+.+|++++++.       |..+.++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5566667777777777777777777777776551       112445666666666666666666666666654

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.44  E-value=1.3e-06  Score=91.60  Aligned_cols=130  Identities=13%  Similarity=0.128  Sum_probs=120.3

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..|.+.+.+...|..+...|+-++|..+.+.+++.++.+...|.-+|.++...++|++|+.+|+.|+.++|+|...|.-+
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            46777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~  140 (556)
                      +....++++++.....-.+.+++.|.....|..++..+...++  +..|+.+
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~--y~~A~~i  165 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE--YKMALEI  165 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            9999999999999999999999999999999999988888877  4444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.43  E-value=3.5e-07  Score=73.46  Aligned_cols=79  Identities=33%  Similarity=0.531  Sum_probs=69.5

Q ss_pred             hhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHh
Q 008730           61 LEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI  138 (556)
Q Consensus        61 ~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai  138 (556)
                      .|+|++|+..++++++.+|.  +...++.+|.||+++|++++|+..+++ .+.+|.+......+|.++..+++  +++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHHH
Confidence            68999999999999999995  467788899999999999999999999 88889888999999999999998  78888


Q ss_pred             cCCC
Q 008730          139 AVPE  142 (556)
Q Consensus       139 ~~~~  142 (556)
                      +.++
T Consensus        79 ~~l~   82 (84)
T PF12895_consen   79 KALE   82 (84)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.40  E-value=2.8e-06  Score=91.39  Aligned_cols=110  Identities=16%  Similarity=0.090  Sum_probs=94.0

Q ss_pred             CCChhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730            8 NSSVSRAEELKALANEAFRA--------KKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~--------g~~~~Al~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      +.+|+.+.++..++.++...        .+..+|....++++.+  +|.++.++..+|..+...|++++|...+++|+.+
T Consensus       370 ~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L  449 (517)
T PRK10153        370 KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL  449 (517)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            45677777888777766543        2355667777777664  7888899999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        78 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      +| +..+|..+|.++...|++++|++.|++|++++|.++..
T Consensus       450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            99 58899999999999999999999999999999998863

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.39  E-value=4.5e-06  Score=87.73  Aligned_cols=128  Identities=15%  Similarity=0.113  Sum_probs=108.8

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..++.+......+..+...|+.++|...++++++ .|.++......+.+  ..++.+++++.+++.++.+|+++..++.+
T Consensus       258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l  334 (398)
T PRK10747        258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL  334 (398)
T ss_pred             HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            3456778889999999999999999999999999 45566555555543  44999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++...+++++|.++|+++++..|++.. +..++.++...|+  .++|..++.
T Consensus       335 grl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~--~~~A~~~~~  385 (398)
T PRK10747        335 GQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK--PEEAAAMRR  385 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999998654 5579999998888  466655554

>PRK15331 chaperone protein SicA; Provisional

Probab=98.38  E-value=2.9e-06  Score=75.57  Aligned_cols=99  Identities=14%  Similarity=-0.002  Sum_probs=89.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        42 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      .+.++.-+..+..|.-++..|++++|...|+-....+|.+++.++.||.|+..+++|++|+..|..|..++++++...+.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34555667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHhcCCC
Q 008730          122 VKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       122 l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+.|+..+++  .++|...+.
T Consensus       111 agqC~l~l~~--~~~A~~~f~  129 (165)
T PRK15331        111 TGQCQLLMRK--AAKARQCFE  129 (165)
T ss_pred             HHHHHHHhCC--HHHHHHHHH
Confidence            9999999998  455555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.38  E-value=9.4e-06  Score=85.29  Aligned_cols=128  Identities=16%  Similarity=0.109  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCHHHHHHHHHHHHHhCCCChH-HHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR-AFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRG   89 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~l-g~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg   89 (556)
                      ..+...+..|...+..|+|++|.+...++-+..+. +..++.+ +.+..+.|+++.|..++.++.+.+|++.. .....+
T Consensus        82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a  160 (398)
T PRK10747         82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV  160 (398)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            45666788899999999999999887776664433 4555555 56669999999999999999999999754 444559


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|++++|.+.++++.+.+|+++.++..++.++...++  +++|++..+
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~a~~~l~  211 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSSLLDILP  211 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence            999999999999999999999999999999999999988877  788876655

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=2.7e-06  Score=85.46  Aligned_cols=116  Identities=18%  Similarity=0.119  Sum_probs=81.0

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +.+.+-.+++++.|..+-..|+.++|+++|-+.-.+--++++.++.++.+|..+.+...|++++.++..+-|++|..+..
T Consensus       518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk  597 (840)
T KOG2003|consen  518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK  597 (840)
T ss_pred             cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence            34455667788888888888888888888877777777777788888888888888888888888888777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      +|..|-+.|+-.+|.+++-...+..|.+.+....++
T Consensus       598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            777777666655444444444444444444444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.34  E-value=1.8e-05  Score=71.03  Aligned_cols=119  Identities=24%  Similarity=0.311  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRG   89 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg   89 (556)
                      +.+..+.+|+.+...|++.+|...|++++. +...++..+..++.+.+..+++..|...+++..+.+|.  .++....+|
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a  167 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA  167 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence            466788999999999999999999999997 46778999999999999999999999999999999986  588899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      .+|..+|++++|...|+.++...|+ +.+...++..+..+|+.
T Consensus       168 R~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         168 RTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRL  209 (251)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence            9999999999999999999999987 56666677777777763

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.34  E-value=1.5e-06  Score=92.31  Aligned_cols=127  Identities=19%  Similarity=0.247  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----------------------------HHHHHHHHHHHhhCHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV----------------------------YYANRAFAHTKLEEYG   65 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~----------------------------a~~~lg~~~~~~g~~~   65 (556)
                      ...|.....+|...|+..+|.....+-++ .|.++.                            |.+.+|......++|+
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence            34455555666666666666666666555 333333                            3344444445568899


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh-----HHHHhcC
Q 008730           66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAV  140 (556)
Q Consensus        66 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-----~~~Ai~~  140 (556)
                      +|.++++..++++|-....||.+|.+..++++++.|.++|.+++.++|++..+|++++.++..+++.+     ..+|++.
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999888753     5566555


Q ss_pred             C
Q 008730          141 P  141 (556)
Q Consensus       141 ~  141 (556)
                      .
T Consensus       583 n  583 (777)
T KOG1128|consen  583 N  583 (777)
T ss_pred             C
Confidence            4

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=1.6e-06  Score=90.17  Aligned_cols=126  Identities=15%  Similarity=0.192  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      ....++.--+.+...++|++|+....+.+...|++..+..+.-.|+++.++|++|+...++-....-.+. ..+..|.|.
T Consensus        11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~   89 (652)
T KOG2376|consen   11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCE   89 (652)
T ss_pred             cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHH
Confidence            3467788888899999999999999999999999999999999999999999999955544433222222 227999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE  144 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~  144 (556)
                      ++++..++|+..++   -+++.+.......+++..++++  |++|+..+..-
T Consensus        90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--ydealdiY~~L  136 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--YDEALDIYQHL  136 (652)
T ss_pred             HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence            99999999999999   5577777788888999999988  89998887643

>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain

Probab=98.33  E-value=4.6e-06  Score=76.32  Aligned_cols=68  Identities=19%  Similarity=0.114  Sum_probs=47.4

Q ss_pred             ceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          295 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       295 i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      +.++||+|+....+...+...-.....+.++++||+++++.....+. ++..  ...+..+++++||||..
T Consensus         1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~   68 (166)
T cd07404           1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY   68 (166)
T ss_pred             CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence            46899999998877665532222234567999999999987665543 2222  22446799999999986

MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.33  E-value=6.4e-07  Score=70.73  Aligned_cols=67  Identities=27%  Similarity=0.446  Sum_probs=57.8

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      |.-+.++.++|.+|..+|+|++|+.+|++++++.       |....++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3446789999999999999999999999999761       223678999999999999999999999999986

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.30  E-value=5.4e-06  Score=85.56  Aligned_cols=95  Identities=24%  Similarity=0.319  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      +....++.++...++..+|+..+.++++..|.++..+...+..+.+.++++.|+...++++.+.|++..+|+.||.+|..
T Consensus       201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            35566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 008730           95 MGKFKEALKDFQQVK  109 (556)
Q Consensus        95 ~g~~~~A~~~~~~al  109 (556)
                      +|++++|+..++.+=
T Consensus       281 ~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  281 LGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHhcCc
Confidence            999999998877553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain

Probab=98.28  E-value=1.8e-05  Score=73.70  Aligned_cols=65  Identities=20%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             ceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh-HHHHHHHHhccccCCCeEEEecccccccc
Q 008730          295 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-VEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       295 i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      |.++||+||++..+..  ..... ...|.+|+.||++++|... .+.+..+..+    +..++.++||||...
T Consensus         1 i~~~sD~H~~~~~~~~--~~~~~-~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~----~~p~~~v~GNHD~~~   66 (188)
T cd07392           1 ILAISDIHGDVEKLEA--IILKA-EEADAVIVAGDITNFGGKEAAVEINLLLAI----GVPVLAVPGNCDTPE   66 (188)
T ss_pred             CEEEEecCCCHHHHHH--HHhhc-cCCCEEEECCCccCcCCHHHHHHHHHHHhc----CCCEEEEcCCCCCHH
Confidence            5789999999998876  22221 2346799999999999763 3333343332    345899999999743

PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina

>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain

Probab=98.25  E-value=1.1e-05  Score=70.55  Aligned_cols=107  Identities=19%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             eEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchh
Q 008730          296 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG  375 (556)
Q Consensus       296 ~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~  375 (556)
                      .||||.||..+.+.++....   ..-+.++++||+.      .+++..+..++   +..++.++||||            
T Consensus         1 ~viSDtH~~~~~~~~~~~~~---~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D------------   56 (129)
T cd07403           1 LVISDTESPALYSPEIKVRL---EGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD------------   56 (129)
T ss_pred             CeeccccCccccchHHHhhC---CCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc------------
Confidence            38999999988777776642   2346799999984      34555655542   224889999999            


Q ss_pred             hHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCc
Q 008730          376 EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGP  455 (556)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~  455 (556)
                                                  -+++++|+-. .+..                         +.+         
T Consensus        57 ----------------------------~~Ilv~H~pp-~~~~-------------------------~~~---------   73 (129)
T cd07403          57 ----------------------------VDILLTHAPP-AGIG-------------------------DGE---------   73 (129)
T ss_pred             ----------------------------cCEEEECCCC-CcCc-------------------------Ccc---------
Confidence                                        3789999732 1000                         000         


Q ss_pred             CCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCce
Q 008730          456 SKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE  493 (556)
Q Consensus       456 ~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~  493 (556)
                        +  ...-|.+.+.+++++.+.++++-||.-....+.
T Consensus        74 --~--~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~  107 (129)
T cd07403          74 --D--FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ  107 (129)
T ss_pred             --c--ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence              0  012356788889999999999999998777665

TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.24  E-value=2.7e-05  Score=81.99  Aligned_cols=120  Identities=10%  Similarity=-0.019  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      .+.|+.-+.....+++.++|+..++++++..|.....|..+|+++.++++.+.|.+.|...++..|..+..|..++.+-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            45666777777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK  133 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~  133 (556)
                      ..|+.-.|...++++...+|++...|...-++..+.|..+
T Consensus       731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence            9999999999999999999999998888877777777754

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase

Probab=98.23  E-value=7e-06  Score=79.45  Aligned_cols=201  Identities=13%  Similarity=0.149  Sum_probs=98.5

Q ss_pred             ceEeccCCCCH------HHHHHHHHhcCCCCCCCCeeeecccccCC-----CC--hHHHHHHHHhccccCCCeEEEeccc
Q 008730          295 FTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRG-----SF--SVEVILTLFAFKCMCPSAIYLSRGN  361 (556)
Q Consensus       295 i~vigDiHG~~------~~l~~~l~~~~~~~~~~~~vflGD~vdrG-----~~--s~e~l~~l~~lk~~~p~~v~~lrGN  361 (556)
                      +++|+|+|...      ..+.+.+.....  ..+.+|++||++|..     +.  ..++...+..++.. +..|+++.||
T Consensus         1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GN   77 (231)
T TIGR01854         1 TLFISDLHLSPERPDITALFLDFLREEAR--KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGN   77 (231)
T ss_pred             CeEEEecCCCCCChhHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCC
Confidence            36899999543      234444443211  345799999999952     11  23455666666432 4579999999


Q ss_pred             ccccccccccCchhhHHhhhhHHHHHHHHHHhcccccc--cc-cCCeEEEEecccccCCCCChhhhhhcccCC-------
Q 008730          362 HESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLA--HV-LNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-------  431 (556)
Q Consensus       362 HE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~--~~-i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-------  431 (556)
                      ||...-.               .+.+...  +..+|-.  .. -+.+++++||-..........-.+++-|..       
T Consensus        78 HD~~~~~---------------~~~~~~g--i~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~  140 (231)
T TIGR01854        78 RDFLIGK---------------RFAREAG--MTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFL  140 (231)
T ss_pred             CchhhhH---------------HHHHHCC--CEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHH
Confidence            9964210               0111000  1122222  12 256899999965221111111122221110       


Q ss_pred             -CCCC-ccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCC
Q 008730          432 -EPPE-EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNY  509 (556)
Q Consensus       432 -~~~~-~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y  509 (556)
                       -++. ...+...+|+.+.......  + -.-....+..+.+.++..+++++|-||.-.+.-+.+..++.-++-++-++.
T Consensus       141 ~l~~~~r~~l~~~~~~~s~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW  217 (231)
T TIGR01854       141 HLPLAVRVKLARKIRAESRADKQMK--S-QDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDW  217 (231)
T ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCC--c-chhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCC
Confidence             0000 1112223333211110000  0 011234567788889999999999999975544443334333344444444


Q ss_pred             CCCCCCeEEEEEE
Q 008730          510 CDQMGNKGAFIRF  522 (556)
Q Consensus       510 ~~~~~n~~a~~~~  522 (556)
                      .    ..+.++.+
T Consensus       218 ~----~~~~~~~~  226 (231)
T TIGR01854       218 Y----RQGSILRV  226 (231)
T ss_pred             c----cCCeEEEE
Confidence            2    23566666

This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.23  E-value=1.4e-05  Score=68.30  Aligned_cols=91  Identities=15%  Similarity=0.129  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKV  122 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l  122 (556)
                      .+++.+|.++-.+|+.++|+..|++++....+.   ..+++.+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578899999999999999999999999975543   679999999999999999999999999999898   77778888


Q ss_pred             HHHHHHHhhhhHHHHhcCC
Q 008730          123 KECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus       123 ~~~~~~~~~~~~~~Ai~~~  141 (556)
                      +.++...|+  .++|++..
T Consensus        82 Al~L~~~gr--~~eAl~~~   98 (120)
T PF12688_consen   82 ALALYNLGR--PKEALEWL   98 (120)
T ss_pred             HHHHHHCCC--HHHHHHHH
Confidence            888888887  56665543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.22  E-value=4.2e-06  Score=91.55  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...|..+|..|.+.+++.+|+..|+.|++.+|.+..+|..+|.+|.+.|+|.-|++.|.+|..++|.+..+.|..|.+..
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      .+|+|.+|+..+...+........+...++.++.+..
T Consensus       642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a  678 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA  678 (1238)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9999999999999999887776667777776665543

>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain

Probab=98.22  E-value=5.5e-05  Score=72.25  Aligned_cols=194  Identities=16%  Similarity=0.152  Sum_probs=100.4

Q ss_pred             cceEeccCCCC----HHHHH----HHHHhcCCCCCCCCeeeecccccCCCChH--H-HHHHHHhccccCCCeEEEecccc
Q 008730          294 HFTVCGDVHGQ----FYDLL----NIFELNGLPSEENPYLFNGDFVDRGSFSV--E-VILTLFAFKCMCPSAIYLSRGNH  362 (556)
Q Consensus       294 ~i~vigDiHG~----~~~l~----~~l~~~~~~~~~~~~vflGD~vdrG~~s~--e-~l~~l~~lk~~~p~~v~~lrGNH  362 (556)
                      +++++||+|--    ...+.    .+.+...-. .-+.+|++||++|.|....  + ....+..|. ..+--++.++|||
T Consensus         2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~~p~~~~~GNH   79 (214)
T cd07399           2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLD-KAGIPYSVLAGNH   79 (214)
T ss_pred             EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHH-HcCCcEEEECCCC
Confidence            48899999942    22232    233333222 2356999999999998432  1 222222232 1223478899999


Q ss_pred             cccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhh
Q 008730          363 ESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCEL  442 (556)
Q Consensus       363 E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~l  442 (556)
                      |... ...+.        ...+..+.+.+.++..|-    ..-++++|-=+ .+...         +         ....
T Consensus        80 D~~~-~ld~~--------~~~~ql~WL~~~L~~~~~----~~~iv~~H~p~-~~~~~---------~---------~~~~  127 (214)
T cd07399          80 DLVL-ALEFG--------PRDEVLQWANEVLKKHPD----RPAILTTHAYL-NCDDS---------R---------PDSI  127 (214)
T ss_pred             cchh-hCCCC--------CCHHHHHHHHHHHHHCCC----CCEEEEecccc-cCCCC---------c---------Cccc
Confidence            9421 11111        123334445555554331    23578888633 11000         0         0000


Q ss_pred             hcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHC-CCCEEEeeccccccCceEe-----cCCeEEEEecCCCCCCCCCCe
Q 008730          443 LWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLDLVVRSHEVKDEGYEIE-----HDGKLITVFSAPNYCDQMGNK  516 (556)
Q Consensus       443 lw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~-~~~~iir~H~~~~~G~~~~-----~~~~~itvfSa~~y~~~~~n~  516 (556)
                      .|.+              +..-|...+.+.++++ ++++++-||.-. .+....     .++.|..+.+........+|-
T Consensus       128 ~~~~--------------~~~~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~  192 (214)
T cd07399         128 DYDS--------------DVNDGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNG  192 (214)
T ss_pred             cccc--------------ccccHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcc
Confidence            1110              1124556788889988 799999999763 333332     144566665544332222322


Q ss_pred             E-EEEEEecCCCceeEEEEec
Q 008730          517 G-AFIRFEAPTLKPNIVTFAA  536 (556)
Q Consensus       517 ~-a~~~~~~~~~~~~~~~~~~  536 (556)
                      . .++.|+..+.++.+.+|.+
T Consensus       193 ~~r~~~f~~~~~~i~~~tysp  213 (214)
T cd07399         193 FLRLLEFDPDNNKIDVRTYSP  213 (214)
T ss_pred             eEEEEEEecCCCEEEEEeCCC
Confidence            1 4677744446777777743

YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.21  E-value=1.9e-05  Score=88.51  Aligned_cols=116  Identities=13%  Similarity=0.096  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------------
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------   77 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------   77 (556)
                      .+-.+++.+|.+|-+.|++++|...|+++++.+|+++.+++++|..|... +.++|+..+.+|++.              
T Consensus       114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W  192 (906)
T PRK14720        114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW  192 (906)
T ss_pred             hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            33468999999999999999999999999999999999999999999999 999999999999865              


Q ss_pred             ------CCCChHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           78 ------DPRYPKG--------------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        78 ------~p~~~~~--------------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                            +|++...                    +.-+=.+|...++|++++..++.+|+++|+|..+...++.++..
T Consensus       193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence                  4444332                    22233778888999999999999999999999999999999873

>COG0622 Predicted phosphoesterase [General function prediction only]

Probab=98.19  E-value=4.3e-05  Score=69.65  Aligned_cols=160  Identities=19%  Similarity=0.257  Sum_probs=101.1

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      ++|.|+||.||...+..+..+..... .-+.+|.+||++..+..     ..+-.   ....+++.++||.|.....    
T Consensus         2 m~ilviSDtH~~~~~~~~~~~~~~~~-~~d~vih~GD~~~~~~~-----~~l~~---~~~~~i~~V~GN~D~~~~~----   68 (172)
T COG0622           2 MKILVISDTHGPLRAIEKALKIFNLE-KVDAVIHAGDSTSPFTL-----DALEG---GLAAKLIAVRGNCDGEVDQ----   68 (172)
T ss_pred             cEEEEEeccCCChhhhhHHHHHhhhc-CCCEEEECCCcCCccch-----HHhhc---ccccceEEEEccCCCcccc----
Confidence            46999999999997555554443333 45679999999965432     22211   0236899999999975432    


Q ss_pred             chhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC
Q 008730          373 FEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP  449 (556)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~  449 (556)
                                           ..+|....+   +-+++++||....+                                 
T Consensus        69 ---------------------~~~p~~~~~~~~g~ki~l~HGh~~~~---------------------------------   94 (172)
T COG0622          69 ---------------------EELPEELVLEVGGVKIFLTHGHLYFV---------------------------------   94 (172)
T ss_pred             ---------------------ccCChhHeEEECCEEEEEECCCcccc---------------------------------
Confidence                                 234444333   46899999965110                                 


Q ss_pred             CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEe--cCCCCCCCCCCeEEEEEEecCCC
Q 008730          450 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVF--SAPNYCDQMGNKGAFIRFEAPTL  527 (556)
Q Consensus       450 ~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvf--Sa~~y~~~~~n~~a~~~~~~~~~  527 (556)
                                   ......+..+-+..+.+.+|.||+-.+ .++. .++ ++-|-  |.+.+-  .++..+++.++.++.
T Consensus        95 -------------~~~~~~l~~la~~~~~Dvli~GHTH~p-~~~~-~~~-i~~vNPGS~s~pr--~~~~~sy~il~~~~~  156 (172)
T COG0622          95 -------------KTDLSLLEYLAKELGADVLIFGHTHKP-VAEK-VGG-ILLVNPGSVSGPR--GGNPASYAILDVDNL  156 (172)
T ss_pred             -------------ccCHHHHHHHHHhcCCCEEEECCCCcc-cEEE-ECC-EEEEcCCCcCCCC--CCCCcEEEEEEcCCC
Confidence                         122557777888889999999999853 3322 222 22222  444443  346667888867778


Q ss_pred             ceeEEEEecC
Q 008730          528 KPNIVTFAAV  537 (556)
Q Consensus       528 ~~~~~~~~~~  537 (556)
                      ++.+..++..
T Consensus       157 ~~~~~~~~~~  166 (172)
T COG0622         157 EVEVLFLERD  166 (172)
T ss_pred             EEEEEEeecc
Confidence            8887777553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.16  E-value=1e-06  Score=86.08  Aligned_cols=104  Identities=38%  Similarity=0.539  Sum_probs=96.6

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      -+.+......+..++..|++++|++.|..+++++|..+..+..++.++.++++...|+..|..|+.++|+....|-.+|.
T Consensus       111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~  190 (377)
T KOG1308|consen  111 MDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGY  190 (377)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhH
Confidence            34455566678888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      +...+|++++|..++..+.+++-+
T Consensus       191 A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  191 AERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             HHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999744

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.16  E-value=1.3e-05  Score=78.63  Aligned_cols=93  Identities=26%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 008730           48 AVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQ  120 (556)
Q Consensus        48 ~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~  120 (556)
                      ...++..|..+ .+.|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|+++++..|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46678888876 56799999999999999999998   5799999999999999999999999999998875   67888


Q ss_pred             HHHHHHHHHhhhhHHHHhcCCC
Q 008730          121 KVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       121 ~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++.++..+++  .++|...++
T Consensus       222 klg~~~~~~g~--~~~A~~~~~  241 (263)
T PRK10803        222 KVGVIMQDKGD--TAKAKAVYQ  241 (263)
T ss_pred             HHHHHHHHcCC--HHHHHHHHH
Confidence            88999888776  667766654

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain

Probab=98.15  E-value=3e-05  Score=69.04  Aligned_cols=118  Identities=19%  Similarity=0.154  Sum_probs=72.8

Q ss_pred             ceEeccCCCCHH------H----HHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCCCeEEEecccc
Q 008730          295 FTVCGDVHGQFY------D----LLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNH  362 (556)
Q Consensus       295 i~vigDiHG~~~------~----l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p~~v~~lrGNH  362 (556)
                      |+.++|+|=...      .    |.++++...-. ..+.++++||+++.|...  .+...++..+.... ..+++++|||
T Consensus         1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNH   78 (144)
T cd07400           1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKAL-DPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNH   78 (144)
T ss_pred             CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhcc-CCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCC
Confidence            467899993211      1    11233333222 345799999999998742  23334454444221 3799999999


Q ss_pred             cccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhh
Q 008730          363 ESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCEL  442 (556)
Q Consensus       363 E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~l  442 (556)
                      |.                                         ++++|..+ .+...                       
T Consensus        79 D~-----------------------------------------iv~~Hhp~-~~~~~-----------------------   93 (144)
T cd07400          79 DV-----------------------------------------IVVLHHPL-VPPPG-----------------------   93 (144)
T ss_pred             eE-----------------------------------------EEEecCCC-CCCCc-----------------------
Confidence            98                                         88899755 21100                       


Q ss_pred             hcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE
Q 008730          443 LWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI  494 (556)
Q Consensus       443 lw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~  494 (556)
                      -|.+         ..     . +.+.+.+++++.++++++-||.-....+.+
T Consensus        94 ~~~~---------~~-----~-~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~  130 (144)
T cd07400          94 SGRE---------RL-----L-DAGDALKLLAEAGVDLVLHGHKHVPYVGNI  130 (144)
T ss_pred             cccc---------cC-----C-CHHHHHHHHHHcCCCEEEECCCCCcCeeec
Confidence            0000         00     1 566788899999999999999987655543

YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.10  E-value=0.00015  Score=77.76  Aligned_cols=184  Identities=15%  Similarity=0.081  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...++-+|+.|...|++++|+++.++||+..|..++.+...|.++-+.|++.+|.++++.|-.+|+.+-..-...+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999888888888999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--C-----HHHHHH--HHHHHHHHhhhhHHHHhcCCCCCcc----ccccccccccccCC
Q 008730           94 AMGKFKEALKDFQQVKKLSPN--D-----PDAAQK--VKECEKAVKKLKFEEAIAVPESERH----SVADSIDYQSIGMS  160 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~--~-----~~~~~~--l~~~~~~~~~~~~~~Ai~~~~~~~~----~~~~~~~~~~l~~~  160 (556)
                      +.|+.++|.+.+..-.+-+-+  .     .-.|+.  .|.++.+.|.  +..|+..+.....    ...+.+|...    
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~--~~~ALk~~~~v~k~f~~~~~DQfDFH~----  347 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD--YGLALKRFHAVLKHFDDFEEDQFDFHS----  347 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhcccccHHH----
Confidence            999999999998866554421  1     123443  3455555554  5666654432211    1112222221    


Q ss_pred             CCCccchhHHHHHHhhhhhhhHhhhcccHHHHHHHHhHHHHHHHHHh
Q 008730          161 PSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILG  207 (556)
Q Consensus       161 p~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~l~~~~~~~l~  207 (556)
                          .-..+-...+-..++.+...+.+.|....+..+.+......-+
T Consensus       348 ----Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d  390 (517)
T PF12569_consen  348 ----YCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHD  390 (517)
T ss_pred             ----HHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence                1111222334456778888999999999988888777666544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.10  E-value=0.0002  Score=67.75  Aligned_cols=124  Identities=21%  Similarity=0.214  Sum_probs=98.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh-----------CHHHHHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLE-----------EYGSAIQDASKAI   75 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g-----------~~~~A~~~~~~al   75 (556)
                      ++-..++.+.+|.++++.|+|++|+..|++.++..|+++   .+++.+|.+++.+.           ...+|+..|+..+
T Consensus        38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            455678899999999999999999999999999999874   68899999877654           3458999999999


Q ss_pred             HhCCCChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhh
Q 008730           76 EIDPRYPK-----------------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLK  133 (556)
Q Consensus        76 ~l~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~  133 (556)
                      ...|++..                 --+..|..|.+.|.+..|+.-++.+++..|+.+   +++..+..++..+|...
T Consensus       118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            99998742                 345578888999999999999999999999875   45667777788877643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.04  E-value=5.7e-05  Score=79.57  Aligned_cols=121  Identities=18%  Similarity=0.131  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---------------------------------HHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---------------------------------ANRAFA   57 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~---------------------------------~~lg~~   57 (556)
                      |.....|...+..+...|+..+|...+.+|++.+|++-+.|                                 +.-+..
T Consensus       581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~  660 (913)
T KOG0495|consen  581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANL  660 (913)
T ss_pred             CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHH
Confidence            33344455566666666666666666666666666655544                                 444444


Q ss_pred             HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        58 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ...+++.++|++.++++++..|+....|+.+|+++.++++.+.|.+.|...++..|.....|..++.+....++
T Consensus       661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence            44555666666666666666666666666666666666666666666666666666666666666666555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.03  E-value=0.00036  Score=67.93  Aligned_cols=122  Identities=15%  Similarity=0.134  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh------------------CHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE------------------EYGSAIQ   69 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g------------------~~~~A~~   69 (556)
                      +....+.+.+|.++++.++|++|+..|++.++.+|++   +.+++.+|.++..++                  .-.+|+.
T Consensus        66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            4555678999999999999999999999999999887   567899998875554                  1357899


Q ss_pred             HHHHHHHhCCCChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 008730           70 DASKAIEIDPRYPK-----------------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAV  129 (556)
Q Consensus        70 ~~~~al~l~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~  129 (556)
                      .+++.++..|+...                 --+..|.-|.+.|.|..|+.-++.+++..|+.   .+++..+..++..+
T Consensus       146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l  225 (243)
T PRK10866        146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL  225 (243)
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence            99999999998632                 23456777899999999999999999998876   46677777888877


Q ss_pred             hhh
Q 008730          130 KKL  132 (556)
Q Consensus       130 ~~~  132 (556)
                      |..
T Consensus       226 g~~  228 (243)
T PRK10866        226 QLN  228 (243)
T ss_pred             CCh
Confidence            764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.02  E-value=0.00015  Score=77.72  Aligned_cols=50  Identities=16%  Similarity=0.164  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      ++++.+|..|...|++++|++++++|++..|..++.+...|+++...|+.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence            45677777777888888888888888888888888887788777777773

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.98  E-value=9.3e-06  Score=79.25  Aligned_cols=82  Identities=23%  Similarity=0.214  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      .-..|..|+++|+|++|+++|.+++.++|.|+..+.++|.+|+++.++..|...++.|+.++.....+|...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             hh
Q 008730          131 KL  132 (556)
Q Consensus       131 ~~  132 (556)
                      +.
T Consensus       180 ~~  181 (536)
T KOG4648|consen  180 NN  181 (536)
T ss_pred             hH
Confidence            74

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.96  E-value=1.6e-05  Score=55.11  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      +..+|.+|..+|++++|++.|+++++.+|+++.++..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            33344444444444444444444444444444444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.95  E-value=5.7e-05  Score=69.54  Aligned_cols=74  Identities=20%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   82 (556)
                      -.|+.+..++.+|..+...|+|+.|.+.|+..+++||....+..|+|..++--|+|+-|.+.+.+--+.||++|
T Consensus        94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            46788899999999999999999999999999999999999999999999999999999999999988888765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.94  E-value=2.3e-05  Score=54.30  Aligned_cols=43  Identities=26%  Similarity=0.471  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  124 (556)
                      |.+++.+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4689999999999999999999999999999999999998875

>PRK11340 phosphodiesterase YaeI; Provisional

Probab=97.93  E-value=1.8e-05  Score=78.52  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=50.7

Q ss_pred             CCcceEeccCCCC----HHHHHHHHHhcCCCCCCCCeeeecccccCC--CChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          292 GKHFTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFVDRG--SFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       292 ~~~i~vigDiHG~----~~~l~~~l~~~~~~~~~~~~vflGD~vdrG--~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      +.+|++++|+|..    ...+.++++...-. ..|.+++.||++|++  ....++...+..++...  .++.+.||||..
T Consensus        49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~-~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~  125 (271)
T PRK11340         49 PFKILFLADLHYSRFVPLSLISDAIALGIEQ-KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP  125 (271)
T ss_pred             CcEEEEEcccCCCCcCCHHHHHHHHHHHHhc-CCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence            4689999999976    45567777665433 345799999999954  23345666676676434  499999999974

>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain

Probab=97.91  E-value=0.00046  Score=68.12  Aligned_cols=70  Identities=14%  Similarity=0.025  Sum_probs=43.5

Q ss_pred             cceEeccCCCCH----------------HHHHHHHHhcC-CCCCCCCeeeecccccCCCChH-------HHHHHHHhccc
Q 008730          294 HFTVCGDVHGQF----------------YDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSV-------EVILTLFAFKC  349 (556)
Q Consensus       294 ~i~vigDiHG~~----------------~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~-------e~l~~l~~lk~  349 (556)
                      +++++||+|--.                ..|.++++.+. ..+..+.+|++||+++.|....       +....+..+  
T Consensus         6 ~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~--   83 (262)
T cd07395           6 YFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLL--   83 (262)
T ss_pred             EEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhc--
Confidence            478889998553                23455555543 2234457999999999887541       122222222  


Q ss_pred             cCCCeEEEeccccccc
Q 008730          350 MCPSAIYLSRGNHESK  365 (556)
Q Consensus       350 ~~p~~v~~lrGNHE~~  365 (556)
                      ..+-.++.++||||..
T Consensus        84 ~~~vp~~~i~GNHD~~   99 (262)
T cd07395          84 DPDIPLVCVCGNHDVG   99 (262)
T ss_pred             cCCCcEEEeCCCCCCC
Confidence            1234699999999974

CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.00026  Score=69.64  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--------------HhCC---
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI--------------EIDP---   79 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--------------~l~p---   79 (556)
                      -.-+|.+++..|+|++|+..|+-+.+.+.-+++.+.++|.|+.-+|.|.+|.....++-              +++.   
T Consensus        60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence            34578899999999999999999999887788999999999999999999977766552              1111   


Q ss_pred             ---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           80 ---------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        80 ---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                               +..+-...+|.+++..-.|++|++.|.+.+.-+|+....-.+++.|+.++.-.
T Consensus       140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence                     12234455666777777889999999999999888887778888888877654

>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain

Probab=97.90  E-value=0.00023  Score=67.19  Aligned_cols=70  Identities=11%  Similarity=0.045  Sum_probs=42.4

Q ss_pred             CcceEeccCCCCHH-----------HHHHHHHh-cCCCCCCCCeeeecccccCCCCh---HHHHHHHHhccccCCCeEEE
Q 008730          293 KHFTVCGDVHGQFY-----------DLLNIFEL-NGLPSEENPYLFNGDFVDRGSFS---VEVILTLFAFKCMCPSAIYL  357 (556)
Q Consensus       293 ~~i~vigDiHG~~~-----------~l~~~l~~-~~~~~~~~~~vflGD~vdrG~~s---~e~l~~l~~lk~~~p~~v~~  357 (556)
                      .++.+++|+|-...           ...+.++. +... ..+.+|++||+++.+...   .+.+..++.......-.+++
T Consensus         3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~   81 (199)
T cd07383           3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAE-KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAA   81 (199)
T ss_pred             eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhc-CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEE
Confidence            36899999995221           11222222 2111 335699999999977653   55555544433323356889


Q ss_pred             eccccc
Q 008730          358 SRGNHE  363 (556)
Q Consensus       358 lrGNHE  363 (556)
                      +.||||
T Consensus        82 ~~GNHD   87 (199)
T cd07383          82 TFGNHD   87 (199)
T ss_pred             ECccCC
Confidence            999999

DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.89  E-value=1.3e-05  Score=52.14  Aligned_cols=32  Identities=34%  Similarity=0.634  Sum_probs=18.3

Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730           71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        71 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      |++|++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45555555555555555555555555555554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.87  E-value=8.8e-07  Score=90.49  Aligned_cols=245  Identities=13%  Similarity=-0.003  Sum_probs=164.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHH
Q 008730          262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI  341 (556)
Q Consensus       262 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l  341 (556)
                      +.......+++.+.+++..+|+...+..-+.--.++++|.||.+.|+.+.++.-  |....-|++-|++++++....+.+
T Consensus        15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHH
Confidence            555667778888999999999988877655556899999999999999999853  444556999999999999999999


Q ss_pred             HHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH---HHHHHHHHHhcccc-cccccCCeEEEEecccc---
Q 008730          342 LTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFAEVFCCLP-LAHVLNQKVFVVHGGLF---  414 (556)
Q Consensus       342 ~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~lP-~~~~i~~~~~~vHgGi~---  414 (556)
                      ..+...+...|+...+.|++||+..+...++|..+....++.   .+...+.  +..++ +....++.++ -|.-++   
T Consensus        93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~--~~~~~~i~~~y~g~~l-e~~kvt~e~  169 (476)
T KOG0376|consen   93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKID--EEDMDLIESDYSGPVL-EDHKVTLEF  169 (476)
T ss_pred             HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccc--cccccccccccCCccc-ccchhhHHH
Confidence            999999999999999999999999998888888776666532   1111111  11111 3333332222 121110   


Q ss_pred             ---------------cCCCCC-hhhhhhcccCCCCC-CccchhhhhcCCCCCCCC-CCcCCCCCccccCHHHHHHHHHHC
Q 008730          415 ---------------SVDGVK-LSDIKTIDRFCEPP-EEGLMCELLWSDPQPLPG-RGPSKRGVGLSFGADVTKRFLQDN  476 (556)
Q Consensus       415 ---------------~~~~~~-~~~i~~~~r~~~~~-~~~~~~~llw~dp~~~~~-~~~~~rg~g~~fg~~~~~~fl~~~  476 (556)
                                     +....+ ++....+.+...++ +.....+..|++|....| +.+..++.+...++..+..|+.+.
T Consensus       170 vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfng  249 (476)
T KOG0376|consen  170 VKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNG  249 (476)
T ss_pred             HHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccC
Confidence                           000000 11111111111111 111445678888877654 566677888888899999999999


Q ss_pred             CCCEEEeecccc------------ccCceEecC---CeEEEEecCCCCCC
Q 008730          477 SLDLVVRSHEVK------------DEGYEIEHD---GKLITVFSAPNYCD  511 (556)
Q Consensus       477 ~~~~iir~H~~~------------~~G~~~~~~---~~~itvfSa~~y~~  511 (556)
                      ++.-+++.|.-+            ..+|...++   +..+++|+++.+|-
T Consensus       250 dfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~  299 (476)
T KOG0376|consen  250 DFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK  299 (476)
T ss_pred             ceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence            998888888742            333333332   35899999998873

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.84  E-value=1.6e-05  Score=51.60  Aligned_cols=34  Identities=41%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH
Q 008730           36 LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ   69 (556)
Q Consensus        36 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~   69 (556)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999963

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.00012  Score=66.53  Aligned_cols=74  Identities=31%  Similarity=0.363  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      ...+-.|.+.|.+..+.+.++.|+..+.+|++++|.+..++..+|.+|.++..|++|+.+|.+.++.+|..-.+
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            34455678899999999999999999999999999999999999999999999999999999999999986544

>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain

Probab=97.84  E-value=2.7e-05  Score=74.91  Aligned_cols=71  Identities=23%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             CcceEeccCCCCHH----HHHHHHHhcCCCCCCCCeeeecccccCCCChH-HHHHHHHhccccCCCeEEEecccccccc
Q 008730          293 KHFTVCGDVHGQFY----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-EVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       293 ~~i~vigDiHG~~~----~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      .+|.+++|+|+...    .+.++++.+... ..+.+++.||++|.+.... ++..++..+.  .+..++.+.||||...
T Consensus         2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD~~~   77 (223)
T cd07385           2 LRIAHLSDLHLGPFVSRERLERLVEKINAL-KPDLVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHDYYS   77 (223)
T ss_pred             CEEEEEeecCCCccCCHHHHHHHHHHHhcc-CCCEEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCccccc
Confidence            46999999998643    566666655433 2457999999999988765 5555555553  3456999999999853

YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.82  E-value=0.00015  Score=65.26  Aligned_cols=75  Identities=19%  Similarity=0.176  Sum_probs=59.3

Q ss_pred             CChhHHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHHH
Q 008730            9 SSVSRAEELKALANEAFRAK----------KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGSA   67 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g----------~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-----------~~~A   67 (556)
                      .+|.+++++.+-|.+++...          -+++|+.-|++||.++|+..+++.++|.+|..++.           |++|
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            46788899999888887654          45778999999999999999999999999998764           7889


Q ss_pred             HHHHHHHHHhCCCChH
Q 008730           68 IQDASKAIEIDPRYPK   83 (556)
Q Consensus        68 ~~~~~~al~l~p~~~~   83 (556)
                      ..+|++|...+|++..
T Consensus       100 ~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHhcCCCcHH
Confidence            9999999999998754

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=0.00013  Score=72.92  Aligned_cols=120  Identities=16%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      +.+...-.-.++++.++++.|.+.+++.-+.+.+..-.....|-+.+..|  ++.+|...|+...+..+.++..+..+|.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            45556667788899999999999999988877665433333333334444  5999999999988887889999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      ++..+|+|++|.+.+++|+..+|++++++.++..+...+|+.
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999988888773

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.00011  Score=70.71  Aligned_cols=132  Identities=19%  Similarity=0.237  Sum_probs=108.6

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----------Hh
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----------EI   77 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----------~l   77 (556)
                      +..|.+-..+..+|.+|+...+|..|.++|++.-.+.|.........+..+++.+.+.+|+.......          ++
T Consensus        38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL  117 (459)
T KOG4340|consen   38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL  117 (459)
T ss_pred             hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34555667788899999999999999999999999999999998899999999999888876554332          11


Q ss_pred             --------------------CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHH
Q 008730           78 --------------------DP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFE  135 (556)
Q Consensus        78 --------------------~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~  135 (556)
                                          -|  +......+.|-+.++.|++++|.+-|+.|++...-++-..++++.+..+.++  ++
T Consensus       118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q--ya  195 (459)
T KOG4340|consen  118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ--YA  195 (459)
T ss_pred             HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh--HH
Confidence                                23  3567888899999999999999999999999999999999999999888776  67


Q ss_pred             HHhcCC
Q 008730          136 EAIAVP  141 (556)
Q Consensus       136 ~Ai~~~  141 (556)
                      .|+++.
T Consensus       196 sALk~i  201 (459)
T KOG4340|consen  196 SALKHI  201 (459)
T ss_pred             HHHHHH
Confidence            776543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.79  E-value=0.00025  Score=68.26  Aligned_cols=82  Identities=28%  Similarity=0.341  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKE  124 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~  124 (556)
                      .++.|.-+++.|+|.+|.+.|..-++..|+.   +.++|.||.+++.+|++++|...|..+.+-.|++   ++++..++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999985   7899999999999999999999999999998766   678999999


Q ss_pred             HHHHHhhh
Q 008730          125 CEKAVKKL  132 (556)
Q Consensus       125 ~~~~~~~~  132 (556)
                      +...+++.
T Consensus       224 ~~~~l~~~  231 (262)
T COG1729         224 SLGRLGNT  231 (262)
T ss_pred             HHHHhcCH
Confidence            99999885

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.79  E-value=0.0001  Score=62.40  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP----DAAQKVKECE  126 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~  126 (556)
                      +...|.++.+.|+.+.|++.|.+++.+-|..+.+|.+++.++.-+|+.++|+..+++|+++..+..    .++...+.++
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999975543    3556677778


Q ss_pred             HHHhhh
Q 008730          127 KAVKKL  132 (556)
Q Consensus       127 ~~~~~~  132 (556)
                      ..+|+.
T Consensus       126 Rl~g~d  131 (175)
T KOG4555|consen  126 RLLGND  131 (175)
T ss_pred             HHhCch
Confidence            777763

>PRK04036 DNA polymerase II small subunit; Validated

Probab=97.77  E-value=0.0005  Score=74.06  Aligned_cols=74  Identities=23%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             CCcceEeccCC-CCH----HHHHHHHHhc-CC-------CCCCCCeeeecccccC-CCCh---------------HHHHH
Q 008730          292 GKHFTVCGDVH-GQF----YDLLNIFELN-GL-------PSEENPYLFNGDFVDR-GSFS---------------VEVIL  342 (556)
Q Consensus       292 ~~~i~vigDiH-G~~----~~l~~~l~~~-~~-------~~~~~~~vflGD~vdr-G~~s---------------~e~l~  342 (556)
                      ..++++|+|+| |.-    ..+..+++.+ |.       ...-+.+|++||++|. |+..               .++..
T Consensus       243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~  322 (504)
T PRK04036        243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE  322 (504)
T ss_pred             ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence            35799999999 653    2233333332 22       1223579999999995 3221               13445


Q ss_pred             HHHhccccCCCeEEEeccccccccc
Q 008730          343 TLFAFKCMCPSAIYLSRGNHESKSM  367 (556)
Q Consensus       343 ~l~~lk~~~p~~v~~lrGNHE~~~~  367 (556)
                      +|..+.  ..-.|++++||||....
T Consensus       323 ~L~~L~--~~i~V~~ipGNHD~~~~  345 (504)
T PRK04036        323 YLKQIP--EDIKIIISPGNHDAVRQ  345 (504)
T ss_pred             HHHhhh--cCCeEEEecCCCcchhh
Confidence            555553  23479999999997553

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.77  E-value=8e-05  Score=74.41  Aligned_cols=128  Identities=24%  Similarity=0.262  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CC--
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RY--   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~--   81 (556)
                      ..+..+..-|+.|...|+|++|.++|.++.+..-.      -+.++...+.+|.+. ++++|+.+|++|+.+.-  .+  
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            34667778899999999999999999999887521      145567777777655 99999999999998732  22  


Q ss_pred             --hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 --PKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSPN--D----PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 --~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~--~----~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                        ..++..+|.+|... |++++|+++|++|+++...  .    ...+..++.++..+++  |++|++.++
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~--y~~A~~~~e  179 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR--YEEAIEIYE  179 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence              56899999999999 9999999999999998432  2    2355677777777775  899988876

>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []

Probab=97.73  E-value=0.00028  Score=74.87  Aligned_cols=52  Identities=21%  Similarity=0.342  Sum_probs=40.3

Q ss_pred             HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730          307 DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  367 (556)
Q Consensus       307 ~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~  367 (556)
                      .|..+++++-    .|++-.+||+.||||.+-.+++.|+..     .+|-+-.||||--.|
T Consensus       175 al~~lIqrL~----VDhLHIvGDIyDRGp~pd~ImD~Lm~~-----hsvDIQWGNHDIlWM  226 (640)
T PF06874_consen  175 ALSELIQRLA----VDHLHIVGDIYDRGPRPDKIMDRLMNY-----HSVDIQWGNHDILWM  226 (640)
T ss_pred             HHHHHHHHHh----hhheeecccccCCCCChhHHHHHHhcC-----CCccccccchHHHHH
Confidence            3445555543    457999999999999999999999866     477888999995433

This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.71  E-value=6.4e-05  Score=48.76  Aligned_cols=29  Identities=34%  Similarity=0.528  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDP   79 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p   79 (556)
                      |+++|.+|..+|++++|+.+|++|++++|
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            33444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=6.9e-05  Score=48.58  Aligned_cols=34  Identities=35%  Similarity=0.819  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      +.+|+++|.+|..+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.68  E-value=0.0013  Score=58.64  Aligned_cols=99  Identities=26%  Similarity=0.280  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYGSAIQD   70 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~a~~~lg~~~~~~g~~~~A~~~   70 (556)
                      ....+...|......++.+.++..+++++.+....                      ..+...++..+...|++++|+..
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            34556666778888999999999999999985331                      23455677788889999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        71 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      +++++..+|.+-.+|..+-.+|...|+..+|++.|+++.+.
T Consensus        85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.00043  Score=68.21  Aligned_cols=106  Identities=14%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 008730           22 NEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE  100 (556)
Q Consensus        22 ~~~~~~g~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~  100 (556)
                      ..+....||..|+..++-.+..+.+.. ..-..+|.|++++|+|++|+..|+.+.+.+..+.+.+.++|.|++.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            456788999999999998887775543 5666789999999999999999999999887789999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730          101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus       101 A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      |...-.+|    |+++-....+-.+..++++
T Consensus       110 A~~~~~ka----~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen  110 AKSIAEKA----PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence            98766554    6666655555555545544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.66  E-value=7e-05  Score=74.92  Aligned_cols=126  Identities=16%  Similarity=0.229  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCC--C
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPR--Y   81 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~--~   81 (556)
                      -+++-++|+.|+-.|+|++|+..-+.-+++..+      .-.++.++|.|+.-+|+++.|+++|++++.+    ...  .
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            356778899999999999999998888877543      2467899999999999999999999998754    222  2


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      ....|.+|..|.-+.++++||.+.++-|.+..+      ...+...++.++..++.  -++|+...
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~--h~kAl~fa  338 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE--HRKALYFA  338 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--HHHHHHHH
Confidence            456788999999999999999999998887532      34567777888887777  35554443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.64  E-value=0.00013  Score=47.17  Aligned_cols=32  Identities=34%  Similarity=0.781  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      ++++.+|.++..+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.64  E-value=0.0035  Score=59.94  Aligned_cols=106  Identities=22%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYY   86 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~   86 (556)
                      .+..|++.|...++.|+|++|+..|+......|..   ..+...++.++++.++|++|+...++-+++.|.+   ..+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            47889999999999999999999999999998876   4678889999999999999999999999999876   45788


Q ss_pred             HHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHH
Q 008730           87 RRGAAYLAMG--------KFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        87 ~lg~~~~~~g--------~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      .+|.+++..=        -..+|+..++..++..|+...+
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya  152 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA  152 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence            8898876542        2467999999999999987543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.63  E-value=0.00048  Score=68.77  Aligned_cols=106  Identities=25%  Similarity=0.230  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730           11 VSRAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~-g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   81 (556)
                      ...+..+..+|..|... |++++|+++|++|+++....      ...+...|.++.++|+|++|++.|+++....-++  
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l  190 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL  190 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence            34577888999999999 99999999999999984321      4567788999999999999999999998754321  


Q ss_pred             -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        82 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                           ...++..+.|+...|++-.|...+++....+|...
T Consensus       191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence                 23567788899999999999999999999998653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.63  E-value=0.00032  Score=70.05  Aligned_cols=101  Identities=23%  Similarity=0.266  Sum_probs=83.7

Q ss_pred             HHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 008730           21 ANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF   98 (556)
Q Consensus        21 g~~~~~~g--~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~   98 (556)
                      +.+.+..|  .+.+|.-.|++..+..+.++..++.+|.|++.+|+|++|...+.+++..+|+++.++.+++.+...+|+.
T Consensus       172 awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  172 AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            33444455  6999999999988888899999999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHHHHHHHHHhCCCCHHHHHH
Q 008730           99 -KEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        99 -~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                       +.+.+++.+....+|+++.....
T Consensus       252 ~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  252 TEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             CHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCChHHHHH
Confidence             66778888888889998766443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=8.3e-05  Score=69.48  Aligned_cols=88  Identities=24%  Similarity=0.263  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        53 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      .-|..+....+|..|+.+|.+|+.++|..+..|-+.+.||+++.+++.+....++|++++|+...+++.++.+...... 
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-   93 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-   93 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-
Confidence            3466777788999999999999999999999999999999999999999999999999999999999999998877666 


Q ss_pred             hHHHHhcCCC
Q 008730          133 KFEEAIAVPE  142 (556)
Q Consensus       133 ~~~~Ai~~~~  142 (556)
                       +.+||....
T Consensus        94 -~~eaI~~Lq  102 (284)
T KOG4642|consen   94 -YDEAIKVLQ  102 (284)
T ss_pred             -ccHHHHHHH
Confidence             566665443

>TIGR03729 acc_ester putative phosphoesterase

Probab=97.60  E-value=9.2e-05  Score=72.07  Aligned_cols=68  Identities=16%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             cceEeccCCCCH------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          294 HFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       294 ~i~vigDiHG~~------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      +|.+++|+|+++      ..|.++++.+.-. ..+.+|+.||++++++.+.+++..+..+   .+..|+++.||||..
T Consensus         1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~   74 (239)
T TIGR03729         1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQ-KIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML   74 (239)
T ss_pred             CEEEEEeecCCCCCCCHHHHHHHHHHHHHhc-CCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence            488999999753      2245566655332 3467999999999887777766666553   335699999999974

Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.58  E-value=0.00017  Score=46.55  Aligned_cols=32  Identities=31%  Similarity=0.353  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   80 (556)
                      .+|+.+|.++.++|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45555666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain

Probab=97.54  E-value=0.0002  Score=65.94  Aligned_cols=45  Identities=18%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             CCCeeeecccccCCCChH--HHHHH-HHhccccCCCeEEEecccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSV--EVILT-LFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~--e~l~~-l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      .+.+|++||++|......  +.... +..+ ...+-.+++++||||...
T Consensus        42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~GNHD~~~   89 (172)
T cd07391          42 PERLIILGDLKHSFGGLSRQEFEEVAFLRL-LAKDVDVILIRGNHDGGL   89 (172)
T ss_pred             CCEEEEeCcccccccccCHHHHHHHHHHHh-ccCCCeEEEEcccCccch
Confidence            357999999998654332  22211 1222 234468999999999753

This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.52  E-value=0.0018  Score=56.55  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 008730           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQ  120 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~  120 (556)
                      .+..++..|...++.|+|++|++.++.+....|..   ..+.+.++.+|+..+++++|+..+++-++++|.++.   +++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            46678899999999999999999999999998864   678999999999999999999999999999998864   566


Q ss_pred             HHHHHHHHHhh
Q 008730          121 KVKECEKAVKK  131 (556)
Q Consensus       121 ~l~~~~~~~~~  131 (556)
                      ..|.++.....
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            66766655543

>TIGR00619 sbcd exonuclease SbcD

Probab=97.46  E-value=0.0002  Score=70.22  Aligned_cols=73  Identities=22%  Similarity=0.253  Sum_probs=47.5

Q ss_pred             CcceEeccCC-CC-----------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHH----HHHHhccccCCCeEE
Q 008730          293 KHFTVCGDVH-GQ-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIY  356 (556)
Q Consensus       293 ~~i~vigDiH-G~-----------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l----~~l~~lk~~~p~~v~  356 (556)
                      ++++.++|+| |.           ...|.++++.+.-. ..+.+|+.||++|+...+.+..    .++..|+...|-.|+
T Consensus         1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~   79 (253)
T TIGR00619         1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIV   79 (253)
T ss_pred             CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence            4689999999 32           23444555443222 3467999999999986655433    344445433335799


Q ss_pred             Eecccccccc
Q 008730          357 LSRGNHESKS  366 (556)
Q Consensus       357 ~lrGNHE~~~  366 (556)
                      ++.||||...
T Consensus        80 ~i~GNHD~~~   89 (253)
T TIGR00619        80 VISGNHDSAQ   89 (253)
T ss_pred             EEccCCCChh
Confidence            9999999753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.45  E-value=0.0043  Score=57.60  Aligned_cols=120  Identities=28%  Similarity=0.352  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHhCC---CChHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDP---RYPKGYY   86 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~   86 (556)
                      +.....+...+..+...+++.+|+..+.+++...+.........+. ++...|+++.|+..+.+++..+|   .....+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  171 (291)
T COG0457          92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL  171 (291)
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence            3445566667777777777777777777777766666555555555 67777777777777777766665   3455556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVK  130 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~~~~~~~  130 (556)
                      .++..+...+++++|+..+.+++...+. ....+..++..+...+
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            6666666777777777777777777777 5666666666665554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.45  E-value=0.0045  Score=62.26  Aligned_cols=129  Identities=16%  Similarity=0.128  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGA   90 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~   90 (556)
                      ..++.....|..-+..|+|.+|+....++-+..+.-.-++..-+.+-.++|+++.|-.++.++-+..++ ...+...++.
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar  161 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR  161 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence            345666778888899999999999999988888887777877788999999999999999999999443 5678889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+...|++..|.....++++..|.++.+.....++|...|.  +.+.+.+.+
T Consensus       162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~--~~~ll~~l~  211 (400)
T COG3071         162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA--WQALLAILP  211 (400)
T ss_pred             HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence            99999999999999999999999999999999999999887  555555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.0016  Score=68.40  Aligned_cols=119  Identities=15%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------------------
Q 008730           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------------------   78 (556)
Q Consensus        18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------------------   78 (556)
                      +..+.+.++.+..++|+..++   -+++.+..+....|++++++|+|++|++.|+..++-+                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            688999999999999999998   5677777888999999999999999999999885432                   


Q ss_pred             -----------C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHHhh
Q 008730           79 -----------P-RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PND--------PDAAQKVKECEKAVKK  131 (556)
Q Consensus        79 -----------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~--------~~~~~~l~~~~~~~~~  131 (556)
                                 | +..+.+|+.|-++...|+|.+|++.+++|+++.       ..+        ......++.++..+|+
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                       1 245689999999999999999999999996552       111        1244566677777776


Q ss_pred             hhHHHHhcCC
Q 008730          132 LKFEEAIAVP  141 (556)
Q Consensus       132 ~~~~~Ai~~~  141 (556)
                        .++|.+++
T Consensus       240 --t~ea~~iy  247 (652)
T KOG2376|consen  240 --TAEASSIY  247 (652)
T ss_pred             --hHHHHHHH
Confidence              56665543

>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain

Probab=97.45  E-value=0.00021  Score=70.72  Aligned_cols=73  Identities=18%  Similarity=0.165  Sum_probs=47.0

Q ss_pred             cceEeccCC-C------------CHHHHHHHHHhcCCCCCCCCeeeecccccCCCC-hHHHHHHHHhccccCCCeEEEec
Q 008730          294 HFTVCGDVH-G------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSR  359 (556)
Q Consensus       294 ~i~vigDiH-G------------~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-s~e~l~~l~~lk~~~p~~v~~lr  359 (556)
                      |+.+|+|+| +            ....+.++++.+.... .+.+|++||+++.|.. +.+-+..+...-...+-.++.+.
T Consensus         2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~-~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~   80 (267)
T cd07396           2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRES-LDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL   80 (267)
T ss_pred             eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCC-CCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence            588999999 2            2456667777664332 4569999999998873 22333333322222234689999


Q ss_pred             cccccccc
Q 008730          360 GNHESKSM  367 (556)
Q Consensus       360 GNHE~~~~  367 (556)
                      ||||....
T Consensus        81 GNHD~~~~   88 (267)
T cd07396          81 GNHDLYNP   88 (267)
T ss_pred             Cccccccc
Confidence            99998643

Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0047  Score=60.11  Aligned_cols=117  Identities=19%  Similarity=0.145  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH---------------------
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK---------------------   73 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~---------------------   73 (556)
                      ..-...+......|++.+|...+..++..+|++..+...++.||...|+.+.|...+..                     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            34456677889999999999999999999999999999999999999999777444333                     


Q ss_pred             -------------HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhh
Q 008730           74 -------------AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        74 -------------al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~~  131 (556)
                                   .+..+|++..+.+.+|..|...|+.++|.+.+-..++.+-  ++..+...+-.+....|.
T Consensus       215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence                         2233788888888888888888888888888888777754  344555555555555553

>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain

Probab=97.41  E-value=0.00025  Score=69.52  Aligned_cols=70  Identities=19%  Similarity=0.247  Sum_probs=45.0

Q ss_pred             ceEeccCCCCHHHHHHHHHhcCC--CCCCCCeeeecccccCCCCh-HHHH-------------HHHHhccccCCCeEEEe
Q 008730          295 FTVCGDVHGQFYDLLNIFELNGL--PSEENPYLFNGDFVDRGSFS-VEVI-------------LTLFAFKCMCPSAIYLS  358 (556)
Q Consensus       295 i~vigDiHG~~~~l~~~l~~~~~--~~~~~~~vflGD~vdrG~~s-~e~l-------------~~l~~lk~~~p~~v~~l  358 (556)
                      |+|+||+||+++.+.+.++....  ....+.+|++||+-..+..+ .+.+             .++-. ....|--+++|
T Consensus         1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g-~~~~p~~t~fi   79 (262)
T cd00844           1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSG-EKKAPILTIFI   79 (262)
T ss_pred             CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcC-CccCCeeEEEE
Confidence            68999999999998775543321  12356799999997544332 2222             12211 23356668999


Q ss_pred             ccccccc
Q 008730          359 RGNHESK  365 (556)
Q Consensus       359 rGNHE~~  365 (556)
                      .||||..
T Consensus        80 ~GNHE~~   86 (262)
T cd00844          80 GGNHEAS   86 (262)
T ss_pred             CCCCCCH
Confidence            9999964

Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.39  E-value=0.0018  Score=70.94  Aligned_cols=119  Identities=11%  Similarity=0.119  Sum_probs=102.7

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      -....++|.+|+....+.++..|+...+....|..+.++|+.++|...++..-...+++...+-.+-.||..++++++|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            45678999999999999999999999999999999999999999998888777778888899999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh--HHHHhcCCC
Q 008730          103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLK--FEEAIAVPE  142 (556)
Q Consensus       103 ~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~--~~~Ai~~~~  142 (556)
                      ..|+++...+|+ .+....+-.++.+.+..+  -+.|+++++
T Consensus        98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK  138 (932)
T KOG2053|consen   98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK  138 (932)
T ss_pred             HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 777777777777766644  333455444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.36  E-value=0.0009  Score=67.24  Aligned_cols=118  Identities=18%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC------CC
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP------RY   81 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~   81 (556)
                      -+++.++|+++.-.|+++.|+++|++.+.+.      ...+...+.+|.+|.-+.++++||.+..+-+.+.-      ..
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe  314 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE  314 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4678899999999999999999999988763      22466788999999999999999999998876632      34


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHHhh
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP-----N-DPDAAQKVKECEKAVKK  131 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~-~~~~~~~l~~~~~~~~~  131 (556)
                      ..+++.+|.++..+|..++|+.+.++.+++.-     . ...+..++......+|.
T Consensus       315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ  370 (639)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence            77999999999999999999999988888742     1 22345555555555554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.0017  Score=61.76  Aligned_cols=105  Identities=19%  Similarity=0.321  Sum_probs=91.2

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE----LNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~----~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      +..+.....+|...++.||.+.|..+|++.-+    ++.  .......+.+.+|.-.++|.+|...|.+.+..||.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            55667788999999999999999999994433    222  234567778888888999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      -.+.|.|+..+|+..+|++..+.++...|..
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999974

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.32  E-value=0.0053  Score=61.82  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      ++......+..+...|++++|.+...++++..-+.. .....+  ..+.++++.=++..++.++..|+++..+..+|..+
T Consensus       262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            356677788899999999999999999999765433 222222  34578899999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      .+.+.|.+|..+|+.|++..|+ ...+..++.++.++|+.
T Consensus       339 ~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~  377 (400)
T COG3071         339 LKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEP  377 (400)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCCh
Confidence            9999999999999999999887 56678889999888874

>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional

Probab=97.31  E-value=0.0004  Score=69.11  Aligned_cols=72  Identities=15%  Similarity=0.071  Sum_probs=46.6

Q ss_pred             CCcceEeccCC-C-----------CHHHHHHHHHhcC-CCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEe
Q 008730          292 GKHFTVCGDVH-G-----------QFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS  358 (556)
Q Consensus       292 ~~~i~vigDiH-G-----------~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~l  358 (556)
                      ..+++.|+|+| .           ....|.++++.+. ..+.-+-+|+.||+++.|.  .+-+..+...-...+..++++
T Consensus        14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v   91 (275)
T PRK11148         14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWL   91 (275)
T ss_pred             CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEe
Confidence            35799999999 1           2456777777653 2233467999999999874  222222222212224569999


Q ss_pred             ccccccc
Q 008730          359 RGNHESK  365 (556)
Q Consensus       359 rGNHE~~  365 (556)
                      .||||..
T Consensus        92 ~GNHD~~   98 (275)
T PRK11148         92 PGNHDFQ   98 (275)
T ss_pred             CCCCCCh
Confidence            9999973

>COG1409 Icc Predicted phosphohydrolases [General function prediction only]

Probab=97.29  E-value=0.0028  Score=63.44  Aligned_cols=73  Identities=18%  Similarity=0.257  Sum_probs=50.0

Q ss_pred             cceEeccCCCC------HHHHHHHHHhcCCCCCCCCeeeecccccCCCC-hHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          294 HFTVCGDVHGQ------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       294 ~i~vigDiHG~------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      +|+.|+|+|-.      ...+..+++.+..... |.+|+.||+.+.|.. +.+-+..++. +...|..+++++||||...
T Consensus         2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~-D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~~~   79 (301)
T COG1409           2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKP-DLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDARV   79 (301)
T ss_pred             eEEEEecCcccccccchHHHHHHHHHHHhcCCC-CEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcCCc
Confidence            58899999976      3345556676664433 679999999999632 2222222222 2356788999999999887


Q ss_pred             cc
Q 008730          367 MN  368 (556)
Q Consensus       367 ~~  368 (556)
                      .+
T Consensus        80 ~~   81 (301)
T COG1409          80 VN   81 (301)
T ss_pred             hH
Confidence            65

>PHA02546 47 endonuclease subunit; Provisional

Probab=97.28  E-value=0.00033  Score=71.84  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CcceEeccCC-C-----------CHHHHHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHh--cc--ccCCCeE
Q 008730          293 KHFTVCGDVH-G-----------QFYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFA--FK--CMCPSAI  355 (556)
Q Consensus       293 ~~i~vigDiH-G-----------~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~--lk--~~~p~~v  355 (556)
                      +|++.+||+| |           +...|.++++.+.-. ..+.+|+.||++|+. +.+.+++.++..  ++  ...+-.|
T Consensus         1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v   79 (340)
T PHA02546          1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITL   79 (340)
T ss_pred             CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence            4689999999 4           223445555544322 346799999999985 445555444433  11  1234579


Q ss_pred             EEecccccccc
Q 008730          356 YLSRGNHESKS  366 (556)
Q Consensus       356 ~~lrGNHE~~~  366 (556)
                      ++|.||||...
T Consensus        80 ~~I~GNHD~~~   90 (340)
T PHA02546         80 HVLVGNHDMYY   90 (340)
T ss_pred             EEEccCCCccc
Confidence            99999999743

>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain

Probab=97.28  E-value=0.00029  Score=67.58  Aligned_cols=73  Identities=27%  Similarity=0.291  Sum_probs=46.8

Q ss_pred             cceEeccCC-CCH--------------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHH----HhccccCCCe
Q 008730          294 HFTVCGDVH-GQF--------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL----FAFKCMCPSA  354 (556)
Q Consensus       294 ~i~vigDiH-G~~--------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l----~~lk~~~p~~  354 (556)
                      ||+.++|+| |..              ..|.++++.+... ..+.+|+.||++|.+..+.+.+..+    ..++. ..-.
T Consensus         1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   78 (223)
T cd00840           1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKE-AGIP   78 (223)
T ss_pred             CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHH-CCCC
Confidence            478999999 422              2355566554333 3456999999999886555443333    33321 1346


Q ss_pred             EEEecccccccccc
Q 008730          355 IYLSRGNHESKSMN  368 (556)
Q Consensus       355 v~~lrGNHE~~~~~  368 (556)
                      ++++.||||.....
T Consensus        79 v~~~~GNHD~~~~~   92 (223)
T cd00840          79 VFIIAGNHDSPSRL   92 (223)
T ss_pred             EEEecCCCCCcccc
Confidence            89999999976543

Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.28  E-value=0.0082  Score=54.36  Aligned_cols=112  Identities=15%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHcCCH
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-IDPRYPKGYYRRGAAYLAMGKF   98 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~~lg~~~~~~g~~   98 (556)
                      .+....+.=|.+.++....+.++..|. ..-.+.+|..+.++|++.+|...|++++. +...++..+..++.+++..++.
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            344555566777777777777887776 44577899999999999999999999986 5667899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhh
Q 008730           99 KEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        99 ~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~  132 (556)
                      .+|...+++..+..|.  .++....+++++...|+.
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~  176 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY  176 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCc
Confidence            9999999999999885  356677888888888774

>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain

Probab=97.25  E-value=0.00052  Score=62.86  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=43.6

Q ss_pred             ceEeccCCCCHHHH---------------HHHHHhcC-CCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEe
Q 008730          295 FTVCGDVHGQFYDL---------------LNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS  358 (556)
Q Consensus       295 i~vigDiHG~~~~l---------------~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~l  358 (556)
                      +++|+|+|=.....               ..+++.+. .....+.+|++||++++|..+.. +..+..+    +..++++
T Consensus         1 ~~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v   75 (168)
T cd07390           1 IYFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLI   75 (168)
T ss_pred             CeEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEE
Confidence            47889999444322               22333321 12235679999999999987644 4444443    3469999


Q ss_pred             ccccccccc
Q 008730          359 RGNHESKSM  367 (556)
Q Consensus       359 rGNHE~~~~  367 (556)
                      +||||....
T Consensus        76 ~GNHD~~~~   84 (168)
T cd07390          76 KGNHDSSLE   84 (168)
T ss_pred             eCCCCchhh
Confidence            999997654

This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.23  E-value=0.0061  Score=71.30  Aligned_cols=123  Identities=13%  Similarity=0.114  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAY   92 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~   92 (556)
                      .+..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|+..|++..+.  .|+ ...|..+..++
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~  659 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVA  659 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Confidence            34444445555555555555555554443 233444555555555555555555555554443  232 33444555555


Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      .+.|++++|.+.++++.+.. +.+...+..+..++.+.++  .++|.+++
T Consensus       660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~--~eeA~~lf  707 (1060)
T PLN03218        660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN--WKKALELY  707 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence            55555555555555555442 2234444455555544444  34444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0034  Score=61.68  Aligned_cols=93  Identities=25%  Similarity=0.332  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      +.-+-.-|+-|++.++|..|+..|.++++....    +...|.++|.|...+|+|..|+..+.+|+.++|.+..++..-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            445666799999999999999999999987544    3568999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHhcCCC
Q 008730          124 ECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       124 ~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .|...+.+  +++|....+
T Consensus       161 kc~~eLe~--~~~a~nw~e  177 (390)
T KOG0551|consen  161 KCLLELER--FAEAVNWCE  177 (390)
T ss_pred             HHHHHHHH--HHHHHHHHh
Confidence            99999988  677766655

>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain

Probab=97.18  E-value=0.00072  Score=65.72  Aligned_cols=68  Identities=26%  Similarity=0.354  Sum_probs=44.9

Q ss_pred             cceEeccCCCC------------HHHHHHHHHhcCCC-CCCCCeeeecccccCCCC-hH-HHHHHHHhccccCCCeEEEe
Q 008730          294 HFTVCGDVHGQ------------FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSF-SV-EVILTLFAFKCMCPSAIYLS  358 (556)
Q Consensus       294 ~i~vigDiHG~------------~~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~-s~-e~l~~l~~lk~~~p~~v~~l  358 (556)
                      |+.+++|+|=.            ...+.++++.+... +..+-+|++||+++.|.. .. .++..+..+    +-.++.+
T Consensus         1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v   76 (240)
T cd07402           1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLL   76 (240)
T ss_pred             CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEe
Confidence            48899999933            34566777755332 244579999999998753 22 233333333    3468999


Q ss_pred             ccccccc
Q 008730          359 RGNHESK  365 (556)
Q Consensus       359 rGNHE~~  365 (556)
                      +||||..
T Consensus        77 ~GNHD~~   83 (240)
T cd07402          77 PGNHDDR   83 (240)
T ss_pred             CCCCCCH
Confidence            9999974

GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.011  Score=56.41  Aligned_cols=125  Identities=17%  Similarity=0.208  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCC--CChHHHHHH
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIE----IDP--RYPKGYYRR   88 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~p--~~~~~~~~l   88 (556)
                      ..+.+..++...|+|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+++.+-+    ++.  .+.-+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            34567788889999999999999999998 67888999999999999999999999995543    332  234567778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +.++.-.+++.+|...|.+++..+|.++.+.++.+.|...+|+  ..+|++..+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~--l~DAiK~~e  310 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK--LKDALKQLE  310 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--HHHHHHHHH
Confidence            8888889999999999999999999999999999999999998  566666554

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.16  E-value=0.0017  Score=61.41  Aligned_cols=196  Identities=16%  Similarity=0.199  Sum_probs=101.7

Q ss_pred             EeccCCCC-----H-HHHHHHHHhcCCCCCCCCeeeecccccC--CCC-----hHHHHHHHHhccccCCCeEEEeccccc
Q 008730          297 VCGDVHGQ-----F-YDLLNIFELNGLPSEENPYLFNGDFVDR--GSF-----SVEVILTLFAFKCMCPSAIYLSRGNHE  363 (556)
Q Consensus       297 vigDiHG~-----~-~~l~~~l~~~~~~~~~~~~vflGD~vdr--G~~-----s~e~l~~l~~lk~~~p~~v~~lrGNHE  363 (556)
                      .|+|+|=.     . +.|.+.++..  .+..+.++++||++|-  |.+     -.+|...|..+ .....+|+.+.||||
T Consensus         2 FISDlHL~~~~p~~t~~fl~Fl~~~--a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i~GN~D   78 (237)
T COG2908           2 FISDLHLGPKRPALTAFFLDFLREE--AAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYIHGNHD   78 (237)
T ss_pred             eeeccccCCCCcHHHHHHHHHHHhc--cccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEecCchH
Confidence            58899832     2 3344555532  3345679999999972  322     24555555554 345679999999999


Q ss_pred             ccccccccCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCC------
Q 008730          364 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPP------  434 (556)
Q Consensus       364 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~------  434 (556)
                      . .+...++-.               .-.+.-+|-...+   +.+++++||....+...   ......+....+      
T Consensus        79 f-ll~~~f~~~---------------~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~---~y~~~r~~~~~~~~~~lf  139 (237)
T COG2908          79 F-LLGKRFAQE---------------AGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDR---AYQWFRYKVHWAWLQLLF  139 (237)
T ss_pred             H-HHHHHHHhh---------------cCceEEcCcceeeeecCcEEEEEeCCcccchHH---HHHHHHHHcccHHHHHHH
Confidence            4 333222100               0112334544333   68999999976332211   111010000000      


Q ss_pred             ----Cc--cchhhhhcCCCCCCCCCCcCCCCCc---cccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEec
Q 008730          435 ----EE--GLMCELLWSDPQPLPGRGPSKRGVG---LSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFS  505 (556)
Q Consensus       435 ----~~--~~~~~llw~dp~~~~~~~~~~rg~g---~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfS  505 (556)
                          ..  ..+..-+|+.-    .|........   ....+..+.+-++++|++.+|.||.-.+..-...- ..-|-   
T Consensus       140 lnl~l~~R~ri~~k~r~~s----~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~-~~yi~---  211 (237)
T COG2908         140 LNLPLRVRRRIAYKIRSLS----SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPG-ITYIN---  211 (237)
T ss_pred             HHhHHHHHHHHHHHHHHhh----HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCC-ceEEe---
Confidence                00  01112345543    1111111111   13457788888999999999999998765554322 11111   


Q ss_pred             CCCCCCCCCCeEEEEEEecCC
Q 008730          506 APNYCDQMGNKGAFIRFEAPT  526 (556)
Q Consensus       506 a~~y~~~~~n~~a~~~~~~~~  526 (556)
                          +|.-...|+++.+.++.
T Consensus       212 ----lGdW~~~~s~~~v~~~~  228 (237)
T COG2908         212 ----LGDWVSEGSILEVDDGG  228 (237)
T ss_pred             ----cCcchhcceEEEEecCc
Confidence                12233567899994443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.16  E-value=0.0023  Score=63.40  Aligned_cols=118  Identities=14%  Similarity=0.206  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----C---
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----Y---   81 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~---   81 (556)
                      +....+|+++...+.|+++++.|++|++..-++      ...+..+|..+-+++++++|+-+..+|.++--.    +   
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            566778999999999999999999999875443      356788999999999999999999999877432    2   


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhh
Q 008730           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~~~~  132 (556)
                         ..+++.++.++..+|+.-.|.+++++|.++.      |-......-++.+|...+..
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~  262 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL  262 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence               3467888999999999999999999998874      22344556677777776663

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.13  E-value=0.0015  Score=67.53  Aligned_cols=107  Identities=25%  Similarity=0.279  Sum_probs=95.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      -|..++-....|+-.+..+....|+..|.+++...|.....+.+++.++++.   |+.-.|+.++..|++++|...++++
T Consensus       370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~  449 (758)
T KOG1310|consen  370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF  449 (758)
T ss_pred             chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence            3566777888888888899999999999999999999999999999999885   5778899999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      .++.++..++++.+|+.+...+....|.+.
T Consensus       450 ~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  450 RLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            999999999999999999887766667443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.11  E-value=0.018  Score=48.15  Aligned_cols=98  Identities=23%  Similarity=0.310  Sum_probs=75.1

Q ss_pred             HHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 008730           14 AEELKA--LANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI--   77 (556)
Q Consensus        14 a~~~~~--lg~~~~~~g~~~~Al~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--   77 (556)
                      +.+|..  .|...+..|-|++|...+++|.+..-.            ++.++-.|+.++..+|+|++++....+++..  
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            344544  455667889999999999999987532            3456778899999999999999988888853  


Q ss_pred             -----CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           78 -----DPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        78 -----~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                           +.+.    ..+-+.+|.++..+|+.++|+..|+.+-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                 4443    456788999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.09  E-value=0.01  Score=69.45  Aligned_cols=126  Identities=14%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCCChHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRR   88 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~l   88 (556)
                      ...|..+...|.+.|++++|++.|++..+.. ..+...|..+..++.+.|++++|.+.+++....    .|+ ...|..+
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaL  585 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL  585 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence            3455555556666666666666666554432 123455556666666666666666666665442    332 4455555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      -.+|.+.|++++|.+.|+++.+.+ +.+...+..+...+.+.|+  +++|+.++.
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~--~deAl~lf~  638 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD--WDFALSIYD  638 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence            566666666666666666666654 3344555555555555554  455555443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.08  E-value=0.007  Score=60.34  Aligned_cols=117  Identities=13%  Similarity=0.058  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      .|..+.+...+.+..+.|...|.+|++..+.....|...|...+. .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            466777778888889999999999997666678999999998777 5666669999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhh
Q 008730           95 MGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKL  132 (556)
Q Consensus        95 ~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~  132 (556)
                      .++.+.|+..|++++..-|...   ..|..+.......|..
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl  123 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL  123 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999877655   4666666666655543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.012  Score=55.65  Aligned_cols=84  Identities=17%  Similarity=0.137  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPR----------YPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al  109 (556)
                      ..++...|+-+++.|+|++|...|+.|+..        .|.          ....+.+.+.|+...|+|-+++++....|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            456888999999999999999999999743        232          34578999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHhh
Q 008730          110 KLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus       110 ~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ...|.|..+++..+++....-+
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn  279 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWN  279 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcC
Confidence            9999999999999988765544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.08  E-value=0.0029  Score=71.74  Aligned_cols=121  Identities=10%  Similarity=-0.043  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAY   92 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~   92 (556)
                      ..+..+...|.+.|++++|...|++.   .+.+..+|..+...|.+.|++++|+..|++..+.  .| +..++..+..++
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~  335 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIF  335 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            34455555666666666666666543   3345555666666666666666666666555443  22 344555555556


Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      .+.|++++|.+.+..+++.. +.+..++..+...|.+.|+  .++|.+.+
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--~~~A~~vf  383 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--MEDARNVF  383 (697)
T ss_pred             HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--HHHHHHHH
Confidence            66666666666666555554 3344445555555555444  34444433

>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain

Probab=97.05  E-value=0.00082  Score=60.71  Aligned_cols=46  Identities=17%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CCCeeeecccccCCCChH-----HHHHHHHhccccC-CCeEEEecccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMC-PSAIYLSRGNHESKS  366 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~-----e~l~~l~~lk~~~-p~~v~~lrGNHE~~~  366 (556)
                      .+.+|++||++|.+....     +.+..+..+.... +-.++++.||||...
T Consensus        39 pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~   90 (156)
T cd08165          39 PDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF   90 (156)
T ss_pred             CCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence            457999999999876432     2222222222111 346999999999754

MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.05  E-value=0.0038  Score=44.84  Aligned_cols=48  Identities=13%  Similarity=0.266  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +.+|.+|..++++|+|++|..+.+.+|+.+|+|..+......+.....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            467888999999999999999999999999999888877776655543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.02  E-value=0.0013  Score=42.47  Aligned_cols=29  Identities=38%  Similarity=0.809  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      |+.+|.+|..+|++++|+++|+++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            33333333333333333333333333333

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.99  E-value=0.0014  Score=42.29  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   81 (556)
                      .+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            679999999999999999999999999999853

...

>PLN03077 Protein ECB2; Provisional

Probab=96.98  E-value=0.023  Score=66.09  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~   94 (556)
                      +..+-..|.+.|+.++|...|++.    +.+..+|..+...|.+.|+.++|++.|++..+.  .|+ ..++..+-.++..
T Consensus       527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~  601 (857)
T PLN03077        527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSR  601 (857)
T ss_pred             chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhh
Confidence            345556667777777777777664    445666777777777777777777777766653  343 3344444456666


Q ss_pred             cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           95 MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        95 ~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .|+.++|.+.|++..+..+  .+...+..+..++.+.|+  +++|.+..+
T Consensus       602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~--~~eA~~~~~  649 (857)
T PLN03077        602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK--LTEAYNFIN  649 (857)
T ss_pred             cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            7777777777776663321  123455556666666555  455555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.97  E-value=0.031  Score=51.69  Aligned_cols=100  Identities=25%  Similarity=0.316  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH-
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA-   90 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~-   90 (556)
                      .......+..+...+++..+...+..++.  ..+.....+...+..+...+++..|+..+.+++..++.........+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            56678888999999999999999999998  788889999999999999999999999999999988887666666777 


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      ++...|++++|...+++++...|
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Confidence            89999999999999999988777

>PRK10966 exonuclease subunit SbcD; Provisional

Probab=96.97  E-value=0.0012  Score=69.27  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=44.5

Q ss_pred             CcceEeccCC-CC-H------HH----HHHHHHhcCCCCCCCCeeeecccccCCCChHHHH----HHHHhccccCCCeEE
Q 008730          293 KHFTVCGDVH-GQ-F------YD----LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIY  356 (556)
Q Consensus       293 ~~i~vigDiH-G~-~------~~----l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l----~~l~~lk~~~p~~v~  356 (556)
                      ++++.++|+| |. +      .+    |..+.+.+... ..+.+|+.||++|++..+.+..    .++..|+.. +-.|+
T Consensus         1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~-~~~v~   78 (407)
T PRK10966          1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQT-GCQLV   78 (407)
T ss_pred             CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhc-CCcEE
Confidence            3689999999 42 1      11    23333333222 3457999999999986554332    334444422 34699


Q ss_pred             Eecccccccc
Q 008730          357 LSRGNHESKS  366 (556)
Q Consensus       357 ~lrGNHE~~~  366 (556)
                      ++.||||...
T Consensus        79 ~I~GNHD~~~   88 (407)
T PRK10966         79 VLAGNHDSVA   88 (407)
T ss_pred             EEcCCCCChh
Confidence            9999999753

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.95  E-value=0.0027  Score=65.17  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQA-IELNSQ--------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----   77 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~a-l~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----   77 (556)
                      +.+.++...++.++..|+|.+|.+.+... ++..|.        ...+|+++|.++++++.|.-+...|.+|++-     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999876543 222333        2345889999999999999999999999961     


Q ss_pred             ----CC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           78 ----DP---------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        78 ----~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                          .|         +..+.+|+.|..|...|+.-.|.++|.++......+|..|..+++|.....+
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~  384 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ  384 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence                12         3467899999999999999999999999999999999999999998765444

>PRK10941 hypothetical protein; Provisional

Probab=96.91  E-value=0.011  Score=58.04  Aligned_cols=78  Identities=18%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      ....++-.+|.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            346677888999999999999999999999999999999999999999999999999999999999998876655544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.89  E-value=0.007  Score=68.58  Aligned_cols=93  Identities=13%  Similarity=-0.024  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGA   90 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~   90 (556)
                      ...|..+...|.+.|+.++|++.|++..+.. .-+...+..+..++.+.|..++|.+.|+...+..+-  +...|..+..
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            4567777777777777777777777766542 113444555555555666666666666655542111  2234444445


Q ss_pred             HHHHcCCHHHHHHHHH
Q 008730           91 AYLAMGKFKEALKDFQ  106 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~  106 (556)
                      +|.+.|++++|.+.++
T Consensus       471 ~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        471 LLGREGLLDEAYAMIR  486 (697)
T ss_pred             HHHhcCCHHHHHHHHH
Confidence            5555555555554444

>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain

Probab=96.89  E-value=0.002  Score=62.39  Aligned_cols=66  Identities=23%  Similarity=0.195  Sum_probs=40.6

Q ss_pred             ceEeccCCCC---------HH----HH-HHHHHhc-CCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCCCeEEE
Q 008730          295 FTVCGDVHGQ---------FY----DL-LNIFELN-GLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYL  357 (556)
Q Consensus       295 i~vigDiHG~---------~~----~l-~~~l~~~-~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p~~v~~  357 (556)
                      |++++|+|-.         +.    ++ .++.+.+ ...+..|.+|+.||++++++..  .+.+.+|..+    |..++.
T Consensus         1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l----~~~v~~   76 (232)
T cd07393           1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL----PGTKVL   76 (232)
T ss_pred             CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhC----CCCeEE
Confidence            5789999955         21    23 2233321 1212456799999999887633  2444444433    234899


Q ss_pred             ecccccc
Q 008730          358 SRGNHES  364 (556)
Q Consensus       358 lrGNHE~  364 (556)
                      +.||||.
T Consensus        77 V~GNHD~   83 (232)
T cd07393          77 LKGNHDY   83 (232)
T ss_pred             EeCCccc
Confidence            9999997

DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.86  E-value=0.017  Score=60.09  Aligned_cols=119  Identities=19%  Similarity=0.231  Sum_probs=90.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------C------------
Q 008730           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------P------------   79 (556)
Q Consensus        19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p------------   79 (556)
                      ..-+..-+..+.++-++..++||+++|+++.+|..||.-  ......+|.+.|+++++..       .            
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            344455788999999999999999999999999998862  2233556666666666431       0            


Q ss_pred             --C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           80 --R----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        80 --~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                        .    .+.+..++|.|..++|+.+||++.++..++..|.  +..++.++-.++..++.  +.++-.+.
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--Yad~q~lL  318 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--YADVQALL  318 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--HHHHHHHH
Confidence              0    1456788999999999999999999999998875  45688888888877776  55554443

The molecular function of this protein is uncertain.

>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]

Probab=96.84  E-value=0.0032  Score=59.71  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             CcceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCC-----hHHHHHHHHhccccC
Q 008730          293 KHFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMC  351 (556)
Q Consensus       293 ~~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~lk~~~  351 (556)
                      .++.||+|+|=-+.                .+.+.+.++-.....+++|++||+-.-.+.     ..|+-.++-.++.. 
T Consensus        20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~-   98 (235)
T COG1407          20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER-   98 (235)
T ss_pred             CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence            46999999994333                223333321111123469999999865443     34555555444432 


Q ss_pred             CCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEeccc
Q 008730          352 PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL  413 (556)
Q Consensus       352 p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi  413 (556)
                        .+++++||||...-....++.-                  ..++.. .++ +++++||--
T Consensus        99 --evi~i~GNHD~~i~~~~~~~~v------------------~v~~~~-~i~-~~~~~HGh~  138 (235)
T COG1407          99 --EVIIIRGNHDNGIEEILPGFNV------------------EVVDEL-EIG-GLLFRHGHK  138 (235)
T ss_pred             --cEEEEeccCCCccccccccCCc------------------eeeeeE-Eec-CEEEEeCCC
Confidence              5999999999877665555421                  123333 244 799999843

>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related

Probab=96.83  E-value=0.002  Score=61.86  Aligned_cols=68  Identities=22%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             cceEeccCC-CCHHHHH------------HHHHhc----CCCCCCCCeeeecccccCCCC---hHHHHHHHHhccccCCC
Q 008730          294 HFTVCGDVH-GQFYDLL------------NIFELN----GLPSEENPYLFNGDFVDRGSF---SVEVILTLFAFKCMCPS  353 (556)
Q Consensus       294 ~i~vigDiH-G~~~~l~------------~~l~~~----~~~~~~~~~vflGD~vdrG~~---s~e~l~~l~~lk~~~p~  353 (556)
                      ++.||+|+| |.-..+.            +.++++    ... .-+.+|++||+.+....   ..++..++..+.    .
T Consensus        16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~-~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~   90 (225)
T TIGR00024        16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKY-GIEALIINGDLKHEFKKGLEWRFIREFIEVTF----R   90 (225)
T ss_pred             CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhc-CCCEEEEcCccccccCChHHHHHHHHHHHhcC----C
Confidence            488999999 5433221            223322    221 23579999999976554   233334444432    4


Q ss_pred             eEEEecccccccc
Q 008730          354 AIYLSRGNHESKS  366 (556)
Q Consensus       354 ~v~~lrGNHE~~~  366 (556)
                      .+++++||||...
T Consensus        91 ~v~~V~GNHD~~~  103 (225)
T TIGR00024        91 DLILIRGNHDALI  103 (225)
T ss_pred             cEEEECCCCCCcc
Confidence            7999999999754

Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.83  E-value=0.01  Score=49.33  Aligned_cols=92  Identities=14%  Similarity=0.213  Sum_probs=76.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHHHHHHhCCCChHHH
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEE-----------YGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      ++..++..|++-+|++..+..+...+++.   ..+..-|.++.++..           .-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57789999999999999999999988876   455666887776653           3468999999999999988888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      +.+|.-+-....|+++..-.+++|..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88888777777888888888888765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.81  E-value=0.029  Score=51.45  Aligned_cols=103  Identities=17%  Similarity=0.081  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .-.-+...++..+...+++++|+..++.++....+.   +-+-.++|.++.++|++++|+..+.....-+- .+..--.+
T Consensus        87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elr  165 (207)
T COG2976          87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELR  165 (207)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHh
Confidence            344566788999999999999999999998754332   34567889999999999999988866532211 12335668


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      |.++...|+-++|+..|+++++..++.
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            999999999999999999999988543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.063  Score=50.85  Aligned_cols=101  Identities=23%  Similarity=0.181  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCCh
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRYP   82 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~   82 (556)
                      +..|..-+..|...++|++|..++.+|.+-..++      +.++...|....++..+.++.+.|++|..+     .|+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            4556667778888899999999999999765544      456777788888899999999999999876     45555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      ..-...|--....-+.++|+..|++++.+-..
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            55555666666778899999999999987543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.035  Score=53.24  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           48 AVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        48 ~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      -..+..||.++.+.    +++.+|.-.|+..-+.-|..+..+...|.|...++++++|...++.||..++++++.+.++-
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            34466677777664    46888999999888877788999999999999999999999999999999999999999998


Q ss_pred             HHHHHHhh
Q 008730          124 ECEKAVKK  131 (556)
Q Consensus       124 ~~~~~~~~  131 (556)
                      .+...+|.
T Consensus       249 v~a~~~Gk  256 (299)
T KOG3081|consen  249 VLALHLGK  256 (299)
T ss_pred             HHHHHhCC
Confidence            88877776

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.78  E-value=0.0045  Score=64.90  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=95.8

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 008730           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK   99 (556)
Q Consensus        21 g~~~~~~g~~~~Al~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   99 (556)
                      |..+...|+-..|+.++..|+...|.... ...++|.++.+.+-..+|-..+.+++.++...|-.++.+|.+|..+.+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            44455679999999999999999997654 47899999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730          100 EALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus       100 ~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      .|++.|+.|++++|+++.....+..+..
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999999998877776544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.77  E-value=0.0054  Score=59.55  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=42.5

Q ss_pred             HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        58 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      ..+.|+.++|...|+.|+.++|+++.++...|......++.-+|-.+|-+|+.++|.+.+++.+.++.
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34556666666666666666666666666666666666666666666666666666666666555543

>PRK10941 hypothetical protein; Provisional

Probab=96.70  E-value=0.02  Score=56.34  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+-+.++-.++.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|..+++.-++..|+++.+-.-...+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            3556678889999999999999999999999999999999999999999999999999999999999998876655543

>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=96.70  E-value=0.069  Score=52.41  Aligned_cols=162  Identities=16%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             CCCeeeecccccCCCChH------HHHHHHHhccccC-CCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHh
Q 008730          321 ENPYLFNGDFVDRGSFSV------EVILTLFAFKCMC-PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF  393 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~------e~l~~l~~lk~~~-p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  393 (556)
                      .+.+||+||++|+|....      |.=.+...+.... ..-++.+.||||..       +...    ......+.|.++|
T Consensus        46 PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig-------~~~~----~~~~~~~rf~~~F  114 (257)
T cd08163          46 PDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG-------FGNG----VVLPVRQRFEKYF  114 (257)
T ss_pred             CCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC-------CCCC----CCHHHHHHHHHHh
Confidence            356999999999997532      1211222221110 13588999999963       2211    1123356677777


Q ss_pred             cccccccccCCeEEEEecccccCC---CCCh--hhhhhcccC-C-CCCCcc-c-h-hhhhcCCCCCCCC-----CCcCCC
Q 008730          394 CCLPLAHVLNQKVFVVHGGLFSVD---GVKL--SDIKTIDRF-C-EPPEEG-L-M-CELLWSDPQPLPG-----RGPSKR  458 (556)
Q Consensus       394 ~~lP~~~~i~~~~~~vHgGi~~~~---~~~~--~~i~~~~r~-~-~~~~~~-~-~-~~llw~dp~~~~~-----~~~~~r  458 (556)
                      ........+++--|++=-++ +..   ...+  .+..-+.+. . .++... + + .-=++..|....|     +.+.+.
T Consensus       115 g~~~~~~~~~~~~fV~Lds~-~l~~~~~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~  193 (257)
T cd08163         115 GPTSRVIDVGNHTFVILDTI-SLSNKDDPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPY  193 (257)
T ss_pred             CCCceEEEECCEEEEEEccc-cccCCcccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCccccCCCCCC
Confidence            65444444454333332222 110   0001  111101110 0 011111 1 1 1113333332111     223333


Q ss_pred             CCcc----ccCHHHHHHHHHHCCCCEEEeeccccccCceEec
Q 008730          459 GVGL----SFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEH  496 (556)
Q Consensus       459 g~g~----~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~  496 (556)
                      +.|+    .-.++.++..|+..+-.+|.-||+-  ++.+..|
T Consensus       194 ~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH--~~C~~~h  233 (257)
T cd08163         194 GYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH--DYCEVVH  233 (257)
T ss_pred             CCCccceeecCHHHHHHHHHhhCCcEEEecCCC--ccceeEc
Confidence            4442    4578999999999999999999986  4444433

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site

>TIGR00583 mre11 DNA repair protein (mre11)

Probab=96.68  E-value=0.0031  Score=65.65  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             CCCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHh
Q 008730          291 DGKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA  346 (556)
Q Consensus       291 ~~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~  346 (556)
                      +.+||++++|+|--            +..|.++++.+.-. ..|-+|+.||++|++.-|.+++..++.
T Consensus         2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~   68 (405)
T TIGR00583         2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLR   68 (405)
T ss_pred             CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHH
Confidence            45689999999932            45667777766433 356799999999999989888855443

All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.012  Score=56.98  Aligned_cols=86  Identities=14%  Similarity=0.204  Sum_probs=79.9

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      .+.+..+|++|+++...-.+.+|.+-..+..+|.||+...+|..|..+|++.-++.|......+..|..+++.+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 008730          103 KDFQQV  108 (556)
Q Consensus       103 ~~~~~a  108 (556)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            776654

>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain

Probab=96.64  E-value=0.0045  Score=55.26  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=80.8

Q ss_pred             eEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCch
Q 008730          296 TVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE  374 (556)
Q Consensus       296 ~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~  374 (556)
                      .|+||+||+++.+.+-++... ....-+-+|++||+..-...+-+ +.-...=....|--+|++-||||           
T Consensus         1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~-----------   68 (150)
T cd07380           1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP-----------   68 (150)
T ss_pred             CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC-----------
Confidence            489999999999987776532 22234569999999976665533 44444445677888999999998           


Q ss_pred             hhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCC
Q 008730          375 GEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRG  454 (556)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~  454 (556)
                                                  +-+||++|.=.  ..      +.+..+             +..+        
T Consensus        69 ----------------------------~~DILlTh~wP--~g------i~~~~~-------------~~~~--------   91 (150)
T cd07380          69 ----------------------------GVDILLTSEWP--KG------ISKLSK-------------VPFE--------   91 (150)
T ss_pred             ----------------------------CCCEEECCCCc--hh------hhhhCC-------------Cccc--------
Confidence                                        44799999622  11      111110             0000        


Q ss_pred             cCCCCCccccCHHHHHHHHHHCCCCEEEeecccc
Q 008730          455 PSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVK  488 (556)
Q Consensus       455 ~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~  488 (556)
                          +.+..-|...+.+++++..=++.+-||.-+
T Consensus        92 ----~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~  121 (150)
T cd07380          92 ----ETLLICGSDLIAELAKKLKPRYHFAGLEGV  121 (150)
T ss_pred             ----ccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence                112346788999999999999999999753

CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site

>PLN03077 Protein ECB2; Provisional

Probab=96.62  E-value=0.019  Score=66.65  Aligned_cols=95  Identities=17%  Similarity=0.100  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CChHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPKGYYRR   88 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~l   88 (556)
                      +...|..+...|.+.|+.++|++.|++..+.  .|+ ...+..+-.++.+.|..++|.+.|+...+..+  -+...|..+
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            4567777777888888888888888877664  344 33344444556677777777777777663321  134566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 008730           89 GAAYLAMGKFKEALKDFQQV  108 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~a  108 (556)
                      ..++.+.|++++|.+.+++.
T Consensus       632 v~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        632 VDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHC
Confidence            77777777777776666653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.61  E-value=0.016  Score=51.45  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   76 (556)
                      ...+..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++.+|++.|++..+
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            455667888889999999999999999999999999999999999999999999999998854

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.54  E-value=0.037  Score=64.74  Aligned_cols=128  Identities=13%  Similarity=0.007  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------   81 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------   81 (556)
                      .......+|..+...|++++|...++++++..+..     ..+...+|.++...|++++|...+++++......      
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            34555667888999999999999999999865543     2356778999999999999999999999763321      


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--------DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..++..+|.++...|++++|...+++++.+...        ....+..++.++...|+  +++|.....
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~~~  597 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR--LDEAEQCAR  597 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence            346778899999999999999999999987322        12234456666666666  566655544

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain

Probab=96.52  E-value=0.0046  Score=59.02  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=21.7

Q ss_pred             cCHHHHHHHHHHCCCCEEEeeccccccC
Q 008730          464 FGADVTKRFLQDNSLDLVVRSHEVKDEG  491 (556)
Q Consensus       464 fg~~~~~~fl~~~~~~~iir~H~~~~~G  491 (556)
                      .....+.+.++..+++.+|-||.-...-
T Consensus       176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~  203 (217)
T cd07398         176 VFEEAVARLARRKGVDGVICGHTHRPAL  203 (217)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCCCCCe
Confidence            3456677778889999999999975433

YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.52  E-value=0.04  Score=63.53  Aligned_cols=115  Identities=13%  Similarity=0.008  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLA   94 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~   94 (556)
                      +..+...|.+.+.+++|.++|+.-++...+....|..+|..+++..+-+.|...+.+|++.-|.  ..+..-..|...++
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            3445556666777777777777777766666777777777777777777777777777777776  56666666777777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      .|+.+.++..|+-.+.-.|...+.|..+.......+.
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence            7777777777777777777777777666665555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.52  E-value=0.073  Score=54.92  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      .+.|...|+--..++++..|...|++||..+..+..+|...+.+-++.+...-|...+.+|+.+-|.--..|+..-..-.
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            45677778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQ  120 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~  120 (556)
                      .+|+...|.+.|++-+...|+. .+|.
T Consensus       153 ~LgNi~gaRqiferW~~w~P~e-qaW~  178 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPDE-QAWL  178 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCcH-HHHH
Confidence            9999999999999999999973 4443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.48  E-value=0.049  Score=63.67  Aligned_cols=127  Identities=11%  Similarity=0.015  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------   80 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------   80 (556)
                      ...++..+|..+...|++++|...++++++.....      ..++.++|.++...|++++|...+++++.+-..      
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            34567788999999999999999999999764321      345678899999999999999999999886221      


Q ss_pred             --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        81 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                        ....+..+|.++...|++++|...+++++.....     ...++..++.+....|+  +++|....
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~l  635 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD--LDNARRYL  635 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence              2334667899999999999999999999887432     13334445566555554  55554443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.47  E-value=0.22  Score=47.91  Aligned_cols=121  Identities=16%  Similarity=0.175  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh--------CHHHHHHHHHHHHHhCC
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLE--------EYGSAIQDASKAIEIDP   79 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g--------~~~~A~~~~~~al~l~p   79 (556)
                      |-.-++...++.++++.++|++|+...++-+++.|.++   .+++.+|.++...=        --.+|+..++..++.-|
T Consensus        68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP  147 (254)
T COG4105          68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP  147 (254)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence            33467889999999999999999999999999998874   56778888876532        25678999999999999


Q ss_pred             CCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhh
Q 008730           80 RYP-----------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKK  131 (556)
Q Consensus        80 ~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~  131 (556)
                      +..                 .-=+..|..|.+.|.+-.|+.-++.+++.-|+..   +++..+..++..+|-
T Consensus       148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl  219 (254)
T COG4105         148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL  219 (254)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence            752                 1234567788899999999999999999977654   456666677777765

>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]

Probab=96.44  E-value=0.0099  Score=51.94  Aligned_cols=74  Identities=14%  Similarity=0.013  Sum_probs=45.6

Q ss_pred             ceEeccCCC------------CHHHHHHH-HHhc-CCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecc
Q 008730          295 FTVCGDVHG------------QFYDLLNI-FELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRG  360 (556)
Q Consensus       295 i~vigDiHG------------~~~~l~~~-l~~~-~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrG  360 (556)
                      ++.+||+|=            +.+....+ +... ....++|.+.+|||+.-.-..-.+..+.+-.|    |+++++++|
T Consensus         6 myfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~G   81 (186)
T COG4186           6 MYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPG   81 (186)
T ss_pred             EEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHc----CCcEEEeeC
Confidence            788888882            33333222 2211 12234667999999986555445555555444    689999999


Q ss_pred             cccccccccccC
Q 008730          361 NHESKSMNKIYG  372 (556)
Q Consensus       361 NHE~~~~~~~~g  372 (556)
                      |||-.......+
T Consensus        82 NhDk~~~~~~~~   93 (186)
T COG4186          82 NHDKCHPMYRHA   93 (186)
T ss_pred             CCCCCcccccch
Confidence            999766554433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.43  E-value=0.0059  Score=38.78  Aligned_cols=31  Identities=32%  Similarity=0.657  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      +++++|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666665554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.037  Score=54.68  Aligned_cols=121  Identities=11%  Similarity=-0.054  Sum_probs=100.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHc
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY---PKGYYRRGAAYLAM   95 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~---~~~~~~lg~~~~~~   95 (556)
                      .+......|++.+|...+++.++-.|.+.-++..--.++..+|+.......+++++-. +|+.   ..+.-.++-.+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3455677889999999999999999999988888888888999999999999999877 7665   44555567788899


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |-|++|.+.-+++++++|.+.-+...++.+++..++  ..++.+...
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--~Keg~eFM~  233 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR--HKEGKEFMY  233 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch--hhhHHHHHH
Confidence            999999999999999999998888888888887777  456655443

>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]

Probab=96.36  E-value=0.23  Score=46.71  Aligned_cols=212  Identities=15%  Similarity=0.144  Sum_probs=110.8

Q ss_pred             CCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccc--cCCCChHHHHH-HHHhccccCCCeEEEecccccccccc
Q 008730          292 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVIL-TLFAFKCMCPSAIYLSRGNHESKSMN  368 (556)
Q Consensus       292 ~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~v--drG~~s~e~l~-~l~~lk~~~p~~v~~lrGNHE~~~~~  368 (556)
                      .+++..+.|+||.++.+.+++...... .-+.+|+.||+.  +.|+.-.-.-. .+..++. ..-.|+.++||-|...+-
T Consensus         3 ~mkil~vtDlHg~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~~~v~   80 (226)
T COG2129           3 KMKILAVTDLHGSEDSLKKLLNAAADI-RADLLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDPPEVI   80 (226)
T ss_pred             cceEEEEeccccchHHHHHHHHHHhhc-cCCEEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCChHHHH
Confidence            367999999999999999998877644 345699999999  88875322221 1333332 236899999998865442


Q ss_pred             cccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCC------CChhhhhhcccC-CCCCCccchhh
Q 008730          369 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG------VKLSDIKTIDRF-CEPPEEGLMCE  441 (556)
Q Consensus       369 ~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~------~~~~~i~~~~r~-~~~~~~~~~~~  441 (556)
                      ...       ...+..+          .+-...+++-.||-=||. .|..      .+-++|...-+. .....+..---
T Consensus        81 ~~l-------~~~~~~v----------~~~v~~i~~~~~~G~Ggs-n~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il  142 (226)
T COG2129          81 DVL-------KNAGVNV----------HGRVVEIGGYGFVGFGGS-NPTPFNTPREFSEDEIYSKLKSLVKKADNPVNIL  142 (226)
T ss_pred             HHH-------Hhccccc----------ccceEEecCcEEEEeccc-CCCCCCCccccCHHHHHHHHHHHHhcccCcceEE
Confidence            110       0000000          011112233333333454 2221      112222222111 00000000000


Q ss_pred             hhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 008730          442 LLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR  521 (556)
Q Consensus       442 llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~  521 (556)
                      ++..-|-... .. .+-| -..-|..+++++.++.+-.+.|.||=-...|+.---    =||+-.|.--  ..-..|++.
T Consensus       143 ~~HaPP~gt~-~d-~~~g-~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG----~TivVNPG~~--~~g~yA~i~  213 (226)
T COG2129         143 LTHAPPYGTL-LD-TPSG-YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIG----NTIVVNPGPL--GEGRYALIE  213 (226)
T ss_pred             EecCCCCCcc-cc-CCCC-ccccchHHHHHHHHHhCCceEEEeeecccccccccC----CeEEECCCCc--cCceEEEEE
Confidence            1111111110 00 1112 135689999999999999999999977667765321    2666666432  345568888


Q ss_pred             EecCCCceeEEEE
Q 008730          522 FEAPTLKPNIVTF  534 (556)
Q Consensus       522 ~~~~~~~~~~~~~  534 (556)
                      +++.  .+...+|
T Consensus       214 l~~~--~Vk~~~~  224 (226)
T COG2129         214 LEKE--VVKLEQF  224 (226)
T ss_pred             ecCc--EEEEEEe
Confidence            8333  5555565

>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain

Probab=96.35  E-value=0.0072  Score=59.42  Aligned_cols=28  Identities=21%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             HHHHHHHCCCCEEEeeccccccCceEec
Q 008730          469 TKRFLQDNSLDLVVRSHEVKDEGYEIEH  496 (556)
Q Consensus       469 ~~~fl~~~~~~~iir~H~~~~~G~~~~~  496 (556)
                      +.+.+++.++++++-||.-...+....|
T Consensus       190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~h  217 (256)
T cd07401         190 FKDLLKKYNVTAYLCGHLHPLGGLEPVH  217 (256)
T ss_pred             HHHHHHhcCCcEEEeCCccCCCcceeee
Confidence            7778889999999999999888845444

TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.1  Score=49.14  Aligned_cols=87  Identities=17%  Similarity=0.212  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHH-hhCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHc
Q 008730           29 KYSQAIDLYSQAIELNSQNAVY------YANRAFAHTK-LEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAM   95 (556)
Q Consensus        29 ~~~~Al~~~~~al~~~p~~~~a------~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~   95 (556)
                      +.++|+.++++++++.-+-...      +..+|..|.. +.++++|+.+|+++-+-...      -...+...|..-..+
T Consensus        88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l  167 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL  167 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence            4555555555555443322211      2234444432 24455555555554432111      122333334444444


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 008730           96 GKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~~  115 (556)
                      ++|.+|+..|++..+..-++
T Consensus       168 eqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            55555555555554444333

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.29  E-value=0.049  Score=55.31  Aligned_cols=98  Identities=18%  Similarity=0.296  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--------QN----------AVYYANRAFAHTKLEEYGSAIQDASKAI   75 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p--------~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al   75 (556)
                      .+.-...|...+++++|..|..-|+.||++..        ..          ...-..+..||.++++.+.|+....+.+
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            45555677888999999999999999998732        11          2235578899999999999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      .++|.++.-+...|.|...+.+|.+|...+.-|.-+
T Consensus       256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887766543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.29  E-value=0.06  Score=59.55  Aligned_cols=110  Identities=17%  Similarity=0.077  Sum_probs=93.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..|+..-+....|..+.+.|++++|..+++..-...+++-..+.-+-.||..++++++|...|+++++.+|+ -+.++.+
T Consensus        38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l  116 (932)
T KOG2053|consen   38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL  116 (932)
T ss_pred             HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence            457777778888999999999999998888777778888888999999999999999999999999999999 8889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      -.+|.+.+.|.+-.+.--+..+..|+++...
T Consensus       117 FmayvR~~~yk~qQkaa~~LyK~~pk~~yyf  147 (932)
T KOG2053|consen  117 FMAYVREKSYKKQQKAALQLYKNFPKRAYYF  147 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence            9999999998875555555555778776543

>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain

Probab=96.25  E-value=0.005  Score=57.19  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCCeeeecccccCCCCh--HHHHHHHHhccccC----CCeEEEeccccccc
Q 008730          321 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMC----PSAIYLSRGNHESK  365 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~----p~~v~~lrGNHE~~  365 (556)
                      .+.+||+||++|.|+.+  .+....+..++..+    .-.++.|.||||..
T Consensus        43 PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG   93 (195)
T cd08166          43 PDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG   93 (195)
T ss_pred             CCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence            35699999999999964  33566555554222    24678899999974

A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.23  E-value=0.061  Score=55.48  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=73.7

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 008730           24 AFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK   99 (556)
Q Consensus        24 ~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   99 (556)
                      -....|.+.+.+.|+.+|++=|..    +..|...|....+..+...|.+.+-.|+-..|.+- ..-..-.+-.++++++
T Consensus       376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efD  454 (677)
T KOG1915|consen  376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFD  454 (677)
T ss_pred             HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHH
Confidence            355677777777777777777754    56666677777777777777777777777777642 2222223445667777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730          100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK  133 (556)
Q Consensus       100 ~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~  133 (556)
                      ...+.|++-++.+|++-.+|...+.+...+|..+
T Consensus       455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd  488 (677)
T KOG1915|consen  455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD  488 (677)
T ss_pred             HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence            7777777777777777777777777777777644

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.4  Score=45.36  Aligned_cols=131  Identities=23%  Similarity=0.230  Sum_probs=90.4

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-   81 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-   81 (556)
                      .-.+.++.+..-|+.|--.++|..|=..|-++-++.-.      .+..|...+.||. ..+.++|+.++++++++..+- 
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~G  107 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMG  107 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhh
Confidence            34455677777788888888999988888888776421      2344555666664 459999999999999986553 


Q ss_pred             -----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 -----PKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 -----~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~------~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                           ...+..+|.+|..- .++++|+.+|++|-+.......      .+...+.....+++  |.+||..++
T Consensus       108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq--Y~~Ai~iye  178 (288)
T KOG1586|consen  108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ--YSKAIDIYE  178 (288)
T ss_pred             HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence                 33566888888765 8999999999999887544321      22222233333333  788877766

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.16  E-value=0.083  Score=52.63  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 008730           12 SRAEELKALANEAFR-AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYR   87 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~-~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~   87 (556)
                      ...+.|...|..-+. .++.+.|...|+.+++..|.+...|......+...++.+.|...|++++..-|...   ..|-.
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~  112 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK  112 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            345678888888777 57777799999999999999999999999999999999999999999998866654   57777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      ....-...|+.+...+..+++.+..|++....
T Consensus       113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~  144 (280)
T PF05843_consen  113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLE  144 (280)
T ss_dssp             HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence            78888889999999999999999999854443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain

Probab=96.16  E-value=0.0096  Score=58.05  Aligned_cols=69  Identities=20%  Similarity=0.200  Sum_probs=39.9

Q ss_pred             eEeccCC--CCH---HHHHHHHHhc-CCCC---CCCCeeeecccccCCCC------------h----HHHHHHHHhcccc
Q 008730          296 TVCGDVH--GQF---YDLLNIFELN-GLPS---EENPYLFNGDFVDRGSF------------S----VEVILTLFAFKCM  350 (556)
Q Consensus       296 ~vigDiH--G~~---~~l~~~l~~~-~~~~---~~~~~vflGD~vdrG~~------------s----~e~l~~l~~lk~~  350 (556)
                      ++|+|+|  +..   ..+..+++.+ +..+   .-+.+|++||++|+...            .    .++..++..+.  
T Consensus         2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--   79 (243)
T cd07386           2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--   79 (243)
T ss_pred             EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--
Confidence            5899999  331   2223333322 2221   33679999999997310            0    12333444443  


Q ss_pred             CCCeEEEecccccccc
Q 008730          351 CPSAIYLSRGNHESKS  366 (556)
Q Consensus       351 ~p~~v~~lrGNHE~~~  366 (556)
                      ..-.|+++.||||...
T Consensus        80 ~~~~v~~ipGNHD~~~   95 (243)
T cd07386          80 SHIKIIIIPGNHDAVR   95 (243)
T ss_pred             cCCeEEEeCCCCCccc
Confidence            2357999999999754

The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.16  E-value=0.011  Score=37.58  Aligned_cols=31  Identities=26%  Similarity=0.201  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   80 (556)
                      +++.+|.++.+.|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=96.16  E-value=0.0076  Score=60.47  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=41.1

Q ss_pred             CcceEeccCCC----CHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEeccccc
Q 008730          293 KHFTVCGDVHG----QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHE  363 (556)
Q Consensus       293 ~~i~vigDiHG----~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE  363 (556)
                      -+++|+||.|.    ....+.++.+.   ...-+-+|++||+++-+...     -+.+..+..+....  -++.++||||
T Consensus         5 ~~f~v~gD~~~~~~~~~~~~~~l~~~---~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~GNHD   79 (294)
T cd00839           5 FKFAVFGDMGQNTNNSTNTLDHLEKE---LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYV--PYMVTPGNHE   79 (294)
T ss_pred             EEEEEEEECCCCCCCcHHHHHHHHhc---cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcC--CcEEcCcccc
Confidence            46999999995    23333333332   22345699999999544322     12222332232233  4888999999


Q ss_pred             cccc
Q 008730          364 SKSM  367 (556)
Q Consensus       364 ~~~~  367 (556)
                      ....
T Consensus        80 ~~~~   83 (294)
T cd00839          80 ADYN   83 (294)
T ss_pred             cccC
Confidence            8654

Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.15  E-value=0.03  Score=40.22  Aligned_cols=40  Identities=25%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .++.+|..++++|+|++|..+++.+++.+|+|..+.....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3455666666666666666666666666666655544433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.15  E-value=0.12  Score=46.14  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      ......+..........++.+++...+...--+.|+.++.-..-|..++..|++.+|+..++.+....|..+.+--.++.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      |++.+++.+==. +-+++++.. .++.+......+...
T Consensus        87 CL~~~~D~~Wr~-~A~evle~~-~d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   87 CLYALGDPSWRR-YADEVLESG-ADPDARALVRALLAR  122 (160)
T ss_pred             HHHHcCChHHHH-HHHHHHhcC-CChHHHHHHHHHHHh
Confidence            999999864211 122344433 356665555544433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.15  E-value=0.017  Score=56.26  Aligned_cols=83  Identities=20%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      ....+..-.+.|....+.|+.++|...|+.|++++|.+++++...|......++.-+|-++|-+|+.++|.+.+++.+++
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            34456666677888899999999999999999999999999999999988889999999999999999999999999887


Q ss_pred             HHH
Q 008730           90 AAY   92 (556)
Q Consensus        90 ~~~   92 (556)
                      ...
T Consensus       192 RT~  194 (472)
T KOG3824|consen  192 RTT  194 (472)
T ss_pred             ccc
Confidence            643

>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain

Probab=96.09  E-value=0.0074  Score=59.10  Aligned_cols=66  Identities=26%  Similarity=0.282  Sum_probs=44.1

Q ss_pred             cceEeccCCCCH---------HHHHHHHHhcCCCCCCCCeeeecccccCCCChH-----HHHHHHHhccccCCCeEEEec
Q 008730          294 HFTVCGDVHGQF---------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSR  359 (556)
Q Consensus       294 ~i~vigDiHG~~---------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-----e~l~~l~~lk~~~p~~v~~lr  359 (556)
                      +|+.++|+||.+         ..+..++++..-...+..+|..||+++.++.+.     .++..+..+.    -.+ +..
T Consensus         2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g----~d~-~~~   76 (252)
T cd00845           2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG----YDA-VTI   76 (252)
T ss_pred             EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC----CCE-Eee
Confidence            488999999887         556666766544333445788999999887653     4555554442    233 345


Q ss_pred             ccccc
Q 008730          360 GNHES  364 (556)
Q Consensus       360 GNHE~  364 (556)
                      ||||.
T Consensus        77 GNHe~   81 (252)
T cd00845          77 GNHEF   81 (252)
T ss_pred             ccccc
Confidence            99996

This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich

>COG1408 Predicted phosphohydrolases [General function prediction only]

Probab=96.08  E-value=0.011  Score=58.80  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             CCcceEeccCCCCHHH--HHHHHHhcCCCCCCCCeeeecccccC--CCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730          292 GKHFTVCGDVHGQFYD--LLNIFELNGLPSEENPYLFNGDFVDR--GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  367 (556)
Q Consensus       292 ~~~i~vigDiHG~~~~--l~~~l~~~~~~~~~~~~vflGD~vdr--G~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~  367 (556)
                      +.+|+-++|+|=....  ..+.+....... .|.+++.|||+|+  -+....+...|..|+  .|-.+|.+.||||...-
T Consensus        44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~-~DlivltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~~~~  120 (284)
T COG1408          44 GLKIVQLSDLHSLPFREEKLALLIAIANEL-PDLIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDYGVD  120 (284)
T ss_pred             CeEEEEeehhhhchhhHHHHHHHHHHHhcC-CCEEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEecccccccc
Confidence            3579999999976655  222333322222 2779999999995  445556666777776  45579999999976543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.07  E-value=0.012  Score=38.64  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKK  110 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~  110 (556)
                      |.++|.+|..+|++++|+.+|+++|.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555555666666666666655443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.05  E-value=0.0082  Score=56.10  Aligned_cols=55  Identities=25%  Similarity=0.336  Sum_probs=27.3

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730           26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   80 (556)
                      +.+|.+.|.+.|.+++++-|+....|+.+|....+.|+++.|.+.|+++++++|.
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~   61 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE   61 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence            3444444555555555555554445555554444445555555555555555444

>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain

Probab=96.03  E-value=0.0085  Score=55.58  Aligned_cols=68  Identities=16%  Similarity=0.133  Sum_probs=44.0

Q ss_pred             eccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHH-HHHHHHhccccC---------------------CCeE
Q 008730          298 CGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE-VILTLFAFKCMC---------------------PSAI  355 (556)
Q Consensus       298 igDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e-~l~~l~~lk~~~---------------------p~~v  355 (556)
                      -=|++|+=.-|.++++..-+.-..+.++||||++|.|--+-+ --......+..+                     .-.+
T Consensus        22 rld~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~  101 (193)
T cd08164          22 RLDLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPL  101 (193)
T ss_pred             eehhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceE
Confidence            346678777788888877655555679999999998743322 122222222111                     2467


Q ss_pred             EEeccccccc
Q 008730          356 YLSRGNHESK  365 (556)
Q Consensus       356 ~~lrGNHE~~  365 (556)
                      ++|.||||.-
T Consensus       102 i~V~GNHDIG  111 (193)
T cd08164         102 INIAGNHDVG  111 (193)
T ss_pred             EEECCcccCC
Confidence            8999999984

Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.03  E-value=0.089  Score=54.74  Aligned_cols=93  Identities=13%  Similarity=0.145  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 008730           33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKL  111 (556)
Q Consensus        33 Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l  111 (556)
                      -...|+.|+...+.+...|.+...-..+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|.+.+.++|+.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            35679999999999999999988766677779999999999999999999999999998888776 99999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q 008730          112 SPNDPDAAQKVKEC  125 (556)
Q Consensus       112 ~p~~~~~~~~l~~~  125 (556)
                      +|+++..+...-+.
T Consensus       170 npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  170 NPDSPKLWKEYFRM  183 (568)
T ss_pred             CCCChHHHHHHHHH
Confidence            99999887665544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.03  E-value=0.013  Score=38.40  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAI   41 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al   41 (556)
                      |..+|.+|.+.|+|++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.03  E-value=0.071  Score=43.10  Aligned_cols=48  Identities=19%  Similarity=0.153  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730           34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (556)
Q Consensus        34 l~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   81 (556)
                      +..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344555555566666666666666666666666666665555555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.15  Score=49.08  Aligned_cols=103  Identities=21%  Similarity=0.260  Sum_probs=84.2

Q ss_pred             HHHHHHHHHH----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           16 ELKALANEAF----RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        16 ~~~~lg~~~~----~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      .+.++|.++.    ..+++.+|.-+|++.-+..|..+......+.|.+.+++|++|...++.++..++++++++.++-.+
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            4445555554    345789999999998887888899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHH-HHHHHHhCCCCHHH
Q 008730           92 YLAMGKFKEALKD-FQQVKKLSPNDPDA  118 (556)
Q Consensus        92 ~~~~g~~~~A~~~-~~~al~l~p~~~~~  118 (556)
                      -..+|.-.++..- +.+.....|+++-+
T Consensus       251 a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  251 ALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            9999987766554 44555556776554

>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=96.02  E-value=0.0065  Score=55.75  Aligned_cols=46  Identities=24%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CCCeeeecccccCCCChH--H---HHHHHHhccc-c----CCCeEEEecccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSV--E---VILTLFAFKC-M----CPSAIYLSRGNHESKS  366 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~--e---~l~~l~~lk~-~----~p~~v~~lrGNHE~~~  366 (556)
                      .+.+||+||++|.|....  +   .+..+..+.. .    .+-.++++.||||...
T Consensus        46 pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~  101 (171)
T cd07384          46 PDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY  101 (171)
T ss_pred             CCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence            456999999999887432  2   3333323211 1    1356999999999864

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.96  E-value=0.12  Score=59.91  Aligned_cols=123  Identities=12%  Similarity=-0.028  Sum_probs=72.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCH-------------------------------------HH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQNA-------------------------------------VY   50 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-~p~~~-------------------------------------~a   50 (556)
                      .+|+.+-.|.+.-....+.++.++|.+.+++||.. ++...                                     ..
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence            35666777777777777888888888888888854 33321                                     12


Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKA  128 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~  128 (556)
                      +..|..+|.+.+++++|.+.++.-++..-+....|..+|..++++++-++|...+.+||+.-|.  +.+.....+++..+
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            3334444555555555555555555555555556666666666666666666666666666555  34444444544444


Q ss_pred             Hhh
Q 008730          129 VKK  131 (556)
Q Consensus       129 ~~~  131 (556)
                      .|.
T Consensus      1613 ~GD 1615 (1710)
T KOG1070|consen 1613 YGD 1615 (1710)
T ss_pred             cCC
Confidence            443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.94  E-value=0.046  Score=44.19  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhh
Q 008730           66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKK  131 (556)
Q Consensus        66 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~  131 (556)
                      ..+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++  ..+...+-.+...+|.
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            35778899999999999999999999999999999999999999998866  6677777777777775

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.92  E-value=0.19  Score=43.23  Aligned_cols=85  Identities=14%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHHhh---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           47 NAVYYANRAFAHTKLE---EYGSAIQDASKAIE-IDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~-l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      ..+..+++|-++.+..   +..+.+..++..++ -+|. .-+..|.+|..++++++|+.|+.+.+..++..|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3566788888887764   46778999999996 4554 46688999999999999999999999999999999999877


Q ss_pred             HHHHHHHHhh
Q 008730          122 VKECEKAVKK  131 (556)
Q Consensus       122 l~~~~~~~~~  131 (556)
                      ...+...+.+
T Consensus       111 k~~ied~itk  120 (149)
T KOG3364|consen  111 KETIEDKITK  120 (149)
T ss_pred             HHHHHHHHhh
Confidence            7766655443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.90  E-value=0.081  Score=52.84  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----N------AVYYANRAFAHTKLEEYGSAIQDASKAIEID----   78 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----   78 (556)
                      ..+.+..+|..+....|+++|+-+..+|.++-.+    +      ..+++.++.++..+|+.-+|.++++++.++.    
T Consensus       161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG  240 (518)
T ss_pred             eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence            3577889999999999999999999999988432    2      3456778889999999999999999998762    


Q ss_pred             --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           79 --PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        79 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                        +-.......+|.+|...|+.+.|..-|+.|....
T Consensus       241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence              3346678889999999999999999999998764

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.016  Score=57.72  Aligned_cols=118  Identities=26%  Similarity=0.423  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS-----------Q--------NAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p-----------~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      .+...+.|...++.++|+.|..-|.++++.-.           +        -...+.+++.+-.+.+.+..|+.....+
T Consensus       222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~  301 (372)
T KOG0546|consen  222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA  301 (372)
T ss_pred             hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence            34455678889999999999999999987521           1        1234567888889999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        75 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++.+++...+++.++..+..+.++++|++.++.+....|++......+..+.....+
T Consensus       302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~  358 (372)
T KOG0546|consen  302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ  358 (372)
T ss_pred             cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999998887777766555444

>smart00028 TPR Tetratricopeptide repeats

Probab=95.84  E-value=0.015  Score=35.66  Aligned_cols=30  Identities=37%  Similarity=0.444  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDP   79 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p   79 (556)
                      ++..+|.++..++++++|+..++++++.+|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.84  E-value=0.015  Score=35.73  Aligned_cols=32  Identities=38%  Similarity=0.781  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      .+++.+|.++..++++++|+..+++++++.|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35666666666677777777777666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.83  E-value=0.1  Score=45.28  Aligned_cols=116  Identities=26%  Similarity=0.373  Sum_probs=82.5

Q ss_pred             ceEeccCCC--CHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          295 FTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       295 i~vigDiHG--~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      +.|+||+|=  ...+|-.-|++.=.|..-.+++++|++.     |.|++++|..+.    +.++++||--|.-       
T Consensus         3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-------   66 (183)
T KOG3325|consen    3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-------   66 (183)
T ss_pred             EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc-------
Confidence            679999993  4455655566655666666799999976     789999998875    7899999976553       


Q ss_pred             chhhHHhhhhHHHHHHHHHHhccccccccc--C-CeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC
Q 008730          373 FEGEVRSKLSETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP  449 (556)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i--~-~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~  449 (556)
                                           ...|..-++  + =++-|+||-.                           -+=|+||  
T Consensus        67 ---------------------~~yP~~kvvtvGqfkIG~chGhq---------------------------ViP~gd~--   96 (183)
T KOG3325|consen   67 ---------------------LKYPENKVVTVGQFKIGLCHGHQ---------------------------VIPWGDP--   96 (183)
T ss_pred             ---------------------ccCCccceEEeccEEEEeecCcE---------------------------eecCCCH--
Confidence                                 123333222  2 2788899854                           1236664  


Q ss_pred             CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCce
Q 008730          450 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE  493 (556)
Q Consensus       450 ~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~  493 (556)
                                       +.+.-.-+..+++.++-||+...+-|+
T Consensus        97 -----------------~sL~~LaRqldvDILl~G~Th~f~Aye  123 (183)
T KOG3325|consen   97 -----------------ESLALLARQLDVDILLTGHTHKFEAYE  123 (183)
T ss_pred             -----------------HHHHHHHHhcCCcEEEeCCceeEEEEE
Confidence                             466666778899999999999877776

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.12  Score=55.24  Aligned_cols=96  Identities=25%  Similarity=0.251  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .+++-|...++..+|..+++.|...+..-|.+      +....+++.||..+.+.+.|.++++.|-+.+|.++-..+..-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            45677888899999999999999999988775      456778899999999999999999999999999988888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 008730           90 AAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      .+...-+.-++|+....+....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            8888889999999888877665

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.73  E-value=0.075  Score=56.96  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=88.1

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHH
Q 008730           26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRGAAYLAMGKFKEA  101 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~~A  101 (556)
                      ...+.+.|.+.+....+..|+.+-.++..|..+...|+.++|++.|++++......    .-.++.+|.++..+.+|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            34577888899999999999999889999999999999999999999888533322    34688899999999999999


Q ss_pred             HHHHHHHHHhCCCCHHH-HHHHHHHHHHHhhh----h-HHHHhcCCCCC
Q 008730          102 LKDFQQVKKLSPNDPDA-AQKVKECEKAVKKL----K-FEEAIAVPESE  144 (556)
Q Consensus       102 ~~~~~~al~l~p~~~~~-~~~l~~~~~~~~~~----~-~~~Ai~~~~~~  144 (556)
                      ..++.+..+.+.-.... .+..|.|+..+++.    . .++|.+++.+.
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            99999988876543333 34445566666653    1 25666655543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]

Probab=95.72  E-value=0.014  Score=61.16  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=49.3

Q ss_pred             CcceEeccCC-C------------CHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhcc-ccC--CCeEE
Q 008730          293 KHFTVCGDVH-G------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK-CMC--PSAIY  356 (556)
Q Consensus       293 ~~i~vigDiH-G------------~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk-~~~--p~~v~  356 (556)
                      +||..++|+| |            .+..|..+++.+.-. ..|-+|.-||+.|++.-|.+++..+...- ...  .=.||
T Consensus         1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~   79 (390)
T COG0420           1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVV   79 (390)
T ss_pred             CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEE
Confidence            3688899999 4            233444444444322 34679999999999988887776554432 111  23699


Q ss_pred             Eeccccccccc
Q 008730          357 LSRGNHESKSM  367 (556)
Q Consensus       357 ~lrGNHE~~~~  367 (556)
                      +|.||||...-
T Consensus        80 ~I~GNHD~~~~   90 (390)
T COG0420          80 VIAGNHDSPSR   90 (390)
T ss_pred             EecCCCCchhc
Confidence            99999997653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.65  E-value=0.11  Score=55.57  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PK   83 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~   83 (556)
                      .-|+.+-.++..|..+...|+.++|++.|++++.....    ..-.++.+|-++.-+.+|++|..++.+..+.+.-. .-
T Consensus       262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~  341 (468)
T PF10300_consen  262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF  341 (468)
T ss_pred             hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence            34667777888999999999999999999998864433    23457788999999999999999999998875432 34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           84 GYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      ..|..|.|+...++.+.+.+.-++|.++
T Consensus       342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l  369 (468)
T PF10300_consen  342 YAYLAAACLLMLGREEEAKEHKKEAEEL  369 (468)
T ss_pred             HHHHHHHHHHhhccchhhhhhHHHHHHH
Confidence            5566788999999887666666666544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.081  Score=52.34  Aligned_cols=133  Identities=12%  Similarity=0.046  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      |...-++.---.+++..|+...-...+++.+-. +|+.   ....-.++.++.+.|-|++|.+..+++++++|.+..+..
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence            444444555556778889999999999999887 5555   445556788899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      .++.++.-.++++++.+...+.-..=..  .-.+++....+...+....+++|++++..
T Consensus       214 a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  214 AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            9999999999999999988765322111  11233333444444444558888887763

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.30  E-value=0.43  Score=48.84  Aligned_cols=122  Identities=17%  Similarity=0.119  Sum_probs=100.1

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCC---
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPR---   80 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~---   80 (556)
                      ....+..|...+....+.|.++.|...+.++...++.    .+.+....+..+...|+..+|+..++..+..  ...   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            3456788999999999999999999999999987632    4677888899999999999999999888871  100   


Q ss_pred             -----------------------------ChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           81 -----------------------------YPKGYYRRGAAYLAM------GKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        81 -----------------------------~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                                                   ...++..+|......      +..+++++.|+++.+++|+...++..++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                         135677777777777      889999999999999999999999999988


Q ss_pred             HHHHhh
Q 008730          126 EKAVKK  131 (556)
Q Consensus       126 ~~~~~~  131 (556)
                      +..+-.
T Consensus       302 ~~~~~~  307 (352)
T PF02259_consen  302 NDKLLE  307 (352)
T ss_pred             HHHHHH
Confidence            766543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.22  E-value=0.026  Score=52.89  Aligned_cols=61  Identities=23%  Similarity=0.440  Sum_probs=56.8

Q ss_pred             HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        57 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                      ...+.++.+.|.+.|.+++.+-|+....|+++|....+.|+.+.|.+.|++.++++|++..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4456789999999999999999999999999999999999999999999999999998754

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.22  E-value=0.0047  Score=61.04  Aligned_cols=80  Identities=23%  Similarity=0.343  Sum_probs=71.0

Q ss_pred             HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 008730           58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA  137 (556)
Q Consensus        58 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~A  137 (556)
                      .+..|.++.|++.|..++.++|.....|-.++.++..+++...|+..|..|++++|+...-+...+.+...++.  +++|
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e~a  201 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WEEA  201 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc--hHHH
Confidence            45678899999999999999999999999999999999999999999999999999998888888888777777  4555


Q ss_pred             hc
Q 008730          138 IA  139 (556)
Q Consensus       138 i~  139 (556)
                      -.
T Consensus       202 a~  203 (377)
T KOG1308|consen  202 AH  203 (377)
T ss_pred             HH
Confidence            33

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.22  E-value=0.34  Score=43.36  Aligned_cols=85  Identities=15%  Similarity=0.144  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      ..+.....+-...++.+++...+...-.+.|..++.-..-|..+...|++.+|+..++.+.+..|..+.+...++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34555666667788999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhhhh
Q 008730          129 VKKLK  133 (556)
Q Consensus       129 ~~~~~  133 (556)
                      ++...
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            88754

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.20  E-value=0.57  Score=48.13  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhC
Q 008730           12 SRAEELKALANEAFR---AKKYSQAIDLYSQA-IELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEID   78 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~---~g~~~~Al~~~~~a-l~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~   78 (556)
                      +.....+..|-++-+   .|+.++|+..+..+ ....+.+++.+..+|.+|-.+         ...++|+.+|+++.+++
T Consensus       177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            344556677777777   89999999999884 445667888888888877543         24788999999999988


Q ss_pred             CCChHHHHHHHHHHHHcCC
Q 008730           79 PRYPKGYYRRGAAYLAMGK   97 (556)
Q Consensus        79 p~~~~~~~~lg~~~~~~g~   97 (556)
                      |+. ..=.|++.++...|.
T Consensus       257 ~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  257 PDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             ccc-cchHHHHHHHHHcCC
Confidence            643 233444444444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.92  E-value=0.12  Score=54.75  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=91.7

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      .+.+...+..-+..+..+|+..+|+.++..++...|...  .++..+|.++.+.|...+|--.+..|+.-.|.....++.
T Consensus       209 ~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~  288 (886)
T KOG4507|consen  209 NTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYT  288 (886)
T ss_pred             CchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccccccee
Confidence            344444444444455678999999999999999988754  467889999999999999999999999888887888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      +|.++..++++.....+|..+.+.+|....+.
T Consensus       289 l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~  320 (886)
T KOG4507|consen  289 LGNIYAMLGEYNHSVLCYDHALQARPGFEQAI  320 (886)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence            99999999999999999999999999765443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.78  E-value=0.34  Score=37.65  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHhhCHHHHHHHHHHHHHh
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR---AFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~l---g~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      +.+....+.|..++.+.+.++|+..++++++..++....+..+   ..+|...|+|++++++.-+-+.+
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456678889999999999999999999999988877665555   46788899999988877665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.71  E-value=0.037  Score=57.15  Aligned_cols=82  Identities=15%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-L--------NS---------QNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~-~--------~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      ..-.|.++|.++++.|.|.-+..+|.+|++ .        .|         ..-+..++.|..|...|+.-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            445678999999999999999999999996 1        12         24578999999999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHH
Q 008730           75 IEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        75 l~l~p~~~~~~~~lg~~~~~   94 (556)
                      ++..-.+|..|.++|.|-..
T Consensus       362 v~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHH
Confidence            99999999999999987653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.70  E-value=0.47  Score=41.76  Aligned_cols=87  Identities=13%  Similarity=-0.011  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      ....+.+.........+.+++...+...--+.|+.++.-..-|..++..|++.+|+..++.+..-.+..+.+.-.++.|+
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL   88 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL   88 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence            34556666666677888888888888777788888888888888888888888888888888877777777777788888


Q ss_pred             HHcCCHH
Q 008730           93 LAMGKFK   99 (556)
Q Consensus        93 ~~~g~~~   99 (556)
                      +.+|+.+
T Consensus        89 ~al~Dp~   95 (153)
T TIGR02561        89 NAKGDAE   95 (153)
T ss_pred             HhcCChH
Confidence            8888754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.65  E-value=0.6  Score=49.78  Aligned_cols=106  Identities=18%  Similarity=0.050  Sum_probs=82.4

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH-HHHhCCCChHHHHHH------HHHH
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK-AIEIDPRYPKGYYRR------GAAY   92 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~l------g~~~   92 (556)
                      +...+...++...|......++..+|++..+..++|.+....|....++..+.+ +....|++......+      +..+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            566666778888888888888888999988988888888777766555555544 888888887766655      7777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      ..+++..++...++++..+.|+++.+...+...
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            888888888888899998888887766665555

>COG1768 Predicted phosphohydrolase [General function prediction only]

Probab=94.61  E-value=0.056  Score=48.50  Aligned_cols=45  Identities=29%  Similarity=0.301  Sum_probs=33.1

Q ss_pred             CCCCCeeeecccc--cCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730          319 SEENPYLFNGDFV--DRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  367 (556)
Q Consensus       319 ~~~~~~vflGD~v--drG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~  367 (556)
                      ...|.++.-||+-  =|=+...+=+.+|-+|    |+.-+++|||||.+.-
T Consensus        42 ~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~   88 (230)
T COG1768          42 SPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWS   88 (230)
T ss_pred             ChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccc
Confidence            3456688889985  3455666667777655    7889999999998753

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.59  E-value=0.56  Score=49.20  Aligned_cols=114  Identities=18%  Similarity=0.113  Sum_probs=75.0

Q ss_pred             CCChhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-
Q 008730            8 NSSVSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-   80 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-   80 (556)
                      ......+..++..|...-+    ..+..+....+-+.+...+.+  ..+...+|.|..++|+.++|++.++..++..|. 
T Consensus       213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~  292 (539)
T PF04184_consen  213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL  292 (539)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence            3445667777666655433    223333333333333333333  456677889999999999999999999887775 


Q ss_pred             -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 008730           81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQK  121 (556)
Q Consensus        81 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~  121 (556)
                       +..++.++..++..++.|.++.+.+.+.-++. |+.+...+.
T Consensus       293 ~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT  335 (539)
T PF04184_consen  293 DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT  335 (539)
T ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence             46688899999999999999988888864432 444444333

The molecular function of this protein is uncertain.

>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A

Probab=94.39  E-value=0.032  Score=52.26  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=42.1

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHH--------------------------HHHHh
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI--------------------------LTLFA  346 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l--------------------------~~l~~  346 (556)
                      ++|..++|.||+++.|.++.+.+.-. ..|-+||+||++-.+..+-|-.                          .++..
T Consensus         6 ~kilA~s~~~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~   84 (255)
T PF14582_consen    6 RKILAISNFRGDFELLERLVEVIPEK-GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRI   84 (255)
T ss_dssp             -EEEEEE--TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHH
T ss_pred             hhheeecCcchHHHHHHHHHhhcccc-CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHH
Confidence            46999999999999999988766433 3456999999986544333322                          23333


Q ss_pred             ccccCCCeEEEecccccccc
Q 008730          347 FKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       347 lk~~~p~~v~~lrGNHE~~~  366 (556)
                      | -..+--++.|+||||...
T Consensus        85 L-~~~~~p~~~vPG~~Dap~  103 (255)
T PF14582_consen   85 L-GELGVPVFVVPGNMDAPE  103 (255)
T ss_dssp             H-HCC-SEEEEE--TTS-SH
T ss_pred             H-HhcCCcEEEecCCCCchH
Confidence            3 344567889999999854

>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain

Probab=94.25  E-value=0.051  Score=54.03  Aligned_cols=65  Identities=22%  Similarity=0.322  Sum_probs=38.8

Q ss_pred             cceEeccCCCCH----------------HHHHHHHHhcCCCCCCCCeee-ecccccCCCCh-----------HHHHHHHH
Q 008730          294 HFTVCGDVHGQF----------------YDLLNIFELNGLPSEENPYLF-NGDFVDRGSFS-----------VEVILTLF  345 (556)
Q Consensus       294 ~i~vigDiHG~~----------------~~l~~~l~~~~~~~~~~~~vf-lGD~vdrG~~s-----------~e~l~~l~  345 (556)
                      +|+.++|+||++                ..+..++++..-... +.+++ .||+++..+.+           ..++..+-
T Consensus         2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~-~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln   80 (277)
T cd07410           2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENP-NTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN   80 (277)
T ss_pred             eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCC-CeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence            378899999986                335556665543322 32333 69999876522           23455554


Q ss_pred             hccccCCCeEEEecccccc
Q 008730          346 AFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       346 ~lk~~~p~~v~~lrGNHE~  364 (556)
                      .+.   ++  ++..||||.
T Consensus        81 ~~g---~d--~~~lGNHe~   94 (277)
T cd07410          81 ALG---YD--AGTLGNHEF   94 (277)
T ss_pred             hcC---CC--EEeecccCc
Confidence            443   22  444699995

CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.20  E-value=0.73  Score=42.41  Aligned_cols=63  Identities=13%  Similarity=0.063  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      .++..+|.-|.+.|++++|++.|.++.......   ...++++-.+....+++.....+..+|-.+
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            455566666666666666666666655443221   345555555666666666666666666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.18  E-value=0.3  Score=47.46  Aligned_cols=77  Identities=22%  Similarity=0.318  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      ....++=.++.+.++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-......
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34555667788889999999999999999999999999999999999999999999999999999998876555544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.18  E-value=0.66  Score=47.66  Aligned_cols=116  Identities=13%  Similarity=0.066  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHH-HHhCCCChHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTK---LEEYGSAIQDASKA-IEIDPRYPKGY   85 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~----~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~a-l~l~p~~~~~~   85 (556)
                      +....++-..|....+|+.-+...+..-.+    -++.....+.+|.++.+   .|+.++|++.+..+ ....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            445556666788888998888888776665    45567778888999988   89999999999884 45566788899


Q ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           86 YRRGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        86 ~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      ..+|.+|...         ...++|+..|.++.+++|+. ..=.+++.++...|
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAG  273 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcC
Confidence            9999988643         24678999999999998653 33334444444433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.16  E-value=0.35  Score=47.02  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      +-..++=..+...++++.|+.+.++.+.++|.++.-+.-+|.+|.++|.+.-|+.+++..++..|+.+.+-.-.+...
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            344456677889999999999999999999999999999999999999999999999999999999988776655443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.14  E-value=0.12  Score=50.60  Aligned_cols=89  Identities=8%  Similarity=0.039  Sum_probs=76.8

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           37 YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR-RGAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        37 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      |.++....|+++..|...+.-..+.|.|.+--..|.++++.+|.+++.|.. -+.-+...++.+.|++.+.++++.+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555678899999999988888899999999999999999999999987 4556778899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 008730          116 PDAAQKVKEC  125 (556)
Q Consensus       116 ~~~~~~l~~~  125 (556)
                      +..|...-+.
T Consensus       176 p~iw~eyfr~  185 (435)
T COG5191         176 PRIWIEYFRM  185 (435)
T ss_pred             chHHHHHHHH
Confidence            9888665544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=1  Score=43.36  Aligned_cols=114  Identities=16%  Similarity=0.141  Sum_probs=97.8

Q ss_pred             HHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730           18 KALANEAF-RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (556)
Q Consensus        18 ~~lg~~~~-~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   95 (556)
                      +...++.+ +...-+.|+..-..++.++|.+...|..+-.++..++ +..+-++++...++-+|+|..+|..+-.+....
T Consensus        46 m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l  125 (318)
T KOG0530|consen   46 MDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELL  125 (318)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence            33344444 4455677999999999999999999999888887765 578889999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           96 GKFK-EALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        96 g~~~-~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      |+.. .-++..+.++..+.+|-.+|.....+....+.
T Consensus       126 ~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~  162 (318)
T KOG0530|consen  126 GDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD  162 (318)
T ss_pred             cCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence            9988 88999999999999999999999988887776

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.89  E-value=0.45  Score=54.78  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCCChHHHH
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      +....++++..+.|++|+..|++.-.-.|..   -++.+..|.+.....       .+++|+..|++. .-.|.-|--|.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  556 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYL  556 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHH
Confidence            3445678889999999999999999999875   467788888877642       366777777663 34566677889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      ..|.+|.++|+++|-+++|..|++..|.+|..-...-
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            9999999999999999999999999999876544333

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.75  E-value=1.6  Score=43.45  Aligned_cols=111  Identities=18%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCCC
Q 008730           14 AEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRY   81 (556)
Q Consensus        14 a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~-~~a~~~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~   81 (556)
                      +.+.+.+|..+..    ..|..+|...|++|.+..-.. ..+...+|.+|..-.       +...|+..|.++....  +
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~  186 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N  186 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence            4456667777765    457788888888877765443 344666676665531       2336777777776665  5


Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        82 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      +.+.+.+|.+|..    ..++++|..+|.+|-+...  ..+...++ ++...
T Consensus       187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~  235 (292)
T COG0790         187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLN  235 (292)
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhc
Confidence            6777777777754    3367788888888877765  66666666 44333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.69  E-value=0.78  Score=39.61  Aligned_cols=80  Identities=14%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           13 RAEELKALANEAFRAK---KYSQAIDLYSQAIE-LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g---~~~~Al~~~~~al~-~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +.+..++++.++....   +..+.+.+++..++ ..|.. -+..+.++..++++++|+.|+.+++..++.+|+|..+.-.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4566778888887665   45668999999997 45543 4677889999999999999999999999999999887665


Q ss_pred             HHHHH
Q 008730           88 RGAAY   92 (556)
Q Consensus        88 lg~~~   92 (556)
                      .-.+.
T Consensus       111 k~~ie  115 (149)
T KOG3364|consen  111 KETIE  115 (149)
T ss_pred             HHHHH
Confidence            44443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.68  E-value=0.77  Score=45.06  Aligned_cols=59  Identities=17%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ  107 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  107 (556)
                      +.-..-+.-....|++.+|...+..+++.+|++.++...++.+|...|+.++|...+..
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            33455666788899999999999999999999999999999999999999877666653

>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]

Probab=93.64  E-value=0.12  Score=53.06  Aligned_cols=57  Identities=23%  Similarity=0.355  Sum_probs=37.6

Q ss_pred             HHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCC----CeEEEecccccc
Q 008730          308 LLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHES  364 (556)
Q Consensus       308 l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p----~~v~~lrGNHE~  364 (556)
                      |.+.+...-+.-..+.++||||++|-|...  -|--.....++..+|    ..++.+.||||-
T Consensus        81 lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI  143 (410)
T KOG3662|consen   81 LRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI  143 (410)
T ss_pred             HHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence            445666555555556799999999998764  233334444443333    478888999996

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.64  E-value=0.77  Score=50.41  Aligned_cols=113  Identities=18%  Similarity=0.138  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHh
Q 008730           13 RAEELKALANEAFR-----AKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIEI   77 (556)
Q Consensus        13 ~a~~~~~lg~~~~~-----~g~~~~Al~~~~~al~~-----~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~l   77 (556)
                      .+.+...+|.+++.     .+|.+.|+.+|+.+.+-     .-.++.+.+.+|.+|.+..     +++.|+..|.++...
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            44555666666653     46899999999999771     1225667888999998843     678899999999877


Q ss_pred             CCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           78 DPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        78 ~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      .  ++.+.+.+|.++..-.   ++..|.++|..|.+.  .+..+...++.|+..-
T Consensus       323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence            5  5678999999998766   578999999988765  5788889999888653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=2.8  Score=40.13  Aligned_cols=129  Identities=19%  Similarity=0.131  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------h
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------P   82 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~   82 (556)
                      +.++-..|..+.....+.++..+|++|..+.     |+.+..-...+.-..+..+.++|++.|++++.+--..      .
T Consensus        71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~  150 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF  150 (308)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            4555566667777888999999999999874     4444444455555667888999999999998763221      4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQQVKK----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +.+-..+.+|.+...+++|-..+.+-..    .+..+......++.+.-.+-..+|..|-..+.
T Consensus       151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r  214 (308)
T KOG1585|consen  151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR  214 (308)
T ss_pred             HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            4566778889999999998877766433    33344444555666555555555666655554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.61  E-value=1.3  Score=47.76  Aligned_cols=127  Identities=15%  Similarity=0.141  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----------
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----------   79 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p----------   79 (556)
                      -..|..+|..|-..|+.+.|...|++|++..-..    +..|..-|..-++..+++.|+...++|...-.          
T Consensus       387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~  466 (835)
T KOG2047|consen  387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS  466 (835)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence            4568888999999999999999999998876332    57788888888888889999998888875421          


Q ss_pred             --------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           80 --------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        80 --------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                              ++...|..++......|=++.-...|++.+.+.--.|....+.+..+..-..  ++++.+.++
T Consensus       467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~y--feesFk~YE  535 (835)
T KOG2047|consen  467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKY--FEESFKAYE  535 (835)
T ss_pred             CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHH--HHHHHHHHH
Confidence                    1245777778888888888888888999998887778887777776655443  566655555

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.58  E-value=1.5  Score=44.58  Aligned_cols=91  Identities=8%  Similarity=0.034  Sum_probs=75.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730           35 DLYSQAIELNSQNAVYYANRAFAHTKLEE------------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        35 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      ..|++.++.+|.+..+|..+....-..-.            .+..+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788899999999999998865544422            566788999999999999998888888888999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHH
Q 008730          103 KDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus       103 ~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      +-+++++..+|++...|..+-..
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHH
Confidence            99999999999988877654443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.54  E-value=0.54  Score=48.59  Aligned_cols=59  Identities=14%  Similarity=0.092  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK   73 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   73 (556)
                      .......|..++.+|+|.++.-+-.-..+.+| ++.++..+|.|++..++|++|..++..
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            44455566667777777777777777777777 677777777777777777777777654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.47  E-value=0.18  Score=33.64  Aligned_cols=29  Identities=31%  Similarity=0.523  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIEL   43 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~   43 (556)
                      .++.++|..|...|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34455555555555555555555555543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.18  E-value=0.99  Score=42.91  Aligned_cols=91  Identities=19%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             HHccCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHhhC-------HHHHHHHHHHHHHhCCC------ChHH
Q 008730           25 FRAKKYSQAIDLYSQAIELN-----SQN--AVYYANRAFAHTKLEE-------YGSAIQDASKAIEIDPR------YPKG   84 (556)
Q Consensus        25 ~~~g~~~~Al~~~~~al~~~-----p~~--~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p~------~~~~   84 (556)
                      .....+++|++.|.-|+-..     +..  +..+..+|=+|..+++       +..|++.|++|++....      ....
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            34567889999888887542     222  4456666777777777       45567777777665432      2568


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      .+.+|.+..+.|++++|+.+|.+++...-..
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            8999999999999999999999999875433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.17  E-value=0.2  Score=33.32  Aligned_cols=27  Identities=26%  Similarity=0.188  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIE   76 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~   76 (556)
                      ++.++|.+|...|++++|+..+++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344455555555555555555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.15  E-value=0.62  Score=51.44  Aligned_cols=97  Identities=15%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAI----------ELNSQ----------NAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al----------~~~p~----------~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      ..|++.|..+...+|.+.|+++|+++-          ..+|.          +...|..-|..+...|+.+.|+..|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            568888999999999999999999853          22343          4566777788888899999999999887


Q ss_pred             HHh---------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           75 IEI---------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        75 l~l---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      -.-                     ...+-.+.|.+|..|...|+..+|+..|.+|-..
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            432                     3456789999999999999999999999887554

>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain

Probab=93.07  E-value=0.096  Score=52.42  Aligned_cols=67  Identities=22%  Similarity=0.326  Sum_probs=43.8

Q ss_pred             cceEeccCCCCHHH--------------HHHHHHhcCCCCCCCCeeeecccccCCCC-h-----HHHHHHHHhccccCCC
Q 008730          294 HFTVCGDVHGQFYD--------------LLNIFELNGLPSEENPYLFNGDFVDRGSF-S-----VEVILTLFAFKCMCPS  353 (556)
Q Consensus       294 ~i~vigDiHG~~~~--------------l~~~l~~~~~~~~~~~~vflGD~vdrG~~-s-----~e~l~~l~~lk~~~p~  353 (556)
                      +|+.+.|+||++..              +..+++..........++..||++...+. +     ..++..+-++..    
T Consensus         2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~----   77 (288)
T cd07412           2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV----   77 (288)
T ss_pred             eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC----
Confidence            37889999998553              66666665543344568899999987654 2     245555555542    


Q ss_pred             eEEEeccccccc
Q 008730          354 AIYLSRGNHESK  365 (556)
Q Consensus       354 ~v~~lrGNHE~~  365 (556)
                      .+ +..||||.-
T Consensus        78 Da-~t~GNHefd   88 (288)
T cd07412          78 DA-SAVGNHEFD   88 (288)
T ss_pred             ee-eeecccccc
Confidence            33 345999953

YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.97  E-value=3.4  Score=42.98  Aligned_cols=36  Identities=11%  Similarity=0.123  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHH
Q 008730           14 AEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAV   49 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~-~~~Al~~~~~al~~~p~~~~   49 (556)
                      +..+..-|..+.+.|. -++|+..++.+++..|.+..
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~e  415 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIE  415 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHH
Confidence            4556667777788887 77788888888888777653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.95  E-value=2.4  Score=43.07  Aligned_cols=105  Identities=7%  Similarity=-0.016  Sum_probs=81.7

Q ss_pred             CCCChhHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKK------------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~------------~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      ..++|.++++|..+....-..-.            .+..+..|++||+.+|++...+..+-.+..+..+-++..+-++++
T Consensus        12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~   91 (321)
T PF08424_consen   12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEEL   91 (321)
T ss_pred             HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            35678888888888765544322            566788999999999999999998888888888999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 008730           75 IEIDPRYPKGYYRRGAAYLA---MGKFKEALKDFQQVKKL  111 (556)
Q Consensus        75 l~l~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l  111 (556)
                      +..+|.++..|...-.....   .-.+++....|.++++.
T Consensus        92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            99999998877655443322   33577888888887775

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.76  E-value=1.8  Score=46.74  Aligned_cols=128  Identities=13%  Similarity=0.079  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--C---hHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--Y---PKGYYR   87 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~---~~~~~~   87 (556)
                      ....|...+...-..|-++.....|++.+++.--.|..-.|.|..+....-+++|.+.|++.+.+.+-  -   +..|..
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt  555 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT  555 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence            34567777888888899999999999999999999999999999999999999999999999998652  2   334555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ....-+.--..+.|...|++||+..|..  ...+...+......|-  ...|++.++
T Consensus       556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GL--ar~amsiye  610 (835)
T KOG2047|consen  556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGL--ARHAMSIYE  610 (835)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhH--HHHHHHHHH
Confidence            5555555567899999999999988832  1223344444444433  344444444

>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain

Probab=92.72  E-value=0.16  Score=50.47  Aligned_cols=71  Identities=23%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             cceEeccCCCC--H--HHHHHHHHhcCCCCCCCCeeeecccc-cCCCChH------HHHHHHHhccccCCCeEEEecccc
Q 008730          294 HFTVCGDVHGQ--F--YDLLNIFELNGLPSEENPYLFNGDFV-DRGSFSV------EVILTLFAFKCMCPSAIYLSRGNH  362 (556)
Q Consensus       294 ~i~vigDiHG~--~--~~l~~~l~~~~~~~~~~~~vflGD~v-drG~~s~------e~l~~l~~lk~~~p~~v~~lrGNH  362 (556)
                      +++++||.=..  .  ..+.+.+.........+-+|++||+| +-|..+.      +.+..++... ...--++.+.|||
T Consensus         2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~-~~~~P~~~v~GNH   80 (277)
T cd07378           2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAP-SLQVPWYLVLGNH   80 (277)
T ss_pred             eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccch-hhcCCeEEecCCc
Confidence            47899997653  1  23333333222112335699999997 5554221      2333332211 1234689999999


Q ss_pred             ccc
Q 008730          363 ESK  365 (556)
Q Consensus       363 E~~  365 (556)
                      |..
T Consensus        81 D~~   83 (277)
T cd07378          81 DYS   83 (277)
T ss_pred             ccC
Confidence            976

Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma

>PLN02533 probable purple acid phosphatase

Probab=92.67  E-value=0.12  Score=54.64  Aligned_cols=70  Identities=16%  Similarity=0.182  Sum_probs=38.9

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChH--H-HHHHHHhccccCCCeEEEecccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--E-VILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~--e-~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      -+++|+||+|-. ......++.+... .-+-+|++||+++-+....  + -..++..+....  -++.+.||||...
T Consensus       140 ~~f~v~GDlG~~-~~~~~tl~~i~~~-~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~--P~m~~~GNHE~~~  212 (427)
T PLN02533        140 IKFAVSGDLGTS-EWTKSTLEHVSKW-DYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQR--PWMVTHGNHELEK  212 (427)
T ss_pred             eEEEEEEeCCCC-cccHHHHHHHHhc-CCCEEEEcCccccccchHHHHHHHHHHhhhHhhcC--ceEEeCccccccc
Confidence            368999999532 2122233333222 3456999999997543321  1 122222222233  3778899999864

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.49  E-value=1.8  Score=38.13  Aligned_cols=83  Identities=12%  Similarity=0.066  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +.....+-...++.+++...+...--+.|+.++.-..-|.++...|+|.+|+..++...+-.+..+.....++.|+..++
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33344444558899999999998888999999999999999999999999999999999988888999999999999888


Q ss_pred             hhh
Q 008730          131 KLK  133 (556)
Q Consensus       131 ~~~  133 (556)
                      .-.
T Consensus        93 Dp~   95 (153)
T TIGR02561        93 DAE   95 (153)
T ss_pred             ChH
Confidence            754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.25  E-value=5.9  Score=39.29  Aligned_cols=103  Identities=13%  Similarity=0.051  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHhhCHH---HHHHHHH
Q 008730           11 VSRAEELKALANEAFRAK-KYSQAIDLYSQAIEL----NSQ---N-------AVYYANRAFAHTKLEEYG---SAIQDAS   72 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~----~p~---~-------~~a~~~lg~~~~~~g~~~---~A~~~~~   72 (556)
                      ..-++.+++.|...+..+ ++++|...+++|.++    .+.   .       ...+..++.+|...+.++   +|....+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            455788899999999999 999999999999988    221   1       345777888888877654   4555555


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        73 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      .+-.-.|+.+..++..=.++.+.++.+++.+.+.+++.--+
T Consensus       112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            55556677777775555566668999999999999998755

It is also involved in sporulation [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.12  E-value=6.5  Score=36.38  Aligned_cols=88  Identities=19%  Similarity=0.055  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECE  126 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~  126 (556)
                      -..++..+...+++++|+..++.++..-.+.   .-+-.++|.++..+|++++|++.+...-.  +.. +......|.++
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil  169 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence            4567888999999999999999998554332   44678899999999999999998875421  111 22345667777


Q ss_pred             HHHhhhhHHHHhcCCC
Q 008730          127 KAVKKLKFEEAIAVPE  142 (556)
Q Consensus       127 ~~~~~~~~~~Ai~~~~  142 (556)
                      ...|+.  ++|...++
T Consensus       170 l~kg~k--~~Ar~ay~  183 (207)
T COG2976         170 LAKGDK--QEARAAYE  183 (207)
T ss_pred             HHcCch--HHHHHHHH
Confidence            777763  44444333

>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain

Probab=92.11  E-value=0.21  Score=49.04  Aligned_cols=65  Identities=20%  Similarity=0.216  Sum_probs=41.0

Q ss_pred             cceEeccCCCCH----------HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEe
Q 008730          294 HFTVCGDVHGQF----------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLS  358 (556)
Q Consensus       294 ~i~vigDiHG~~----------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~l  358 (556)
                      +|+-++|+||++          ..+..++++..-. ....++..||+++..+.+     ..++..+-.+.    -.+ +.
T Consensus         2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~d~-~~   75 (257)
T cd07408           2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----YDA-VT   75 (257)
T ss_pred             EEEEeccCcccccCCCCccccHHHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----CcE-Ec
Confidence            478899999985          3455666655433 345688999999876543     23444443332    233 34


Q ss_pred             cccccc
Q 008730          359 RGNHES  364 (556)
Q Consensus       359 rGNHE~  364 (556)
                      .||||.
T Consensus        76 ~GNHef   81 (257)
T cd07408          76 PGNHEF   81 (257)
T ss_pred             cccccc
Confidence            699995

SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.99  E-value=0.66  Score=51.16  Aligned_cols=117  Identities=32%  Similarity=0.466  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--hhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTK--LEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      ..+......|+..+..++|.+|..-|..++.+-|.+    +....+.+.|++.  +++|.+++..+.-|+...|....++
T Consensus        51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L  130 (748)
T KOG4151|consen   51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL  130 (748)
T ss_pred             HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence            345667788999999999999999999999998843    4556677777766  5689999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      +.++.+|...+..+-|++.+.-.....|.+..+.....+.+..
T Consensus       131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            9999999999999999999888888999997766544444433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.85  E-value=2.6  Score=43.58  Aligned_cols=82  Identities=13%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             HHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------------CC------------CC---hHHHHHHHHH
Q 008730           41 IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------DP------------RY---PKGYYRRGAA   91 (556)
Q Consensus        41 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------~p------------~~---~~~~~~lg~~   91 (556)
                      ++.+|-+.+++..++.++.++|+++.|.+.+++|+-.              ++            .|   ..++++....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            4568889999999999999999998888888888622              11            11   3477777888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPN-DPDAAQKV  122 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l  122 (556)
                      +.+.|-+..|.++.+-.+.++|. |+-.....
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~  144 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF  144 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence            88999999999999999999998 65543333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.78  E-value=0.35  Score=50.69  Aligned_cols=82  Identities=22%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             HHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHH
Q 008730           59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM---GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFE  135 (556)
Q Consensus        59 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~  135 (556)
                      +..+....|+..|.++++..|.....+.++|.++++.   |+.-.|+..+..|++++|....+++.+++++..+++  +.
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r--~~  462 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR--YL  462 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh--HH
Confidence            3345577899999999999999999999999998875   577789999999999999999999999999999988  67


Q ss_pred             HHhcCCC
Q 008730          136 EAIAVPE  142 (556)
Q Consensus       136 ~Ai~~~~  142 (556)
                      +|++...
T Consensus       463 eal~~~~  469 (758)
T KOG1310|consen  463 EALSCHW  469 (758)
T ss_pred             HhhhhHH
Confidence            7777654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.76  E-value=1.9  Score=46.19  Aligned_cols=106  Identities=17%  Similarity=0.138  Sum_probs=84.4

Q ss_pred             HHccCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730           25 FRAKKYSQ-AIDLYSQAIELNSQNAVYYAN--RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (556)
Q Consensus        25 ~~~g~~~~-Al~~~~~al~~~p~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A  101 (556)
                      +..+.... |+..+...+.++|.++..+..  +...+...+....|....+.++..+|.+..+..++|.++...|..-.+
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            33444444 777788888888998877444  477777889999999999999999999999999999999988887776


Q ss_pred             HHHHHH-HHHhCCCCHHHHHHHHHHHHHHhh
Q 008730          102 LKDFQQ-VKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus       102 ~~~~~~-al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ...+.. +....|++......+-.++. +++
T Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~  150 (620)
T COG3914         121 LADISEIAEWLSPDNAEFLGHLIRFYQ-LGR  150 (620)
T ss_pred             HHHHHHHHHhcCcchHHHHhhHHHHHH-HHH
Confidence            666665 99999999998888855555 443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.74  E-value=5.1  Score=42.04  Aligned_cols=98  Identities=17%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-N--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------   81 (556)
                      ..++..+-+|.....-+.|+.|...|..|+++-.. +  +.+-.++|..|.+.++   +...|+..-.+.|.+       
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~---~ed~y~~ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD---AEDLYKALDLIGPLNTNSLSSQ  441 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc---HHHHHHHHHhcCCCCCCcchHH
Confidence            35778888999999999999999999999987543 3  3445578999998776   334444444456653       


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                         ..+++..|...+.++++.||...+.+.++..
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence               4578888888899999999999999999987

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.68  E-value=0.69  Score=37.62  Aligned_cols=29  Identities=17%  Similarity=0.351  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                      ++.++|.++...|++++|+..+++|+++.
T Consensus        43 all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   43 ALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.68  E-value=1.8  Score=39.90  Aligned_cols=98  Identities=20%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CChH--
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPK--   83 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~--   83 (556)
                      .+.-.++..+|..|.+.|++++|++.|.++.+..-..   .+.+.++-.+.+..+++........++-.+-.  .++.  
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            4445788999999999999999999999988865432   45677788888889999999999999876532  2322  


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730           84 --GYYRRGAAYLAMGKFKEALKDFQQV  108 (556)
Q Consensus        84 --~~~~lg~~~~~~g~~~~A~~~~~~a  108 (556)
                        .....|..+...++|.+|...|-.+
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence              2334455666677777777777544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.45  E-value=0.96  Score=36.77  Aligned_cols=55  Identities=29%  Similarity=0.417  Sum_probs=45.1

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730           23 EAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      ...+.|+|.+|++.+.+..+.....         ..+..++|.++...|++++|+..+++|+++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4568899999999988888764322         456788999999999999999999999754

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.44  E-value=2.7  Score=42.95  Aligned_cols=102  Identities=13%  Similarity=0.118  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----------------------------------NAVYYANRAFAH   58 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----------------------------------~~~a~~~lg~~~   58 (556)
                      .+...+..+..+...|+..+|+..++..++....                                  .+.++..+|.-.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4667788899999999999999999988882100                                  134455666665


Q ss_pred             HHh------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008730           59 TKL------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF-----------------KEALKDFQQVKKLSPN  114 (556)
Q Consensus        59 ~~~------g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~~~al~l~p~  114 (556)
                      ...      +..++++..|+++++.+|....+|+.+|..+...-+.                 ..|+..|-+++...++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            566      7788999999999999999999999999988654221                 2477788888887776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.16  E-value=3  Score=42.52  Aligned_cols=97  Identities=18%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      +-.....++...-.|+|++|...|+.-+. +|+.- -.+..|=..-.+.|.++.|..+.+.+-..-|.-+.++.-.-...
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            34455667777778888888888776544 44321 11222222334567888888888888888888877777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 008730           93 LAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l  111 (556)
                      ...|+++.|++..+.....
T Consensus       199 ~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             HhcCChHHHHHHHHHHHHH
Confidence            8888888888887766553

>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain

Probab=91.08  E-value=0.31  Score=48.11  Aligned_cols=65  Identities=17%  Similarity=0.175  Sum_probs=37.2

Q ss_pred             ceEeccCCCCHHH----------------------HHHHHHhcCCC-CCCCCeeeecccccCCCCh-----HHHHHHHHh
Q 008730          295 FTVCGDVHGQFYD----------------------LLNIFELNGLP-SEENPYLFNGDFVDRGSFS-----VEVILTLFA  346 (556)
Q Consensus       295 i~vigDiHG~~~~----------------------l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s-----~e~l~~l~~  346 (556)
                      |+.++|+||++..                      +..++++.... ..+..++..||+++..+.+     ..++..+-.
T Consensus         3 il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~~   82 (264)
T cd07411           3 LLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALNA   82 (264)
T ss_pred             EEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHHh
Confidence            6778899987533                      34455554322 2222245699999877543     244444444


Q ss_pred             ccccCCCeEEEeccccccc
Q 008730          347 FKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       347 lk~~~p~~v~~lrGNHE~~  365 (556)
                      +.    -. .+. ||||..
T Consensus        83 ~g----~d-a~~-GNHefd   95 (264)
T cd07411          83 LG----VD-AMV-GHWEFT   95 (264)
T ss_pred             hC----Ce-EEe-cccccc
Confidence            32    23 333 999953

SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.00  E-value=2.2  Score=35.63  Aligned_cols=72  Identities=13%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 008730           54 RAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGK-----------FKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        54 lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      +|..+++.|++-+|++..+..+...+++.   -.+..-|.+..++..           .-.|++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778899999999999999999988765   566667887766542           3469999999999999987777


Q ss_pred             HHHHHH
Q 008730          120 QKVKEC  125 (556)
Q Consensus       120 ~~l~~~  125 (556)
                      +.++.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            777654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.91  E-value=2.3  Score=47.27  Aligned_cols=90  Identities=19%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHH----------HhCC----------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAI----------EIDP----------RYPKGYYRRGAAYLAMGKFKEALKDFQQV  108 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al----------~l~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  108 (556)
                      ..|++.|.-+...++.+.|+++|+++-          .-+|          .++..|-..|.-+...|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            347788888888899999999999862          2244          34567778899999999999999999987


Q ss_pred             HHh---------------------CCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730          109 KKL---------------------SPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (556)
Q Consensus       109 l~l---------------------~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~  140 (556)
                      -..                     ...+..+-+.+++.|...|+  +.+|+..
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~--v~~Av~F  989 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD--VVKAVKF  989 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH--HHHHHHH
Confidence            653                     23455677788888877776  3444443

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain

Probab=90.80  E-value=5.9  Score=38.75  Aligned_cols=51  Identities=16%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             CEEEeeccccccCceEec--CCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEE
Q 008730          479 DLVVRSHEVKDEGYEIEH--DGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTF  534 (556)
Q Consensus       479 ~~iir~H~~~~~G~~~~~--~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~  534 (556)
                      .+++-|||.. -|.+...  +++-+.+.|.|.|.    -.|.++.|.=++++++.+.|
T Consensus       205 hVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs----~t~~~vlvdl~tLe~~~v~f  257 (257)
T cd07387         205 HVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFS----KTGTAVLVNLRTLECEPISF  257 (257)
T ss_pred             CEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcC----cCCEEEEEECCcCcEEEEeC
Confidence            6788999984 5555443  36778888889874    35666667558888887765

PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=90.71  E-value=0.01  Score=59.59  Aligned_cols=216  Identities=12%  Similarity=-0.088  Sum_probs=125.1

Q ss_pred             cCCCCCcceEeccCCCCHHHHHHHHHhcCCC-CCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       288 ~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ..|+-.-++|+-+-||.           |.. +.....|+++++++++.+.++.+.+-+..+..+-.+--..++||+.. 
T Consensus        25 ~gpre~l~~~~~~~~~~-----------g~~~~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~-   92 (476)
T KOG0918|consen   25 SGPREKLIYVVAVYTGT-----------GYEKPDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDS-   92 (476)
T ss_pred             hCccceeEEEeccccCC-----------CCcCCcceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCc-
Confidence            34433345666666652           322 44556899999999999999999999988888888888889999433 


Q ss_pred             cccccCchhhHHhhh----hHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhh
Q 008730          367 MNKIYGFEGEVRSKL----SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCEL  442 (556)
Q Consensus       367 ~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~l  442 (556)
                          ++++.++.-.-    ..-++...++-+...+..++.+ ++++.||+. .|.......+..+.-..--..++ ..+ 
T Consensus        93 ----~~~R~~LVlp~l~S~riyvid~~~ep~~~~l~k~i~~-~il~~~~l~-~Pht~hcla~g~v~vs~lGd~~g-n~k-  164 (476)
T KOG0918|consen   93 ----SFKRRYLVLPSLNSGRIYVIDVKTEPRKPSLEKTIDP-DILEKTGLA-CPHTSHCLASGNVMVSCLGDAEG-NAK-  164 (476)
T ss_pred             ----chhhhheeecccccCceEEEEeccCcCccceeeeech-hhHhhcCCc-CCcccccccCCCeeEEeeccccc-CCc-
Confidence                23332211111    1124455567777778877756 999999998 77655444433322110000000 001 


Q ss_pred             hcCCCCCCC-----CCCcCCCCCccccCHHH--HHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCC
Q 008730          443 LWSDPQPLP-----GRGPSKRGVGLSFGADV--TKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGN  515 (556)
Q Consensus       443 lw~dp~~~~-----~~~~~~rg~g~~fg~~~--~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n  515 (556)
                      .|-++.+..     .|.  .+|....||.+-  .-++....+.+...+.|.....+.....|+  ++.++.+-|.-..+|
T Consensus       165 g~f~llD~~~~~k~tw~--~~~~~p~~gyDfwyqpr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~  240 (476)
T KOG0918|consen  165 GGFLLLDSDFNEKGTWE--KPGHSPLFGYDFWYQPRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGE  240 (476)
T ss_pred             CCeEEecCccceecccc--cCCCccccccceeeccccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCcc
Confidence            122222221     111  111222333221  223344455666778887754455455565  889999999887889


Q ss_pred             eEEEEEEecCCC
Q 008730          516 KGAFIRFEAPTL  527 (556)
Q Consensus       516 ~~a~~~~~~~~~  527 (556)
                      .++.+.++...+
T Consensus       241 ~~QtidL~~~gl  252 (476)
T KOG0918|consen  241 LKQTIDLGDTGL  252 (476)
T ss_pred             ceeEEecCCCCc
Confidence            999999944333

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.64  E-value=0.87  Score=44.95  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        67 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      |+.+|.+|+.+.|++..+|+++|.++...|+.=+|+-+|-|++...-..+.+..++......
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67888889999999888999999988888888888888888887765567778888877665

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.52  E-value=0.45  Score=46.78  Aligned_cols=82  Identities=13%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .+.-+..+..|...+....+.|-|.+--..|.+++..+|.+++.|.. -+.-+...++++.|...+.++++++|++|..|
T Consensus       100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            34556778889999999999999999999999999999999999987 45567788999999999999999999999887


Q ss_pred             HHH
Q 008730           86 YRR   88 (556)
Q Consensus        86 ~~l   88 (556)
                      +..
T Consensus       180 ~ey  182 (435)
T COG5191         180 IEY  182 (435)
T ss_pred             HHH
Confidence            653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.38  E-value=1.5  Score=43.28  Aligned_cols=80  Identities=24%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730           30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (556)
Q Consensus        30 ~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  109 (556)
                      |..-+...+++++..  ...++..++..+...|+++.++..+++.+..+|.+-..|..+-.+|...|+...|+..|++.-
T Consensus       137 f~~WV~~~R~~l~e~--~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEEL--FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            777777777766643  467889999999999999999999999999999999999999999999999999999999887


Q ss_pred             Hh
Q 008730          110 KL  111 (556)
Q Consensus       110 ~l  111 (556)
                      +.
T Consensus       215 ~~  216 (280)
T COG3629         215 KT  216 (280)
T ss_pred             HH
Confidence            74

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.28  E-value=1.9  Score=46.44  Aligned_cols=81  Identities=17%  Similarity=0.110  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  124 (556)
                      +.+-|.-+++.++|..+++.|...+..-|.+      .+....++.||..+.+.+.|.+.++.|-+.+|.++-.......
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            4455777889999999999999999876643      6678889999999999999999999999999998877666555


Q ss_pred             HHHHHhh
Q 008730          125 CEKAVKK  131 (556)
Q Consensus       125 ~~~~~~~  131 (556)
                      +....+.
T Consensus       437 ~~~~E~~  443 (872)
T KOG4814|consen  437 SFLAEDK  443 (872)
T ss_pred             HHHHhcc
Confidence            5444333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.19  E-value=3.2  Score=39.43  Aligned_cols=80  Identities=16%  Similarity=0.029  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHHHHHccCHHH-------HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730           11 VSRAEELKALANEAFRAKKYSQ-------AIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~-------Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      ...+..+..+|-.|...|+.++       |++.|.+|++....      ...+.+.+|....+.|++++|+.+|.+++..
T Consensus       115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            3557778888888888888544       55666666654422      2567888999999999999999999999976


Q ss_pred             CCCCh-HHHHHHHH
Q 008730           78 DPRYP-KGYYRRGA   90 (556)
Q Consensus        78 ~p~~~-~~~~~lg~   90 (556)
                      .-.+. ..+..+|.
T Consensus       195 ~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  195 KKASKEPKLKDMAR  208 (214)
T ss_pred             CCCCCcHHHHHHHH
Confidence            43332 34454444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.17  E-value=1  Score=29.43  Aligned_cols=17  Identities=24%  Similarity=0.276  Sum_probs=6.2

Q ss_pred             HHHHHHHhhCHHHHHHH
Q 008730           54 RAFAHTKLEEYGSAIQD   70 (556)
Q Consensus        54 lg~~~~~~g~~~~A~~~   70 (556)
                      +|..+..+|++++|+..
T Consensus         7 ~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    7 LAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHH
Confidence            33333333333333333

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.08  E-value=4.1  Score=44.77  Aligned_cols=107  Identities=18%  Similarity=0.152  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHcc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           16 ELKALANEAFRAK-----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        16 ~~~~lg~~~~~~g-----~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +.+.+|.+|.+..     +++.|+.+|.++-++..  +.+.+.+|.++..-.   ++..|..+|..|.+.  .+..+.++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence            4556777777743     78899999999988764  566778898887655   578999999999866  46889999


Q ss_pred             HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           88 RGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        88 lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      +|.||..-    -+...|..++.++.+..  ++.+...++..+..
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~  408 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY  408 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence            99999753    47899999999999987  56666666655543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.97  E-value=3.6  Score=42.32  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=86.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC----CHHH
Q 008730           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG----KFKE  100 (556)
Q Consensus        27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g----~~~~  100 (556)
                      +.-.++-+.+...+++.+|+...+|+.+.-++.+.+  ++..-++.++++++.||.|..+|..+-.+.....    ...+
T Consensus        88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~  167 (421)
T KOG0529|consen   88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE  167 (421)
T ss_pred             HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence            346777788999999999999999999999998766  4788999999999999999998877766555433    2577


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730          101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus       101 A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      -+++..+++.-++.|-.+|.+...+...+-
T Consensus       168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~  197 (421)
T KOG0529|consen  168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLH  197 (421)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence            889999999999999999998887766443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.90  E-value=11  Score=40.63  Aligned_cols=125  Identities=11%  Similarity=0.065  Sum_probs=107.0

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCChHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRYPKGYY   86 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~   86 (556)
                      .-++.....|......-...|+++.....|++++--.....+.|...+.-....|+.+-|-..+.++.+. .|+.+..+.
T Consensus       291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L  370 (577)
T KOG1258|consen  291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL  370 (577)
T ss_pred             cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence            3445566778888888899999999999999999999999999999999999999999999999888886 466777888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      .-+..-...|++..|...|++...--|+...+-........+.++.
T Consensus       371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~  416 (577)
T KOG1258|consen  371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL  416 (577)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence            8888889999999999999999998898887776666666666663

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.52  E-value=3.9  Score=42.76  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=82.4

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (556)
Q Consensus        22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A  101 (556)
                      ......||.-.|-.....+++..|.++..-...+.++.++|.|+.|.+.+.-+-..-..-..+...+-..++.+|++++|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            34567899999999999999999999999999999999999999999998777665555556777777888999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q 008730          102 LKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus       102 ~~~~~~al~l~p~~~~~~~~  121 (556)
                      ...-+-.+.-.-+++++...
T Consensus       377 ~s~a~~~l~~eie~~ei~~i  396 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTV  396 (831)
T ss_pred             HHHHHHHhccccCChhheee
Confidence            98888777766666665433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.30  E-value=1.3  Score=28.96  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008730           83 KGYYRRGAAYLAMGKFKEALKD--FQQVKKLSPND  115 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~l~p~~  115 (556)
                      +.++.+|..+...|++++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            5788899999999999999999  55888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.27  E-value=0.55  Score=28.07  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQ  106 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~  106 (556)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355666666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=88.95  E-value=4  Score=34.56  Aligned_cols=64  Identities=17%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCHH----HHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-------NSQNAV----YYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-------~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      +-.+-.++.++...|+|++++....++|..       +.+...    +-+++|.++..+|+.++|+..|+.+.+.
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344556888899999999988887777754       455444    4467899999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.79  E-value=7.5  Score=38.37  Aligned_cols=61  Identities=18%  Similarity=0.252  Sum_probs=48.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      ...++..++..+...++++.++..+++.+..+|.+...+..+..++...|+  ...|+..+.+
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~--~~~ai~~y~~  212 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR--QSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence            356778888888888889999999999999999888888888888887777  4555555543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.56  E-value=0.78  Score=30.39  Aligned_cols=26  Identities=31%  Similarity=0.342  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIE   76 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~   76 (556)
                      +..+|.+-...++|++|+..|++++.
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=88.40  E-value=1.3  Score=51.65  Aligned_cols=130  Identities=22%  Similarity=0.250  Sum_probs=99.8

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE--------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----   77 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----   77 (556)
                      .-..+.-....|......+.+.+|.+ ..+++.        +.|.....+..++..+.+++++++|+...++|.-+    
T Consensus       928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen  928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred             ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh
Confidence            33567777888989999999998888 444443        46888999999999999999999999999998754    


Q ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           78 ----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        78 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                          .|+....+.+++...+..++...|...+.+++.+.        |.-.....++..++..+++  ++.|+.+.+
T Consensus      1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e--~d~al~~le 1081 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE--ADTALRYLE 1081 (1236)
T ss_pred             ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH--HHHHHHHHH
Confidence                34557789999999999999999999999999872        4434445566666544444  566666555

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.24  E-value=9.2  Score=40.22  Aligned_cols=128  Identities=16%  Similarity=0.062  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhC---CCC-
Q 008730           12 SRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQN---AVYYANRAFAH-TKLEEYGSAIQDASKAIEID---PRY-   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~---p~~-   81 (556)
                      .-+.++..+|..+...|  +...++++++..+...|.+   +..+..+|..+ ...++++.|...+++|..+.   |.. 
T Consensus         5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy   84 (629)
T KOG2300|consen    5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY   84 (629)
T ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence            34677888899999999  8999999999999988775   45566777654 45789999999999998764   332 


Q ss_pred             ---hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHhhhhHHHHhcCC
Q 008730           82 ---PKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQ----KVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        82 ---~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~----~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                         ..++-.++.+|.... .+..|...+++|+++....+....    .++.+..-.  .++.-|+++.
T Consensus        85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id--kD~~sA~elL  150 (629)
T KOG2300|consen   85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID--KDFPSALELL  150 (629)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh--ccchhHHHHH
Confidence               456778888888887 788999999999999888775433    333333222  2355565553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=88.09  E-value=3  Score=43.91  Aligned_cols=76  Identities=12%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      +...|........+.+.+.+--..|.+++..+|++++.|..-|.=.+.-+. .+.|.+.+.++++.+|+++..|...
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY  180 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence            466677777666777779999999999999999999999999987777665 9999999999999999998876543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.07  E-value=1.5  Score=43.26  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        33 Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      |..+|.+|+.+.|++...|+++|.++...|+.-+|+-+|-+++...--.+.+.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999997665568888888888777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.04  E-value=1  Score=29.84  Aligned_cols=30  Identities=20%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                      +++..+|.+-...++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=87.94  E-value=3.2  Score=48.52  Aligned_cols=123  Identities=14%  Similarity=0.172  Sum_probs=98.0

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---   77 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---   77 (556)
                      -+|..+..+..++..+...|++++|+..-.++.-+.        |+....+.+++...+..++...|+..+.++..+   
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            356778889999999999999999999988877553        556778899998888889999999999999875   


Q ss_pred             -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHhh
Q 008730           78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--------NDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        78 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~l~~~~~~~~~  131 (556)
                           .|.-...-.+++.++..+++++.|+.+++.|++..-        .....+..++++....+.
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~d 1114 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKD 1114 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHH
Confidence                 455555668889999999999999999999999642        123445556666655555

>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain

Probab=87.87  E-value=0.9  Score=45.24  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=38.3

Q ss_pred             cceEeccCCCCH---------------------HHHHHHHHhcCCCCCCCCeeeecccccCCCC-----hHHHHHHHHhc
Q 008730          294 HFTVCGDVHGQF---------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAF  347 (556)
Q Consensus       294 ~i~vigDiHG~~---------------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~l  347 (556)
                      +|+-++|+||++                     ..+..+++.......+..++..||+++..+.     ...++..+-.+
T Consensus         2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~   81 (281)
T cd07409           2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL   81 (281)
T ss_pred             EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc
Confidence            377889999875                     3444555554332233345568999987653     23344444343


Q ss_pred             cccCCCeEEEecccccc
Q 008730          348 KCMCPSAIYLSRGNHES  364 (556)
Q Consensus       348 k~~~p~~v~~lrGNHE~  364 (556)
                      .   . .+.. .||||.
T Consensus        82 g---~-D~~~-lGNHef   93 (281)
T cd07409          82 G---Y-DAMT-LGNHEF   93 (281)
T ss_pred             C---C-CEEE-eccccc
Confidence            3   2 3333 599996

CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.54  E-value=13  Score=38.20  Aligned_cols=109  Identities=16%  Similarity=0.009  Sum_probs=67.8

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCCC---hHHHHHHHHHHHH-c
Q 008730           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPRY---PKGYYRRGAAYLA-M   95 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~---~~~~~~lg~~~~~-~   95 (556)
                      .....|+.+.|..+..++-+..|.-+.++...-......|+++.|++..+...+.   .++-   ..+-..-+.+... .
T Consensus       163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld  242 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD  242 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence            3456788888888888888888888877777777777788888887777655432   2221   1122222222222 2


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      .+...|...-.+++++.|+...+-..-+..+...++
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~  278 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGN  278 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence            345667777777777777766666666666555554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.51  E-value=11  Score=37.25  Aligned_cols=104  Identities=20%  Similarity=0.170  Sum_probs=75.3

Q ss_pred             HHHccCHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHh----CC---C-------
Q 008730           24 AFRAKKYSQAIDLYSQAIELN-SQN-------AVYYANRAFAHTKLE-EYGSAIQDASKAIEI----DP---R-------   80 (556)
Q Consensus        24 ~~~~g~~~~Al~~~~~al~~~-p~~-------~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l----~p---~-------   80 (556)
                      ..++|+++.|..++.|+-.+. ..+       +..+++.|......+ ++++|..++++|.++    .+   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457899999999999988765 222       356788888888899 999999999999887    22   1       


Q ss_pred             ChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           81 YPKGYYRRGAAYLAMGKFK---EALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        81 ~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      ...++..++.+|...+.++   +|...++.+-.-.|+.+..+...-++..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~  132 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL  132 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh
Confidence            1457888899998888765   4555555565566777776644444433

It is also involved in sporulation [].

>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family

Probab=87.43  E-value=0.95  Score=44.46  Aligned_cols=69  Identities=19%  Similarity=0.153  Sum_probs=50.3

Q ss_pred             CcceEeccCCCC--HHHHHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          293 KHFTVCGDVHGQ--FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       293 ~~i~vigDiHG~--~~~l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ++|.+||||=|.  ...+...|..+......+-+|..||....| .-+-++...|..+-+    .++-+ |||+.-.
T Consensus         1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~Dk   72 (266)
T TIGR00282         1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWFQ   72 (266)
T ss_pred             CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhccC
Confidence            468999999999  566667777665444456677789999766 457888888887753    45554 9998653

A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.40  E-value=8.4  Score=38.26  Aligned_cols=108  Identities=21%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCC-hHHHH
Q 008730           16 ELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY-PKGYY   86 (556)
Q Consensus        16 ~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~-~~~~~   86 (556)
                      ....++..+..    ..+..+|+..|+  ...+..++.+.+++|..|..    ..++.+|..+|++|.+..-.. ..+.+
T Consensus        75 a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~  152 (292)
T COG0790          75 ALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY  152 (292)
T ss_pred             HHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            34444444432    335666666666  33344556666667766665    336777777777776664322 23366


Q ss_pred             HHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           87 RRGAAYLAMG-------KFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        87 ~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      .+|.+|..-.       +...|...|.++-...  ++.+...++.++.
T Consensus       153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~  198 (292)
T COG0790         153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE  198 (292)
T ss_pred             HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence            6666665531       2225666666666654  5566666665543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.40  E-value=7.6  Score=40.12  Aligned_cols=104  Identities=13%  Similarity=0.041  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCC-----CChH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDP-----RYPK   83 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~   83 (556)
                      ..--.+++.....+.++|-+..|++..+-.+.+||. |+-.-.. +-....+.++|+--++.++.......     .-|.
T Consensus       100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn  179 (360)
T PF04910_consen  100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN  179 (360)
T ss_pred             hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc
Confidence            334566778888999999999999999999999999 7655443 34445677888888887777655211     1345


Q ss_pred             HHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 008730           84 GYYRRGAAYLAMGKF---------------KEALKDFQQVKKLSPN  114 (556)
Q Consensus        84 ~~~~lg~~~~~~g~~---------------~~A~~~~~~al~l~p~  114 (556)
                      ..+..+.+++.+++.               ++|...+++|+...|.
T Consensus       180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            778889999999998               8999999999998874

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]

Probab=86.67  E-value=0.46  Score=48.87  Aligned_cols=43  Identities=26%  Similarity=0.471  Sum_probs=35.3

Q ss_pred             CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN  368 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~  368 (556)
                      .|++-.+||+-||||++-.+++.|...     ..|-+-.||||-..+.
T Consensus       191 VDhLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWmg  233 (648)
T COG3855         191 VDHLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWMG  233 (648)
T ss_pred             hhheeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEee
Confidence            457999999999999999999998776     3666778999965543

>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

Probab=85.85  E-value=0.87  Score=54.69  Aligned_cols=67  Identities=16%  Similarity=0.136  Sum_probs=41.0

Q ss_pred             CcceEeccCCCCH---HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEecccccc
Q 008730          293 KHFTVCGDVHGQF---YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       293 ~~i~vigDiHG~~---~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      -+|+.++|+||++   ..+..++++..-...+..++..||++++.+.+     ..++..+-.+.     --++..||||.
T Consensus       661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~GNHEf  735 (1163)
T PRK09419        661 LTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFGNHEF  735 (1163)
T ss_pred             EEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEeccccc
Confidence            4689999999985   44444555443222222233379999987654     34555555543     22446899996

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]

Probab=85.81  E-value=4.4  Score=42.59  Aligned_cols=220  Identities=20%  Similarity=0.187  Sum_probs=107.3

Q ss_pred             CcceEeccCC-CCHHHHHHHHH----hcCCC----CCCCCeeeecccccC-CC-----------ChHHHHHHHHhccccC
Q 008730          293 KHFTVCGDVH-GQFYDLLNIFE----LNGLP----SEENPYLFNGDFVDR-GS-----------FSVEVILTLFAFKCMC  351 (556)
Q Consensus       293 ~~i~vigDiH-G~~~~l~~~l~----~~~~~----~~~~~~vflGD~vdr-G~-----------~s~e~l~~l~~lk~~~  351 (556)
                      ..+..++|+| |...-+...|.    .++-+    +...-++.-||.||. |-           +..|-.+.+-.+-..-
T Consensus       226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~v  305 (481)
T COG1311         226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQV  305 (481)
T ss_pred             eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhC
Confidence            3578999999 55444444333    22222    122346777899994 21           1222233333333223


Q ss_pred             C--CeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccccc-CCeEEEEecccccCCCCChhhhhhcc
Q 008730          352 P--SAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTID  428 (556)
Q Consensus       352 p--~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~  428 (556)
                      |  =.|++.+||||..-....--+..+..    ..++...+-.|-.=|....+ |.+++..||       .+++|+...-
T Consensus       306 p~~I~v~i~PGnhDa~r~a~PQp~~~~~~----kslf~~~n~~~v~NP~~~~l~G~~vL~~hG-------~sidDii~~v  374 (481)
T COG1311         306 PEHIKVFIMPGNHDAVRQALPQPHFPELI----KSLFSLNNLLFVSNPALVSLHGVDVLIYHG-------RSIDDIIKLV  374 (481)
T ss_pred             CCCceEEEecCCCCccccccCCCCcchhh----cccccccceEecCCCcEEEECCEEEEEecC-------CCHHHHHhhC
Confidence            3  36788999999765543322221111    11222222222233433333 446888886       2566665432


Q ss_pred             cCCCC--CCccchhhhhcCCCCCCCCC-CcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEec
Q 008730          429 RFCEP--PEEGLMCELLWSDPQPLPGR-GPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFS  505 (556)
Q Consensus       429 r~~~~--~~~~~~~~llw~dp~~~~~~-~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfS  505 (556)
                      ...+.  +.....+-|.|.-=.+..|. .+.     ..|.+|.   |.=.-=-++++.||+.. .|+....+.++|..+|
T Consensus       375 P~~~~~~~~~ame~lLk~rHlaPtygg~~p~-----aP~~kD~---lVIeevPDv~~~Ghvh~-~g~~~y~gv~~vns~T  445 (481)
T COG1311         375 PGADYDSPLKAMEELLKRRHLAPTYGGTLPI-----APETKDY---LVIEEVPDVFHTGHVHK-FGTGVYEGVNLVNSGT  445 (481)
T ss_pred             CCCCccchHHHHHHHHHhcccCCCCCCcccc-----ccCCcCc---eeeccCCcEEEEccccc-cceeEEeccceEEeee
Confidence            22111  11112223445442211110 000     0011110   00001136789999994 8999988989999999


Q ss_pred             CCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730          506 APNYCDQMGNKGAFIRFEAPTLKPNIVTFAA  536 (556)
Q Consensus       506 a~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~  536 (556)
                      -+.+.    -.+-++.|.-...+..+..|..
T Consensus       446 ~q~qT----efqk~vni~p~~~~v~vv~~~~  472 (481)
T COG1311         446 WQEQT----EFQKMVNINPTPGNVPVVDFDS  472 (481)
T ss_pred             ecchh----ccceEEEecCcccceeEEeccc
Confidence            88653    3455677733345555555554

>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain

Probab=85.52  E-value=1.2  Score=43.75  Aligned_cols=57  Identities=19%  Similarity=0.202  Sum_probs=37.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCCCeeeecccccCCCC-----hHHHHHHHHhccccCCCeEEEecccccc
Q 008730          303 GQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       303 G~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      |-+..+..++++..-...+..++..||+++.++.     ...++..+-.+..     -+...||||.
T Consensus        21 gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-----d~~~~GNHef   82 (257)
T cd07406          21 GGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-----DLACFGNHEF   82 (257)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-----cEEeeccccc
Confidence            4467777777776544334468999999987753     2455666555531     2446799995

CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th

>KOG2476 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.46  E-value=1.7  Score=44.97  Aligned_cols=69  Identities=23%  Similarity=0.313  Sum_probs=53.2

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCC-CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSE-ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH  362 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~-~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNH  362 (556)
                      .+|.||||.-|+++.|.+-++......+ =+.++++|++.+--..+-|++.+.-.- ...|--++++-+|-
T Consensus         6 ~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~   75 (528)
T KOG2476|consen    6 AKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA   75 (528)
T ss_pred             ceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence            4699999999999999887776544332 456999999999877888888876554 45677778877765

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.41  E-value=17  Score=37.55  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=84.6

Q ss_pred             HHHHccCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHhh------------CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           23 EAFRAKKYSQ-AIDLYSQAIELNSQNAVYYANRAFAHTKLE------------EYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        23 ~~~~~g~~~~-Al~~~~~al~~~p~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .....|.|++ +++.=.+.+..+|+...+|+.+=.++....            -.++-+.....+++.+|+...+|+.+.
T Consensus        37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~  116 (421)
T KOG0529|consen   37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK  116 (421)
T ss_pred             HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            3345566654 677777888889998888887655443322            356678888999999999999999999


Q ss_pred             HHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           90 AAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        90 ~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      .++.+.+.  +..-++.++++++.+|.|-.+|...-.+......
T Consensus       117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~  160 (421)
T KOG0529|consen  117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER  160 (421)
T ss_pred             HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence            99997764  6889999999999999999988877776655443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.21  E-value=20  Score=32.64  Aligned_cols=56  Identities=9%  Similarity=0.032  Sum_probs=27.0

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAI   75 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al   75 (556)
                      -+..+.+.+..++|+..|...-+..-..  .-+.+..|.+..+.|+-..|+.+|..+-
T Consensus        64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia  121 (221)
T COG4649          64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA  121 (221)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence            3344444555555555555544443222  2234444555555555555555555543

>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]

Probab=84.70  E-value=1  Score=45.13  Aligned_cols=75  Identities=23%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCC--CCCCCeeeeccccc-CCC---ChHHH-------HHH--HHhccccCCCeEEE
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLP--SEENPYLFNGDFVD-RGS---FSVEV-------ILT--LFAFKCMCPSAIYL  357 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~--~~~~~~vflGD~vd-rG~---~s~e~-------l~~--l~~lk~~~p~~v~~  357 (556)
                      +||.|-|=.||.++.+-+-+..+...  ...|.++++||+=- |..   +|+.|       =.|  -..-....|=-.++
T Consensus         1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF   80 (456)
T KOG2863|consen    1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF   80 (456)
T ss_pred             CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence            46899999999999987544433221  24577999999952 211   12111       111  11223567767788


Q ss_pred             eccccccccc
Q 008730          358 SRGNHESKSM  367 (556)
Q Consensus       358 lrGNHE~~~~  367 (556)
                      |-||||.+.-
T Consensus        81 IGGNHEAsny   90 (456)
T KOG2863|consen   81 IGGNHEASNY   90 (456)
T ss_pred             ecCchHHHHH
Confidence            8999998654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=84.58  E-value=4.2  Score=35.79  Aligned_cols=47  Identities=19%  Similarity=0.139  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK   97 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   97 (556)
                      ....+...+..|+|.-|......++..+|++..+...++.+|.++|.
T Consensus        73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555555555555555555555554443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.53  E-value=9  Score=29.90  Aligned_cols=61  Identities=20%  Similarity=0.077  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      ....|.-++...+.++|+..++++++..++.+.   ++-.+..+|...|+|++++++--+-+.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566667778888888888888888776544   4445556777888888877766554444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.42  E-value=1.2  Score=26.63  Aligned_cols=22  Identities=14%  Similarity=-0.242  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDA   71 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~   71 (556)
                      +...+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.41  E-value=12  Score=36.38  Aligned_cols=97  Identities=10%  Similarity=0.115  Sum_probs=86.2

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008730           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG-SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF  105 (556)
Q Consensus        27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~  105 (556)
                      ..+..+-++++.+.++-+|.+.+.|..+-.+....|++. .-++..+.++..+.++..+|..+--+....+.++.-+++.
T Consensus        91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~  170 (318)
T KOG0530|consen   91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA  170 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence            346778889999999999999999999988888889888 8899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHH
Q 008730          106 QQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus       106 ~~al~l~p~~~~~~~~l~  123 (556)
                      .+.++.+-.|-.++...-
T Consensus       171 ~~Lle~Di~NNSAWN~Ry  188 (318)
T KOG0530|consen  171 DELLEEDIRNNSAWNQRY  188 (318)
T ss_pred             HHHHHHhhhccchhheee
Confidence            999999887777775543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=84.21  E-value=4.9  Score=42.74  Aligned_cols=102  Identities=10%  Similarity=-0.010  Sum_probs=76.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      .+++|.+..+|+.+-..+..+ .++++.+.|++.+...|..+.+|.......+..++|+.-...|.+++..--+ .+.|-
T Consensus        13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~   90 (656)
T KOG1914|consen   13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK   90 (656)
T ss_pred             HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence            357788899999998888777 9999999999999999999999999999999999999999999998854321 22222


Q ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHH
Q 008730           87 -RRGAAYLAMGKFKEALKDFQQVKK  110 (556)
Q Consensus        87 -~lg~~~~~~g~~~~A~~~~~~al~  110 (556)
                       .+..+-...++...+....-+|..
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~  115 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYD  115 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHH
Confidence             233444555655555554444444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.14  E-value=5.9  Score=40.85  Aligned_cols=81  Identities=20%  Similarity=0.181  Sum_probs=59.7

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHh-------C-CCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           55 AFAHTKLEEYGSAIQDASKAIEI-------D-PRY----------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        55 g~~~~~~g~~~~A~~~~~~al~l-------~-p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      |...+++++|..|..-|+.|+++       . |..          ...--.+..||.++++.+.|+..--+.+.++|.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            33445555555555555555554       2 221          12455788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHH
Q 008730          117 DAAQKVKECEKAVKKLKFEEA  137 (556)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~~~A  137 (556)
                      .-+..-+.|...+.+  |.+|
T Consensus       263 rnHLrqAavfR~LeR--y~eA  281 (569)
T PF15015_consen  263 RNHLRQAAVFRRLER--YSEA  281 (569)
T ss_pred             hHHHHHHHHHHHHHH--HHHH
Confidence            999999999998888  4554

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.96  E-value=2.7  Score=43.87  Aligned_cols=99  Identities=13%  Similarity=0.073  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG   96 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g   96 (556)
                      ....+.+....|+|++|.....-+-..-.....+...+-..+..+|++++|.....-.+.-.-.+++...--|..-.++|
T Consensus       326 i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~  405 (831)
T PRK15180        326 IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQ  405 (831)
T ss_pred             hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHh
Confidence            34567788889999999988776665555556667777778889999999999988888877778888777777888899


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 008730           97 KFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        97 ~~~~A~~~~~~al~l~p~~  115 (556)
                      -+++|..+|++.+.++|..
T Consensus       406 ~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        406 LFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHHHHHHhccCChh
Confidence            9999999999999998754

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.77  E-value=27  Score=40.27  Aligned_cols=88  Identities=20%  Similarity=0.267  Sum_probs=68.0

Q ss_pred             HHHHHHHccCHHHHHHHHHH------HHHh----------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730           20 LANEAFRAKKYSQAIDLYSQ------AIEL----------------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~------al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      .|......+-|++|...|++      |++.                .-+.+..|..+|.+..+.+...+|++.|-+|   
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            46666777777887777654      1111                1245788999999999999999999999665   


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        78 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                        ++|..|...-.+-.+.|.|++-++++..|-+..
T Consensus      1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred             --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence              677788888888899999999999998887654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.02  E-value=10  Score=35.85  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                      ..+.+.+...+|+...+.-++.+|.+......+-..|.-.|+|++|...++-+-++.|++..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            34667788999999999999999999888888889999999999999999999999998743

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=82.95  E-value=32  Score=34.51  Aligned_cols=94  Identities=20%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------------------
Q 008730           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------------------   78 (556)
Q Consensus        18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------------------   78 (556)
                      +..-+...+..+..+-+.....|++++|+.+.++..++.-  +.--..+|...+++|++.-                   
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence            3444556677788888999999999999999999988752  2333456666666665431                   


Q ss_pred             ----CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           79 ----PRY--PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        79 ----p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                          ..+  ...-.++|.|-.++|+..+|++.++...+-.|
T Consensus       266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence                112  23445779999999999999999998887776

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.72  E-value=4.9  Score=39.47  Aligned_cols=54  Identities=22%  Similarity=0.207  Sum_probs=36.8

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730           55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV  108 (556)
Q Consensus        55 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  108 (556)
                      +..|...|.+.+|++..+++++++|-+-..+..+-.++..+|+--.|++.|++.
T Consensus       286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            455666677777777777777777766666666777777777766666666654

>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain

Probab=81.97  E-value=2.2  Score=42.68  Aligned_cols=71  Identities=23%  Similarity=0.252  Sum_probs=39.1

Q ss_pred             EeccCCCC---HHHHHHHHHhcCCC-CCCCCeeeecccccCCCChH--H------HHHHHHhccccCC-CeEEEeccccc
Q 008730          297 VCGDVHGQ---FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--E------VILTLFAFKCMCP-SAIYLSRGNHE  363 (556)
Q Consensus       297 vigDiHG~---~~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s~--e------~l~~l~~lk~~~p-~~v~~lrGNHE  363 (556)
                      -.|+-. |   ...+..+++.+... +.-+-+|+.||+++.+....  +      .-.+...++..+| -.|+.+.||||
T Consensus        42 ~~G~~~-CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD  120 (296)
T cd00842          42 PWGDYG-CDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHD  120 (296)
T ss_pred             CCcCcC-CCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence            455543 3   23344455443221 23456999999998876531  1      1112222332222 46999999999


Q ss_pred             ccccc
Q 008730          364 SKSMN  368 (556)
Q Consensus       364 ~~~~~  368 (556)
                      ....+
T Consensus       121 ~~p~~  125 (296)
T cd00842         121 SYPVN  125 (296)
T ss_pred             CCccc
Confidence            86544

Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.49  E-value=44  Score=31.73  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=57.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   82 (556)
                      ....+.+.+..++|+...+.-++..|.+......+-..+.-.|+|++|...++-+-+++|++.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            345678899999999999999999999999999999999999999999999999999999863

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=80.86  E-value=21  Score=36.77  Aligned_cols=102  Identities=15%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCCChH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPK   83 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~   83 (556)
                      +..|+-+...+-..|+...-...+...++.     +. ..+...+.+-.+|...+.|+.|.....++.--    +.....
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            456666777777777766555544444432     11 22445666778888899999998887776521    113467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      .+|.+|.+..-+.+|..|.+++-+|+...|.+
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            88899999999999999999999999999983

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.81  E-value=7.3  Score=36.33  Aligned_cols=70  Identities=19%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHH
Q 008730           31 SQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        31 ~~Al~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      ++|...|-++ +-.|  ++++..+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.++..+++++.|-
T Consensus       123 ~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4555555442 2233  46888888887665 67889999999999998554    5899999999999999999985

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.35  E-value=53  Score=36.63  Aligned_cols=108  Identities=20%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---
Q 008730           11 VSRAEELKALANEAF-RAKKYSQAIDLYSQAIELNSQ--NA----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---   80 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~-~~g~~~~Al~~~~~al~~~p~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---   80 (556)
                      ...+.....+|..++ ...+++.|..++.+++.+...  ..    .+-+.++.++.+.+... |...++++++..-.   
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            456888999999998 779999999999999888744  22    23445677777777766 99999999987544   


Q ss_pred             -ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Q 008730           81 -YPKGYYRRGAA--YLAMGKFKEALKDFQQVKKLS--PNDPDAA  119 (556)
Q Consensus        81 -~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~l~--p~~~~~~  119 (556)
                       .+...+++-.+  +...+++..|++.++......  +.++.+.
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence             23333444322  223379999999999998886  4555543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=80.17  E-value=1.1  Score=45.07  Aligned_cols=84  Identities=17%  Similarity=0.040  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      .....+.+..-++.+.+..|+.....+++.+++...+++.++..+..+.++++|++++..+....|++....-.+..+-.
T Consensus       275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            34455678888899999999999999999999999999999999999999999999999999999998776655554444


Q ss_pred             HcCC
Q 008730           94 AMGK   97 (556)
Q Consensus        94 ~~g~   97 (556)
                      ...+
T Consensus       355 ~~~~  358 (372)
T KOG0546|consen  355 KKKQ  358 (372)
T ss_pred             HHHH
Confidence            4433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	556
1wao_1	477	Pp5 Structure Length = 477		1e-120
1s95_A	333	Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5		1e-119
3h60_A	315	Catalytic Domain Of Human SerineTHREONINE PHOSPHATA		1e-116
3icf_A	335	Structure Of Protein SerineTHREONINE PHOSPHATASE FR		1e-76
2o8a_A	329	Rat Pp1cgamma Complexed With Mouse Inhibitor-2 Leng		3e-59
1jk7_A	323	Crystal Structure Of The Tumor-Promoter Okadaic Aci		3e-59
1fjm_A	330	Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isofor		3e-59
4g9j_A	331	Protein SerTHR PHOSPHATASE-1 In Complex With Cell-P		3e-59
3n5u_B	300	Crystal Structure Of An Rb C-Terminal Peptide Bound		4e-59
3egg_A	329	Crystal Structure Of A Complex Between Protein Phos		4e-59
3v4y_A	306	Crystal Structure Of The First Nuclear Pp1 Holoenzy		5e-59
3e7a_A	299	Crystal Structure Of Protein Phosphatase-1 Bound To		5e-59
1u32_A	293	Crystal Structure Of A Protein Phosphatase-1: Calci		3e-58
1s70_A	330	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-57
1aui_A	521	Human Calcineurin Heterodimer Length = 521		7e-57
1m63_A	372	Crystal Structure Of Calcineurin-Cyclophilin-Cyclos		2e-56
2p6b_A	383	Crystal Structure Of Human Calcineurin In Complex W		2e-56
1mf8_A	373	Crystal Structure Of Human Calcineurin Complexed Wi		2e-56
3ll8_A	357	Crystal Structure Of Calcineurin In Complex With Ak		2e-56
1tco_A	375	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-56
2jog_A	327	Structure Of The Calcineurin-Nfat Complex Length =		5e-56
3p71_C	304	Crystal Structure Of The Complex Of Lcmt-1 And Pp2a		5e-54
2nyl_C	293	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		4e-53
2ie3_C	309	Structure Of The Protein Phosphatase 2a Core Enzyme		5e-53
2ie4_C	309	Structure Of The Protein Phosphatase 2a Core Enzyme		5e-53
3c5w_C	310	Complex Between Pp2a-Specific Methylesterase Pme-1		5e-53
3fga_C	309	Structural Basis Of Pp2a And Sgo Interaction Length		2e-52
2iae_C	309	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		2e-52
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		5e-38
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		8e-33
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-16
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-16
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		3e-13
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		8e-13
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		9e-13
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		4e-12
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		1e-11
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-11
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-11
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		4e-11
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-10
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-10
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		7e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		9e-10
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-08
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		4e-08
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		7e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		4e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		7e-05
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		4e-08
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		7e-08
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		1e-07
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-07
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-06
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-06
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		9e-05
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		8e-05
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		1e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		1e-04
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		2e-04
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		2e-04
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		3e-04
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		4e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 250/327 (76%)
Query: 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
           + +E +YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+ 
Sbjct: 148 MTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVET 207
Query: 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
            + + +  TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF F
Sbjct: 208 TLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGF 267
Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           K + P   +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV 
Sbjct: 268 KLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVL 327
Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           ++HGGLFS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG D
Sbjct: 328 IMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPD 387
Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 527
           VTK FL++N+LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L
Sbjct: 388 VTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDL 447
Query: 528 KPNIVTFAAVPHPDVKPMAYANNFLRM 554
           +P    F AVPHP+VKPMAYAN  L++
Sbjct: 448 RPQFHQFTAVPHPNVKPMAYANTLLQL 474

>pdb|1S95|A Chain A, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5 Length = 333

Iteration: 1
 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 250/327 (76%)
Query: 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287
           + +E +YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+ 
Sbjct: 4   MTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVET 63
Query: 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
            + + +  TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF F
Sbjct: 64  TLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGF 123
Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           K + P   +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV 
Sbjct: 124 KLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVL 183
Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           ++HGGLFS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG D
Sbjct: 184 IMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPD 243
Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 527
           VTK FL++N+LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L
Sbjct: 244 VTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDL 303
Query: 528 KPNIVTFAAVPHPDVKPMAYANNFLRM 554
           +P    F AVPHP+VKPMAYAN  L++
Sbjct: 304 RPQFHQFTAVPHPNVKPMAYANTLLQL 330

>pdb|3H60|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5 (Pp5c)with Two Mn2+ Atoms Length = 315

Iteration: 1
 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 190/315 (60%), Positives = 242/315 (76%)
Query: 234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 293
           YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+  + + +
Sbjct: 1   YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60
Query: 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 353
             TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF FK + P 
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120
Query: 354 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 413
             +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV ++HGGL
Sbjct: 121 HFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGL 180
Query: 414 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 473
           FS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG DVTK FL
Sbjct: 181 FSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240
Query: 474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVT 533
           ++N+LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L+P    
Sbjct: 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQ 300
Query: 534 FAAVPHPDVKPMAYA 548
           F AVPHP+VKPMAYA
Sbjct: 301 FTAVPHPNVKPMAYA 315

>pdb|3ICF|A Chain A, Structure Of Protein SerineTHREONINE PHOSPHATASE FROM SACCHAROMYCES Cerevisiae With Similarity To Human Phosphatase Pp5 Length = 335

Iteration: 1
 Score =  284 bits (726), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/330 (46%), Positives = 200/330 (60%), Gaps = 17/330 (5%)
Query: 234 YSGARIEGDVITLDFVKKMMDD-FKNQKCLHKRYAFQIVLQTREMLRALPSLVDID---I 289
           + GA+I+    + +F+ K ++D F   K L K+Y   I+     + R  PS V+++    
Sbjct: 4   FKGAKIKN--XSQEFISKXVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSXVELENNST 61
Query: 290 PDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKC 349
           PD K  +VCGD HGQFYD+LN+F   G    ++ YLFNGDFVDRGS+S EV L  +  K 
Sbjct: 62  PDVK-ISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKI 120
Query: 350 MCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVV 409
           + P+  +L+RGNHES + NKIYGFE E + K S+     FA+ F  LPLA ++N    V 
Sbjct: 121 LHPNNFFLNRGNHESDNXNKIYGFEDECKYKYSQRIFNXFAQSFESLPLATLINNDYLVX 180
Query: 410 HGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVT 469
           HGGL S     LSD K IDRF +PP +G   ELLW+DPQ   G GPS+RG+G +FG D+T
Sbjct: 181 HGGLPSDPSATLSDFKNIDRFAQPPRDGAFXELLWADPQEANGXGPSQRGLGHAFGPDIT 240
Query: 470 KRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF------- 522
            RFL++N L  + RSHE++  G + E  GKL TVFSAPNYCD  GN G  I         
Sbjct: 241 DRFLRNNKLRKIFRSHELRXGGVQFEQKGKLXTVFSAPNYCDSQGNLGGVIHVVPGHGIL 300
Query: 523 -EAPTLKPNIV--TFAAVPHPDVKPMAYAN 549
                   N++  TF AV HPD+KP AY+N
Sbjct: 301 QAGRNDDQNLIIETFEAVEHPDIKPXAYSN 330

>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2 Length = 329

Iteration: 1
 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 44  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 98
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 99  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 158
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 159 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 217
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 218 DVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 277
Query: 509 YCDQMGNKGAFI 520
           YC +  N GA +
Sbjct: 278 YCGEFDNAGAMM 289

>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound To Protein Phosphatase-1 Length = 323

Iteration: 1
 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 38  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 92
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 93  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 152
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 153 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 211
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 212 DVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 271
Query: 509 YCDQMGNKGAFI 520
           YC +  N GA +
Sbjct: 272 YCGEFDNAGAMM 283

>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type 1) Complexed With Microcystin-Lr Toxin Length = 330

Iteration: 1
 Score =  226 bits (575), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 38  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 92
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 93  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 152
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 153 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 211
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 212 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 271
Query: 509 YCDQMGNKGAFI 520
           YC +  N GA +
Sbjct: 272 YCGEFDNAGAMM 283

>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With Cell-Permeable Peptide Length = 331

Iteration: 1
 Score =  226 bits (575), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 39  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 93
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 94  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 153
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 154 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 212
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 213 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 272
Query: 509 YCDQMGNKGAFI 520
           YC +  N GA +
Sbjct: 273 YCGEFDNAGAMM 284

>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Spinophilin Length = 329

Iteration: 1
 Score =  225 bits (574), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 37  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 91
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 92  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 151
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 152 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 210
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 211 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 270
Query: 509 YCDQMGNKGAFI 520
           YC +  N GA +
Sbjct: 271 YCGEFDNAGAMM 282

>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme Length = 306

Iteration: 1
 Score =  225 bits (573), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 37  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 91
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 92  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 151
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 152 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 210
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 211 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 270
Query: 509 YCDQMGNKGAFI 520
           YC +  N GA +
Sbjct: 271 YCGEFDNAGAMM 282

>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The Natural Toxin Nodularin-R Length = 299

Iteration: 1
 Score =  225 bits (573), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 37  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 91
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 92  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 151
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 152 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 210
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 211 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 270
Query: 509 YCDQMGNKGAFI 520
           YC +  N GA +
Sbjct: 271 YCGEFDNAGAMM 282

>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin Hybrid Bound To Okadaic Acid Length = 293

Iteration: 1
 Score =  222 bits (566), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 163/252 (64%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 33  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 87
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 88  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 147
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 148 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 206
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 207 DVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 266
Query: 509 YCDQMGNKGAFI 520
           Y D   N GA +
Sbjct: 267 YLDVYNNAGAMM 278

>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 330

Iteration: 1
 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/252 (42%), Positives = 161/252 (63%), Gaps = 7/252 (2%)
Query: 270 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329
           + +++RE+  + P L++++ P      +CGD+HGQ+ DLL +FE  G P E N YLF GD
Sbjct: 40  LCIKSREIFLSQPILLELEAP----LKICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGD 94
Query: 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 389
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 95  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTF 154
Query: 390 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 448
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P+ GL+C+LLWSDP +
Sbjct: 155 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDK 213
Query: 449 PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPN 508
            + G G + RGV  +FGADV  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAPN
Sbjct: 214 DVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 273
Query: 509 YCDQMGNKGAFI 520
           YC +  N G  +
Sbjct: 274 YCGEFDNAGGMM 285

>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer Length = 521

Iteration: 1
 Score =  218 bits (555), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 56  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 111
Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 112 R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 170
Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 171 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 229
Query: 442 LLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493
           +LWSDP    G   ++        RG    +       FLQ N+L  ++R+HE +D GY 
Sbjct: 230 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 289
Query: 494 IEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 547
           +    +      LIT+FSAPNY D   NK A +++E   +  NI  F   PHP   P   
Sbjct: 290 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHPYWLP--- 344
Query: 548 ANNFLRMF 555
             NF+ +F
Sbjct: 345 --NFMDVF 350

>pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition Of Immunophilin-Drug Complexes Length = 372

Iteration: 1
 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 56  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 111
Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 112 R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 170
Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 171 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 229
Query: 442 LLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493
           +LWSDP    G   ++        RG    +       FLQ N+L  ++R+HE +D GY 
Sbjct: 230 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 289
Query: 494 IEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 547
           +    +      LIT+FSAPNY D   NK A +++E   +  NI  F   PHP   P   
Sbjct: 290 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHPYWLP--- 344
Query: 548 ANNFLRMF 555
             NF+ +F
Sbjct: 345 --NFMDVF 350

>pdb|2P6B|A Chain A, Crystal Structure Of Human Calcineurin In Complex With Pvivit Peptide Length = 383

Iteration: 1
 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 59  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 114
Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 115 R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 173
Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 174 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 232
Query: 442 LLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493
           +LWSDP    G   ++        RG    +       FLQ N+L  ++R+HE +D GY 
Sbjct: 233 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 292
Query: 494 IEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 547
           +    +      LIT+FSAPNY D   NK A +++E   +  NI  F   PHP   P   
Sbjct: 293 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHPYWLP--- 347
Query: 548 ANNFLRMF 555
             NF+ +F
Sbjct: 348 --NFMDVF 353

>pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin Complexed With Cyclosporin A And Human Cyclophilin Length = 373

Iteration: 1
 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 37  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 92
Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 93  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 151
Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 152 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 210
Query: 442 LLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493
           +LWSDP    G   ++        RG    +       FLQ N+L  ++R+HE +D GY 
Sbjct: 211 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 270
Query: 494 IEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 547
           +    +      LIT+FSAPNY D   NK A +++E   +  NI  F   PHP   P   
Sbjct: 271 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHPYWLP--- 325
Query: 548 ANNFLRMF 555
             NF+ +F
Sbjct: 326 --NFMDVF 331

>pdb|3LL8|A Chain A, Crystal Structure Of Calcineurin In Complex With Akap79 Peptide Length = 357

Iteration: 1
 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 43  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 98
Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 99  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 157
Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 158 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 216
Query: 442 LLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493
           +LWSDP    G   ++        RG    +       FLQ N+L  ++R+HE +D GY 
Sbjct: 217 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 276
Query: 494 IEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 547
           +    +      LIT+FSAPNY D   NK A +++E   +  NI  F   PHP   P   
Sbjct: 277 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHPYWLP--- 331
Query: 548 ANNFLRMF 555
             NF+ +F
Sbjct: 332 --NFMDVF 337

>pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 375

Iteration: 1
 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 39  LEETVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 94
Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 95  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 153
Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 154 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 212
Query: 442 LLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493
           +LWSDP    G   ++        RG    +       FLQ N+L  ++R+HE +D GY 
Sbjct: 213 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 272
Query: 494 IEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 547
           +    +      LIT+FSAPNY D   NK A +++E   +  NI  F   PHP   P   
Sbjct: 273 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHPYWLP--- 327
Query: 548 ANNFLRMF 555
             NF+ +F
Sbjct: 328 --NFMDVF 333

>pdb|2JOG|A Chain A, Structure Of The Calcineurin-Nfat Complex Length = 327

Iteration: 1
 Score =  215 bits (547), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 170/297 (57%), Gaps = 22/297 (7%)
Query: 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 321
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 36  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 91
Query: 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 381
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 92  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 150
Query: 382 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 441
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 151 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 209
Query: 442 LLWSDPQPLPGRGPSK--------RGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493
           +LWSDP    G   ++        RG    +       FLQ N+L  ++R+HE +D GY 
Sbjct: 210 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 269
Query: 494 IEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP 544
           +    +      LIT+FSAPNY D   NK A +++E   +  NI  F   PHP   P
Sbjct: 270 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHPYWLP 324

>pdb|3P71|C Chain C, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a Length = 304

Iteration: 1
 Score =  208 bits (530), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 161/269 (59%), Gaps = 10/269 (3%)
Query: 273 QTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVD 332
           + +E+L    ++ ++  P     TVCGDVHGQF+DL+ +F + G   + N YLF GD+VD
Sbjct: 34  KAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVD 88
Query: 333 RGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAE 391
           RG +SVE +  L A K      I + RGNHES+ + ++YGF  E   K     V + F +
Sbjct: 89  RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTD 148
Query: 392 VFCCLPLAHVLNQKVFVVHGGLF-SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 450
           +F  LPL  +++ ++F +HGGL  S+D   L  I+ +DR  E P EG MC+LLWSDP   
Sbjct: 149 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 206
Query: 451 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
            G G S RG G +FG D+++ F   N L LV R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 207 GGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266
Query: 511 DQMGNKGAFIRFEAPTLKPNIVTFAAVPH 539
            + GN+ A +  +  TLK + + F   PH
Sbjct: 267 YRCGNQAAIMELD-DTLKYSFLQFDPAPH 294

>pdb|2NYL|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 293

Iteration: 1
 Score =  205 bits (522), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 111/268 (41%), Positives = 160/268 (59%), Gaps = 10/268 (3%)
Query: 273 QTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVD 332
           + +E+L    ++ ++  P     TVCGDVHGQF+DL+ +F + G   + N YLF GD+VD
Sbjct: 33  KAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVD 87
Query: 333 RGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAE 391
           RG +SVE +  L A K      I + RGNHES+ + ++YGF  E   K     V + F +
Sbjct: 88  RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTD 147
Query: 392 VFCCLPLAHVLNQKVFVVHGGLF-SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 450
           +F  LPL  +++ ++F +HGGL  S+D   L  I+ +DR  E P EG MC+LLWSDP   
Sbjct: 148 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 205
Query: 451 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
            G G S RG G +FG D+++ F   N L LV R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 206 GGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 265
Query: 511 DQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
            + GN+ A +  +  TLK + + F   P
Sbjct: 266 YRCGNQAAIMELD-DTLKYSFLQFDPAP 292

>pdb|2IE3|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 309

Iteration: 1
 Score =  205 bits (522), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 111/268 (41%), Positives = 160/268 (59%), Gaps = 10/268 (3%)
Query: 273 QTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVD 332
           + +E+L    ++ ++  P     TVCGDVHGQF+DL+ +F + G   + N YLF GD+VD
Sbjct: 34  KAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVD 88
Query: 333 RGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAE 391
           RG +SVE +  L A K      I + RGNHES+ + ++YGF  E   K     V + F +
Sbjct: 89  RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTD 148
Query: 392 VFCCLPLAHVLNQKVFVVHGGLF-SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 450
           +F  LPL  +++ ++F +HGGL  S+D   L  I+ +DR  E P EG MC+LLWSDP   
Sbjct: 149 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 206
Query: 451 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
            G G S RG G +FG D+++ F   N L LV R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 207 GGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266
Query: 511 DQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
            + GN+ A +  +  TLK + + F   P
Sbjct: 267 YRCGNQAAIMELD-DTLKYSFLQFDPAP 293

>pdb|2IE4|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Okadaic Acid Length = 309

Iteration: 1
 Score =  205 bits (522), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 111/268 (41%), Positives = 160/268 (59%), Gaps = 10/268 (3%)
Query: 273 QTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVD 332
           + +E+L    ++ ++  P     TVCGDVHGQF+DL+ +F + G   + N YLF GD+VD
Sbjct: 34  KAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVD 88
Query: 333 RGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAE 391
           RG +SVE +  L A K      I + RGNHES+ + ++YGF  E   K     V + F +
Sbjct: 89  RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTD 148
Query: 392 VFCCLPLAHVLNQKVFVVHGGLF-SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 450
           +F  LPL  +++ ++F +HGGL  S+D   L  I+ +DR  E P EG MC+LLWSDP   
Sbjct: 149 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 206
Query: 451 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
            G G S RG G +FG D+++ F   N L LV R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 207 GGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266
Query: 511 DQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
            + GN+ A +  +  TLK + + F   P
Sbjct: 267 YRCGNQAAIMELD-DTLKYSFLQFDPAP 293

>pdb|3C5W|C Chain C, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 310

Iteration: 1
 Score =  205 bits (522), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 111/268 (41%), Positives = 160/268 (59%), Gaps = 10/268 (3%)
Query: 273 QTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVD 332
           + +E+L    ++ ++  P     TVCGDVHGQF+DL+ +F + G   + N YLF GD+VD
Sbjct: 35  KAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVD 89
Query: 333 RGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAE 391
           RG +SVE +  L A K      I + RGNHES+ + ++YGF  E   K     V + F +
Sbjct: 90  RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTD 149
Query: 392 VFCCLPLAHVLNQKVFVVHGGLF-SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 450
           +F  LPL  +++ ++F +HGGL  S+D   L  I+ +DR  E P EG MC+LLWSDP   
Sbjct: 150 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 207
Query: 451 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
            G G S RG G +FG D+++ F   N L LV R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 208 GGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 267
Query: 511 DQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
            + GN+ A +  +  TLK + + F   P
Sbjct: 268 YRCGNQAAIMELD-DTLKYSFLQFDPAP 294

>pdb|3FGA|C Chain C, Structural Basis Of Pp2a And Sgo Interaction Length = 309

Iteration: 1
 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/268 (41%), Positives = 160/268 (59%), Gaps = 10/268 (3%)
Query: 273 QTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVD 332
           + +E+L    ++ ++  P     TVCGDVHGQF+DL+ +F + G   + N YLF GD+V+
Sbjct: 34  KAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVN 88
Query: 333 RGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAE 391
           RG +SVE +  L A K      I + RGNHES+ + ++YGF  E   K     V + F +
Sbjct: 89  RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTD 148
Query: 392 VFCCLPLAHVLNQKVFVVHGGLF-SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 450
           +F  LPL  +++ ++F +HGGL  S+D   L  I+ +DR  E P EG MC+LLWSDP   
Sbjct: 149 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 206
Query: 451 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
            G G S RG G +FG D+++ F   N L LV R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 207 GGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266
Query: 511 DQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
            + GN+ A +  +  TLK + + F   P
Sbjct: 267 YRCGNQAAIMELD-DTLKYSFLQFDPAP 293

>pdb|2IAE|C Chain C, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 309

Iteration: 1
 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/268 (41%), Positives = 160/268 (59%), Gaps = 10/268 (3%)
Query: 273 QTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVD 332
           + +E+L    ++ ++  P     TVCGDVHGQF+DL+ +F + G   + N YLF GD+V+
Sbjct: 34  KAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVN 88
Query: 333 RGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAE 391
           RG +SVE +  L A K      I + RGNHES+ + ++YGF  E   K     V + F +
Sbjct: 89  RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTD 148
Query: 392 VFCCLPLAHVLNQKVFVVHGGLF-SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 450
           +F  LPL  +++ ++F +HGGL  S+D   L  I+ +DR  E P EG MC+LLWSDP   
Sbjct: 149 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 206
Query: 451 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510
            G G S RG G +FG D+++ F   N L LV R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 207 GGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266
Query: 511 DQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
            + GN+ A +  +  TLK + + F   P
Sbjct: 267 YRCGNQAAIMELD-DTLKYSFLQFDPAP 293

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
           + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66
Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K
Sbjct: 67  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126
Query: 128 AVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSS 164
            VK+  FE AIA  E +R SV DS+D +S+ +    S
Sbjct: 127 IVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYS 162

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           + AE LK   NE  + + +  A+  Y +AIELN  NAVY+ NRA A++KL  Y  A+QD 
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +AI IDP Y K Y R G A  ++ K  EA+  +++  +L P++      +K     + +
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK-----IAE 124
Query: 132 LKFEEA 137
           LK  EA
Sbjct: 125 LKLREA 130

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 65/109 (59%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE  K L N  ++   Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   K
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           A+E+DP   K +YRRG AY   G +++A++D+Q+  +L PN+  A Q +
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 67/112 (59%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+E K   NE F+   Y  A+  Y++A++ + +NA+ Y+NRA   TKL E+  A+ D   
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
            I +D ++ KGY R+ A  +AM ++ +A + ++   ++ P++ +A + V+ C
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 61/109 (55%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE    L N  ++   Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           A+E+DP   + +Y  G AY   G + EA++ +Q+  +L PN+ +A Q +
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 65/109 (59%)
Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           +K   NE F+   Y QA+  Y++AI+ N ++A  Y+NRA  +TKL E+  A++D  + I+
Sbjct: 19  VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           ++P + KGY R+ AA  AM  + +A+  +Q+   L  +  +AA   + C
Sbjct: 79  LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS---QNAVYYANRAFA 57
            P         S  E+L+   NE F+   Y  A+  Y+QA+ L++     AV + NRA  
Sbjct: 15  TPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC 74
Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
           H KLE+Y  A  +ASKAIE D    K  YRR  A   +G+  +A+ D Q+   L P +
Sbjct: 75  HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 64/116 (55%)
Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
           + +  ELK   N+A        A+  YS+AI+L+  N V Y+NR+ A+ K  +Y  A +D
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
             K +++ P + KGY R+ AA   + +F+EA + +++  K   N+P   + ++  E
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 59/105 (56%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE    L N  ++   Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   K
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+E+DPR  + +Y  G AY   G + EA++ +Q+  +L P   +A
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 59/109 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE    L N  ++   Y +AI+ Y +A+EL   NA  + N   A+ K  +Y  AI+   K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           A+E+ P   + +Y  G AY   G + EA++ +Q+  +L PN+ +A Q +
Sbjct: 69  ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           +++LK+  N A   K+YS+AIDLY+QA+ +   N +Y +NRA A++   ++  A +DA  
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A  +DP+Y K + R G A   M  +K A + +++
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 38  SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97
           +QA+ L S     + N A  H KL+ + +AI+  +KA+E+D    KG +RRG A+LA+  
Sbjct: 191 AQALRLAS-----HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVND 245
Query: 98  FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
           F+ A  DFQ+V +L PN+  A  ++  C++ +++
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 38  SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97
           +QA+ L S     + N A  H KL+ + +AI+  +KA+E+D    KG  RRG A+LA+  
Sbjct: 191 AQALRLAS-----HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245
Query: 98  FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
           F+ A  DFQ+V +L PN+  A  ++  C++ +++
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 25  FRAKKYSQAIDLYSQAI----------ELNSQNA-----VYYANRAFAHTKLEEYGSAIQ 69
           F+  KY QA+  Y + +          E  S+ +       + N A  + KL EY  A++
Sbjct: 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129
              KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  A  ++  C+K  
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398
Query: 130 KK 131
           K+
Sbjct: 399 KE 400

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A +LK   N  F AK +++AI  Y  AIEL+    V+Y+N +  +    +    I+  +K
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           A+EI P + K   RR +A  ++G F +A+ D 
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDL 116

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
           KA++++P YP  YY RG  Y  +  +K A +DFQ+ + L+P +
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A +LK   N  F AK +++AI  Y  AIEL+    V+Y+N +  +    +    I+  +K
Sbjct: 21  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           A+EI P + K   RR +A  ++G F +A+ D 
Sbjct: 81  ALEIKPDHSKALLRRASANESLGNFTDAMFDL 112

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
           KA++++P YP  YY RG  Y  +  +K A +DFQ+ + L+P +
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           LK   N+ FR KKY  AI  Y+ A+EL  ++ V+Y+N +  +  + +    ++ ++KA+E
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           + P Y K   RR +A   +GKF +A+ D 
Sbjct: 68  LKPDYSKVLLRRASANEGLGKFADAMFDL 96

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 25  FRAKKYSQAIDLYSQAI----------ELNSQNA-----VYYANRAFAHTKLEEYGSAIQ 69
           F+  KY QA+  Y + +          E  S+ +       + N A  + KL EY  A++
Sbjct: 279 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129
              KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  A  ++  C+K  
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 398
Query: 130 KK 131
           K+
Sbjct: 399 KE 400

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +AEE +    E F    +  A+  Y++ I+   ++A  Y+NRA A  KL  +  AI D +
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALK--DFQQVKKLSPNDPDAAQKV 122
           KAIE DP + + Y R+  A +A+ ++  AL+  D  + K    N+  +A+++
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           S A++ KA  N+ ++A+++ +AI+ Y++A EL+ ++  Y  NRA A  +  EY +AI   
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTL 61
Query: 72  SKAI----EIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVK 123
           + A+    E+   Y    K + R G AY  +G  K+ ++ +Q  K L+ +   D   K++
Sbjct: 62  NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ--KSLTEHRTADILTKLR 119
Query: 124 ECEKAVKKLKFE 135
             EK +KK + E
Sbjct: 120 NAEKELKKAEAE 131

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 44  NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
           NS  A Y  N   A+ K  +Y  AI+   KA+E+DP   + +Y  G AY   G + EA++
Sbjct: 7   NSAEAWY--NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 104 DFQQVKKLSPNDPDAAQKV 122
            +Q+  +L PN+ +A Q +
Sbjct: 65  YYQKALELDPNNAEAKQNL 83

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYA--------------NRAFA 57
           +E+LK + N  F+++ +  AI  Y++ +     S+ A   A              N    
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
             K+ ++  A+    +A+EIDP   K  YRR   +  + ++ +AL D ++ ++++P D  
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
Query: 118 AAQKVKECEKAVKKLKFEEAIA 139
              ++ + ++ +K  K +E  A
Sbjct: 343 IQAELLKVKQKIKAQKDKEKAA 364

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
          AE    L N  ++   Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   K
Sbjct: 3  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 74 AIEIDPR 80
          A+E+DPR
Sbjct: 63 ALELDPR 69

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           +A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y  G AY   G + EA++ +Q
Sbjct: 2   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 107 QVKKLSP 113
           +  +L P
Sbjct: 62  KALELDP 68

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA+   +  K  +A+  Y +AI ++   A  Y+N      ++++   A+Q  ++AI+I+P
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129
            +   +    + +   G   EA+  ++   KL P+ PDA   +  C + V
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE-------------LNSQNAVYYA 52
           T+   V  A ++K   NE F+  + ++AI  Y +A++             L+ +  +  +
Sbjct: 30  TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89
Query: 53  ---NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
              N A  + K ++Y  AI  ASK ++ID    K  Y+ G A +  G  +EA ++  +  
Sbjct: 90  CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149
Query: 110 KLSPNDPDAAQKVKECEKAVKKLK 133
            L+PN+ D     + C   V KLK
Sbjct: 150 SLNPNNLDIRNSYELC---VNKLK 170

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69
          +S+ E+ K   N  F+   Y +A+  Y Q I    QN V Y+N+A A  KL EY  AIQ
Sbjct: 1  MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 22/124 (17%)
Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K L N A++ K + +A   Y +AIEL+  N  +Y N+A  + + +++   +Q   KA+E+
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 78  DPR-------YPKGYYRRGAAY-------LAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123
                       K   R G A+       LA+  F  +L +F+        DP+  +KVK
Sbjct: 72  GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR--------DPELVKKVK 123
Query: 124 ECEK 127
           E EK
Sbjct: 124 ELEK 127

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   KAIE+
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 78  ------DPRY-PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
                 D R   K Y R G +Y    K+K+A+  F          PD    +K+C++A K
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRTPDV---LKKCQQAEK 123
Query: 131 KLKFEEAI 138
            LK +E +
Sbjct: 124 ILKEQERL 131

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   KAIE+
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 78  ------DPRY-PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
                 D R   K Y R G +Y    K+K+A+  F          PD  +K ++ EK +K
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRTPDVLKKCQQAEKILK 126

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 41/94 (43%)
Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           + AE    L +  F   +   AID   +AI LN+  A  Y      +  + E+  AI+  
Sbjct: 71  TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAY 130
Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
            K I I P + + Y   G AY   G   EA+K F
Sbjct: 131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	556
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	0.0
3h63_A	315	Serine/threonine-protein phosphatase 5; metalloenz	0.0
3icf_A	335	PPT, serine/threonine-protein phosphatase T; IRO m	0.0
3ll8_A	357	Serine/threonine-protein phosphatase 2B catalytic	1e-120
1aui_A	521	Calcineurin, serine/threonine phosphatase 2B; hydr	1e-115
2ie4_C	309	PP2A-alpha;, serine/threonine-protein phosphatase	1e-112
1fjm_A	330	Protein serine/threonine phosphatase-1 (alpha ISO	1e-110
3e7a_A	299	PP-1A, serine/threonine-protein phosphatase PP1-al	1e-109
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	5e-67
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-56
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	9e-56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-42
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-40
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-40
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-37
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-34
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-30
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-32
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-30
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-08
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-31
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-26
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-23
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-36
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-29
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-25
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-31
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-30
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-27
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-26
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-26
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-26
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-25
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-24
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-23
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-21
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-11
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-22
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-21
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
2z72_A	342	Protein-tyrosine-phosphatase; cold-active enzyme,	1e-24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-24
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-24
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-20
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-24
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-23
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-20
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-20
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-22
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-21
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-21
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-20
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-20
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-19
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-21
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-19
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-20
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-18
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-18
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-16
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-14
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-16
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04
1g5b_A	221	Serine/threonine protein phosphatase; bacteriophag	3e-15
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-14
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-13
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-13
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-10
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-07
2qjc_A	262	Diadenosine tetraphosphatase, putative; putative d	1e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	7e-04
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	2e-07
2dfj_A	280	Diadenosinetetraphosphatase; helices and strands m	3e-07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	1e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	7e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	9e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	4e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-04

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  612 bits (1580), Expect = 0.0
 Identities = 240/548 (43%), Positives = 320/548 (58%), Gaps = 74/548 (13%)

Query: 9   SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI 68
            ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A           
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLA----------- 49

Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
                                  YL    +  AL D              A +  E +K 
Sbjct: 50  -----------------------YLRTECYGYALGD--------------ATRAIELDKK 72

Query: 129 VKKLKFEEAIAVPESERHSVADSIDYQSIG-MSPSSSFVSTQAAILAATATVVVAVVVMV 187
             K  +  A +     +   A   DY+++  + P       + A +       +      
Sbjct: 73  YIKGYYRRAASNMALGKFRAALR-DYETVVKVKPHD-----KDAKMKYQECNKIVKQKAF 126

Query: 188 WPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLD 247
             A+A       V   + + +                   + +E +YSG ++E   +T+ 
Sbjct: 127 ERAIAGDEHKRSVVDSLDIES-------------------MTIEDEYSGPKLEDGKVTIS 167

Query: 248 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYD 307
           F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYD
Sbjct: 168 FMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYD 227

Query: 308 LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 367
           LLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +M
Sbjct: 228 LLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNM 287

Query: 368 NKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTI 427
           N+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I
Sbjct: 288 NQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKI 347

Query: 428 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 487
           +R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG DVTK FL++N+LD ++RSHEV
Sbjct: 348 ERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEV 407

Query: 488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 547
           K EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L+P    F AVPHP+VKPMAY
Sbjct: 408 KAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAY 467

Query: 548 ANNFLRMF 555
           AN  L++ 
Sbjct: 468 ANTLLQLG 475

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A Length = 315

 Score =  553 bits (1428), Expect = 0.0
 Identities = 190/315 (60%), Positives = 242/315 (76%)

Query: 234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 293
           YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+  + + +
Sbjct: 1   YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60

Query: 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 353
             TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF FK + P 
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120

Query: 354 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 413
             +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV ++HGGL
Sbjct: 121 HFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGL 180

Query: 414 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 473
           FS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG DVTK FL
Sbjct: 181 FSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240

Query: 474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVT 533
           ++N+LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L+P    
Sbjct: 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQ 300

Query: 534 FAAVPHPDVKPMAYA 548
           F AVPHP+VKPMAYA
Sbjct: 301 FTAVPHPNVKPMAYA 315

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae} Length = 335

 Score =  527 bits (1360), Expect = 0.0
 Identities = 152/337 (45%), Positives = 205/337 (60%), Gaps = 15/337 (4%)

Query: 231 EPQYSGARIEGDVITLDFVKKMMDD-FKNQKCLHKRYAFQIVLQTREMLRALPSLVDID- 288
           +  + GA+I+   ++ +F+ KM++D F   K L K+Y   I+     + R  PS+V+++ 
Sbjct: 1   KNAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELEN 58

Query: 289 -IPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 347
                   +VCGD HGQFYD+LN+F   G    ++ YLFNGDFVDRGS+S EV L  +  
Sbjct: 59  NSTPDVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCL 118

Query: 348 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407
           K + P+  +L+RGNHES +MNKIYGFE E + K S+    +FA+ F  LPLA ++N    
Sbjct: 119 KILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYL 178

Query: 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGAD 467
           V+HGGL S     LSD K IDRF +PP +G   ELLW+DPQ   G GPS+RG+G +FG D
Sbjct: 179 VMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPD 238

Query: 468 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF----- 522
           +T RFL++N L  + RSHE++  G + E  GKL+TVFSAPNYCD  GN G  I       
Sbjct: 239 ITDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHG 298

Query: 523 -----EAPTLKPNIVTFAAVPHPDVKPMAYANNFLRM 554
                        I TF AV HPD+KPMAY+N    +
Sbjct: 299 ILQAGRNDDQNLIIETFEAVEHPDIKPMAYSNGGFGL 335

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A Length = 357

 Score =  357 bits (918), Expect = e-120
 Identities = 123/321 (38%), Positives = 177/321 (55%), Gaps = 27/321 (8%)

Query: 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 308
           V  +      +  L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL
Sbjct: 30  VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDL 85

Query: 309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368
           + +FE+ G P+    YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + 
Sbjct: 86  MKLFEVGGSPANTR-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLT 144

Query: 369 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 428
           + + F+ E + K SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +D
Sbjct: 145 EYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLD 203

Query: 429 RFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVGLSFGADVTKRFLQDNSLDL 480
           RF EPP  G MC++LWSDP    G           + RG    +       FLQ N+L  
Sbjct: 204 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263

Query: 481 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 534
           ++R+HE +D GY +    +      LIT+FSAPNY D   NK A +++E   +  NI  F
Sbjct: 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQF 321

Query: 535 AAVPHPDVKPMAYANNFLRMF 555
              PHP   P     NF+ +F
Sbjct: 322 NCSPHPYWLP-----NFMDVF 337

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3 Length = 521

 Score =  351 bits (901), Expect = e-115
 Identities = 123/321 (38%), Positives = 177/321 (55%), Gaps = 27/321 (8%)

Query: 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 308
           V  +      +  L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL
Sbjct: 43  VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDL 98

Query: 309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368
           + +FE+ G P+    YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + 
Sbjct: 99  MKLFEVGGSPANTR-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLT 157

Query: 369 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 428
           + + F+ E + K SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +D
Sbjct: 158 EYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLD 216

Query: 429 RFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVGLSFGADVTKRFLQDNSLDL 480
           RF EPP  G MC++LWSDP    G           + RG    +       FLQ N+L  
Sbjct: 217 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 276

Query: 481 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 534
           ++R+HE +D GY +    +      LIT+FSAPNY D   NK A +++E   +  NI  F
Sbjct: 277 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQF 334

Query: 535 AAVPHPDVKPMAYANNFLRMF 555
              PHP   P     NF+ +F
Sbjct: 335 NCSPHPYWLP-----NFMDVF 350

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C* Length = 309

 Score =  336 bits (864), Expect = e-112
 Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%)

Query: 239 IEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVC 298
           ++  V T + + + ++     K L +     +  + +E+L    ++ ++  P     TVC
Sbjct: 1   MDEKVFTKE-LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVC 55

Query: 299 GDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS 358
           GDVHGQF+DL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I + 
Sbjct: 56  GDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERITIL 114

Query: 359 RGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVD 417
           RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL S  
Sbjct: 115 RGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGL-SPS 173

Query: 418 GVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNS 477
              L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +FG D+++ F   N 
Sbjct: 174 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANG 233

Query: 478 LDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV 537
           L LV R+H++  EGY   HD  ++T+FSAPNYC + GN+ A +  +  TLK + + F   
Sbjct: 234 LTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELD-DTLKYSFLQFDPA 292

Query: 538 PHPDVKPM 545
           P      +
Sbjct: 293 PRRGEPHV 300

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3 Length = 330

 Score =  330 bits (849), Expect = e-110
 Identities = 113/282 (40%), Positives = 170/282 (60%), Gaps = 8/282 (2%)

Query: 269 QIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328
            + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF G
Sbjct: 37  GLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLG 91

Query: 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 388
           D+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + 
Sbjct: 92  DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 151

Query: 389 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQ 448
           F + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP 
Sbjct: 152 FTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPD 210

Query: 449 P-LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAP 507
             + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAP
Sbjct: 211 KDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAP 270

Query: 508 NYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYAN 549
           NYC +  N GA +  +  TL  +            K   ++ 
Sbjct: 271 NYCGEFDNAGAMMSVDE-TLMCSFQILKPADKNKGKYGQFSG 311

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A* Length = 299

 Score =  326 bits (839), Expect = e-109
 Identities = 112/269 (41%), Positives = 167/269 (62%), Gaps = 8/269 (2%)

Query: 269 QIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328
            + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF G
Sbjct: 36  GLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLG 90

Query: 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 388
           D+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + 
Sbjct: 91  DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 150

Query: 389 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQ 448
           F + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP 
Sbjct: 151 FTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPD 209

Query: 449 P-LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAP 507
             + G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE     +L+T+FSAP
Sbjct: 210 KDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAP 269

Query: 508 NYCDQMGNKGAFIRFEAPTLKPNIVTFAA 536
           NYC +  N GA +  +  TL  +      
Sbjct: 270 NYCGEFDNAGAMMSVDE-TLMCSFQILKP 297

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  213 bits (545), Expect = 5e-67
 Identities = 78/160 (48%), Positives = 109/160 (68%), Gaps = 1/160 (0%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
           +    + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E
Sbjct: 2   DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
            YG A+ DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K 
Sbjct: 62  CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121

Query: 123 KECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPS 162
           +EC K VK+  FE AIA  E  + SV DS+D +S+ +   
Sbjct: 122 QECNKIVKQKAFERAIAGDE-HKRSVVDSLDIESMTIEDE 160

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  183 bits (467), Expect = 3e-56
 Identities = 36/117 (30%), Positives = 64/117 (54%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
           + +  ELK   N+A        A+  YS+AI+L+  N V Y+NR+ A+ K  +Y  A +D
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             K +++ P + KGY R+ AA   + +F+EA + +++  K   N+P   + ++  E 
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  183 bits (468), Expect = 4e-56
 Identities = 40/116 (34%), Positives = 67/116 (57%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            A  +K   NE F+   Y QA+  Y++AI+ N ++A  Y+NRA  +TKL E+  A++D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
           + I+++P + KGY R+ AA  AM  + +A+  +Q+   L  +  +AA   + C  A
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  183 bits (466), Expect = 6e-56
 Identities = 45/118 (38%), Positives = 68/118 (57%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE LK   NE  + + +  A+  Y +AIELN  NAVY+ NRA A++KL  Y  A+QD  +
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
           AI IDP Y K Y R G A  ++ K  EA+  +++  +L P++      +K  E  +++
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  184 bits (468), Expect = 9e-56
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 1/160 (0%)

Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
            +    +++LK+  N A   K+YS+AIDLY+QA+ +   N +Y +NRA A++   ++  A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
            +DA  A  +DP+Y K + R G A   M  +K A + +++  +   N    A K +  E 
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK-RGLET 123

Query: 128 AVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVS 167
             +K++     A P ++    A      + GM   SS  S
Sbjct: 124 TKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSLAS 163

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  182 bits (464), Expect = 1e-55
 Identities = 36/115 (31%), Positives = 68/115 (59%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            A+E K   NE F+   Y  A+  Y++A++ + +NA+ Y+NRA   TKL E+  A+ D  
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             I +D ++ KGY R+ A  +AM ++ +A + ++   ++ P++ +A + V+ C +
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  177 bits (451), Expect = 9e-54
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +AEE +    E F    +  A+  Y++ I+   ++A  Y+NRA A  KL  +  AI D +
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
           KAIE DP + + Y R+  A +A+ ++  AL+     +       + +   +E ++   K 
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKA 121

Query: 133 KFE 135
             +
Sbjct: 122 SQQ 124

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  177 bits (450), Expect = 2e-53
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN---SQNAVYYANRAFAH 58
           P         S  E+L+   NE F+   Y  A+  Y+QA+ L+      AV + NRA  H
Sbjct: 16  PEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH 75

Query: 59  TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            KLE+Y  A  +ASKAIE D    K  YRR  A   +G+  +A+ D Q+   L P +   
Sbjct: 76  LKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

Query: 119 AQKVKECEKAV 129
            + ++      
Sbjct: 136 QEALRNISGPS 146

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  175 bits (445), Expect = 8e-53
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-AQKVKECEKAVKK 131
           +A+E+D +  K ++  G   L M  + EA+ + Q+   L+          +    +  KK
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127

Query: 132 LKFEEAIAVPESER 145
            ++       E  R
Sbjct: 128 KRWNS----IEERR 137

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  169 bits (430), Expect = 9e-49
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP-NDPDAAQKVKECEKAVKKL 132
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+     +    +    +  KK 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123

Query: 133 KFEE 136
           ++  
Sbjct: 124 RWNS 127

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  163 bits (415), Expect = 2e-48
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +A + K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 73  KAIEIDP-------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           KAIE+         +  K Y R G +Y    K+K+A+  + +        PD  +K ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121

Query: 126 EKAVKKLK 133
           EK +K+ +
Sbjct: 122 EKILKEQE 129

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  155 bits (395), Expect = 1e-45
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
           N+    A   K L N A++ K + +A   Y +AIEL+  N  +Y N+A  + + +++   
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 68  IQDASKAIEIDP-------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           +Q   KA+E+            K   R G A+        A++ F +      + P+  +
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120

Query: 121 KVKECEK 127
           KVKE EK
Sbjct: 121 KVKELEK 127

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  145 bits (367), Expect = 6e-42
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
           +S+ E+ K   N  F+   Y +A+  Y Q I    QN V Y+N+A A  KL EY  AIQ 
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
             + +           R    Y  +   + A+   Q         P+   +
Sbjct: 61  CQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDR 110

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  143 bits (362), Expect = 4e-40
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAI----------------ELNSQNAVYYANR 54
           V  A ++K   NE F+  + ++AI  Y +A+                +  +       N 
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94

Query: 55  AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           A  + K ++Y  AI  ASK ++ID    K  Y+ G A +  G  +EA ++  +   L+PN
Sbjct: 95  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154

Query: 115 DPDAAQKVKECEKAVKKLKFEEA 137
           + D     + C   +K+ + ++ 
Sbjct: 155 NLDIRNSYELCVNKLKEARKKDK 177

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  141 bits (358), Expect = 6e-40
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAI------------------ELNSQ 46
             E+  +   E L+   NE F  K Y +AID Y  A+                  EL+ +
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           N   YAN +  +  + +   A + +S+ ++ +    K  +RR  A +A  K  EA +D +
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
            + +  P       +  +     +  K  +
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKAD 151

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  140 bits (356), Expect = 2e-37
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 13/139 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+   L  +   A + + A+  +  A++ +  N + Y  RA     + +  +A+ D +K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK------------ 121
            I +   +     +RG   L  GK  EA  DF++V K +P++ +  +             
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 122 -VKECEKAVKKLKFEEAIA 139
              +   A     +  AI 
Sbjct: 123 LRSQALDAFDGADYTAAIT 141

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  132 bits (333), Expect = 3e-34
 Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----YANRAFAHTKLEEYGS 66
           V +  +L   A E  R  +Y+ A   Y   ++     A Y            +K E+   
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           AI+  S+ ++++P        R  AYL    + EA++D++  ++ + ND    + +++ +
Sbjct: 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350

Query: 127 KAVKKLK 133
           + +K+ +
Sbjct: 351 RLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  119 bits (301), Expect = 7e-30
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            + L++ A +AF    Y+ AI    + +E+   +A     RA    K  E   AI D   
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----------AQKVK 123
           A ++     + +Y+    Y  +G  + +L + ++  KL  +               + ++
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239

Query: 124 ECEKAVKKLKFEEAIA 139
             E+ ++  ++ +A +
Sbjct: 240 SAEELIRDGRYTDATS 255

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 20/140 (14%)

Query: 18  KALANEA---FRAKKYSQAIDLYSQAIELNSQNAVYYANR---------------AFAHT 59
            A         +  K  +A D + + ++ N                         A    
Sbjct: 72  AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131

Query: 60  KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
              +Y +AI    K +E+     +    R   ++  G+ ++A+ D +   KL  ++ +A 
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191

Query: 120 QKVKECEKAVKKLKFEEAIA 139
            K+      +     E +++
Sbjct: 192 YKISTLYYQLG--DHELSLS 209

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 30/134 (22%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANR------------AFAHTKLEEYGSAIQDASKAI 75
             +  ++    + ++L+  +   +A+             A    +   Y  A       +
Sbjct: 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 261

Query: 76  EIDPRYP----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKEC 125
           + +P       +   R    +    K  EA++   +V ++ P++ +A      A  ++E 
Sbjct: 262 KTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE- 320

Query: 126 EKAVKKLKFEEAIA 139
                   ++EAI 
Sbjct: 321 -------MYDEAIQ 327

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 20/72 (27%), Positives = 29/72 (40%)

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           +   +           +   A+     A++ DP     YYRR   +LAMGK K AL D  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 107 QVKKLSPNDPDA 118
           +V  L  +   A
Sbjct: 62  KVIALKMDFTAA 73

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.5 bits (202), Expect = 5e-17
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +K  +AI + S+ +++   N     +RA A+   E Y  AIQD   A E +    +    
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345

Query: 88  RGAAYLAMGKFKE 100
              A   + + ++
Sbjct: 346 LEKAQRLLKQSQK 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  142 bits (360), Expect = 3e-37
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 13/139 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+   L  +   A + + A+  +  A++ +  N + Y  RA     + +  +A+ D +K
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK------------ 121
            I++   +     +RG   L  GK  EA  DF++V K +P++ +  +             
Sbjct: 86  VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145

Query: 122 -VKECEKAVKKLKFEEAIA 139
              +   A     +  AIA
Sbjct: 146 LRSQALNAFGSGDYTAAIA 164

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  129 bits (326), Expect = 1e-32
 Identities = 27/140 (19%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----YANRAFAHTKLEEYGS 66
           V +  +L   A E  R  +Y+ A   Y   ++     A Y            +K E+   
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           AI+  S+ ++++P        R  AYL    + EA++D++  ++ + ND    + +++ +
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373

Query: 127 KAVKKLK---FEEAIAVPES 143
           + +K+ +   + + + V  +
Sbjct: 374 RLLKQSQKRDYYKILGVKRN 393

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  121 bits (306), Expect = 5e-30
 Identities = 25/147 (17%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
             +++       + L++ A  AF +  Y+ AI    + +E+   +A     RA    K  
Sbjct: 132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA---- 118
           E   AI D   A ++     + +Y+    Y  +G  + +L + ++  KL  +        
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251

Query: 119 ------AQKVKECEKAVKKLKFEEAIA 139
                  + ++  E+ ++  ++ +A +
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATS 278

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
            R++E         + +K  +AI + S+ +++   N     +RA A+   E Y  AIQD 
Sbjct: 295 VRSKERICHCF--SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---------------P 116
             A E +    +       A   + + ++         K +                  P
Sbjct: 353 ETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412

Query: 117 DAAQKVKECEKAVKKLK-FEEAIAV 140
           D  Q  +E +KA KK      A  V
Sbjct: 413 DNFQNEEEKKKAEKKFIDIAAAKEV 437

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 91.3 bits (227), Expect = 9e-20
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVY---------------YANRAFAHTKLEEY 64
             +   +  K  +A D + + ++ N                       ++A       +Y
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
            +AI    K +E+     +    R   ++  G+ ++A+ D +   KL  ++ +A  K+  
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219

Query: 125 CEKAVKKLKFEEAIA 139
               +     E +++
Sbjct: 220 LYYQLG--DHELSLS 232

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.8 bits (218), Expect = 1e-18
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 30  YSQAIDLYSQ-AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
           +S  +DL ++     +  +   +           +   A+     A++ DP     YYRR
Sbjct: 7   HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
              +LAMGK K AL D  +V +L  +   A         K  + ++A     F++ + 
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED--DFKKVLK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 11/69 (15%)

Query: 50  YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
           ++ +          Y  ++ D  K           +   G   LA G+  +AL  F    
Sbjct: 5   HHHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAV 53

Query: 110 KLSPNDPDA 118
              P++  A
Sbjct: 54  DGDPDNYIA 62

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  138 bits (350), Expect = 7e-37
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAI---------------ELNSQNAVYYANRA 55
           + ++  +K      F+  KY QA+  Y + +               +  +     + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203

Query: 56  FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
             H KL+ + +AI+  +KA+E+D    KG  RRG A+LA+  F+ A  DFQ+V +L PN+
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

Query: 116 PDAAQKVKECEKAVKKLKFEEA 137
             A  ++  C++ +++    E 
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREK 285

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  136 bits (345), Expect = 8e-37
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AEE +    E F    +  A+  Y++ I+   ++A  Y+NRA A  KL  +  AI D +K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AIE DP + + Y R+  A +A+ ++  AL+     +       + +       + + +L 
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS-----SAREIDQLY 253

Query: 134 FEEA 137
           ++ +
Sbjct: 254 YKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  122 bits (308), Expect = 1e-31
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A++ KA  N+ ++A+++ +AI+ Y++A EL+  +  Y  NRA A  +  EY +AI   + 
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLND 63

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEK 127
           A+E        Y     ++  +G     L D ++  +            D   K++  EK
Sbjct: 64  AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123

Query: 128 AVKKLKFEEAI 138
            +K  K E   
Sbjct: 124 ELK--KAEAEA 132

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  106 bits (266), Expect = 6e-26
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +   + +        +N + A         +    ++ +A++  ++ I+  P   +GY  
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
           R AA   +  F EA+ D  +  +  PN   A          VKE   A++    + A  
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE--TLDAART 235

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 97.2 bits (243), Expect = 7e-23
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 15/120 (12%)

Query: 26  RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
           R       +    + IE   ++   +   A   TKL      ++ A     ++P   +  
Sbjct: 84  RIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEA 142

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
              G  Y     +  A+K + ++ K +P D         A          K + F EAIA
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA--------KLMSFPEAIA 194

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 83.4 bits (207), Expect = 4e-18
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             + +AI   ++AIE +      Y  +A A   ++EY SA++    A   D     G   
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 88  RGAAYLAMGKFK 99
           R    L     +
Sbjct: 247 REIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.4 bits (189), Expect = 8e-16
 Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 10/100 (10%)

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
            A           K  ++  AI+  +KA E+          R AA    G+++ A+    
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLN 62

Query: 107 QVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
              +                 ++      +     ++ I 
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLG--DLKKTIE 100

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  139 bits (352), Expect = 8e-36
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A  LK   N+ FR KKY  AI  Y+ A+EL  ++ V+Y+N +  +  + +    ++ ++K
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK-KLSPNDPDAAQKVKECEKAVKKL 132
           A+E+ P Y K   RR +A   +GKF +A+ D   +      ND      ++         
Sbjct: 65  ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMS 124

Query: 133 KFEEAIA 139
           K +E   
Sbjct: 125 KLKEKFG 131

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  119 bits (300), Expect = 6e-29
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A  L+      F       A +   +AIEL  +   Y    A       +         K
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMADRNDSTEYYNYFDK 295

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A+++D      YY RG     +  + +A KDF + K+L P +          A +  + +
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFD 355

Query: 127 KAVKKLKFEEAI 138
                  F EA 
Sbjct: 356 DCET--LFSEAK 365

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  114 bits (286), Expect = 4e-27
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 13/134 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK---------LEEY 64
            E     A        + +A+  Y  AIEL ++    Y   A    K         +E +
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
             A     KA ++DPR  +         L      EA+  F++   L+    +  Q +  
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491

Query: 125 CEKAVKKLKFEEAI 138
            E A    K ++ I
Sbjct: 492 AEAA----KVQQRI 501

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  112 bits (282), Expect = 1e-26
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 7/119 (5%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + Y QA   + +A EL+ +N   Y   A    +  ++       S+A    P  P+    
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
                     F +ALK +    +L                K     +      F EA  
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  108 bits (271), Expect = 3e-25
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
              ++  + + +A++L+S N+  Y +R   +  L+ Y  A +D  KA E+DP     Y +
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIA 139
                    KF +    F + K+  P  P+          A     K  F++A+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVP-----NFFAEILTDKNDFDKALK 393

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  100 bits (250), Expect = 1e-22
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA  A+R  K+     L+S+A     +        A   T   ++  A++    AIE++ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 80  RYPKGYYRRGAAYL---------AMGKFKEALKDFQQVKKLSPNDPDA-------AQKVK 123
           +    Y                  +  F EA    ++  KL P    A         + +
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463

Query: 124 ECEKAVKKLKFEEAIA 139
           + ++A+    FEE+  
Sbjct: 464 DIDEAIT--LFEESAD 477

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 94.8 bits (236), Expect = 8e-21
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + + + +D  ++  +L  + A+   +         +   A +D  KAIE+ PR    Y  
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIY 275

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
                       E    F +  KL  N+   
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           + A+   ++     + ++Y  AI+  + A+E+    P  Y    A Y+++G  K+ ++  
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62

Query: 106 QQVKKLSPNDPDA 118
            +  +L P+    
Sbjct: 63  TKALELKPDYSKV 75

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 18/150 (12%), Positives = 39/150 (26%), Gaps = 32/150 (21%)

Query: 18  KALANEAFRAKKYSQAIDLYSQA---IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74
           +A ANE     K++ A+   S      + N  +      R      + +      D   A
Sbjct: 79  RASANEG--LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136

Query: 75  IEIDPRYPKGYYR-------------RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
                       +               A++  + K +    ++ +  +      +    
Sbjct: 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196

Query: 122 ------------VKECEKAVKKLKFEEAIA 139
                        +   KA +   FEE + 
Sbjct: 197 LYKRSPESYDKADESFTKAAR--LFEEQLD 224

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 16/154 (10%), Positives = 35/154 (22%), Gaps = 33/154 (21%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-------------AHTK 60
            E +           K  +       A    ++ +   A                 +   
Sbjct: 110 IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169

Query: 61  LEEYGSAIQDASKAIEIDPRYPKG-----------YYRRGAAYL-AMGKFKEALKDFQQV 108
           + +      +  ++ E D     G           Y +   ++  A   F+E L    + 
Sbjct: 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229

Query: 109 KKLSPNDPDAAQKVKECEKAVKKL---KFEEAIA 139
           +KL      +          + K        A  
Sbjct: 230 EKLKEKLAIS-----LEHTGIFKFLKNDPLGAHE 258

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  127 bits (320), Expect = 2e-31
 Identities = 34/133 (25%), Positives = 61/133 (45%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS 66
            +   + A +LK   N  F AK +++AI  Y  AIEL+    V+Y+N +  +    +   
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK 77

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
            I+  +KA+EI P + K   RR +A  ++G F +A+ D   +      D  + + + E  
Sbjct: 78  VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERN 137

Query: 127 KAVKKLKFEEAIA 139
              + +K      
Sbjct: 138 LNKQAMKVLNENL 150

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  109 bits (273), Expect = 2e-25
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
                  LA      +   +    + +A++LN +    Y +R   +  L++Y +A +D  
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--- 129
           KA  ++P     Y +        GKF E+   F + K   P  P+          A    
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV-----PTFFAEILT 389

Query: 130 KKLKFEEAIA 139
            +  F+ AI 
Sbjct: 390 DRGDFDTAIK 399

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  105 bits (265), Expect = 2e-24
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + Y  A + + +A  LN +N   Y   A    K  ++  +    ++     P  P+    
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA--------------AQKVKECEKAVKKLK 133
                   G F  A+K +   K+L                     A++  +    + + K
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443

Query: 134 FEEAIA 139
           F  AI 
Sbjct: 444 FNAAIK 449

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  102 bits (257), Expect = 2e-23
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 20/141 (14%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK------------- 60
            E     A        +  AI  Y  A  L       +        K             
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437

Query: 61  ---LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
               E++ +AI+  +KA E+DPR  +         L M K  EA++ F+    L+    +
Sbjct: 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497

Query: 118 AAQKVKECEKAVKKLKFEEAI 138
             Q     E A    K ++ +
Sbjct: 498 KLQATTFAEAA----KIQKRL 514

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYA----NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
            +       +Q   L+      YA    NR       + +  AI+    AIE+DP  P  
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           Y    A Y++ G  ++ ++   +  ++ P+   A
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 20/131 (15%), Positives = 31/131 (23%), Gaps = 13/131 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L A          Y   +   +    L    A+        H        A     +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----AQKVKECEKAV 129
           +I + P     Y             +E  K FQ+   L+P  P       Q         
Sbjct: 269 SINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ-------MY 320

Query: 130 KKL-KFEEAIA 139
             L  ++ A  
Sbjct: 321 FILQDYKNAKE 331

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 25/143 (17%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA   ++  K++++   +++               A   T   ++ +AI+    A  ++ 
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 80  RYPKGYYRRGAA----------------YLAMGKFKEALKDFQQVKKLSPNDPDA----A 119
              K +   G                   L   KF  A+K   +  +L P    A    A
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469

Query: 120 Q---KVKECEKAVKKLKFEEAIA 139
           Q   ++++ ++A++   FE++  
Sbjct: 470 QLKLQMEKIDEAIE--LFEDSAI 490

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 11/131 (8%)

Query: 18  KALANEAFRAK-KYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74
             L   +      Y  A  L S A++   ++ +  Y           + Y S +   +  
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235

Query: 75  IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKA 128
             +           G  +       +A    Q+   L P               +  ++ 
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295

Query: 129 VKKLKFEEAIA 139
            K   F++A+ 
Sbjct: 296 FK--FFQKAVD 304

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 2/105 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
                +        +K++ AI L ++A EL+ ++       A    ++E+   AI+    
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           +  +     +        +    K ++ L+    +          
Sbjct: 488 SAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRYPKGYY 86
           +K  +AI+L+  +  L            FA   K+++           +  DP       
Sbjct: 476 EKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK----------RLRADPIISAKME 525

Query: 87  RRGAAYLAMGK 97
              A Y A G 
Sbjct: 526 LTLARYRAKGM 536

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score =  114 bits (286), Expect = 4e-30
 Identities = 23/123 (18%), Positives = 44/123 (35%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+L AL    ++A K+  A  ++     L+  +A Y+         L  Y  A+Q  S 
Sbjct: 18  LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
              +D   P+  +     +L +G    A   F   + L+   P            ++ + 
Sbjct: 78  GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT 137

Query: 134 FEE 136
             +
Sbjct: 138 ARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 76.3 bits (188), Expect = 9e-17
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96
            +    L+           F   +  ++  A +       +D    + +   GA   ++G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 97  KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
            +++AL+ +     +  N+P       EC   +     + A +
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG--DLDGAES 107

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  113 bits (283), Expect = 1e-27
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 17/154 (11%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---------- 50
             +  T    +  A+  K   N  F+ +K  +A+  Y  AI     + ++          
Sbjct: 166 ARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMA 225

Query: 51  -------YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
                  + N A    KL+ Y  AI   +  +  + + PK  +RRG A   +G+   A  
Sbjct: 226 LAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285

Query: 104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137
           DF++ +K +P+D    ++++   +  K L  ++ 
Sbjct: 286 DFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  110 bits (277), Expect = 2e-26
 Identities = 21/105 (20%), Positives = 46/105 (43%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L  L++  F+ ++  ++    + AI+ N   A  Y+N    + +  +   AI+    
Sbjct: 33  TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+ + P +  GY    AA +A G  + A++ +    + +P+    
Sbjct: 93  ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  103 bits (258), Expect = 6e-24
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE    L N      +  +AI+ Y  A+ L       Y N A A     +   A+Q    
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A++ +P         G    A+G+ +EA   + +  +  PN   A            E  
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186

Query: 127 KAVKKLKFEEAIA 139
            A+    FE+A+ 
Sbjct: 187 LAIH--HFEKAVT 197

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  102 bits (256), Expect = 1e-23
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 9/127 (7%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA+  ++A  +  A     Q       N       +  H +      +   ++ AI+ +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKL 132
              + Y   G  Y   G+ +EA++ ++   +L P+  D             + E AV+  
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ-- 122

Query: 133 KFEEAIA 139
            +  A+ 
Sbjct: 123 AYVSALQ 129

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  101 bits (254), Expect = 2e-23
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA     A     A+  Y  A++ N       ++       L     A     KAIE  P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--KKL-KFEE 136
            +   +   G  + A G+   A+  F++   L PN  DA             K+   F+ 
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY-----INLGNVLKEARIFDR 221

Query: 137 AIA 139
           A+A
Sbjct: 222 AVA 224

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =   99 bits (250), Expect = 7e-23
 Identities = 22/91 (24%), Positives = 41/91 (45%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
              ++A D Y+ A+ L   +A    N A    +      A++   KA+E+ P +   +  
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
             +     GK +EAL  +++  ++SP   DA
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 99.2 bits (248), Expect = 1e-22
 Identities = 23/91 (25%), Positives = 34/91 (37%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +  +A   Y +AIE     AV ++N         E   AI    KA+ +DP +   Y  
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G        F  A+  + +   LSPN    
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 98.8 bits (247), Expect = 2e-22
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + + +A+  Y +A+ L+  +AV + N A  + +      AI    +AIE+ P +P  Y  
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
              A    G   EA   +    +L P   D+       ++ +           EEA+ 
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG--------NIEEAVR 326

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 98.0 bits (245), Expect = 3e-22
 Identities = 20/91 (21%), Positives = 34/91 (37%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
                AID Y +AIEL       Y N A A  +      A    + A+ + P +      
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
                   G  +EA++ +++  ++ P    A
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 97.6 bits (244), Expect = 4e-22
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +   AI  + +A+ L+      Y N      +   +  A+    +A+ + P +   +  
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--KKL-KFEEAIA 139
               Y   G    A+  +++  +L P+ PDA      C  A   K+     EA  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAY-----CNLANALKEKGSVAEAED 292

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 4e-15
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LAN         +A+ LY +A+E+  + A  ++N A    +  +   A+    +AI I P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 80  RYPKGYYRRGAAYLAMG 96
            +   Y   G     M 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 72.2 bits (178), Expect = 9e-14
 Identities = 8/96 (8%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 51  YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110
               A    +  ++ +A +   +    +P          + +    +   +        K
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 111 LSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
            +P   +A        ++  + ++A++   +  A+ 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIE--HYRHALR 95

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 9/63 (14%)

Query: 84  GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEE 136
           G           G F+ A +   Q+ +  P++            + +  +++        
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH--FSTL 58

Query: 137 AIA 139
           AI 
Sbjct: 59  AIK 61

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE 63
           LA+   +  K  +A+  Y +AI ++   A  Y+N      ++++
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score =  103 bits (259), Expect = 3e-26
 Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 1/117 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            +++ + A + +   +  +A   +      +  N  Y    A  +   E++  A    + 
Sbjct: 36  MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
           A  +        +  G   L +    +A + F+ V + S ++     K +    A++
Sbjct: 96  AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK-LKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 68.3 bits (167), Expect = 6e-14
 Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 5/126 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
             E ++++     A               +         + A+          A      
Sbjct: 5   ITENESISTAVIDAINSGAT---LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
               D           A Y    +F++A   +     L  ND        +C+  +K   
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK--A 119

Query: 134 FEEAIA 139
             +A  
Sbjct: 120 PLKAKE 125

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  106 bits (266), Expect = 4e-26
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
                      Y +A + +++AIE N ++A+ Y N A   + + E   A+    KA+E+D
Sbjct: 28  QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKL 132
                 YY  G  Y+    +KEA   F++  +    + D            E        
Sbjct: 88  SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE-------- 139

Query: 133 KFEEAIA 139
           + + A+ 
Sbjct: 140 QPKLALP 146

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 99.1 bits (248), Expect = 1e-23
 Identities = 23/91 (25%), Positives = 39/91 (42%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +  +A+  Y +A+EL+S  A  Y      +   E Y  A     KA+         +Y 
Sbjct: 71  NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G   + + + K AL   Q+  +L+ ND +A
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 98.7 bits (247), Expect = 1e-23
 Identities = 21/91 (23%), Positives = 39/91 (42%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + Y +A D++ +A+    +N   +        KLE+   A+    +A+E++    +  ++
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G      G   EAL  F  V +  P   DA
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 16/91 (17%), Positives = 32/91 (35%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           ++   A+    +A+ELN  +                   A+   +   E DP +   +Y 
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G  Y      ++AL+   +   + P+   A
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 90.7 bits (226), Expect = 8e-21
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 17/118 (14%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             +  +  L  +   + S        R       E+   A +  +KAIE +      Y  
Sbjct: 6   HHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEK---AAEAFTKAIEENKEDAIPYIN 62

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
                 ++ + + AL  + +  +L  +   A         VKE         ++EA  
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE--------MYKEAKD 112

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 11/70 (15%), Positives = 25/70 (35%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
               +A+  ++   E +  +A  + N    +   E    A++   KAI+I P +    + 
Sbjct: 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 88  RGAAYLAMGK 97
           +         
Sbjct: 233 KKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYL----AMGKFKEALKDFQQVKKLSPNDPDA-- 118
           GS+      +  + PR        G   +      G +++A + F +  + +  D     
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 119 -----AQKVKECEKAVKKLKFEEAIA 139
                   V E E+A+    +++A+ 
Sbjct: 62  NFANLLSSVNELERALA--FYDKALE 85

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 3/37 (8%), Positives = 15/37 (40%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           +   +A+++  +AI++   + +    +         +
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score =  102 bits (256), Expect = 5e-26
 Identities = 21/126 (16%), Positives = 49/126 (38%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+L +LA   +++  Y  A  ++     L+  ++ ++         + +Y  AI   S 
Sbjct: 21  LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
              +D   P+  +      L  G+  EA       ++L  N P+  +        ++ +K
Sbjct: 81  GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140

Query: 134 FEEAIA 139
            ++ + 
Sbjct: 141 LKKEMK 146

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 75.3 bits (185), Expect = 2e-16
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 5/116 (4%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
                    +   E++S       + AF   +   Y  A         +D    + +   
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIA 139
           GA   AMG++  A+  +     +   +P       EC     +L         A  
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  106 bits (267), Expect = 5e-26
 Identities = 23/91 (25%), Positives = 35/91 (38%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            + S AI  Y  A++ ++     Y            +  AIQ   K I      PK +Y 
Sbjct: 88  GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE 147

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G AY    ++ +A   F +V +L PN    
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  105 bits (263), Expect = 2e-25
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS- 72
            +     A+  F+   Y++AI+++++       +   Y  RA  + +L +Y  A +D   
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 73  --KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVK 123
               +         +   G   +  G+   A++ +Q          D             
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122

Query: 124 ECEKAVKKLKFEEAIA 139
               A++    E+ I 
Sbjct: 123 NFPLAIQ--YMEKQIR 136

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  100 bits (251), Expect = 8e-24
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 28  KKYSQAI---DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
            KY  A    + Y   +      +  +        K  +   AIQ    A++ D      
Sbjct: 51  AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           Y + G+ +   G F  A++  ++  + +  DP  
Sbjct: 111 YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 97.3 bits (243), Expect = 8e-23
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            +    + +  +    +  AI    + I   + +   +     A+   +EY  A     K
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

Query: 74  AIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDA 118
            +E+ P    GY  R  A  A     K   A   ++++ ++       
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 91.6 bits (228), Expect = 9e-21
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 11/110 (10%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIE 76
           L    +  K+Y +A   + + +EL     + Y  RA A+       + G A     K IE
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 77  IDP--------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           +             +        Y       +A   ++ +  L P +  A
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           N       A    K   Y  AI+  +K        P  Y RR   Y  + K+  A KD +
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 107 QVKKLSPNDPDAA----------QKVKECEKAVKKLKFEEAIA 139
                       +           K  +   A++  +++ A+ 
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ--QYQAAVD 102

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 8/73 (10%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVY--------YANRAFAHTKLEEYGSAIQDASKAIEIDP 79
            K   A   Y + IE+ +                 A+ +T   +   A       + +DP
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252

Query: 80  RYPKGYYRRGAAY 92
              K         
Sbjct: 253 TNKKAIDGLKMKL 265

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  105 bits (264), Expect = 6e-25
 Identities = 28/148 (18%), Positives = 67/148 (45%), Gaps = 16/148 (10%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAI----------------ELNS 45
            +++  +  +  +E+LK + N  F+++ +  AI  Y++ +                +L  
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
                  N      K+ ++  A+    +A+EIDP   K  YRR   +  + ++ +AL D 
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330

Query: 106 QQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           ++ ++++P D     ++ + ++ +K  K
Sbjct: 331 KKAQEIAPEDKAIQAELLKVKQKIKAQK 358

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  106 bits (266), Expect = 1e-24
 Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  +  V  A+       LE     +    +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A  + P              A+   +  L    Q   L+P    A          ++   
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463

Query: 127 KAVKKLKFEEAIA 139
             +   + + A+A
Sbjct: 464 AQLS--RPDPALA 474

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  103 bits (258), Expect = 1e-23
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 3/108 (2%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +   + + +  QA  L  +  V  A+       LE     +    +A  + P+       
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV---KECEKAVKKL 132
            G    A+      L           ND   A      +    AVKKL
Sbjct: 452 NGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDAVKKL 499

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  102 bits (256), Expect = 2e-23
 Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A  + P         G    A+   +  L    Q   L+P    A        Q ++  +
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 429

Query: 127 KAVKKLKFEEAIA 139
           + +      +A  
Sbjct: 430 RLLP--VLCQAHG 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  102 bits (255), Expect = 3e-23
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 72  VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 131

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P              A+   +  L    Q   L+P    A       ++A++ + 
Sbjct: 132 AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETV- 190

Query: 134 FEEAIA 139
            +  + 
Sbjct: 191 -QRLLP 195

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  102 bits (255), Expect = 3e-23
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +     + +  QA  L  +  V  A+       LE     +    +
Sbjct: 140 VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 199

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P+        G    A+   +  L    Q   L+P    A       ++A++   
Sbjct: 200 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE--T 257

Query: 134 FEEAIA 139
            +  + 
Sbjct: 258 VQRLLP 263

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  101 bits (254), Expect = 4e-23
 Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 4/127 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  +  V  A+       LE   + +    +
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL- 132
           A  + P         G    A+   +  L    Q   L+P    A   +       + L 
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA---IASNGGGKQALE 222

Query: 133 KFEEAIA 139
             +  + 
Sbjct: 223 TVQRLLP 229

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  101 bits (254), Expect = 5e-23
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P+             A+   +  L    Q   L+P    A       ++A++ + 
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV- 326

Query: 134 FEEAIA 139
            +  + 
Sbjct: 327 -QRLLP 331

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  100 bits (252), Expect = 6e-23
 Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + + +      +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A  + P+             A+   +  L    Q   L+P    A        Q ++  +
Sbjct: 336 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ 395

Query: 127 KAVKKLKFEEAIA 139
           + +      +A  
Sbjct: 396 RLLP--VLCQAHG 406

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  100 bits (252), Expect = 7e-23
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 174 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P+        G    A+   +  L    Q   L+P    A       ++A++   
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE--T 291

Query: 134 FEEAIA 139
            +  + 
Sbjct: 292 VQRLLP 297

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +   + + +  QA  L  Q  V  A+ +     LE     +    +A  + P+       
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 315

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIAV 140
            G    A+   +  L    Q   L+P    A        Q ++  ++ +      +A  +
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP--VLCQAHGL 373

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 94.8 bits (236), Expect = 7e-21
 Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 13/128 (10%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
             A EA     +  A  L    + L  +  V  A+       LE     +    +A  + 
Sbjct: 47  VTAVEA--VHAWRNA--LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKK 131
           P+             A+   +  L    Q   L+P    A        Q ++  +  +  
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLP- 161

Query: 132 LKFEEAIA 139
               +A  
Sbjct: 162 -VLCQAHG 168

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 6/132 (4%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR--AFAHTKLEEYGSAI 68
           +         +         + A +L    ++L++   +  A R    A   +  + +A+
Sbjct: 1   LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60

Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
                 + + P              A+   +  L    Q   L+P    A       ++A
Sbjct: 61  TG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 118

Query: 129 VKKLKFEEAIAV 140
           ++    +  + V
Sbjct: 119 LE--TVQRLLPV 128

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE   + +     
Sbjct: 412 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A+               A   +G  + AL   ++
Sbjct: 472 ALAALTND------HLVALACLGG-RPALDAVKK 498

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A Length = 342

 Score =  104 bits (259), Expect = 1e-24
 Identities = 45/258 (17%), Positives = 85/258 (32%), Gaps = 26/258 (10%)

Query: 272 LQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN---- 327
           L   ++   +  ++       K      DVHGQ+  LL + +   +   +  + F     
Sbjct: 50  LPETKLSSEIKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHM 109

Query: 328 ---GDFVDRGSFSVEVILTLFAFKCMCPSA---IYLSRGNHESKSM-------NKIYGFE 374
              GD  DRG    EV+  ++        A   ++L  GNHE   +       ++ Y   
Sbjct: 110 VMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIA 169

Query: 375 GEVRSKLSETFVELFAEVFCCL---PLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC 431
             + ++          E+   L        +N  ++ +HGG+ S    +   +   +   
Sbjct: 170 TTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLY-MHGGISSEWISRELTLDKANALY 228

Query: 432 EPPEEGLMCELLWSDPQPLPGRGPSK---RGVGLS-FGADVTKRFLQDNSLDLVVRSHEV 487
               +     L   D       G      RG     F        LQ  +++ +V  H  
Sbjct: 229 RANVDASKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTS 288

Query: 488 KDEGYEIEHDGKLITVFS 505
           ++    +    K+I V S
Sbjct: 289 QERVLGL-FHNKVIAVDS 305

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  104 bits (261), Expect = 3e-24
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 21  ANEAFRAKKYSQAIDLYSQAI------------ELNSQNAVY---YANRAFAHTKLEEYG 65
               F+  KY QA+  Y + +            E  +  +     + N A  + KL EY 
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334

Query: 66  SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
            A++   KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  A  ++  C
Sbjct: 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394

Query: 126 EKAVKKLKFEEA 137
           +K  K+    + 
Sbjct: 395 QKKAKEHNERDR 406

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 99.4 bits (248), Expect = 4e-24
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
               A   K +  A+D +S   + +S+      N    +T L+    A +  +++I  D 
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQV-KKLSPNDPDA 118
                Y++RG  Y    K+  A+KD ++   +L  N    
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 88.2 bits (219), Expect = 4e-20
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 18/133 (13%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI-EIDPRYPKGYY 86
           K  ++A   ++++I  +   AV Y  R   + + E+Y  AI+D  +A+ ++       Y 
Sbjct: 51  KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110

Query: 87  R---------------RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
                               Y    ++K+A +       +      +  K+ +  + V K
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS--KIDKAMECVWK 168

Query: 132 LKFEEAIAVPESE 144
            K  E + +P   
Sbjct: 169 QKLYEPVVIPVGR 181

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 43  LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102
           ++   A+   N        +++  A+   S    +   + +  +  G  Y  +    EA 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAE 57

Query: 103 KDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
           K F +      +   A         + ++ + A+K    +EA+ 
Sbjct: 58  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK--DLKEALI 99

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 28/125 (22%)

Query: 25  FRAKKYSQAIDLYSQAIELNSQN----------------AVYYANRAFAHTKLEEYGSAI 68
           ++ +KY  AI    +A+     N                     N AF + K EE+  A 
Sbjct: 82  YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141

Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
           +  + A  +                      +A++   + K   P      +  +  E+ 
Sbjct: 142 EQLALATSMKSEPRHSKID------------KAMECVWKQKLYEPVVIPVGRLFRPNERQ 189

Query: 129 VKKLK 133
           V +L 
Sbjct: 190 VAQLA 194

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  100 bits (252), Expect = 6e-24
 Identities = 24/106 (22%), Positives = 40/106 (37%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           RA+ L             + A + +SQA+ +       +       T+   + +A +   
Sbjct: 42  RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
             +E+DP Y   +  RG A    G+ K A  D     +  PNDP  
Sbjct: 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE----LNSQNAVYYANRAFAHTKLEEYG 65
           S +   + + LA       +    +    Q +      + + A     R   +  L    
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 66  SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            A  D S+A+ I P  P+ +   G      G F  A + F  V +L P    A
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 24  AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG---SAIQDASKAIEIDPR 80
           A +     QA ++  Q  E + +    +    F    + E         DA+    +   
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213

Query: 81  YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL-KFEEAIA 139
             +  +  G  YL++G    A   F+     + ++       +     +  L + ++ +A
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 82.7 bits (205), Expect = 8e-18
 Identities = 16/112 (14%), Positives = 29/112 (25%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             +  A + +   +EL+      + NR  A         A  D     + DP  P     
Sbjct: 91  GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW 150

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
              A   + + +      Q  +K                   ++   E   A
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA 202

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 8/79 (10%), Positives = 21/79 (26%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
              +     +    L    +         +  L +  SA      A+  +      +   
Sbjct: 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255

Query: 89  GAAYLAMGKFKEALKDFQQ 107
                 +G+ ++ L +  Q
Sbjct: 256 LLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 8/54 (14%), Positives = 17/54 (31%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           L            A  L+  A+  N  N V +       + L +    + ++ +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 97.9 bits (244), Expect = 1e-23
 Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 26/149 (17%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYA---------------NRAFA 57
            +E+    + A  A +  QA+  + Q I LN     +YY                  A A
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           + K   Y  A     + ++  P             +  G+ K+AL+ ++++ +L  ++  
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 118 A--------AQKVKECEKAVKKLKFEEAI 138
           A            ++ +K ++     + +
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLE--TDYKKL 150

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 94.4 bits (235), Expect = 2e-22
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 11/159 (6%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
               + +S   ++    LA    + + Y +A   Y + ++    N       A       
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDA--- 118
           +   A++   K ++++          G  Y     + K+ L+   +          A   
Sbjct: 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162

Query: 119 ----AQKVKECEKAVKKLKFEEAIAV-PESERHSVADSI 152
                      EKA      ++ I   P +E     D I
Sbjct: 163 DGLSKLFTTRYEKARN--SLQKVILRFPSTEAQKTLDKI 199

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 15/111 (13%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 45  SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR---------------- 88
            Q+      +  A  +  + G A+    + I ++    + YY                  
Sbjct: 1   GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
             AY     + +A   ++++ + +PN+ D  +   E +      + ++A+ 
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG--QEKDALR 109

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 8/56 (14%), Positives = 23/56 (41%)

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140
             ++ +A +  G+  +A+  F+Q   L+ +  +        + +    K    +A+
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  102 bits (256), Expect = 3e-23
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A+        K S+A   +S++  ++ Q    +   A +     E+  AI   + A  + 
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKK 131
                 Y   G  ++ +G    A +  Q    L   DP         A    + + A+  
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN- 496

Query: 132 LKFEEAIA 139
             F+ A+ 
Sbjct: 497 -HFQNALL 503

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 93.4 bits (232), Expect = 3e-20
 Identities = 17/105 (16%), Positives = 40/105 (38%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           ++ L   A+  F   ++   + + ++ +E++  N   Y     +  +  E       ++ 
Sbjct: 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            ++  P     +   G  YL + K  EA + F +   + P    A
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 91.4 bits (227), Expect = 1e-19
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL-------NSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           L   AF       AI+ +  A+ L           A  +AN   A+ KL+ Y +AI   +
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           + + +       +      YL       A+    +   +SPN+  A+  +K  
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 10/91 (10%), Positives = 36/91 (39%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            + ++   + +  ++ + + AV +      +  + +   A +  SK+  +DP++   +  
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
              ++   G+  +A+  +    +L       
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 5/126 (3%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
             A+      ++ QAI  Y+ A  L     + Y      H +L     A +    +  + 
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE----KAVKKL-K 133
              P      G         + A+  FQ    L        +           A +KL  
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531

Query: 134 FEEAIA 139
           ++ AI 
Sbjct: 532 YDAAID 537

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 83.0 bits (205), Expect = 7e-17
 Identities = 14/105 (13%), Positives = 30/105 (28%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L  L       +   +  + Y  +I    +++     +A        +   +   +K
Sbjct: 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            +EIDP     Y    A+    G+  +       +    P     
Sbjct: 331 ILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L +   + K Y  AID  +Q + L++ +A  +   A  +   +  G AI    +++ I P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 80  RYPKGYYRRGAAY 92
                      A 
Sbjct: 582 NEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 28  KKYSQAIDL-YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86
           +++   + L YS   + ++             T  E+     +D   +I    +      
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309

Query: 87  RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            +        +F + L    ++ ++ P + D 
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 27/144 (18%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ---------- 69
           LA        Y++A  L ++    N  +A  Y   AF   KL ++  A+           
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRK 181

Query: 70  -------DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA---- 118
                     +   I        Y RG  Y  +  F  A + +++   +     +A    
Sbjct: 182 DEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240

Query: 119 ----AQKVKECEKAVKKLKFEEAI 138
                    E    V KL +    
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYS 264

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 14/132 (10%), Positives = 37/132 (28%), Gaps = 13/132 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH--TKLEEYGSAIQ-D 70
           A               + +A + Y +A+ ++++    +      H  T  EE+   ++ +
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLN 259

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----------AQ 120
            S   + D  + +  Y       +        +D+           D             
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319

Query: 121 KVKECEKAVKKL 132
           +  +      K+
Sbjct: 320 RFIDVLAITTKI 331

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L  L       K    A  L  Q   +  + ++ Y  R   +T L  +  A +   +
Sbjct: 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLSNFDRAKECYKE 225

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           A+ +D +  + + +  + +L     +  L         S  D    +
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 23/182 (12%), Positives = 49/182 (26%), Gaps = 11/182 (6%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
                  N+S S+   L             +    L  +  +     +     R + H  
Sbjct: 35  SMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDA 94

Query: 61  LEE--YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           L +  Y  A     K ++I    P   +     Y   G +  A     +    + +    
Sbjct: 95  LMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACR 153

Query: 119 AQKVKECEKAVKKLKFEEAIAV-----PESERHSVADSIDYQSIGMSPSSSFVSTQAAIL 173
                   K      ++ A+ +     P  +    A+ +  Q  G+   +S    +  + 
Sbjct: 154 YLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210

Query: 174 AA 175
             
Sbjct: 211 TN 212

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 92.1 bits (230), Expect = 1e-22
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGY 85
             Y+++IDL+ +AI+L+ + + Y+  +  A   LE Y  A+   +  I +  D      +
Sbjct: 20  GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
             +  A   +   +   +  +   KL  + 
Sbjct: 80  AAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 78.3 bits (194), Expect = 9e-18
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 43  LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102
           +  QN   Y            Y  +I    KAI++DP   K +  +G A   + +++EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 103 KDFQQVKKLSPNDPDAA---------QKVKECEKAVKKLKFEEAIA 139
             +  V  +  ++ +           + ++  E   +    E    
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAE--IAEARAK 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 94.1 bits (235), Expect = 2e-22
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 14/118 (11%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +YSQA+ L  Q  + ++ +     +   A+ K        +   +++   P   K    
Sbjct: 22  GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
            G  Y+ + K+  A+    +V + +P + +       A             +F+EAI 
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG--------RFDEAID 131

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 18/91 (19%), Positives = 36/91 (39%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
               +  +L  +++     N          + ++++Y  A+    K  E +P      +R
Sbjct: 56  GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G A   +G+F EA+  F+    L PN+   
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 22/91 (24%), Positives = 35/91 (38%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +KY  A+ L  +  E N  N         A   L  +  AI     A+ + P   K +  
Sbjct: 90  QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
              +Y  MG+ +EAL  F++  +L       
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 78.3 bits (194), Expect = 6e-17
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 41  IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100
           +  +    VYY ++  +H K   Y  A+    +  + D          G AY+  G    
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 101 ALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
             +  ++    +P++              +        K++ A+ 
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQ--------KYDLAVP 97

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 96.2 bits (240), Expect = 5e-22
 Identities = 14/139 (10%), Positives = 36/139 (25%), Gaps = 13/139 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E          +    ++A   +    +   +    + +      + E+ G AI   + 
Sbjct: 21  HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL- 132
           A  +DP+    +     ++        AL   +      P          + +  +  L 
Sbjct: 81  ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140

Query: 133 ------------KFEEAIA 139
                       ++ E   
Sbjct: 141 VQSEDFFFAAPNEYRECRT 159

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 19/116 (16%), Positives = 46/116 (39%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
           ++  +         +++         +Y +   L   A+E+N  +A  +A+    +    
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            Y SA  +  +A+E+ P   + + + GA      + +EAL  + +   ++P     
Sbjct: 187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 16/91 (17%), Positives = 32/91 (35%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y  A     +A+EL   +A  +               A+   ++A++I+P Y +  Y 
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
              +Y  M ++  A K   +   +       
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 12/90 (13%), Positives = 18/90 (20%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
              Q    Y                   +  KL     A        +  P   + +   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           G       K   A+      + L P D   
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 12/92 (13%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +  +A+D Y++A+++N        N A +++ + +Y  A +   +AI +          
Sbjct: 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279

Query: 88  R------------GAAYLAMGKFKEALKDFQQ 107
                              M +       + Q
Sbjct: 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 90.1 bits (224), Expect = 6e-22
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 3/116 (2%)

Query: 31  SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90
               +     +   + N +        + + E++ +A+     A++ DP Y   +   G 
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 91  AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERH 146
                G    A + ++     + +  D  Q VKE +  +++L      A+     H
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGD-QQVVKELQVFLRRL--AREDALEHHHHH 114

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 90.9 bits (227), Expect = 6e-22
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y 
Sbjct: 15  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
            G AY   G + EA++ +Q+  +L P   +A      A   +          ++EAI 
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------DYDEAIE 124

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y 
Sbjct: 49  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPN 114
            G AY   G + EA++ +Q+  +L P 
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 67.4 bits (166), Expect = 9e-14
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 48  AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y  G AY   G + EA++ +Q+
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 108 VKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
             +L P   +A      A   +          ++EAI 
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQG--------DYDEAIE 90

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 99.0 bits (246), Expect = 9e-22
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQ 285

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P         G    A+   +  L    Q   L+P+   A       ++A++   
Sbjct: 286 AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALE--T 343

Query: 134 FEEAIA 139
            +  + 
Sbjct: 344 VQRLLP 349

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 95.9 bits (238), Expect = 8e-21
 Identities = 15/105 (14%), Positives = 29/105 (27%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQ 319

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A  + P              A+   +  L    Q   L+P+   A
Sbjct: 320 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 95.9 bits (238), Expect = 9e-21
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ 251

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P              A+   +  L    Q   L+P+   A       ++A++   
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE--T 309

Query: 134 FEEAIA 139
            +  + 
Sbjct: 310 VQRLLP 315

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 93.2 bits (231), Expect = 6e-20
 Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 2/127 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  +                A+   +  L    Q   L+P+   A       ++A++ + 
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV- 751

Query: 134 FEEAIAV 140
            +  + V
Sbjct: 752 -QRLLPV 757

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 90.9 bits (225), Expect = 3e-19
 Identities = 16/105 (15%), Positives = 30/105 (28%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A  + P         G    A+   +  L    Q   L+P+   A
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 89.3 bits (221), Expect = 1e-18
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 9/129 (6%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           S     +AL       +   + + +  QA  L     V  A+       LE     +   
Sbjct: 570 SNGGGKQAL-------ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +A  + P              A+   +  L    Q   L+P+   A       ++A++ 
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682

Query: 132 LKFEEAIAV 140
           +  +  + V
Sbjct: 683 V--QRLLPV 689

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 88.5 bits (219), Expect = 2e-18
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 2/127 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  +  V  A+       LE     +    +
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P         G    A+   +  L    Q   L+P    A       ++A++   
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE--T 784

Query: 134 FEEAIAV 140
            +  + V
Sbjct: 785 VQRLLPV 791

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 87.8 bits (217), Expect = 3e-18
 Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 4/127 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL- 132
           A  +                A+   +  L    Q   L+P    A   +   +   + L 
Sbjct: 591 AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA---IASHDGGKQALE 647

Query: 133 KFEEAIA 139
             +  + 
Sbjct: 648 TVQRLLP 654

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 87.4 bits (216), Expect = 4e-18
 Identities = 15/105 (14%), Positives = 28/105 (26%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 599 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A  + P         G    A+   +  L    Q   L+     A
Sbjct: 659 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 87.4 bits (216), Expect = 4e-18
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +            + + +  QA  L     V  A+       LE     +    +
Sbjct: 497 VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A  + P         G    A+   +  L    Q   L+     A        Q ++  +
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616

Query: 127 KAVKKLKFEEAIA 139
           + +      +A  
Sbjct: 617 RLL--PVLCQAHG 627

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 87.0 bits (215), Expect = 5e-18
 Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 8/122 (6%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
             A EA     ++    L    + L     V  A+       LE     +    +A  + 
Sbjct: 167 VTAMEAV----HASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 222

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL-KFEEA 137
           P              A+   +  L    Q   L P+   A   +       + L   +  
Sbjct: 223 PAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVA---IASNIGGKQALETVQRL 279

Query: 138 IA 139
           + 
Sbjct: 280 LP 281

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 86.6 bits (214), Expect = 6e-18
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  Q   L     V  A+       LE     +    +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P              A+   +  L    Q   L+P+   A       ++A++   
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE--T 546

Query: 134 FEEAIA 139
            +  + 
Sbjct: 547 VQRLLP 552

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 85.1 bits (210), Expect = 2e-17
 Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 4/128 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   Q + +  QA  L     V  A+       L      +    +
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQ 522

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL- 132
           A  + P         G    A+   +  L    Q   L+P+   A   +       + L 
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA---IASNGGGKQALE 579

Query: 133 KFEEAIAV 140
             +  + V
Sbjct: 580 TVQRLLPV 587

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 84.7 bits (209), Expect = 3e-17
 Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 1/105 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 362 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQ 420

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A  + P              A+   +  L    Q   L+P    A
Sbjct: 421 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 83.9 bits (207), Expect = 5e-17
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 3/126 (2%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 328 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 387

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P         G    A+   +  L    Q   L+P+   A       ++A++ + 
Sbjct: 388 AHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETV- 445

Query: 134 FEEAIA 139
            +  + 
Sbjct: 446 -QRLLP 450

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 81.2 bits (200), Expect = 3e-16
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
              + + +  QA  L     V  A+       LE     +    +   + P         
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140
                A+   ++ L    Q   L+P+   A       ++A+     +  + V
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALA--TVQRLLPV 519

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 76.2 bits (187), Expect = 1e-14
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 10/136 (7%)

Query: 13  RAEELK-----ALAN--EAFRA-KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           +A  L      A+A+     +A +   + + +  QA  L     V  A+       LE  
Sbjct: 692 QAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 751

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
              +    +A  + P              A+   +  L    Q   L+     A      
Sbjct: 752 QRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIG 811

Query: 125 CEKAVKKLKFEEAIAV 140
            ++A++    +  + V
Sbjct: 812 GKQALE--TVQRLLPV 825

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.3 bits (169), Expect = 2e-12
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 6/122 (4%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A A EA      + A +L    ++L++   V  A R         + S        + + 
Sbjct: 133 ARALEA----LLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT 188

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
           P              A+   +  L    Q   L+P    A       ++A++ +  +  +
Sbjct: 189 PAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETM--QRLL 246

Query: 139 AV 140
            V
Sbjct: 247 PV 248

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.7 bits (165), Expect = 6e-12
 Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 9/129 (6%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           S     +AL       +   + + +  QA  L     V  A+       LE     +   
Sbjct: 740 SNGGGKQAL-------ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +   +                A+   +  L    Q   L+ +   A       ++A++ 
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE- 851

Query: 132 LKFEEAIAV 140
              +  + V
Sbjct: 852 -TVQRLLPV 859

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 13/91 (14%), Positives = 25/91 (27%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +   + + +  Q   L     V  A+       LE     +    +A  +          
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
                 A+   +  L    Q   L+P+   A
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVA 873

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 9e-10
 Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 9/162 (5%)

Query: 28   KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +   + + +  Q   L     V  A+       LE     +    +   +          
Sbjct: 851  ETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIAS 910

Query: 88   RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHS 147
             G    A+   +  L    Q   L+P+   A       ++A++    +  + V   +   
Sbjct: 911  NG-GKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE--TVQRLLPVLCQDHGL 967

Query: 148  VADSID-YQSIGM-----SPSSSFVSTQAAILAATATVVVAV 183
              + +    S G      S  +       A+ A T   +VA+
Sbjct: 968  TPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVAL 1009

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 19   ALANEAFRA--KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
            A+A+   +   +   + + +  Q   L     V  A+ +     LE     +    +   
Sbjct: 907  AIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHG 966

Query: 77   IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            + P         G          +  +    +  L+ +   A
Sbjct: 967  LTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVA 1008

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 5/131 (3%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +   + +        +   + + +  Q   L     V  A+       LE     +    
Sbjct: 870 QVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQ-ALETVQRLLPVLC 928

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA---AQKVKECEKAV 129
           +   + P              A+   +  L    Q   L+PN   A       +  E  V
Sbjct: 929 QDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIV 988

Query: 130 KKL-KFEEAIA 139
            +L + + A+A
Sbjct: 989 AQLSRPDPALA 999

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 14/146 (9%), Positives = 41/146 (28%), Gaps = 13/146 (8%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS 66
           E + +    +         +      A+ L+  A++ + ++   +        + E+   
Sbjct: 57  EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           AI    + +E+ P           ++      ++A +  +   + +P         +E  
Sbjct: 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176

Query: 127 KA-------------VKKLKFEEAIA 139
                          +    F E   
Sbjct: 177 GGAGLGPSKRILGSLLSDSLFLEVKE 202

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 18/122 (14%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +Y +A+D ++ A+ +   + + +           +   A+    +A+E+ P Y +  Y 
Sbjct: 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK--------AVKKL-KFEEAI 138
            G + + +G  +EA++ F +   +         +     +        A+  L + +   
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

Query: 139 AV 140
           A 
Sbjct: 351 AA 352

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 84.3 bits (209), Expect = 9e-18
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           +         + +  +L+  A+ L+  +                 EY  A+   + A+ +
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            P     + + GA      + +EA+  +++  +L P    +
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 25/137 (18%), Positives = 39/137 (28%), Gaps = 26/137 (18%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY-- 85
           ++   AI    + +EL   N       A + T       A +     +   P Y      
Sbjct: 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171

Query: 86  -------------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA---------QKVK 123
                         R   + L+   F E  + F    +L P   D               
Sbjct: 172 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231

Query: 124 ECEKAVKKLKFEEAIAV 140
           E +KAV    F  A++V
Sbjct: 232 EYDKAVD--CFTAALSV 246

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 11/90 (12%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
           +  +A+  Y +A+EL         N   +   L  +  A++   +A+ +  +        
Sbjct: 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325

Query: 89  GA-----------AYLAMGKFKEALKDFQQ 107
           GA           A   +G+         +
Sbjct: 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 36/128 (28%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR--------- 87
           + +A      +  ++        +LEE      +A   +          Y          
Sbjct: 3   FERAKSAIESDVDFWDK---LQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEEN 59

Query: 88  ----------RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKK 131
                      G   L  G    A+  F+   +  P   +A       Q   E       
Sbjct: 60  PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE------- 112

Query: 132 LKFEEAIA 139
            +   AI+
Sbjct: 113 -QELLAIS 119

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 9/118 (7%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            K   A    S+A  L       +     +     E+  A+     A ++          
Sbjct: 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAI 138
            G  Y      K A + F Q   ++P DP         A +  E + A K   F +A+
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK--WFLDAL 220

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 11/129 (8%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQD 70
           +   AF+  ++  A   +  A+E                   N      KL++Y  A+  
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
             +A+ + P+    Y   G  +  MG F+ A+  F     L  +D  +   +  C +   
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE--M 316

Query: 131 KLKFEEAIA 139
            +   EA  
Sbjct: 317 YIGDSEAYI 325

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 87.3 bits (217), Expect = 4e-19
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A  +      ++ QA+  Y  A +L     +        +        A +  S+A+ I 
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE------KAVKKL 132
           P  P   +  G      G++K A K F    +      +     K            +KL
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

Query: 133 -KFEEAIA 139
            K+ EA+ 
Sbjct: 250 KKYAEALD 257

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            + + +LA   +    +     L S  +E +  +A           +L +       + K
Sbjct: 22  LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDA 118
            +++ P  P  ++  G  YL +G   + A +   +   L      A
Sbjct: 82  LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDA 71
            A  L           K ++   L  + ++L   N V +      +  +  +   A +  
Sbjct: 55  HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           SKA  ++  Y   +   G ++    +  +A+  +    +L       
Sbjct: 115 SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 21/104 (20%), Positives = 39/104 (37%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
             +  E +       L  L +   + KKY++A+D + QA+ L  QNA  Y+   + H+ +
Sbjct: 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
             + +A+     A+ +           G          EA    
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 36  LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95
           +  ++++   +N     + A  H    ++    +  S  +E DP +           + +
Sbjct: 10  VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69

Query: 96  GKFKEALKDFQQVKKLSPNDPDA--------AQKVKECEKAVKKLKFEEAIAV 140
            K  E      ++  L P++P +             + E A +     +A  +
Sbjct: 70  NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARR--YLSKATTL 120

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 93.2 bits (232), Expect = 9e-21
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 8/128 (6%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
              +  +       I     AI  +  +A  +        + E   +AI    + +E+ P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKL 132
              K       +Y      ++A +  +   K +P                +   K+    
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 133 -KFEEAIA 139
              E    
Sbjct: 191 SVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 3   NMETENSSVSRAEELKALANEAFRAK--------------------KYSQAIDLYSQAIE 42
            M       S  E +K L  EA                        ++++AID ++ A+ 
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241

Query: 43  LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102
           +  ++   +          +    A++  ++A+EI P + +  Y  G + + +G ++EA+
Sbjct: 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301

Query: 103 KDFQQVKKLSPNDPDA 118
            +F     L     + 
Sbjct: 302 SNFLTALSLQRKSRNQ 317

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +    AI    + +EL   N       A ++T       A +     I+ +P+Y      
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---------KKL-KFEEA 137
           +  +     +  ++  D   ++ +     +AA +  +                  +F  A
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232

Query: 138 IA 139
           I 
Sbjct: 233 ID 234

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDAS 72
              + ++     +       +LY +A   N    +               E+  AI   +
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            A+ + P     + R GA      + +EA++ + +  ++ P    +
Sbjct: 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 1/117 (0%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
             M+ E   ++R   + +   EA      S +   Y    E   ++            K 
Sbjct: 20  DKMQAEWEEMARRNWI-SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKE 78

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            +    I     AI  DP   + +   G         + A+   Q+  +L PN+  A
Sbjct: 79  GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 22/127 (17%)

Query: 27  AKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A ++ +A        E                + +            ++ +      E  
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKL 132
            +   G +  G   L  G     +   +      P D +A       Q   E        
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE-------- 113

Query: 133 KFEEAIA 139
             + AI 
Sbjct: 114 NEQAAIV 120

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 9/108 (8%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
            LAN      +  +A++ Y++A+E+         N   +   L  Y  A+ +   A+ + 
Sbjct: 256 TLANG----DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311

Query: 79  PRYPKGYYRRGAAY--LAMGKFKEALKDFQQ---VKKLSPNDPDAAQK 121
            +          A         + AL    Q    +  +  D D   +
Sbjct: 312 RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLR 359

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 86.7 bits (216), Expect = 1e-20
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   KA+E+DP   + +Y 
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G AY   G + EA++ +Q+  +L PN+ +A
Sbjct: 83  LGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   KA+E+DP   +    
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

Query: 88  RGAAYLAMG 96
            G A    G
Sbjct: 117 LGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.0 bits (165), Expect = 1e-13
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 43  LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101
           ++  N A  + N   A+ K  +Y  AI+   KA+E+DP   + +Y  G AY   G + EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 102 LKDFQQVKKLSPNDPDA 118
           ++ +Q+  +L PN+ +A
Sbjct: 63  IEYYQKALELDPNNAEA 79

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
               +   +         QA+ +   A  +N + A  +  R   +  L E   A     +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+ ++   P+        YL+MG+  EAL  + +  + +P D D 
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L  + +   +Y  A+ L+ +A++ N Q+       A    KL     A+++    +   P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 80  RYPKGYYRRGAAYLAM-----------GKFKEALKDFQQVKKLSPNDPDA 118
           RY  GY     AY+A+           G  ++AL   +  ++++P     
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +  +A     QA+ L        +  A  +  +     A+   +KA+E  P+      R
Sbjct: 132 GERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPN 114
             +A L  GK +EA +          +
Sbjct: 191 YASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 77.2 bits (191), Expect = 2e-16
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS-----------AIQDASKAIE 76
              + A++     +    +    Y   + A+  L                A+     A  
Sbjct: 53  GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           ++PRY   + +RG  Y  +G+  +A    +Q   L    P+ 
Sbjct: 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEI 153

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 70.6 bits (174), Expect = 4e-14
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 41  IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100
           ++   QN             L  Y +A+    +A++ +P+ P+  Y      L +G    
Sbjct: 1   MQTAEQN---PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57

Query: 101 ALKDFQQVKKLSPNDPDA---------AQKVKECEKAVKKLKFEEAIA 139
           AL++ + +   +P              A   +  ++   K   E+A++
Sbjct: 58  ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 87.8 bits (217), Expect = 1e-18
 Identities = 15/133 (11%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG-SAIQDAS 72
            E+      +    ++  + +    + +      A     +  A     +Y   A    S
Sbjct: 70  VEDAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLS 127

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECE 126
           KA++++P   + + + G  Y   G    A   F        N           ++++   
Sbjct: 128 KAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS 187

Query: 127 KAVKKLKFEEAIA 139
                    +++ 
Sbjct: 188 GDEHSRHVMDSVR 200

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 80.4 bits (198), Expect = 3e-16
 Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-----------KLEEYGSA 67
              +    ++    ++     A++++  +   +     A+              ++  SA
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
              A K        P  +  R   +     + EAL+ F Q   L P  P+  Q+ ++  +
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303

Query: 128 AVKKLKFEEAIA 139
            + +L     + 
Sbjct: 304 FLSRL--TSLLE 313

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 78.9 bits (194), Expect = 8e-16
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASK 73
           L    N     K   QA+  Y+QA +++ +   N   + NRA  H   E YG A++  S+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK---------KLSPNDPDAAQKVKE 124
           A  +DP +P+   R       + +    L+   + K          L P         + 
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRY 343

Query: 125 CEKAVKKLKFEEAIAVPESE 144
              + +K+  E         
Sbjct: 344 QSASGQKMTLELKPLSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 18/110 (16%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---------AIQDASKAIEID 78
              + A   +S A+           N +    +L+             +++ A  A+++D
Sbjct: 151 GDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209

Query: 79  PRYPKGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAAQ 120
               + +Y  G AYL+            ++AL  + Q +K+         
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 83.1 bits (206), Expect = 4e-18
 Identities = 13/127 (10%), Positives = 38/127 (29%), Gaps = 17/127 (13%)

Query: 28  KKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
           K+Y +A     +A +  L  + +  + N      ++++   A +   K++ ++   P   
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------------AQKVKECEKAVKKL 132
                      ++  A + +    +    +  +                       +K+L
Sbjct: 179 LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

Query: 133 K--FEEA 137
                E 
Sbjct: 239 YPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 82.7 bits (205), Expect = 6e-18
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L     +     QA     +A+E++  +A  +A  A       E   A ++  KA+  D 
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQV--KKLSPNDPDA-------AQKVKECEKAVK 130
           R  +     G       +++EA +   +     L P            + ++K+  +A +
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162

Query: 131 KLKFEEAIA 139
              FE+++ 
Sbjct: 163 --YFEKSLR 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 77.3 bits (191), Expect = 4e-16
 Identities = 19/109 (17%), Positives = 36/109 (33%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
            R+   + L   + + KK +QA + + +++ LN          A    K  EY  A Q  
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
               +   +  +                 A     Q+K+L P   +  +
Sbjct: 199 DLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 76.5 bits (189), Expect = 8e-16
 Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 22  NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
           +     +          +  +   +    Y      + +      A     KA+EIDP  
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA-------QKVKECEKAVKKLKF 134
              +      +    + K A +++++       +            + K  E+A +  + 
Sbjct: 71  ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ--RL 128

Query: 135 EEAIAVP 141
            EA    
Sbjct: 129 LEASQDT 135

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-- 76
           ALA       +   A + Y +A+  +S+NA    N      + + Y  A Q   +A +  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           + P   + +   G   L M K  +A + F++  +L+ N P  
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 85.3 bits (211), Expect = 1e-17
 Identities = 15/107 (14%), Positives = 32/107 (29%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
                 LA+        +       + + L+  +    A         + +  A     +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           A +  P +P      G A    G+ + A   + +  +L P +P    
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 15/89 (16%), Positives = 30/89 (33%)

Query: 30  YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89
             + +     A+    Q+ V +   A A   + +  +      + + + P +P+   R G
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 90  AAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
                  +  EA    QQ    +P  P  
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 14/107 (13%), Positives = 36/107 (33%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E +  L    +  +++++A  L  QA +   ++         A     +  +A    ++
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           A ++ P  P    +       +  ++       QV+        A +
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
            +     A+   P+    +     A L MG         Q+   L P  P+A  ++    
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67

Query: 127 KAVKKLK-----FEEAIAV 140
              ++        ++A   
Sbjct: 68  WTQQRHAEAAVLLQQASDA 86

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 85.2 bits (210), Expect = 1e-17
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ L  LAN         +A+ LY +A+E+  + A  ++N A    +  +   A+    +
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AI I P +   Y   G     M   + AL+ + +  +++P   DA   +    K    + 
Sbjct: 69  AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI- 127

Query: 134 FEEAIA 139
             EAIA
Sbjct: 128 -PEAIA 132

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 84.1 bits (207), Expect = 4e-17
 Identities = 25/99 (25%), Positives = 50/99 (50%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA+   +  K  +A+  Y +AI ++   A  Y+N      ++++   A+Q  ++AI+I+P
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            +   +    + +   G   EA+  ++   KL P+ PDA
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 68.3 bits (166), Expect = 3e-12
 Identities = 17/105 (16%), Positives = 41/105 (39%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+    + N     +    A+  Y++AI++N   A  ++N A  H        AI     
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+++ P +P  Y         +  + +  +  +++  +  +  + 
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
            +A    N A    +      A++   KA+E+ P +   +    +     GK +EAL  +
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 106 QQVKKLSPNDPDA 118
           ++  ++SP   DA
Sbjct: 67  KEAIRISPTFADA 79

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 12/104 (11%), Positives = 29/104 (27%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E          +    ++A   +    +   +    + +      + E+ G AI   + 
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           A  +DP+    +     ++        AL   +      P    
Sbjct: 77  ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 10/66 (15%), Positives = 17/66 (25%)

Query: 53  NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
               +  KL     A        + +P   + +   G       K   A+      + L 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 113 PNDPDA 118
           P D   
Sbjct: 82  PKDIAV 87

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            +     LA E  R + Y QA      A++ + +N + +  RA  +  L+    A +   
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 73  KAIEIDPRYPKGYYRRGAA-YLAMGKFKEALKDFQQV--KKLSPNDPDA-------AQKV 122
           +A+ I P   +     G      + +  E++  F +       P    A       + K 
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ 126

Query: 123 KECEKAVKKLKFEEAIA 139
            +   A      + ++A
Sbjct: 127 GQFGLAEA--YLKRSLA 141

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 26  RAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83
           R  + ++++  + +A+         +   N+     K  ++G A     +++   P++P 
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148

Query: 84  GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
            +       +  G+  +A   F++ +          
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 42  ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101
           E  +Q +      A  + + ++Y  A      A++ DP+    +  R   Y  +    +A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 102 LKDFQQVKKLSPNDPDA--------AQKVKECEKAVKKLKFEEAIAVPESERHSVA 149
            + F+Q   + P+  +           ++    +++    F++A+A P      +A
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA--YFDKALADPTYPTPYIA 115

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 10/108 (9%), Positives = 25/108 (23%), Gaps = 2/108 (1%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
                      + +  ++  A     +++    Q    +   A       + G A     
Sbjct: 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           K                  +        A   ++   +L  N P + +
Sbjct: 172 KYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 77.2 bits (190), Expect = 9e-17
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIE 76
           L         YS ++  Y QA++L  +NA  YA  A                    KA+ 
Sbjct: 50  LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA 109

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
           +D           +       + +A++ +Q+V  L+    +  Q V+    A    +  +
Sbjct: 110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD 169

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 17/154 (11%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           +  +  +   ++    +     +      I  N QN+  +A     +    +Y +++   
Sbjct: 8   AEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAY 67

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGK---FKEALKDFQQVKKLSPNDPDA-------AQK 121
            +A+++     + Y                 +      +   L  N+  A       A  
Sbjct: 68  RQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM 127

Query: 122 VKECEKAVKKLKFEEAIAV--PESERHSVADSID 153
                +A++   +++ + +  P   R  + +SI+
Sbjct: 128 QANYAQAIE--LWQKVMDLNSPRINRTQLVESIN 159

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 81.9 bits (202), Expect = 1e-16
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 16/136 (11%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKA 74
           +          +  +A   + +A+E   +N  + +  A A  +L+ +     AI    +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201

Query: 75  IEIDPRYPKGYYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDA-------AQKVK 123
           I ++P               M     +  E  K  ++  + +P   D         ++  
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

Query: 124 ECEKAVKKLKFEEAIA 139
           E +KA++    ++A+ 
Sbjct: 262 EPDKAIE--LLKKALE 275

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 77.3 bits (190), Expect = 3e-15
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 19/126 (15%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK------------- 60
            + L++ A    R  +  +AI+L  +A+E    NA  +      +               
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 61  ------LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
                 LE  G A+    KA E +    +      + +    +++EA   FQ+       
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 115 DPDAAQ 120
                 
Sbjct: 367 PVAKQL 372

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 73.8 bits (181), Expect = 4e-14
 Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 28/147 (19%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
            L       ++  +   L  +A+E          + A  + + +E   AI+   KA+E  
Sbjct: 218 KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

Query: 79  PRYPKGYYRRGAAYLAMGK-------------------FKEALKDFQQVKKLSPNDPDAA 119
           P     + + G  Y A                         A+   ++  + + N     
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337

Query: 120 -------QKVKECEKAVKKLKFEEAIA 139
                      + E+A     F++  +
Sbjct: 338 SILASLHALADQYEEAEY--YFQKEFS 362

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 12/95 (12%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 25  FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
           ++ K   +AI  + + +++N ++      +     KL++       A   +  +    + 
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSR----EKEKMKDKLQKI------AKMRLSKNGADSEA 432

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
            +          K ++A +D ++  +     P A+
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 29/151 (19%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLE 62
            +A     LA       +   A++   +A EL  Q         + V + N A+ +  + 
Sbjct: 49  FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 63  EYGSAIQDASKAIEIDPRYPKG--------YYRRGAAYLAMGK--FKEALKDFQQVKKLS 112
                     K   +  ++               G   L  G    + A   F++  +  
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 113 PNDPDAA----------QKVKECEKAVKKLK 133
           P +P+                  + A+  L+
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 19/137 (13%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQ--------NAVYYANRAFAHTKL--EEYGSAIQ 69
            A   +   + S       +   +  +        +        +   K    +   A  
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFK---EALKDFQQVKKLSPNDPDA----AQKV 122
              KA+E  P+ P+       A   +  +     A+   +Q  +L+P++       A K+
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 123 KECEKAVKKLKFEEAIA 139
            +  +  ++    E   
Sbjct: 220 HKMREEGEEE--GEGEK 234

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 19/127 (14%)

Query: 32  QAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---------DPR 80
              D      E       A      A+      +  +A++   KA E+         + R
Sbjct: 33  DFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR 92

Query: 81  YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE---CEKAVKKLK---- 133
               +      Y  MG+  +      +VK +        +       CE+   +LK    
Sbjct: 93  SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN 152

Query: 134 -FEEAIA 139
             E A  
Sbjct: 153 QNERAKV 159

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 17  LKALA---NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           ++ +        + K   +   +    +  N  ++      AF     E+   A +D+ +
Sbjct: 396 IEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455

Query: 74  AIEIDPRYPKGYYRRG 89
            +E     P      G
Sbjct: 456 GLESGSLIPSASSWNG 471

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 29  KYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
             +QA+  Y +AI    Q       Y         L EY  A    +  ++  P +    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
                    +G++++ ++   ++   + +D  
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
             AE    L +      +Y +A  + +  ++    +       A     L  Y   ++  
Sbjct: 25  DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84

Query: 72  SKAIEIDPRYPK-GYYRRGAAYLA 94
            K I           Y++   + A
Sbjct: 85  LKIIAETSDDETIQSYKQAILFYA 108

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 61  LEEYGSAIQDASKAIEI---DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           L     A+    KAI          + Y   G+ +  +G++++A        K  PN   
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 118 AA-------QKVKECEKAVKKLKFEEAIA 139
                      +   E+ V+     + IA
Sbjct: 63  LRVFYAMVLYNLGRYEQGVE--LLLKIIA 89

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 76.7 bits (188), Expect = 1e-15
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
            A  + A   +K   A  ++ +  +  S   +    +A  H     + +A     +A++ 
Sbjct: 170 TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDF-QQVKKLSPNDP---DAAQKVKECEKAVKK 131
           D  +P+           +GK  E    +  Q+K    + P   +   K  + ++ V +
Sbjct: 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQ 287

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 68.2 bits (166), Expect = 8e-13
 Identities = 12/111 (10%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 13  RAEELKALANEA---FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL--EEYGSA 67
           + + L+ +A       +  +   A     +  + +    +     A+       E+   A
Sbjct: 126 QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
                +  +           + A ++A G+++ A    Q+        P+ 
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 4/133 (3%)

Query: 24  AFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYP 82
           AF    Y Q I+   +    + +  V        A+    +YG  + +   +   + +  
Sbjct: 9   AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAV 68

Query: 83  KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142
           + +        +  +    + +  +    S +  +    +            + A+    
Sbjct: 69  RMFAE---YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 143 SERHSVADSIDYQ 155
                   ++  Q
Sbjct: 126 QGDSLECMAMTVQ 138

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3 Length = 221

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 21/147 (14%)

Query: 286 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF 345
            ID    ++  V GD+HG + +L+N  +  G  ++++  +  GD VDRG+ +VE +    
Sbjct: 6   KIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL---- 61

Query: 346 AFKCMCPSAIYLSRGNHESKSMNKIY------------GFEGEVRSKLSETFVELFAEVF 393
                 P    + RGNHE   ++ +             G          E   +  A   
Sbjct: 62  EL-ITFPWFRAV-RGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKA 119

Query: 394 CCLPLAHVL---NQKVFVVHGGLFSVD 417
             LPL   L   ++K  + H      +
Sbjct: 120 DELPLIIELVSKDKKYVICHADYPFDE 146

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 72.2 bits (176), Expect = 3e-15
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 23/144 (15%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFA 57
            V  A    + A     A +Y +A     +A+E++              +A  +A  A A
Sbjct: 7   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66

Query: 58  HTKLEEYGSAIQDASKAIEIDPR-----------YPKGYYRRGAAYLAMGKFKEALKDFQ 106
              L  +  A+  A KA+    R           +    Y R  A   +G+  EA+ +F+
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 107 QVKKLSPNDPDAAQKVKECEKAVK 130
           +V ++           +   +   
Sbjct: 127 KVVEMIEERKGETPGKERMMEVAI 150

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           ++       A  H K +    A+    + +E DP Y   YY  G  Y  + +  +A+  +
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 106 QQVKKLSPNDPDAAQKVKECEKAVKKLK 133
            Q  +++  +    + + E + A  K +
Sbjct: 65  AQGIEVAREEGT-QKDLSELQDAKLKAE 91

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.1 bits (149), Expect = 7e-12
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           ALA E  +    S+A+ L+ + +E +      Y +    + +L+    AI   ++ IE+ 
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDF 105
                           +   K   +  
Sbjct: 72  REEGTQK-----DLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVK 130
           DP  P   Y     +L       AL  F+++ +  P+            +++   + A+ 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 131 KLKFEEAIAV 140
              + + I V
Sbjct: 63  --TYAQGIEV 70

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 72.0 bits (176), Expect = 9e-14
 Identities = 12/116 (10%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           K   + ++  +  IE   +N   + +R      L +    ++  +  +  D +    +  
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----AQKVKECEKAVKKLKFEEAIA 139
           R         +   L+   Q+ K    +          +        +   E  + 
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 26  RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
             +  SQ ++  +  +  +++N   + +R +   + + + + +Q   + ++ D R    +
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237

Query: 86  YRRGAAYLAMGKF------KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
            +R         +      +  ++   ++ KL P++  A   +K   +     K+   +
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 26  RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKG 84
           R ++  +A  L   AIELN+ N   +  R      L+ +    +   +  IE  P+  + 
Sbjct: 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           ++ R      +    + L+    +      +  A
Sbjct: 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 40  AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-F 98
            I  + +    Y        + E    A +    AIE++      ++ R     ++ K  
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 99  KEALKDFQQVKKLSPNDPDA 118
            E +     + +  P +   
Sbjct: 149 HEEMNYITAIIEEQPKNYQV 168

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 20 LANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAFAHTKLEEYGSAIQDASKAIEI 77
             E         A+    + ++         YY     A+ KL ++  A+ +   AIE+
Sbjct: 6  TIKELINQGDIENALQALEEFLQTEPVGKDEAYY-LMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 78 DPRYPKGYYRR 88
          +P  P    R+
Sbjct: 65 NPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 16/86 (18%)

Query: 34  IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAAY 92
           +D      EL +Q              +E    A+Q   + ++ +P    + YY  G AY
Sbjct: 1   MDQLKTIKELINQG------------DIEN---ALQALEEFLQTEPVGKDEAYYLMGNAY 45

Query: 93  LAMGKFKEALKDFQQVKKLSPNDPDA 118
             +G +++AL ++Q   +L+P+ P  
Sbjct: 46  RKLGDWQKALNNYQSAIELNPDSPAL 71

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 64.7 bits (159), Expect = 3e-13
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   KA+E+DP   +    
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82

Query: 88 RGAAYLAMG 96
           G A    G
Sbjct: 83 LGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 64.0 bits (157), Expect = 5e-13
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 43  LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101
           ++  N A  + N   A+ K  +Y  AI+   KA+E+DP   + +Y  G AY   G + EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 102 LKDFQQVKKLSPNDPDA 118
           ++ +Q+  +L PN+ +A
Sbjct: 63  IEYYQKALELDPNNAEA 79

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 66.3 bits (161), Expect = 6e-12
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           +      K+ +         + L   N  ++ Y  +A +     +   + Q  +  I+++
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
             +   Y   G  Y   G  +EA   +     L P   
Sbjct: 308 MSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 13/116 (11%)

Query: 12  SRAEELKALANEAFR---AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--- 65
                    A++       K  ++A +L  + ++ + +     A +A             
Sbjct: 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253

Query: 66  -----SAIQDASKAIEID--PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
                +   +    + +         Y  +  + L  GK  E+ +       L  +
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 2/97 (2%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           +   +  A  A    K  ++    +  I+L   + + Y      +        A      
Sbjct: 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLT 335

Query: 74  AIEIDPRYPKGYY-RRGAAYLAMGKFKEALKDFQQVK 109
           A  + P     Y+   G    ++      L  F   +
Sbjct: 336 AFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLASE 372

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei} Length = 262

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 278 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS 337
           ++   ++V +    G+   V GD+HG    L ++          +  +  GD V++G  S
Sbjct: 5   VQGYANVVTLPNVTGRVIIV-GDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDS 63

Query: 338 VEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEV----- 392
             V+            A  +  GNH++K +  +     +   K  +    L         
Sbjct: 64  FGVV----RL-LKRLGAYSV-LGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPT 117

Query: 393 ----FC-CLPLAHVL-NQKVFVVHGGL 413
               +   LP    +    V V H GL
Sbjct: 118 DVETYLSQLPHIIRIPAHNVMVAHAGL 144

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.0 bits (146), Expect = 8e-10
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSA 67
           +   EL        ++      +  +  A+++ +++    +  Y+    A+  L +Y  A
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 66

Query: 68  IQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           ++     + +           K     G     +G F EA+   Q+
Sbjct: 67  LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
                 L N      ++  A + Y + + L  Q       A    +    +T L++Y  A
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286

Query: 68  IQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           I    K + I           +  +  G AY A+G   +A+   ++
Sbjct: 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 31/158 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
                A+D Y + + L +           + N    H  L  +  A+    + + I   +
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220

Query: 82  P------KGYYRRGAAYLAMGKFKEALKDFQQ---VKKLSPNDPDAAQ----------KV 122
                  + Y   G AY+ +G+F+ A + +++   + +   +    AQ           +
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280

Query: 123 KECEKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIG 158
           ++ EKA+      + +A+ +   +R     +    S+G
Sbjct: 281 QDYEKAID--YHLKHLAIAQELNDRIGEGRA--CWSLG 314

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 17/171 (9%), Positives = 53/171 (30%), Gaps = 37/171 (21%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           L N  +    +  A+  + Q + +       +     Y+N   A+  L E+ +A +   K
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 74  AIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ---VKKLSPNDPDAA-- 119
            + +     +   R          G  Y  +  +++A+    +   + +   +       
Sbjct: 253 TLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309

Query: 120 --------QKVKECEKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIGMS 160
                     +   ++A+     E+ + +     ++     +    ++   
Sbjct: 310 CWSLGNAYTALGNHDQAMH--FAEKHLEISREVGDKSGELTA--RLNLSDL 356

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 17/156 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSA 67
           +     L N  F    Y++A++ +   + L          A    N       L  +  A
Sbjct: 47  SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

Query: 68  IQDASKAIEIDPRYPKGYYRRG--AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           I    + ++I     +   + G   A   +G    A                  +     
Sbjct: 107 IVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163

Query: 126 EKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIGM 159
           + AV    +EE +++  +  +R +   +  + ++G 
Sbjct: 164 QAAVD--FYEENLSLVTALGDRAAQGRA--FGNLGN 195

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSA 67
           +   EL        ++      +  +  A+++ +++    +  Y+    A+  L +Y  A
Sbjct: 3   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 62

Query: 68  IQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           ++     + +           K     G     +G F EA+   Q+
Sbjct: 63  LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
                 L N      ++  A + Y + + L  Q       A    +    +T L++Y  A
Sbjct: 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282

Query: 68  IQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           I    K + I           +  +  G AY A+G   +A+   ++
Sbjct: 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 31/158 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
                A+DLY + + L +           + N    H  L  +  A+    + + I   +
Sbjct: 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216

Query: 82  ------PKGYYRRGAAYLAMGKFKEALKDFQQ---VKKLSPNDPDAA----------QKV 122
                  + Y   G AY+ +G+F+ A + +++   + +   +    A            +
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276

Query: 123 KECEKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIG 158
           ++ EKA+      + +A+ +   +R     +    S+G
Sbjct: 277 QDYEKAID--YHLKHLAIAQELKDRIGEGRA--CWSLG 310

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           L N  +    +  A+  + Q + +       +     Y+N   A+  L E+ +A +   K
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 74  AIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
            + +           +  Y  G  Y  +  +++A+    +
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 17/155 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSA 67
           +     L N  F    Y++A++ +   + L          A    N       L  +  A
Sbjct: 43  SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

Query: 68  IQDASKAIEIDPRYPKGYYRRG--AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           I    + ++I     +   + G   A   +G    A                        
Sbjct: 103 IVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159

Query: 126 EKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIG 158
           + AV    +EE +++  +  +R +   +  + ++G
Sbjct: 160 QAAVD--LYEENLSLVTALGDRAAQGRA--FGNLG 190

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 12/122 (9%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAF 56
            M  EN +   A      A +       S+A+ LY QA  +          A      + 
Sbjct: 104 VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163

Query: 57  AHTKLEEYGSAIQDASKAIEIDPRYP------KGYYRRGAAYLAMGKFKEALKDFQQVKK 110
              + +++  A     K   +           K    +    L    +  A K  ++   
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

Query: 111 LS 112
           + 
Sbjct: 224 IP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
           A E    A     AK+  QA D Y Q  E ++ N      A  +         L+    A
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95

Query: 68  IQDASKAIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           +Q   KA  +      P        R    +      +A+  +QQ   +  N+    Q  
Sbjct: 96  VQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 123 KECEKA----VKKLKFEEAIAV 140
           +   KA    V++ KF+EA A 
Sbjct: 156 ELIGKASRLLVRQQKFDEAAAS 177

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 15/133 (11%), Positives = 34/133 (25%), Gaps = 13/133 (9%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAF 56
             E E      AE +   +    R +K+ +A     +   +  +             +  
Sbjct: 144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203

Query: 57  AHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRRGAAYLAM--GKFKEALKDFQQVKK 110
                 +Y +A +   ++  I                 AY      +     +    V  
Sbjct: 204 VQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS-PLVTY 262

Query: 111 LSPNDPDAAQKVK 123
           +  +    A  +K
Sbjct: 263 MDNDYAKLAISLK 275

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 29/155 (18%)

Query: 29  KYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82
                 + +    +  S +       +  A          +  + +     AI+      
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82

Query: 83  KG----YYRRGAAYLAMGKFKEALKDFQQ---VKKLSPNDPDAA----------QKVKEC 125
           +     Y + G AY  +G + +A++  +    + K   +    A          + +   
Sbjct: 83  RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142

Query: 126 EKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIG 158
           ++A      E  + +     +R S   +    ++G
Sbjct: 143 DEAAI--CCERHLTLARQLGDRLSEGRA--LYNLG 173

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 16/109 (14%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSA 67
           S   EL         A      +  +  AI+  +++    +  Y+    A+  L +Y  A
Sbjct: 46  SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105

Query: 68  IQDASKAIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ 107
           +Q     + +         R          G     MG+F EA    ++
Sbjct: 106 MQYHKHDLTL---AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTK 60
           + ++  RA     L N      ++  A + Y + + L          A    +    +T 
Sbjct: 258 DRAAERRA--NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315

Query: 61  LEEYGSAIQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           L E+ +AI+  ++ + I           +  +  G A+ A+G  + ALK  +Q  +L+
Sbjct: 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 48/189 (25%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSA 67
           A+    L N      ++ +A     + + L  Q            N    +    ++   
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185

Query: 68  IQDASKAIEIDPRYPK--GYYRR---------------------GAAYLAMGKFKEALKD 104
                   ++     +   +Y+                      G  Y  +G F+ A++ 
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245

Query: 105 FQQ---VKKLSPNDPDAA----------QKVKECEKAVKKLKFEEAIAVPES--ERHSVA 149
            Q+   + +   +                 + + E A +   ++  +A+     ER   A
Sbjct: 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE--HYKRTLALAVELGEREVEA 303

Query: 150 DSIDYQSIG 158
            S    S+G
Sbjct: 304 QS--CYSLG 310

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 23/136 (16%)

Query: 42  ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAM 95
            L S +++  +    +   L   G          +                  G      
Sbjct: 2   PLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNA 61

Query: 96  GKFKEALKDFQQVKKLSPND-PDAA----------QKVKECEKAVKKLKFEEAIAVPES- 143
           G  +  +  FQ   +    D    +            + +  KA++    +  + + +S 
Sbjct: 62  GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQ--YHKHDLTLAKSM 119

Query: 144 -ERHSVADSIDYQSIG 158
            +R   A S    ++G
Sbjct: 120 NDRLGEAKS--SGNLG 133

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASK 73
           +A      K Y +A+     A+EL          A+   N A ++ +  +   A++   K
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247

Query: 74  AIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           A ++         PK  +         G+ ++A +  ++     
Sbjct: 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 28/157 (17%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQD 70
           L       F  K+Y +AI  Y +A +           A ++   A A+  +++   ++  
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163

Query: 71  ASKAIEIDPRYPKGYYRR-------GAAYLAMGKFKEALKDFQQVKKLS---PNDPDAA- 119
             +A++I   +P    R           Y     + +AL   +   +L+    ND   A 
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223

Query: 120 ---------QKVKECEKAVKKLKFEEAIAVPESERHS 147
                     +  + + AV+   F++A  V   +   
Sbjct: 224 SLLNIANSYDRSGDDQMAVE--HFQKAAKVSREKVPD 258

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 24/133 (18%)

Query: 9   SSVSRAEELKALANE---AFRAKKYSQAIDLYSQA------IELNSQNAVYYANRAFAHT 59
           S    +  +    NE     R      A  L ++       +E +    +YY+   F H 
Sbjct: 4   SQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQ 63

Query: 60  KLEEYGSA---------IQDASKAIEIDPRYPKG------YYRRGAAYLAMGKFKEALKD 104
            + +Y            + +  + IE   +   G       + RG       ++ EA+  
Sbjct: 64  LMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY 123

Query: 105 FQQVKKLSPNDPD 117
           +++ +K  P   D
Sbjct: 124 YREAEKELPFVSD 136

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-------YANRAFAHTKLEEYGS 66
           AE    +A   +  K+   ++    QA+++   + +Y           A  +   + Y  
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200

Query: 67  AIQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           A+     A+E+      D            +Y   G  + A++ FQ+  K+S  
Sbjct: 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 9/111 (8%), Positives = 32/111 (28%), Gaps = 7/111 (6%)

Query: 4   METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLE 62
           +  E       + L  L+    +A +  +A     + ++  +  +  +Y         + 
Sbjct: 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY 310

Query: 63  EYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           +     +     +                    A + +   F++A   +++
Sbjct: 311 KETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAH 58
           E E  ++   +     A      K+Y  AI  + +A  +               N     
Sbjct: 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234

Query: 59  TKLEEYGSAIQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
               +Y  AI    +AI +       P  P+ Y+     +  +GK  +A +   +    S
Sbjct: 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294

Query: 113 P--NDPDAAQKVKECEKAVKKLKFEEAI 138
               D     + +  +        EEAI
Sbjct: 295 QKAGDVIYLSEFEFLKSLYLSGPDEEAI 322

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 15/112 (13%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASK 73
                   ++Y  AI  + +A             A ++   + ++  +++   ++  A +
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

Query: 74  AIEIDPRYPKGYYRR--------GAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           A EI   + + Y  R           +L + ++++A+  FQ+   ++  +  
Sbjct: 169 AYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL-------NSQNAVYYANRAFAHTKLEEYGS 66
           AE    ++   +  K+   ++D   QA E+       N +    ++  A     L++Y  
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYED 202

Query: 67  AIQDASKAIEIDPRYP------KGYYRRGAAYLAMGKFKEALKDFQQ 107
           AI    KA  +           +  Y  G    +  ++++A+  F++
Sbjct: 203 AISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 27/164 (16%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K    E  R       ID     +        +   R        EY SAI+   KA   
Sbjct: 74  KMRIEEQPRLSDLLLEIDKKQARLT-GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK 132

Query: 78  DPRYP------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC------ 125
                      + +++   +Y  M +   ++   +Q  ++         ++ +C      
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192

Query: 126 --------EKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIGM 159
                   E A+    F++A ++ E+  +   +  +    +IG+
Sbjct: 193 NFLDLKQYEDAIS--HFQKAYSMAEAEKQPQLMGRT--LYNIGL 232

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 20  LANEAFRAKKYSQAIDLYSQAI----ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75
           +    ++  K  +A + +S+ +    +      +       +         AIQ     +
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329

Query: 76  EIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQ 107
           E    Y             Y     F++A   F +
Sbjct: 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 14/123 (11%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQ-----NAVYYANRAFAHTKLEEYGSAIQDASKAI 75
           A +A +  KY  A  L+   +EL        NA+Y+     ++     +  A       +
Sbjct: 9   AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYW--LGESYYATRNFQLAEAQFRDLV 66

Query: 76  EIDP---RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
              P   +   G  + G +    GK  EA +  QQV    P    AA+  +   + ++ +
Sbjct: 67  SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD-AARVAQ---ERLQSI 122

Query: 133 KFE 135
           +  
Sbjct: 123 RLG 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 74/562 (13%), Positives = 152/562 (27%), Gaps = 192/562 (34%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
           +++    S+   EE+  +           +          L+ Q  +      F    L 
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-----LSKQEEMVQK---FVEEVLR 88

Query: 63  -EYG---SAIQDASKAIEIDPRYPKGYY--RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
             Y    S I+   +     P      Y  +R   Y           D Q   K + +  
Sbjct: 89  INYKFLMSPIKTEQR----QPSMMTRMYIEQRDRLY----------NDNQVFAKYNVSRL 134

Query: 117 DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAAT 176
              Q   +  +A+ +L+  + + +                 G+             L + 
Sbjct: 135 ---QPYLKLRQALLELRPAKNVLI-----D-----------GV-------------LGSG 162

Query: 177 ATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYW--WGSC-SGSDVFTKSRKLELEVEPQ 233
            T V   V               V   M    +W    +C S   V    +KL  +++P 
Sbjct: 163 KTWVALDV----------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 234 YSGARIEGDV---ITLDFVKK----------------MMDDFKNQKCLHKRYAF----QI 270
           ++ +R +      + +  ++                 ++ + +N K  +   AF    +I
Sbjct: 213 WT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---AFNLSCKI 268

Query: 271 VLQTREMLRALPSLVD-IDIPDGKHFTVCGDVHGQFY--DLLNIF------ELNGLPSEE 321
           +L TR        + D +      H ++           ++ ++           LP E 
Sbjct: 269 LLTTRFK-----QVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 322 ---NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 378
              NP                  L++ A          L+  ++  K +N          
Sbjct: 323 LTTNPRR----------------LSIIAESI----RDGLATWDN-WKHVNC--------- 352

Query: 379 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSV--DGVKLSDIKTIDRFCEPPEE 436
            KL+   +E    V     L     +K+F       SV      +            P  
Sbjct: 353 DKLTTI-IESSLNV-----LEPAEYRKMFD----RLSVFPPSAHI------------PTI 390

Query: 437 GLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV-------KD 489
            L   L+W D          K  V +          ++    +  +    +        +
Sbjct: 391 LL--SLIWFD--------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 490 EGYEIEHDGKLITVFSAP-NYC 510
             Y + H   ++  ++ P  + 
Sbjct: 441 NEYAL-HR-SIVDHYNIPKTFD 460

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 48/368 (13%), Positives = 107/368 (29%), Gaps = 131/368 (35%)

Query: 1   MPNMETENSSVS----RAEELKALANEAFRAKKYSQAI----DLYS----QAIELNSQ-- 46
            PN  + +   S    R   ++A      ++K Y   +    ++ +     A  L+ +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 47  ---------NAVYYANR----------AFAHTKLEEY-----GSAIQD-ASKAIEIDPRY 81
                    + +  A                 +++           QD   + +  +P  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-- 327

Query: 82  PKGYYRRGAAYLAMGKFKEALKDF----QQVKKLSPNDPDAAQKVKEC-EKAVKKLKFEE 136
                        +    E+++D        K ++ +      K+    E ++  L+   
Sbjct: 328 -----------RRLSIIAESIRDGLATWDNWKHVNCD------KLTTIIESSLNVLE--- 367

Query: 137 AIAVPESERHSVADSIDYQSIGMSPSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVA 196
               P   R        +  + + P S+ + T              ++ ++W  V  +  
Sbjct: 368 ----PAEYRKM------FDRLSVFPPSAHIPTI-------------LLSLIWFDVIKSDV 404

Query: 197 GMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFVKKMMDDF 256
            +VV  L                    +   +E +P+ S   I    I L+   K+    
Sbjct: 405 MVVVNKLH-------------------KYSLVEKQPKESTISIPS--IYLELKVKL---- 439

Query: 257 KNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIP--D-------GKHFTVCGDVHGQFYD 307
           +N+  LH+      ++    + +   S  D+  P  D       G H       H +   
Sbjct: 440 ENEYALHRS-----IVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIE--HPERMT 491

Query: 308 LLNIFELN 315
           L  +  L+
Sbjct: 492 LFRMVFLD 499

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 17/175 (9%), Positives = 48/175 (27%), Gaps = 32/175 (18%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYG 65
           + +     L        ++ +A   +    +   ++                      + 
Sbjct: 24  TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83

Query: 66  SAIQDASKAIEIDPRYPK-------GYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDP 116
           +A +   +  E+    P+         Y      L  G    A +++++    +   +D 
Sbjct: 84  AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143

Query: 117 -----------DAAQKVKECEKAVKKLKFEEAIAVPES--ERHSVADSIDYQSIG 158
                      D AQ+ K   +A +   +  A  +     +  +V +      + 
Sbjct: 144 VAIACAFRGLGDLAQQEKNLLEAQQ--HWLRARDIFAELEDSEAVNEL--MTRLN 194

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 12/106 (11%), Positives = 26/106 (24%), Gaps = 12/106 (11%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAH 58
                 ++ +     +A  A      + A   Y +++    Q       A  +       
Sbjct: 98  SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157

Query: 59  TKLEEYGSAIQDASKAIEI-----DPRY-PKGYYRRGAAYLAMGKF 98
            + +    A Q   +A +I     D     +   R           
Sbjct: 158 QQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Length = 261

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 21/131 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAI 68
            +E    A E +   KY +AI+ +            + +A +Y   A A+ + +EY  A 
Sbjct: 15  PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYL--ARAYYQNKEYLLAA 72

Query: 69  QDASKAIEIDPRYPK---GYYRRGAAY--------LAMGKFKEALKDFQQVKKLSPND-- 115
            +  + I+I    P+     Y R   Y        L     ++A++ FQ      PN   
Sbjct: 73  SEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132

Query: 116 -PDAAQKVKEC 125
             DA QK++E 
Sbjct: 133 VDDATQKIREL 143

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A} Length = 280

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 299 GDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS 358
           GDVHG + +L+ +         ++     GD V RG  S++V+  + +       ++ L 
Sbjct: 7   GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLG----DSVRLV 62

Query: 359 RGNHESKSMNKIYGFEGEVRSK-----LSETFVELFAEVFCCLPLAHVLNQKVFVVH 410
            GNH+   +    G             L     +         PL  +  +K  V+ 
Sbjct: 63  LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMA 119

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-------YYANRA 55
               + S     +     A+      +Y +A D+YS+ I+ +  N +       Y+  + 
Sbjct: 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206

Query: 56  FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-------KFKEALKDFQQV 108
                  +  +A +   +    DP +           L          +  E  K+F   
Sbjct: 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266

Query: 109 KKL 111
            +L
Sbjct: 267 MRL 269

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 20/149 (13%), Positives = 41/149 (27%), Gaps = 23/149 (15%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
           A+     A      K+ + A D + +A +   +          Y              +A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 68  IQDASKAIEIDPRYPKGYYRRGAA----------YLAMGKFKEALKDFQQVKKLSPNDPD 117
           +     AI+I   +      R  A             +  + +A+  ++   +    D  
Sbjct: 97  VDSLENAIQI---FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153

Query: 118 AAQKVKECEKA----VKKLKFEEAIAVPE 142
            A   K   K         ++ EA  +  
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYS 182

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 29/150 (19%)

Query: 14  AEELKALANE-AFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGS 66
           A     L          Y++AID Y  A E        + +   +   A       +Y  
Sbjct: 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176

Query: 67  AIQDASKAIEIDPRYP------KGYY-RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
           A    SK I+            K Y+ ++G   LA      A +  Q+ +   PN  D+ 
Sbjct: 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS- 235

Query: 120 QKVKECEKAVKKL----------KFEEAIA 139
              +E    +K L          +  E   
Sbjct: 236 ---RES-NFLKSLIDAVNEGDSEQLSEHCK 261

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 24  AFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIE---ID 78
              A++++  ID    A +   +            A   L  +  A +  ++A +    +
Sbjct: 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE 204

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
                  +    A  + G    A+   + ++   P +P  A 
Sbjct: 205 ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP-EPKVAA 245

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--------AVYYANRAF 56
            T            A+AN         + IDL+ Q ++              V Y N A 
Sbjct: 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY-NHAK 204

Query: 57  AHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A      Y  ++   +KAIEI           + YY+RG     +   +  ++D  +
Sbjct: 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 9/103 (8%), Positives = 24/103 (23%), Gaps = 13/103 (12%)

Query: 25  FRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
            +   Y   I    + +                   A  + +       I    + ++  
Sbjct: 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185

Query: 79  PRYPKG-------YYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
                         Y    A     +++E+L    +  ++S  
Sbjct: 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 18/103 (17%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASK 73
           L N      ++  A + Y + + L  Q       A    +    +T L++Y  AI    K
Sbjct: 55  LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

Query: 74  AIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ 107
            + I     +   R          G AY A+G   +A+   ++
Sbjct: 115 HLAI---AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSA 67
                 L N  +    +  A+  + Q + +       +   + Y+N   A+  L E+ +A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 68  IQDASKAIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ 107
            +   K + +     +   R          G  Y  +  +++A+    +
Sbjct: 69  SEYYKKTLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 22/113 (19%)

Query: 29  KYSQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77
           KY +A  L  +A+E+  +         A    N A       +Y        +A+EI   
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185

Query: 78  -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV------KKLSPNDPDAA 119
                DP   K      + YL  GKFK+A   ++++      ++    D +  
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 21/113 (18%)

Query: 29  KYSQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77
           +Y  A+ L  QA+E   +         A      A  +    +Y  A    + A+ I   
Sbjct: 42  RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101

Query: 78  -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV-----KKLSPNDPDAAQ 120
                 P            Y   GK+KEA    ++      K L  + PD A+
Sbjct: 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 15/104 (14%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQD 70
           LA+   +  K+ QA  LY + +           + +N   + +         +       
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

Query: 71  ASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108
                         P         GA Y   GKF+ A    +  
Sbjct: 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Length = 225

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 31/137 (22%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA-----FAHTKLEEYGSAI 68
             E+ A A +  +   + QAI                Y+ +      +A+ K  +   A 
Sbjct: 4   PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--YSQQVQLDLIYAYYKNADLPLAQ 61

Query: 69  QDASKAIEIDPRYPK---GYYRRGAAYLAMGKF------------------KEALKDFQQ 107
               + I ++P +P      Y RG   +A+                     + A  DF +
Sbjct: 62  AAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121

Query: 108 VKKLSPND---PDAAQK 121
           + +  PN     DA ++
Sbjct: 122 LVRGYPNSQYTTDATKR 138

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 22/113 (19%)

Query: 29  KYSQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77
           KY +A  L  +A+E+  +         A    N A       +         +A+EI   
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159

Query: 78  -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV------KKLSPNDPDAA 119
                DP   K      + YL  GK+++A   ++++      K+    + D  
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNK 212

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 15/95 (15%)

Query: 29  KYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID- 78
           KY  A  LY + +           N  N   + +        ++   +            
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243

Query: 79  -----PRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108
                P         GA Y   GK + A       
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 21/113 (18%)

Query: 29  KYSQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77
               A+ L  QA+E   +         A      A  +    +Y  A    + A+ I   
Sbjct: 16  PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75

Query: 78  -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV-----KKLSPNDPDAAQ 120
                 P            Y   GK+KEA    ++      K L    PD A+
Sbjct: 76  TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 11/117 (9%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-----YANRAFA 57
            ++        AE     A  A       +A  L   A+E       Y      +     
Sbjct: 3   EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 62

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPK------GYYRRGAAYLAMGKFKEALKDFQQV 108
                E   ++    +  ++  ++           ++     A G  + A +  ++ 
Sbjct: 63  LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	556
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	100.0
3h63_A	315	Serine/threonine-protein phosphatase 5; metalloenz	100.0
3icf_A	335	PPT, serine/threonine-protein phosphatase T; IRO m	100.0
3ll8_A	357	Serine/threonine-protein phosphatase 2B catalytic	100.0
3e7a_A	299	PP-1A, serine/threonine-protein phosphatase PP1-al	100.0
1aui_A	521	Calcineurin, serine/threonine phosphatase 2B; hydr	100.0
2ie4_C	309	PP2A-alpha;, serine/threonine-protein phosphatase	100.0
1fjm_A	330	Protein serine/threonine phosphatase-1 (alpha ISO	100.0
2z72_A	342	Protein-tyrosine-phosphatase; cold-active enzyme,	100.0
2dfj_A	280	Diadenosinetetraphosphatase; helices and strands m	99.97
2qjc_A	262	Diadenosine tetraphosphatase, putative; putative d	99.89
1g5b_A	221	Serine/threonine protein phosphatase; bacteriophag	99.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.72
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.71
3rqz_A	246	Metallophosphoesterase; PSI-biology, midwest cente	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.69
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.68
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.67
1nnw_A	252	Hypothetical protein; structural genomics, PSI, pr	99.67
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.56
3qfm_A	270	SAPH, putative uncharacterized protein; sandwich f	99.56
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.53
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.52
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.51
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.5
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.45
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.45
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.45
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.44
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.44
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.44
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.43
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.42
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.41
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.41
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.41
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.4
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.4
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.4
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.4
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.39
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.38
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.36
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.34
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.32
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.31
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.28
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.28
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.28
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.26
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.26
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.23
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.23
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.23
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.21
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.18
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.18
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.18
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.17
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.12
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
1s3l_A	190	Hypothetical protein MJ0936; phosphodiesterase, nu	99.11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.07
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.06
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.04
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.03
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.02
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.01
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.01
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.01
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.0
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.99
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.98
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.97
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.97
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.96
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.95
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.95
1uf3_A	228	Hypothetical protein TT1561; metallo-dependent pho	98.95
3ck2_A	176	Conserved uncharacterized protein (predicted phosp	98.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.94
2a22_A	215	Vacuolar protein sorting 29; alpha-beta-BETA-alpha	98.94
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.93
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.92
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.91
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.91
2kkn_A	178	Uncharacterized protein; protein phosphatase 2A ho	98.9
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.89
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.88
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.85
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.85
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.85
1z2w_A	192	Vacuolar protein sorting 29; VPS29, retromer, phos	98.84
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.83
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.83
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.83
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.78
1su1_A	208	Hypothetical protein YFCE; structural genomics, ph	98.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.73
1xm7_A	195	Hypothetical protein AQ_1665; structural genomics,	98.71
3ib7_A	330	ICC protein; metallophosphoesterase, alpha-beta fo	98.68
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.68
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.65
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.61
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.59
3d03_A	274	Phosphohydrolase; glycerophosphodiesterase, metall	98.59
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.55
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.5
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.5
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.48
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.34
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.34
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.28
3rl5_A	296	Metallophosphoesterase mpped2; alpha-beta fold, me	98.28
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.27
2yvt_A	260	Hypothetical protein AQ_1956; structural genomics,	98.24
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.24
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.14
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.11
2xmo_A	443	LMO2642 protein; phosphodiesterase, hydrolase; 1.7	98.05
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.03
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.01
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.75
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.63
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.6
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.58
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.56
3av0_A	386	DNA double-strand break repair protein MRE11; DNA	97.54
2nxf_A	322	Putative dimetal phosphatase; dinuclear metal cent	97.53
2q8u_A	336	Exonuclease, putative; structural genomics, joint	97.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.47
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.46
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.44
1ii7_A	333	MRE11 nuclease; RAD50, DNA double-strand break rep	97.42
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.39
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.21
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.9
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.89
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.85
3tho_B	379	Exonuclease, putative; adenosine triphosphate, bac	96.8
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.76
4fbk_A	472	DNA repair and telomere maintenance protein NBS1,	96.69
4fbw_A	417	DNA repair protein RAD32; DNA double-strand break	96.65
3t1i_A	431	Double-strand break repair protein MRE11A; DNA rep	96.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.41
1ute_A	313	Protein (II purple acid phosphatase); tartrate res	96.38
2qfp_A	424	Purple acid phosphatase; binuclear, Fe-Zn, hydrola	96.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.98
1xzw_A	426	Purple acid phosphatase; hydrolase; HET: NAG FUC M	95.74
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.15
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.01
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.96
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.83
3tgh_A	342	Glideosome-associated protein 50; phosphatase fold	94.55
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.4
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.39
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.38
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.34
3qfk_A	527	Uncharacterized protein; structural genomics, cent	93.89
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.92
1hp1_A	516	5'-nucleotidase; metallophosphatase, dinuclear, me	92.59
4h2g_A	546	5'-nucleotidase; dimer, hydrolase, phosphatase, ex	92.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.22
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.76
2z1a_A	552	5'-nucleotidase; metal-binding, nucleotide-binding	91.69
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.03
3ztv_A	579	NAD nucleotidase, NADN; hydrolase, NAD pyrophospha	90.08
1t71_A	281	Phosphatase, conserved HYPO; crystal, X-RAY crysta	89.96
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	88.99
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.63
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.52
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.49
3ive_A	509	Nucleotidase; structural genomics, PSI-2, protein	87.33
3jyf_A	339	2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- n	86.83
3gve_A	341	YFKN protein; alpha-beta-BETA-alpha sandwich, stru	86.49
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.12
2wdc_A	562	SOXB, sulfur oxidation protein SOXB; sulfur-sulfur	84.43
3c9f_A	557	5'-nucleotidase; 2',3'-cyclic phosphodiesterase, p	84.3
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	83.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.42

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=100.00  E-value=5.6e-90  Score=738.73  Aligned_cols=474  Identities=57%  Similarity=0.982  Sum_probs=435.5

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .+..+.++..+|..++..|+|++|++.|++|++++|+++.++.++|.+|.++|++++|+..|++|++++|+++.+++++|
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccccccccccCCCCCccchhH
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQ  169 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~  169 (556)
                      .+|..+|++++|++.|+++++++|++..++..++.+.......++++|++.+++.... ....                 
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~-----------------  143 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV-VDSL-----------------  143 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCST-TTCC-----------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh-Hhhh-----------------
Confidence            9999999999999999999999999999999999985555555578887776532110 0001                 


Q ss_pred             HHHHHhhhhhhhHhhhcccHHHHHHHHhHHHHHHHHHhhhcccCCCCCCccccccccccccCCCCCCcccCCCCCCHHHH
Q 008730          170 AAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFV  249 (556)
Q Consensus       170 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~it~~~i  249 (556)
                                                                            ....+.+.+++.++.+....++...+
T Consensus       144 ------------------------------------------------------~~~al~~~~~~~~~~~~~~~itl~~l  169 (477)
T 1wao_1          144 ------------------------------------------------------DIESMTIEDEYSGPKLEDGKVTISFM  169 (477)
T ss_dssp             ------------------------------------------------------TTSSCCCCTTCCSCCCGGGSCCHHHH
T ss_pred             ------------------------------------------------------hhhhccccccccccccccccccHHHH
Confidence                                                                  11224567778888887655899999


Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecc
Q 008730          250 KKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD  329 (556)
Q Consensus       250 ~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD  329 (556)
                      +++++.+++++.+++.++..+|.++.+++.++|++++++.|..++++|||||||++++|.++|+..|+++..++|||+||
T Consensus       170 ~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiHG~~~~l~~~l~~~~~~~~~~~~v~lGD  249 (477)
T 1wao_1          170 KELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGD  249 (477)
T ss_dssp             HHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCTTCHHHHHHHHHHHCCCBTTBCEEEESC
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCCCCHHHHHHHHHHcCCCCCcCeEEEecc
Confidence            99999999999999999999999999999999999999999899999999999999999999999999877778999999


Q ss_pred             cccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEE
Q 008730          330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVV  409 (556)
Q Consensus       330 ~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~v  409 (556)
                      |||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||.+++.++|+..+++.+.++|++||++++++++++||
T Consensus       250 ~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v  329 (477)
T 1wao_1          250 FVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIM  329 (477)
T ss_dssp             CSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCTTHHHHHHHHHTTSCSEEEETTTEEEC
T ss_pred             ccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcChHHHHHHHhhHHHHHHHHHHhccCCcEEEEcCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccc
Q 008730          410 HGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD  489 (556)
Q Consensus       410 HgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~  489 (556)
                      |||+++|...++++|+.+.|+.+++..+.++|+|||||....+|.++.||.|+.||++++++||+++|+++||||||+++
T Consensus       330 Hgg~~~~~~~~l~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~  409 (477)
T 1wao_1          330 HGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKA  409 (477)
T ss_dssp             SSCCCSSSCCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSCEECTTSSSEEECHHHHHHHHHHTTCCEEEECCSCCT
T ss_pred             CCCCCccccCCHHHHHhccCCCCCchhhhhhhhccCCCCccCCcCcCCCCCceeECHHHHHHHHHHcCCeEEEECCCCCc
Confidence            99997788889999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             cCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccchhhhh--hhc
Q 008730          490 EGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFL--RMF  555 (556)
Q Consensus       490 ~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  555 (556)
                      +||+++++|+|||||||||||+.++|+||||.|.+++++++|++|+++|+|.++||+|+++++  +||
T Consensus       410 ~g~~~~~~~~~~tvfsa~~y~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (477)
T 1wao_1          410 EGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYANTLLQLGMM  477 (477)
T ss_dssp             EEEEEEGGGTEEEEBCCTTTTSSSCCEEEEEEEETTEEEEEEEEECCCCCCSCCTTCSSCHHHHTTCC
T ss_pred             CCeEEecCCeEEEEeCCcccccCCCccEEEEEEECCCCeEEEEEEeCCCCCCCChhhhhhhhhhhccC
Confidence            999999999999999999999999999999999778899999999999999999999999988  765

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A

Probab=100.00  E-value=4.5e-84  Score=640.33  Aligned_cols=315  Identities=60%  Similarity=1.078  Sum_probs=306.7

Q ss_pred             CCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHH
Q 008730          234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE  313 (556)
Q Consensus       234 ~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~  313 (556)
                      |+||+|++..+|.+++++|++++++++.++++++..||.++.++|++||++++++.|.+++++||||||||+++|.++|+
T Consensus         1 y~gp~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~l~~p~~~ri~viGDIHG~~~~L~~ll~   80 (315)
T 3h63_A            1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE   80 (315)
T ss_dssp             CCSCCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEEecCCCceEEEEecCCCCHHHHHHHHH
Confidence            78999998669999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHh
Q 008730          314 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF  393 (556)
Q Consensus       314 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  393 (556)
                      ..++++.+++|||||||||||++|+||+.+|+++|..+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|
T Consensus        81 ~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~~e~~~k~~~~l~~~~~~~f  160 (315)
T 3h63_A           81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF  160 (315)
T ss_dssp             HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccccccccccccHHHHHHhhhHHHHHHHHHH
Confidence            99998877779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHH
Q 008730          394 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL  473 (556)
Q Consensus       394 ~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl  473 (556)
                      ++||++++++++++|||||+++|...++++|++++|+.+++.+++++|+|||||.+..+|.+++||+|+.||++++++||
T Consensus       161 ~~LPla~ii~~~il~vHGGl~sp~~~~l~~i~~i~R~~~~p~~g~~~dllWsDP~~~~g~~~s~RG~g~~fg~~~~~~fl  240 (315)
T 3h63_A          161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL  240 (315)
T ss_dssp             TTSCSEEEETTTEEECSSCCCSSTTCCHHHHHHCCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred             hcCCcEEEEcCCEEEeCCCCCCcccCCHHHHHhCcccccccccchhhhheecCCCCCCCcCcCCCCceEEECHHHHHHHH
Confidence            99999999999999999999888899999999999999999999999999999998889999999999999999999999


Q ss_pred             HHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccch
Q 008730          474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYA  548 (556)
Q Consensus       474 ~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (556)
                      ++||+++||||||++++||+++++++|||||||||||+.++|+||+|.|.+++++++|++|+++|+|.++||+||
T Consensus       241 ~~n~l~~iiR~Hq~~~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~~~~~~~~~~~~~~~f~~~~~~~~~p~~~~  315 (315)
T 3h63_A          241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYA  315 (315)
T ss_dssp             HHHTCSEEEECCSCCTTSEEEEGGGTEEEECCCTTGGGTSCCCEEEEEEETTEEEEEEEEECCCCCCSCCTTTTC
T ss_pred             HHcCCcEEEEeceeecCCeEEecCCeEEEEECCcccCCCCCccEEEEEEECCCCeEeeEEEecCCCCCCCCcCCC
Confidence            999999999999999999999999999999999999999999999999976789999999999999999999996

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-84  Score=645.69  Aligned_cols=320  Identities=48%  Similarity=0.862  Sum_probs=294.4

Q ss_pred             CCCCCcccCCCCCCHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCC--CCCcceEeccCCCCHHHH
Q 008730          232 PQYSGARIEGDVITLDFVKKMM-DDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIP--DGKHFTVCGDVHGQFYDL  308 (556)
Q Consensus       232 ~~~~g~~l~~~~it~~~i~~~i-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~i~vigDiHG~~~~l  308 (556)
                      .+|.||+|++  +|.+++++|+ +++++++.++++++..||.++.++|++||++++++.|  .+++++||||||||+++|
T Consensus         2 ~~y~g~~~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~~~~l~~p~~~~~ri~viGDIHG~~~~L   79 (335)
T 3icf_A            2 NAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDV   79 (335)
T ss_dssp             ------------CCHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCSSSTTCEEEEECCCTTCHHHH
T ss_pred             CCCCCCccCC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEecCCcccCceEEEEecCCCCHHHH
Confidence            4799999987  6999999999 9999999999999999999999999999999999999  889999999999999999


Q ss_pred             HHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHH
Q 008730          309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL  388 (556)
Q Consensus       309 ~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~  388 (556)
                      .++|+..|+++.+++|||||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||.+||.++|+..+|+.
T Consensus        80 ~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~~e~~~k~~~~l~~~  159 (335)
T 3icf_A           80 LNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNM  159 (335)
T ss_dssp             HHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccchHhHhhccHHHHHH
Confidence            99999999987777799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHH
Q 008730          389 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADV  468 (556)
Q Consensus       389 ~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~  468 (556)
                      +.+||++||++++++++++|||||+++|...++++|+.++|+.+++.+++++|+|||||.+..+|.+++||+|+.||+++
T Consensus       160 ~~~~f~~LPlaaii~~~il~vHGGl~sp~~~~ld~i~~i~R~~~~p~~g~~~dlLWSDP~~~~g~~~s~RG~g~~FG~~~  239 (335)
T 3icf_A          160 FAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDI  239 (335)
T ss_dssp             HHHHHTTSCSEEEETTTEEECSSCCCSCTTCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSEEECCCC--EEECHHH
T ss_pred             HHHHHhhcceeEEEcCcEEEecCCcCCCccCCHHHHHhCccccccccccchhhhhccCCCCcCCcccCCCCCceeeCHHH
Confidence            99999999999999999999999998889999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecC-----------CCceeEEEEecC
Q 008730          469 TKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP-----------TLKPNIVTFAAV  537 (556)
Q Consensus       469 ~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~-----------~~~~~~~~~~~~  537 (556)
                      +++||++|++++||||||++++||+++++++|||||||||||+.++|+||||.| ++           +++++|++|+++
T Consensus       240 ~~~fl~~n~l~~IiR~Hq~~~~Gy~~~~~~~liTvfSapnYc~~~~N~~a~~~i-~~~~~~~~~~~~~~~~~~~~~f~~~  318 (335)
T 3icf_A          240 TDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHV-VPGHGILQAGRNDDQNLIIETFEAV  318 (335)
T ss_dssp             HHHHHHHTTCSEEEECSSCCTEEEEEEGGGTEEEECCCTTGGGTSCCEEEEEEE-CTTCCCCBTTTBCCTTEEEEEECCC
T ss_pred             HHHHHHHCCCeEEEEcCceecCeEEEecCCcEEEEECCcccCCCCCCceEEEEE-ecccccccccccccCceeEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999 55           889999999999


Q ss_pred             CCCCCCcccchhhhhhh
Q 008730          538 PHPDVKPMAYANNFLRM  554 (556)
Q Consensus       538 ~~~~~~~~~~~~~~~~~  554 (556)
                      |+|.++||+||+++++|
T Consensus       319 ~~~~~~p~~y~~~~~~~  335 (335)
T 3icf_A          319 EHPDIKPMAYSNGGFGL  335 (335)
T ss_dssp             CCCSCCTTTTC------
T ss_pred             CCCCCCchhhcccccCC
Confidence            99999999999998775

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A

Probab=100.00  E-value=5.2e-75  Score=580.62  Aligned_cols=290  Identities=41%  Similarity=0.746  Sum_probs=274.5

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730          249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  328 (556)
Q Consensus       249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG  328 (556)
                      ++.+++++++++.++++++..||.++.++|++||++++++.|    ++||||||||+++|.++|+..+.++. ++|||||
T Consensus        30 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~p----i~ViGDIHG~~~dL~~ll~~~g~~~~-~~~vfLG  104 (357)
T 3ll8_A           30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFLG  104 (357)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-CCEEECS
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEEeccc----ceeeccCCCCHHHHHHHHHhcCCCCC-cEEEECC
Confidence            778999999999999999999999999999999999999876    99999999999999999999988764 5699999


Q ss_pred             ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEE
Q 008730          329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV  408 (556)
Q Consensus       329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~  408 (556)
                      ||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+||.++|+..+|+.+.+||++||++++++++++|
T Consensus       105 D~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~  184 (357)
T 3ll8_A          105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC  184 (357)
T ss_dssp             CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHHTSCSEEEETTTEEE
T ss_pred             CccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccCchhhhhhccchhHHHHHHHHHHhCCcceEEcccEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCC-------CC-cCCCCCccccCHHHHHHHHHHCCCCE
Q 008730          409 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------RG-PSKRGVGLSFGADVTKRFLQDNSLDL  480 (556)
Q Consensus       409 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~-------~~-~~~rg~g~~fg~~~~~~fl~~~~~~~  480 (556)
                      ||||+ +|...++++|++++|+.+++..+.++|+|||||.+..+       |. +++||+|+.||++++++||++||+++
T Consensus       185 vHGGl-sp~l~~ld~I~~i~R~~e~p~~g~~~DlLWSDP~~~~~~~~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~  263 (357)
T 3ll8_A          185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS  263 (357)
T ss_dssp             CSSCC-CTTCCSHHHHHTCCCSSCCCSSSHHHHHHHCEECTTTTSCSCCCSEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred             EecCc-CcccCCHHHHhhccccccCCccCchhHhhccCccccccccccccccccCCCCCCceEEChHHHHHHHHHCCCeE
Confidence            99999 99999999999999999999999999999999987644       33 57899999999999999999999999


Q ss_pred             EEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCccc
Q 008730          481 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMA  546 (556)
Q Consensus       481 iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (556)
                      ||||||++++||++++++      +||||||||||||.++|+||||.| +++. ..|.||+++|||.++|--
T Consensus       264 IiRaHq~~~~Gy~~~~~~~~~g~~~liTvFSApnYc~~~~N~~a~l~~-~~~~-~~~~~f~~~~hp~~~p~~  333 (357)
T 3ll8_A          264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENNV-MNIRQFNCSPHPYWLPNF  333 (357)
T ss_dssp             EEECCSCCTTSEEECCBCTTTSSBSEEEECCCTTGGGTSCCCEEEEEE-ETTE-EEEEEECCCCCCCCCGGG
T ss_pred             EEEeccccccceEEecCCcCCCCCcEEEEECCCccCCCCCccEEEEEE-ECCc-ceEEEecCCCCCCcCCCc
Confidence            999999999999999886      799999999999999999999999 4543 689999999999999854

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*

Probab=100.00  E-value=4.2e-74  Score=564.97  Aligned_cols=282  Identities=40%  Similarity=0.809  Sum_probs=268.1

Q ss_pred             HHHHHHHhhcCC--------CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC
Q 008730          249 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE  320 (556)
Q Consensus       249 i~~~i~~~~~~~--------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~  320 (556)
                      ++++|+++.+.+        .+++.++..||.++.++|.+||++++++.|    ++|||||||++++|.++|+..|+++.
T Consensus         8 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~   83 (299)
T 3e7a_A            8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE   83 (299)
T ss_dssp             HHHHHHHHHTTTTSCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred             HHHHHHHHHhccccCCCcccCCCHHHHHHHHHHHHHHHHhCCCeeecCCC----EEEEecCCCCHHHHHHHHHHhCCCCC
Confidence            667777764432        589999999999999999999999999876    99999999999999999999999865


Q ss_pred             CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH  400 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~  400 (556)
                       +.|||||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+||.++|+..+|+.+.++|++||+++
T Consensus        84 -~~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~e~~~ky~~~l~~~~~~~f~~LPlaa  162 (299)
T 3e7a_A           84 -SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA  162 (299)
T ss_dssp             -SCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred             -ccEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchHHHHHHhhHHHHHHHHHHHhhCCceE
Confidence             4599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC-CCCCCcCCCCCccccCHHHHHHHHHHCCCC
Q 008730          401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSFGADVTKRFLQDNSLD  479 (556)
Q Consensus       401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~-~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~  479 (556)
                      ++++++||||||+ +|...++++|++++|+.+++..++++|+|||||.. ..+|.+++||+|+.||++++++||++||++
T Consensus       163 ii~~~il~vHGGl-sp~~~~l~~i~~i~R~~~~p~~~~~~dllWsDP~~~~~~~~~~~RG~~~~fG~~~~~~fl~~n~l~  241 (299)
T 3e7a_A          163 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD  241 (299)
T ss_dssp             EETTTEEEESSCC-CTTCCCTHHHHTCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred             EECCeEEEEcCcc-CcccCCHHHHHhccCCCcCCcchhhhhhhcCCccccccCcccCCCCcceeeCHHHHHHHHHHCCCe
Confidence            9999999999999 99999999999999999999999999999999986 468999999999999999999999999999


Q ss_pred             EEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecC
Q 008730          480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV  537 (556)
Q Consensus       480 ~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~  537 (556)
                      +||||||++++||+++++++|||||||||||+.++|+||+|.| ++++.++|++|++.
T Consensus       242 ~IiR~Hq~v~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~l~~-~~~~~~~~~~~~~~  298 (299)
T 3e7a_A          242 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPA  298 (299)
T ss_dssp             EEEECCSCCTTSEEEETTTTEEEEBCCSSGGGTCCCCEEEEEE-CTTCCEEEEEECCC
T ss_pred             EEEEcCeeeecceEEecCCeEEEEECCcccCCCCCccEEEEEE-CCCCcEEEEEecCC
Confidence            9999999999999999999999999999999999999999999 99999999999874

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3

Probab=100.00  E-value=5.8e-71  Score=570.81  Aligned_cols=291  Identities=41%  Similarity=0.726  Sum_probs=274.1

Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeee
Q 008730          248 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN  327 (556)
Q Consensus       248 ~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vfl  327 (556)
                      .++.+++++++++.+++.++..||.++.++|.+||++++++.|    ++||||||||+++|.++|+..+.++ .++||||
T Consensus        42 ~~d~l~~~~~~~~~l~~~~i~~L~~~a~~il~~Ep~ll~l~~p----I~VIGDIHGq~~dL~~LL~~~g~p~-~d~yVFL  116 (521)
T 1aui_A           42 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPA-NTRYLFL  116 (521)
T ss_dssp             CHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTT-TCCEEEC
T ss_pred             CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEeeccc----eeeccCCCCCHHHHHHHHHhcCCCC-cceEEEc
Confidence            3778999999999999999999999999999999999999865    9999999999999999999888765 5679999


Q ss_pred             cccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEE
Q 008730          328 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF  407 (556)
Q Consensus       328 GD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~  407 (556)
                      |||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||..+|..+|+..+|+.+.+||++||++++++++++
T Consensus       117 GDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il  196 (521)
T 1aui_A          117 GDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFL  196 (521)
T ss_dssp             SCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEE
T ss_pred             CCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCccHHHHHhhhhHHHHHHHHHHHhCCceEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCC-------CCCcC-CCCCccccCHHHHHHHHHHCCCC
Q 008730          408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGPS-KRGVGLSFGADVTKRFLQDNSLD  479 (556)
Q Consensus       408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~~-~rg~g~~fg~~~~~~fl~~~~~~  479 (556)
                      |||||+ +|...++++|+.++|+.+++..+.++|+|||||....       +|.++ .||+|+.||++++++||++||++
T Consensus       197 ~VHGGl-sP~~~sld~I~~I~R~~e~p~~g~~~DLLWSDP~~~~g~~~~~~~f~~ns~RG~g~~FG~d~v~~FL~~n~l~  275 (521)
T 1aui_A          197 CVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLL  275 (521)
T ss_dssp             EESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTCS
T ss_pred             EECCCc-CcccCCHHHhhhccCCcCCCccchhhhheecCccccccccccCcceecccCCCcccccCHHHHHHHHHHcCCc
Confidence            999999 9999999999999999999999999999999998753       35444 79999999999999999999999


Q ss_pred             EEEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCccc
Q 008730          480 LVVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMA  546 (556)
Q Consensus       480 ~iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (556)
                      +||||||++++||++++++      +|||||||||||+.++|+||||.| +++ .++|.+|+++|+|.++|..
T Consensus       276 lIIRaHq~v~~Gy~~~~~~~~~g~~kliTVFSApNYc~~~~N~gAvl~i-~~~-~~~~~~f~~~~~p~~~P~~  346 (521)
T 1aui_A          276 SILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLPNF  346 (521)
T ss_dssp             EEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEE-ETT-EEEEEEECCCCCCCCCGGG
T ss_pred             EEEEccchhccceeeecCCcCCCCCeEEEEeCCcccCCCCCceEEEEEE-eCC-cceEEEecCCCCCCcCccc
Confidence            9999999999999999987      599999999999999999999999 555 5899999999999999954

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*

Probab=100.00  E-value=3.3e-70  Score=544.05  Aligned_cols=291  Identities=38%  Similarity=0.707  Sum_probs=275.8

Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCC
Q 008730          244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP  323 (556)
Q Consensus       244 it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~  323 (556)
                      .+...++++++++++++.+++.++..||.+|.++|.+||++++++.|    ++||||||||+++|.++|+..+.++. +.
T Consensus         5 ~~~~~~~~~i~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~~~~~----i~viGDIHG~~~~L~~ll~~~~~~~~-~~   79 (309)
T 2ie4_C            5 VFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPD-TN   79 (309)
T ss_dssp             -CHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHSCTTEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-SC
T ss_pred             hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEeccCC----EEEEecCCCCHHHHHHHHHHcCCCCC-CE
Confidence            56678999999999999999999999999999999999999999865    99999999999999999999998765 45


Q ss_pred             eeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhccccccccc
Q 008730          324 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVL  402 (556)
Q Consensus       324 ~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i  402 (556)
                      +||||||||||++|+||+.+|+++|..+|+++++||||||.+.++..|||.+||.++|+ ..+|+.+.++|++||+++++
T Consensus        80 ~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~yg~~~l~~~~~~~~~~LPl~~~i  159 (309)
T 2ie4_C           80 YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALV  159 (309)
T ss_dssp             EEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHHHHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred             EEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhhHHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999995 57999999999999999988


Q ss_pred             CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEE
Q 008730          403 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVV  482 (556)
Q Consensus       403 ~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~ii  482 (556)
                      +++++|||||+ +|...++++++.++|+.+.+..+.++|+|||||....+|.+++||.|+.||++++++||++||+++||
T Consensus       160 ~~~il~vHgGl-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsdp~~~~~~~~s~RG~g~~fG~~~~~~fl~~n~l~~ii  238 (309)
T 2ie4_C          160 DGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS  238 (309)
T ss_dssp             TTTEEECSSCC-CTTCCSHHHHHTSCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTCSEEE
T ss_pred             cCcEEEECCCC-CCcccCHHHHHhhcccccCChhHHHHHHhhCCCccccccccCCCCcccccCHHHHHHHHHHcCCeEEE
Confidence            99999999999 89999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             eeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCC
Q 008730          483 RSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD  541 (556)
Q Consensus       483 r~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~  541 (556)
                      ||||++++||+++++++|||||||||||+.++|+||+|.| +++++++|++|+++|+|.
T Consensus       239 r~Hq~~~~G~~~~~~~~~iTvfSa~ny~~~~~N~~a~l~i-~~~~~~~~~~~~~~~~~~  296 (309)
T 2ie4_C          239 RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL-DDTLKYSFLQFDPAPRRG  296 (309)
T ss_dssp             ECCSCCTEEEEEETTTTEEEECCCSSGGGTSCCEEEEEEE-CTTCCEEEEEECCCC---
T ss_pred             ecCcceeCCEEEecCCeEEEEECCcccccCCCCeEEEEEE-CCCCcEeEEEEeCCCCcc
Confidence            9999999999999999999999999999999999999999 889999999999998874

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3

Probab=100.00  E-value=3.4e-68  Score=532.34  Aligned_cols=285  Identities=39%  Similarity=0.791  Sum_probs=267.3

Q ss_pred             HHHHHHHhhc--------CCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC
Q 008730          249 VKKMMDDFKN--------QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE  320 (556)
Q Consensus       249 i~~~i~~~~~--------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~  320 (556)
                      ++++|+++.+        ...++++++..||.++.++|.+||++++++.|    ++||||||||+++|.++|+..|+++.
T Consensus         9 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~l~~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~   84 (330)
T 1fjm_A            9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE   84 (330)
T ss_dssp             HHHHHHHHHHTTTTCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred             HHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEeecCc----eEEecCCCCCHHHHHHHHHHhCCCCc
Confidence            5666666544        24699999999999999999999999999876    99999999999999999999999865


Q ss_pred             CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH  400 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~  400 (556)
                       ++|||||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.+||++||+++
T Consensus        85 -~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPl~~  163 (330)
T 1fjm_A           85 -SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA  163 (330)
T ss_dssp             -SCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred             -ceEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCceE
Confidence             5599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCC
Q 008730          401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLD  479 (556)
Q Consensus       401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~  479 (556)
                      +++++++|||||+ +|...++++++.+.|+.+.++.++++|+|||||... .+|.++.||.++.||++++.+||++++++
T Consensus       164 ~i~~~i~~vHgGl-~p~~~~l~qi~~i~r~~e~~~~g~~~dlLWsdp~~~~~~w~~~~rG~~~~fG~~~~~~fl~~~~l~  242 (330)
T 1fjm_A          164 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD  242 (330)
T ss_dssp             EETTTEEEESSCC-CTTCSCHHHHHHCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred             EEcCcEEEEccCC-CcccCCHHHHhhhhcCccCcccchHHHHHhcCCccccCCcCcccCCCceeeChHHHHHHHHhCCCc
Confidence            9999999999999 899999999999999999999999999999999865 68999999999999999999999999999


Q ss_pred             EEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730          480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP  540 (556)
Q Consensus       480 ~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~  540 (556)
                      +||||||++++||+++++++|||||||||||+.++|.||||.| ++++.++|++|++.+..
T Consensus       243 liir~Hq~v~~Gy~~~~~~~lvTvfSapnY~~~~~N~ga~l~i-~~~~~~~~~~~~~~~~~  302 (330)
T 1fjm_A          243 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPADKN  302 (330)
T ss_dssp             EEEECCSCCTTSEEEETTTTEEEEBCCTTCCSSSCCCEEEEEE-CTTCCEEEEEECCCC--
T ss_pred             eEecccccccCCeEEccCCeEEEEeCCcccccCCCCcEEEEEE-CCCCcEeEEEecCCccc
Confidence            9999999999999999999999999999999999999999999 89999999999987665

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A

Probab=100.00  E-value=1.9e-43  Score=359.85  Aligned_cols=231  Identities=20%  Similarity=0.271  Sum_probs=183.2

Q ss_pred             HhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCC-------CCCCeeeecccccCCCChHHHHHHHHhccc-
Q 008730          278 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS-------EENPYLFNGDFVDRGSFSVEVILTLFAFKC-  349 (556)
Q Consensus       278 ~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~-------~~~~~vflGD~vdrG~~s~e~l~~l~~lk~-  349 (556)
                      |..+|+++..    .++|+|||||||++++|.++|+..++++       ..+.+||+|||||||++|.||+.+|+.++. 
T Consensus        60 ~~~~~~~~~~----~~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~  135 (342)
T 2z72_A           60 KQIMPDTYLG----IKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQ  135 (342)
T ss_dssp             TSCCCSEECC----CCEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHH
T ss_pred             cccCcceecC----CCCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHH
Confidence            4556666654    3579999999999999999999988754       346799999999999999999999999985 


Q ss_pred             --cCCCeEEEecccccccccccc-------cCchhhHHhhhhHHHH---HHHHHHhcccccccccCCeEEEEecccccCC
Q 008730          350 --MCPSAIYLSRGNHESKSMNKI-------YGFEGEVRSKLSETFV---ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVD  417 (556)
Q Consensus       350 --~~p~~v~~lrGNHE~~~~~~~-------~g~~~~~~~~~~~~~~---~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~  417 (556)
                        .+|.++++||||||.+.++..       |++..++.......+|   ....+||+.||+++.++ +++|||||+ +|.
T Consensus       136 ~~~~~~~v~~v~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~-~~~~vHgGl-~p~  213 (342)
T 2z72_A          136 ARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKIN-DVLYMHGGI-SSE  213 (342)
T ss_dssp             HHHTTCEEEECCCHHHHHHHHTCCTTSCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEET-TEEEESSCC-CHH
T ss_pred             HhhCCCeEEEEecCCcHHHhhCcccccccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEEC-CEEEEECCC-Chh
Confidence              789999999999999888642       2222222221122333   24678999999999987 799999999 665


Q ss_pred             C----CChhhhhhcccCCC-----CCCccchhhhhcCCCCCCCCCCcCCCCC-ccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730          418 G----VKLSDIKTIDRFCE-----PPEEGLMCELLWSDPQPLPGRGPSKRGV-GLSFGADVTKRFLQDNSLDLVVRSHEV  487 (556)
Q Consensus       418 ~----~~~~~i~~~~r~~~-----~~~~~~~~~llw~dp~~~~~~~~~~rg~-g~~fg~~~~~~fl~~~~~~~iir~H~~  487 (556)
                      .    .++++++.+.|+..     ++..+..++++|+||..  .|   .||. +..||++++++||+.+++++|||||++
T Consensus       214 ~~~~~~~l~~i~~~~r~~~~~~~~~~~~~~~~~~lwsd~~~--~w---~R~~~~~~fg~~~~~~fl~~~~~~~IV~GHt~  288 (342)
T 2z72_A          214 WISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGP--TW---YRGYFSETFTEAELDTILQHFNVNHIVVGHTS  288 (342)
T ss_dssp             HHHTTCCHHHHHHHHHHHTTSCHHHHHHSHHHHHHHSTTST--TT---CCGGGSTTCCHHHHHHHHHHHTCSEEEECSSC
T ss_pred             hcccCCCHHHHHHHhhhhccccccccccCHHHHhccCCCCC--CC---cCCcccccCChHHHHHHHHHCCCcEEEECCCc
Confidence            4    38899988877521     12235678999999864  23   4776 578999999999999999999999999


Q ss_pred             cccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEec
Q 008730          488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEA  524 (556)
Q Consensus       488 ~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~  524 (556)
                      ++. +...+++++|||||+++|    +|.+++|.|++
T Consensus       289 ~~~-~~~~~~~~~i~Idsg~~~----gg~la~l~i~~  320 (342)
T 2z72_A          289 QER-VLGLFHNKVIAVDSSIKV----GKSGELLLLEN  320 (342)
T ss_dssp             CSS-CEEETTTTEEECCCCGGG----SSCCCEEEEET
T ss_pred             ccc-hhhhcCCCEEEEECCCCC----CCcEEEEEEEC
Confidence            865 667789999999999998    48899999943

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}

Probab=99.97  E-value=4e-33  Score=275.20  Aligned_cols=196  Identities=21%  Similarity=0.320  Sum_probs=159.7

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      ++|+|||||||++++|.++|+.++.++..+.+||+|||||||++|.||+.+|+.+    |.++++||||||.+.++..+|
T Consensus         1 M~i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l----~~~~~~v~GNHe~~~l~~~~g   76 (280)
T 2dfj_A            1 MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSL----GDSVRLVLGNHDLHLLAVFAG   76 (280)
T ss_dssp             -CEEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHT----GGGEEECCCHHHHHHHHHHTT
T ss_pred             CeEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhC----CCceEEEECCCcHHHHhHhcC
Confidence            3689999999999999999999998656678999999999999999999999887    358999999999999998888


Q ss_pred             chhhHHhh-----hhHHHHHHHHHHhcccccccccCC-eEEEEecccccCCCCChhhhhhcccCCC----CCCccchhhh
Q 008730          373 FEGEVRSK-----LSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE----PPEEGLMCEL  442 (556)
Q Consensus       373 ~~~~~~~~-----~~~~~~~~~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~----~~~~~~~~~l  442 (556)
                      |.......     +.......+.+||+.||+++.+++ +++|||||+ +|.. ++++++.+.|+.+    .++.+.++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi-~p~~-~l~~~~~~~r~~e~~l~~~~~~~~~~~  154 (280)
T 2dfj_A           77 ISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGI-TPQW-DLQTAKECARDVEAVLSSDSYPFFLDA  154 (280)
T ss_dssp             SSCCCGGGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCC-CTTC-CHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             CcccchhhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCC-CcCc-CHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence            76421111     112244567899999999988887 899999999 7765 7888888776642    3455568899


Q ss_pred             hcCCCCCCCCCCcCCCCCc-cccCHHH--HHHHHHHCC-CCEEEeec-cccccCceEec
Q 008730          443 LWSDPQPLPGRGPSKRGVG-LSFGADV--TKRFLQDNS-LDLVVRSH-EVKDEGYEIEH  496 (556)
Q Consensus       443 lw~dp~~~~~~~~~~rg~g-~~fg~~~--~~~fl~~~~-~~~iir~H-~~~~~G~~~~~  496 (556)
                      +|+||.  ..|.++.||.+ +.||.++  ..+||+.+| +++++|+| +.+++||...+
T Consensus       155 l~~d~~--~~w~~~~~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~~~~~~g~~~w~  211 (280)
T 2dfj_A          155 MYGDMP--NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWF  211 (280)
T ss_dssp             TTCSCC--CSCCTTCCHHHHHHHHHHHHHTCCEEETTBEEESSCCSCGGGCCSSCEEGG
T ss_pred             hcCCCC--CCcCCCCCCceeEEEeccHHHHHHHhhcCCcEeEEeccChhhcCccccchh
Confidence            999985  57889999998 7899888  467888888 78888888 77778877655

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}

Probab=99.89  E-value=7.5e-24  Score=207.61  Aligned_cols=220  Identities=18%  Similarity=0.227  Sum_probs=140.5

Q ss_pred             HHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEE
Q 008730          277 MLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIY  356 (556)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~  356 (556)
                      .+.++|++..+.    ++|+|||||||++++|.++++.++..+..+.+||+|||||||+++.||+.+|..+      .++
T Consensus         7 ~~~~~~~l~~~~----~~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~------~~~   76 (262)
T 2qjc_A            7 GYANVVTLPNVT----GRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL------GAY   76 (262)
T ss_dssp             -CCCEEECTTCC----SCEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHH------TCE
T ss_pred             ccCChhhhcCCC----CeEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHC------CCE
Confidence            344555555543    3699999999999999999999987655478999999999999999999998764      489


Q ss_pred             EecccccccccccccCchhh-HHhhhh---------HHHHHHHHHHhcccccccccC-CeEEEEecccccCCCC----Ch
Q 008730          357 LSRGNHESKSMNKIYGFEGE-VRSKLS---------ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGV----KL  421 (556)
Q Consensus       357 ~lrGNHE~~~~~~~~g~~~~-~~~~~~---------~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~~~~~~----~~  421 (556)
                      +|+||||.+.++..+++..+ |..+++         ..+.....+||+.||+++.++ .+++|||||+ +|...    +.
T Consensus        77 ~v~GNHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~-~p~~~~~~~~~  155 (262)
T 2qjc_A           77 SVLGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGL-HPQRPVDRQYE  155 (262)
T ss_dssp             ECCCHHHHHHHHHHHCC-------------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCC-CTTSCGGGCCH
T ss_pred             EEeCcChHHHHhhhcCCCccccccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCC-CCCCCcccCCH
Confidence            99999999988877666543 333332         233456779999999998885 5899999999 55432    12


Q ss_pred             hhhhhcc---cCCCCCCccchhhhhcCCCCCCC--CCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEec
Q 008730          422 SDIKTID---RFCEPPEEGLMCELLWSDPQPLP--GRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEH  496 (556)
Q Consensus       422 ~~i~~~~---r~~~~~~~~~~~~llw~dp~~~~--~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~  496 (556)
                      +++..+.   ++.+.+..+.  .++|+||....  .|..+.+                  +.+.||-||+.+. ++....
T Consensus       156 ~~l~~ir~~~~~~~~~~~G~--~~~~~d~~~~~~~~w~~~~~------------------g~~~vvfGHt~~~-~~~~~~  214 (262)
T 2qjc_A          156 DEVTTMRNLIEKEQEATGGV--TLTATEETNDGGKPWASMWR------------------GPETVVFGHDARR-GLQEQY  214 (262)
T ss_dssp             HHHHHCCEEEEC-------C--CEEEESCSTTCCEEGGGGCC------------------CSSEEEECCCGGG-CCBCTT
T ss_pred             HHHhhhhhcccccccCCCCc--cccccCCCCcCCCChhhccC------------------CCCEEEECCCccc-cccccC
Confidence            3333332   2111111222  36899984321  2322222                  5678899999864 443322


Q ss_pred             CCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730          497 DGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA  536 (556)
Q Consensus       497 ~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~  536 (556)
                      ++.++.|-+-.-|    ++.=+++.| +..   ++.+..+
T Consensus       215 ~~~~i~IDtG~~~----gG~Lt~l~l-~~~---~~~~~~~  246 (262)
T 2qjc_A          215 KPLAIGLDSRCVY----GGRLSAAVF-PGG---CIISVPG  246 (262)
T ss_dssp             TTTEEECCCBGGG----TSEEEEEEE-TTT---EEEEEEC
T ss_pred             CCCEEEeeCcccc----CCeeEEEEE-cCC---cEEEEec
Confidence            2266767665533    345567778 332   4555443

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3

Probab=99.86  E-value=1.3e-21  Score=187.07  Aligned_cols=168  Identities=21%  Similarity=0.254  Sum_probs=120.5

Q ss_pred             CeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccc
Q 008730          283 SLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH  362 (556)
Q Consensus       283 ~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNH  362 (556)
                      .+.+++.+..++|+|||||||++.+|.++++.++.++..+.+||+||+||||+++.|++.+|..      ..+++++|||
T Consensus         3 ~~~~~~~~~~~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~------~~~~~v~GNh   76 (221)
T 1g5b_A            3 YYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF------PWFRAVRGNH   76 (221)
T ss_dssp             SEEEEEGGGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS------TTEEECCCHH
T ss_pred             ceeecCCCCCceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc------CCEEEEccCc
Confidence            4556666667899999999999999999999998765567899999999999999999987643      3699999999


Q ss_pred             cccccccccCchh---------hHHhh---hhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhc
Q 008730          363 ESKSMNKIYGFEG---------EVRSK---LSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTI  427 (556)
Q Consensus       363 E~~~~~~~~g~~~---------~~~~~---~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~  427 (556)
                      |.+.++..+++..         .+...   ....+...+.+||+.||+.+.+   +.+++|||||+| +....      .
T Consensus        77 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~-~~~~~------~  149 (221)
T 1g5b_A           77 EQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYP-FDEYE------F  149 (221)
T ss_dssp             HHHHHHHHSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCC-SSBCC------T
T ss_pred             HHHHHhhhccCCcHHHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCC-hhhcc------c
Confidence            9887764432211         11001   1245677888999999999876   568999999983 32211      1


Q ss_pred             ccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHH-----HCCCCEEEeeccccc
Q 008730          428 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ-----DNSLDLVVRSHEVKD  489 (556)
Q Consensus       428 ~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~-----~~~~~~iir~H~~~~  489 (556)
                      .++.      ...+++|++|..                    .+..+     ..+.+.+|-||+.+.
T Consensus       150 ~~~~------~~~~~lw~~~~~--------------------~~~~~~~~~~~~~~~~vv~GHth~~  190 (221)
T 1g5b_A          150 GKPV------DHQQVIWNRERI--------------------SNSQNGIVKEIKGADTFIFGHTPAV  190 (221)
T ss_dssp             TCCC------CHHHHHHCCHHH--------------------HHHHTTCCCCCBTSSEEEECSSCCS
T ss_pred             CCCc------cccccccCchhh--------------------hhhccccCCcccCCCEEEECCCCCc
Confidence            1111      135788987421                    11122     346788999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.82  E-value=3.6e-19  Score=154.37  Aligned_cols=122  Identities=30%  Similarity=0.544  Sum_probs=115.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      ....-+|+.++++.++|+.+++.|+|++|+..|+++++++|.++.+|.++|.++.++|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      |+++|.+|..+|++++|+..|+++++++|++..++..++.++
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.73  E-value=4e-17  Score=145.80  Aligned_cols=125  Identities=13%  Similarity=0.081  Sum_probs=115.8

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ...+|+.+..++.+|.+|+..|+|++|+++|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+++
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            34567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           87 RRGAAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~-~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++|.+|...|++++|... +++|++++|+++.++..++.++...|+
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999887765 599999999999999999888766553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.72  E-value=1.8e-16  Score=141.76  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=108.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      .....+|+.+.+++.+|..++..|+|++|+..|+++++++|.++.+|.++|.++..+|+|++|+.+|+++++++|+++.+
T Consensus        27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP  106 (151)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      |+++|.+|..+|++++|+..|++++++.|+.+
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999865

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.1e-16  Score=135.94  Aligned_cols=118  Identities=27%  Similarity=0.433  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      |..+..+..+|..++..|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 008730           91 AYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKA  128 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~  128 (556)
                      ++..+|++++|+..|+++++++      |++..++..+..+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999      9999999988887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.71  E-value=8.1e-17  Score=179.35  Aligned_cols=133  Identities=24%  Similarity=0.302  Sum_probs=126.8

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ...|+.++++.++|.++..+|++++|+.+|++|++++|+++.++.++|.+|.++|++++|+..|++|++++|+++.+|++
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|.+|..+|++++|++.|++|++++|++..++.+++.++..+|+  +++|++.++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~  135 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYR  135 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999999988  788877776

>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0

Probab=99.70  E-value=1.4e-16  Score=154.74  Aligned_cols=190  Identities=15%  Similarity=0.116  Sum_probs=130.7

Q ss_pred             CCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccccc
Q 008730          292 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY  371 (556)
Q Consensus       292 ~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~  371 (556)
                      .++|.+||||||++..|.++++.++   ..+.+|++||++|+|+++.+++.+|..++     .+++++||||........
T Consensus         3 ~mri~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~   74 (246)
T 3rqz_A            3 AMRILIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLA-----PNISVIGNHDWACIGRLS   74 (246)
T ss_dssp             CCCEEEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHC-----SSEECCCHHHHHHTCCCC
T ss_pred             CcEEEEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcC-----CCEEEeCchHHHHhccCC
Confidence            5789999999999999999999887   34679999999999999999999998885     278999999988765432


Q ss_pred             C--c---hhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCC
Q 008730          372 G--F---EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSD  446 (556)
Q Consensus       372 g--~---~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~d  446 (556)
                      .  +   ...........+.....+|+..+|.....+ +++++||++.++.                          |  
T Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~-~i~~~Hg~p~~~~--------------------------~--  125 (246)
T 3rqz_A           75 LDEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDG-DWTVVHGSPRHPI--------------------------W--  125 (246)
T ss_dssp             CC--CGGGGCHHHHHHHHCCHHHHHHHHHCCSEEEET-TEEEESSCSSSTT--------------------------T--
T ss_pred             ccccCHHHHHHHHHHHHHcCHHHHHHHHhCCcEEEEC-CEEEEECCcCCcc--------------------------c--
Confidence            2  1   111111123345556678999999987755 8999999861110                          0  


Q ss_pred             CCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE--------------------ecCCeEEEEecC
Q 008730          447 PQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI--------------------EHDGKLITVFSA  506 (556)
Q Consensus       447 p~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~--------------------~~~~~~itvfSa  506 (556)
                                    ++.+....+.+.++..+.+++|-||+-.+..+..                    ..+..++..=|.
T Consensus       126 --------------~~~~~~~~~~~~l~~~~~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGSV  191 (246)
T 3rqz_A          126 --------------EYIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAV  191 (246)
T ss_dssp             --------------CCCCSHHHHHHHGGGCCSSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECCS
T ss_pred             --------------cccCChHHHHHHHhccCCCEEEECCcCcccEEEecccccccccccccccceeecCCCeEEEECCcc
Confidence                          0112345667778888999999999986544431                    113445555554


Q ss_pred             CCCCCCCCCeEEEEEEecCCCceeEEE
Q 008730          507 PNYCDQMGNKGAFIRFEAPTLKPNIVT  533 (556)
Q Consensus       507 ~~y~~~~~n~~a~~~~~~~~~~~~~~~  533 (556)
                      -.--+ ..+.+++++++.++..++|..
T Consensus       192 G~Prd-g~p~A~Y~i~d~~~~~v~~~r  217 (246)
T 3rqz_A          192 GQPRD-GDPRASYAIFEPDAQRVTFHR  217 (246)
T ss_dssp             SCCCS-SCCSEEEEEEEGGGTEEEEEE
T ss_pred             CCCCC-cCCcceEEEEECCCCEEEEEE
Confidence            22111 356788999965554444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=8.4e-16  Score=135.53  Aligned_cols=128  Identities=19%  Similarity=0.260  Sum_probs=119.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      .....+|+.+..++.+|..++..|+|++|+..|+++++.+|.++.+|..+|.++..+|++++|+..|+++++++|+++.+
T Consensus         9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A            9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      ++.+|.+|..+|++++|+..|+++++++|+++........+...++..
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988877777776666553

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.69  E-value=7.3e-16  Score=137.33  Aligned_cols=124  Identities=17%  Similarity=0.257  Sum_probs=115.5

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ..+|..+..++.+|..++..|+|++|+..|+++++.+|.++.+|+++|.++..+|++++|+..|+++++++|+++.++++
T Consensus        15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +|.+|..+|++++|+..|+++++++|+++........+...+..
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999988776666666555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.68  E-value=1.7e-15  Score=136.74  Aligned_cols=119  Identities=31%  Similarity=0.436  Sum_probs=112.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ..+.+..+..++.+|..++..|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+.+|+++++++|+++.+|+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   83 (164)
T 3sz7_A            4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS   83 (164)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      ++|.+|..+|++++|+.+|+++++++|++..++...+..
T Consensus        84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            999999999999999999999999999998865555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=2.7e-16  Score=149.35  Aligned_cols=130  Identities=19%  Similarity=0.272  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      |.++..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++.+.|++++|+..|+++++++|+++.+++.+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAM-----------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~-----------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++..+           |++++|+..|+++++++|+++.++..++.++..+|+  +++|+..++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~  142 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLK  142 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence            99999           999999999999999999999999999999998888  677777665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.68  E-value=7.9e-16  Score=133.26  Aligned_cols=115  Identities=27%  Similarity=0.387  Sum_probs=104.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh------
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP------   82 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------   82 (556)
                      ..++.+.++.++|..+++.|+|++|+.+|++|++++|+++.+|.++|.+|..+|+|++|+..|+++++++|++.      
T Consensus         3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999988763      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730           83 -KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (556)
Q Consensus        83 -~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  124 (556)
                       .+++++|.++..+|++++|++.|+++++..|+ ++....+..
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence             58999999999999999999999999999885 555544443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=1.9e-15  Score=138.76  Aligned_cols=129  Identities=16%  Similarity=0.204  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      +++..|+++|.++...|+|++|+..|+++++++|+++.++..+|.+|.++|++++|+..+++++..+|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +...+++++|+..+++++++.|++..++..++.++..+++  +++|++.++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~  131 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYE  131 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHH
Confidence            9999999999999999999999999999999999999888  788887776

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=1e-15  Score=145.43  Aligned_cols=132  Identities=19%  Similarity=0.206  Sum_probs=126.3

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-----------EEYGSAIQDASKAIE   76 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~al~   76 (556)
                      ..+|+.+.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...           |++++|+..|+++++
T Consensus        33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            457888999999999999999999999999999999999999999999999999           999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        77 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...|+  +++|+..++
T Consensus       113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~--~~~A~~~~~  175 (217)
T 2pl2_A          113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR--LDEALAQYA  175 (217)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999 999999999999999988  677777665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.67  E-value=9.1e-16  Score=138.30  Aligned_cols=124  Identities=24%  Similarity=0.349  Sum_probs=114.3

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCHHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------------------NSQNAVYYANRAFAHTKLEEYGSAIQ   69 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~------------------~p~~~~a~~~lg~~~~~~g~~~~A~~   69 (556)
                      ++....+..+..+|..++..|+|++|+..|++++++                  +|.+..++.++|.||.++|+|++|+.
T Consensus         5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~   84 (162)
T 3rkv_A            5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE   84 (162)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            455677899999999999999999999999999999                  77778999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhh
Q 008730           70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-DAAQKVKECEKAVKK  131 (556)
Q Consensus        70 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~  131 (556)
                      +++++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++ .+...++.+...++.
T Consensus        85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 678888888776655

>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A

Probab=99.67  E-value=9.4e-16  Score=149.31  Aligned_cols=198  Identities=15%  Similarity=0.085  Sum_probs=126.5

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcC---CCC-CCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNG---LPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN  368 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~---~~~-~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~  368 (556)
                      ++|++||||||++..|.++++.+.   ..+ ..+.+|++||++|+|+.+.+++.+|..+....  .+++++||||.....
T Consensus         2 m~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~--~~~~v~GNhD~~~~~   79 (252)
T 1nnw_A            2 VYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKE--NVKIIRGKYDQIIAM   79 (252)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHS--CEEEECCHHHHHHHH
T ss_pred             cEEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhc--CeeEEecchHHHhhc
Confidence            468999999999999999988765   321 34679999999999999999999998876322  499999999987654


Q ss_pred             cccCch-----------h---hHHhhhhHHHHHHHHHHhccccccccc--CC-eEEEEecccccCCCCChhhhhhcccCC
Q 008730          369 KIYGFE-----------G---EVRSKLSETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGLFSVDGVKLSDIKTIDRFC  431 (556)
Q Consensus       369 ~~~g~~-----------~---~~~~~~~~~~~~~~~~~~~~lP~~~~i--~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~  431 (556)
                      ....+.           .   .........+.....+|+..+|....+  ++ +++++||++..+.              
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p~~~~--------------  145 (252)
T 1nnw_A           80 SDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPF--------------  145 (252)
T ss_dssp             SCTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCSSCTT--------------
T ss_pred             cccccCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCCCCCc--------------
Confidence            221110           0   000111234455567899999987654  33 7999999751110              


Q ss_pred             CCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHC-CCCEEEeeccccccCceEecCCeE-EEEecCCCC
Q 008730          432 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLDLVVRSHEVKDEGYEIEHDGKL-ITVFSAPNY  509 (556)
Q Consensus       432 ~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~-~~~~iir~H~~~~~G~~~~~~~~~-itvfSa~~y  509 (556)
                              .+.+|.+                 -+.+.+.++++.. +++++|-||...+....  .++.+ +..=| ..+
T Consensus       146 --------~~~~~~~-----------------~~~~~l~~~~~~~~~~~~vi~GHtH~~~~~~--~~~~~~in~Gs-~~~  197 (252)
T 1nnw_A          146 --------DGEVLAE-----------------QPTSYYEAIMRPVKDYEMLIVASPMYPVDAM--TRYGRVVCPGS-VGF  197 (252)
T ss_dssp             --------TCCCCSS-----------------CCHHHHHHHHGGGTTSSEEEESTTCSEEEEE--ETTEEEEEECC-SSS
T ss_pred             --------ccccCCC-----------------CCHHHHHHHHhcCCCCCEEEECCccccceEe--cCCeEEEECCC-ccC
Confidence                    0001111                 1235667777777 99999999998765443  34533 22222 221


Q ss_pred             CCCCCCeEEEEEEecCCCceeEEEE
Q 008730          510 CDQMGNKGAFIRFEAPTLKPNIVTF  534 (556)
Q Consensus       510 ~~~~~n~~a~~~~~~~~~~~~~~~~  534 (556)
                      .-.....+++++++.++.++++..+
T Consensus       198 ~~~~~~~~~y~il~~~~~~v~~~~v  222 (252)
T 1nnw_A          198 PPGKEHKATFALVDVDTLKPKFIEV  222 (252)
T ss_dssp             CSSSSCCEEEEEEETTTCCEEEEEE
T ss_pred             CCCCCCcceEEEEECCCCeEEEEEe
Confidence            1111235788888656666666555

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.66  E-value=2.9e-16  Score=139.72  Aligned_cols=119  Identities=20%  Similarity=0.222  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAV-----YYANRAFAHTKLEEYGSAIQDASKAIEI--   77 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~l--   77 (556)
                      ..+..+.++|+.++..|+|++|+..|++|++++|+       +..     +|.++|.++.++|+|++|+.+|++|+++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            46788999999999999999999999999999999       544     9999999999999999999999999999  


Q ss_pred             -----CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           78 -----DPRYPKGY----YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        78 -----~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                           +|++..+|    +++|.++..+|++++|+.+|+++++++|++......+..+.....
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                 99999999    999999999999999999999999999999877777766655443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.65  E-value=2.5e-15  Score=141.69  Aligned_cols=130  Identities=17%  Similarity=0.157  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCHHHHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----------------RAFAHTKLEEYGSAIQDASKAIE   76 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~----------------lg~~~~~~g~~~~A~~~~~~al~   76 (556)
                      .+..+...|..++..|++++|+..|+++++.+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        77 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...+....+++...+.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  148 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK  148 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998877655555554433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.64  E-value=4.9e-15  Score=127.35  Aligned_cols=126  Identities=32%  Similarity=0.482  Sum_probs=120.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      ......+..+.+++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A            7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      ++.+|.++..+|++++|+..|+++++++|++..++..++.++...+
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999987665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.63  E-value=1.7e-14  Score=123.02  Aligned_cols=126  Identities=36%  Similarity=0.578  Sum_probs=119.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      ..+.++..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +.+|.++...|++++|+..|+++++++|++..++..++.++..+++
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999988776

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=3.7e-16  Score=139.49  Aligned_cols=114  Identities=17%  Similarity=0.086  Sum_probs=106.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 008730           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF   98 (556)
Q Consensus        19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~   98 (556)
                      .+|..+...|++++|++.+++++..+|+++.+++.+|.+|.+.|+|++|+..|+++++++|+++.+|+.+|.+|..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            47888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      ++|+..|+++++++|+++.++..++.++...++.
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999999999999988873

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=1.6e-15  Score=156.72  Aligned_cols=134  Identities=15%  Similarity=0.107  Sum_probs=126.8

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      ...+|..+.++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            356789999999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++|.++..+|++++|+..|+++++++|++..++..++.++..+++  +++|+..+.
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl~~~~  224 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD  224 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988  456665554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=1.5e-14  Score=129.47  Aligned_cols=135  Identities=53%  Similarity=0.854  Sum_probs=124.1

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ......+..+..+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..++++++++|.++.+++.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|.++..+|++++|+..|+++++++|++..++..++.+.......++++|++..+
T Consensus        87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  141 (166)
T 1a17_A           87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  141 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999977777755555555888877765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=3e-15  Score=166.73  Aligned_cols=124  Identities=23%  Similarity=0.289  Sum_probs=120.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+|+.+.++.++|.++.+.|++++|+.+|++|++++|+++.+|+++|.++.++|++++|++.|++|++++|+++.+|+++
T Consensus        38 l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~L  117 (723)
T 4gyw_A           38 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL  117 (723)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      |.+|..+|++++|++.|++|++++|+++.++.+++.++..+++.
T Consensus       118 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A          118 ASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            99999999999999999999999999999999999999998884

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=8.8e-15  Score=134.22  Aligned_cols=132  Identities=20%  Similarity=0.278  Sum_probs=126.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+|+.+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...++++.|+..+.++++++|+++.++..+
T Consensus        34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l  113 (184)
T 3vtx_A           34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL  113 (184)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.+|..+|++++|++.|+++++++|+++.++..+|.++..+|+  +++|++.++
T Consensus       114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~  165 (184)
T 3vtx_A          114 GLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL--RDEAVKYFK  165 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            9999999999999999999999999999999999999999988  677777665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=1.8e-14  Score=146.44  Aligned_cols=124  Identities=30%  Similarity=0.472  Sum_probs=119.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASK   73 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~   73 (556)
                      ..|..+..+..+|..++..|+|++|+..|+++++++|.+               ..++.++|.+|.++|++++|+.+|++
T Consensus       142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            357788999999999999999999999999999999999               69999999999999999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        74 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      +++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++.
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988874

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.61  E-value=1.3e-14  Score=125.99  Aligned_cols=123  Identities=29%  Similarity=0.428  Sum_probs=113.9

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..+..+..++.+|..++..|+|++|+..|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVKK  131 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~~~~~~~~  131 (556)
                      |.++..+|++++|+..|+++++++|+     +..+...+..+......
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998     77888888877665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=1e-14  Score=138.83  Aligned_cols=128  Identities=23%  Similarity=0.258  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      .+..++.+|..++..|+|++|+..|+++++++| .+..+++++|.++..+|++++|+..|+++++.+|+++.+++.+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            458999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDP-------DAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~-------~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |..+|++++|+..|+++++++|+++       .++..++.++...++  +++|++.+.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~  141 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYK  141 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHH
Confidence            9999999999999999999999999       557777777777766  788877766

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.59  E-value=6.3e-14  Score=117.30  Aligned_cols=115  Identities=31%  Similarity=0.544  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      +.+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      +..+|++++|+..|+++++.+|+++.++..++.+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999999999999998888765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=1.1e-14  Score=124.98  Aligned_cols=104  Identities=12%  Similarity=0.056  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+|.
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                      ..|++++|+..|+++++++|++..
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999998754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=1.1e-14  Score=150.51  Aligned_cols=122  Identities=9%  Similarity=0.028  Sum_probs=118.0

Q ss_pred             CChhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~-~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      .+|+.+.+|..+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++++|++..+|++
T Consensus       126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~  205 (382)
T 2h6f_A          126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  205 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence            467889999999999999997 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +|.++..+|++++|+.+|+++++++|++..++..++.++..++
T Consensus       206 lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998843

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.58  E-value=3.1e-15  Score=133.72  Aligned_cols=113  Identities=12%  Similarity=-0.046  Sum_probs=104.3

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008730           28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ  107 (556)
Q Consensus        28 g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  107 (556)
                      +++-.+-..++++++++|+++.+++.+|.++.+.|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++
T Consensus        16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            33444556688889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       108 al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++++|+++.++..++.++..+|+  +++|+..++
T Consensus        96 al~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~  128 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQCQLRLKA--PLKAKECFE  128 (151)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999998  677777665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.58  E-value=6.1e-14  Score=130.67  Aligned_cols=123  Identities=28%  Similarity=0.401  Sum_probs=117.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCHHHHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------VYYANRAFAHTKLEEYGSAIQDAS   72 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----------------~a~~~lg~~~~~~g~~~~A~~~~~   72 (556)
                      +.+..+..+..+|..++..|+|++|+..|++++++.|.++                .++.++|.++..+|++++|+.+++
T Consensus        33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3456788999999999999999999999999999999987                899999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        73 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=8.1e-14  Score=122.13  Aligned_cols=119  Identities=34%  Similarity=0.502  Sum_probs=113.2

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      ...+..+..++.+|..++..|++++|+..|+++++.+|++   ..++.++|.++...|++++|+..++++++.+|+++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            4456789999999999999999999999999999999998   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      ++.+|.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.56  E-value=1.7e-13  Score=115.75  Aligned_cols=117  Identities=32%  Similarity=0.536  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.+++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      ...|++++|+..|+++++.+|+++.++..++.++...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999887654

>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*

Probab=99.56  E-value=1.2e-14  Score=142.77  Aligned_cols=113  Identities=17%  Similarity=0.104  Sum_probs=85.6

Q ss_pred             cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccccc--
Q 008730          294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY--  371 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~--  371 (556)
                      +|.|||||||++..|.++++.+... ..+.+|++||+|++|+++.||+.+|..++     .+++++||||...+....  
T Consensus        13 ~i~~iSDiHg~~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~~~   86 (270)
T 3qfm_A           13 KIALLSDIHGNTTALEAVLADARQL-GVDEYWLLGDILMPGTGRRRILDLLDQLP-----ITARVLGNWEDSLWHGVRKE   86 (270)
T ss_dssp             EEEEECCCTTCHHHHHHHHHHHHHT-TCCEEEECSCCSSSSSCSHHHHHHHHTSC-----EEEECCCHHHHHHHHHHTTC
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCHHHHHHHHHccC-----CEEEEcCChHHHHHHhhccc
Confidence            6999999999999999999987654 34679999999999999999999998873     588999999998776432  


Q ss_pred             -CchhhHHh------hh-hHHHHHHHHHHhccccccccc--C-CeEEEEecc
Q 008730          372 -GFEGEVRS------KL-SETFVELFAEVFCCLPLAHVL--N-QKVFVVHGG  412 (556)
Q Consensus       372 -g~~~~~~~------~~-~~~~~~~~~~~~~~lP~~~~i--~-~~~~~vHgG  412 (556)
                       +|......      .| ...+.....+|++.||....+  + .+++++||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~  138 (270)
T 3qfm_A           87 LDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHL  138 (270)
T ss_dssp             SCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSB
T ss_pred             cCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECC
Confidence             33322111      11 123334567899999998755  3 489999964

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.55  E-value=5.2e-14  Score=149.26  Aligned_cols=124  Identities=30%  Similarity=0.470  Sum_probs=115.4

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASK   73 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~   73 (556)
                      ..|..+..+..+|..+++.|+|++|+..|++|++++|.+               ..+|.++|.||.++|+|++|+.+|++
T Consensus       263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            356788999999999999999999999999999999998               79999999999999999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        74 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      |++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++.
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.54  E-value=3.9e-14  Score=157.73  Aligned_cols=134  Identities=15%  Similarity=-0.009  Sum_probs=127.3

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +.+|+.+.++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.++++
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            45688889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE  144 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~  144 (556)
                      +|.++..+|++++ ++.|++|++++|++..++.+++.++..+|+  +++|++.+++.
T Consensus       507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~a  560 (681)
T 2pzi_A          507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLDEV  560 (681)
T ss_dssp             HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHTS
T ss_pred             HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHhh
Confidence            9999999999999 999999999999999999999999999988  78888877643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=1e-13  Score=131.85  Aligned_cols=131  Identities=17%  Similarity=0.188  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------HH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KG   84 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~   84 (556)
                      .....++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++       .+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  119 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY  119 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            44577888999999999999999999999999999999999999999999999999999999999999998       67


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.+|.++..+|++++|+..|+++++++|+  +..++..++.++...++...+++.....
T Consensus       120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  179 (228)
T 4i17_A          120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLAS  179 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred             HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999  9999999999999988865677655543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.53  E-value=2.3e-13  Score=116.07  Aligned_cols=119  Identities=29%  Similarity=0.456  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PKG   84 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~   84 (556)
                      ..+..+..+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999998877       899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++.+|.++...|++++|+..|+++++..| ++.....++.+...+++
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 68888889888877665

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=2.3e-14  Score=123.84  Aligned_cols=102  Identities=21%  Similarity=0.246  Sum_probs=95.0

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        39 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      ++..++|+.+.++.++|.++++.|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          119 AQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +..+|.++..+++  +++|++.++
T Consensus        84 ~~~lg~~~~~~~~--~~~A~~~~~  105 (126)
T 4gco_A           84 YIRKAACLVAMRE--WSKAQRAYE  105 (126)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHCCC--HHHHHHHHH
Confidence            9999999999988  688877766

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.52  E-value=2.3e-13  Score=116.68  Aligned_cols=115  Identities=18%  Similarity=0.156  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR   88 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l   88 (556)
                      +.++.+|..++..|+|++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|+++++.+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4578899999999999999999999999999998   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      |.++..+|++++|+..|+++++..|+++.+......+....
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR  123 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999998877766655443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.51  E-value=1.9e-13  Score=140.64  Aligned_cols=122  Identities=22%  Similarity=0.462  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE----------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~----------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      ...+..+..+|..++..|+|++|+..|+++++                .+|.+..+|.++|.+|.++|+|++|+.+|+++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            45577899999999999999999999999999                78888999999999999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        75 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      ++++|+++.+++++|.+|..+|++++|+..|++|++++|++..++..++.++..+++.
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888873

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=9.9e-13  Score=119.13  Aligned_cols=132  Identities=17%  Similarity=0.222  Sum_probs=104.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..|..+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.+++.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  116 (186)
T 3as5_A           37 ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL  116 (186)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH
Confidence            34455677888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++...|++++|+..++++++..|++..++..++.++...++  +++|+....
T Consensus       117 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  168 (186)
T 3as5_A          117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR--HEEALPHFK  168 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            8888888888888888888888888888888888888777776  556655444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.50  E-value=1.1e-13  Score=122.94  Aligned_cols=102  Identities=20%  Similarity=0.221  Sum_probs=93.8

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        25 ~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      -+.+.|++|+..|+++++++|+++++|.++|.++.+++++          ++|+..|++|++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3557899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           95 MG-----------KFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        95 ~g-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      +|           ++++|+++|++|++++|++......+..+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            85           899999999999999999988777766553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.49  E-value=8.3e-13  Score=112.72  Aligned_cols=126  Identities=29%  Similarity=0.482  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      .++..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .|++++|+..++++++..|.+..++..++.++...++  +++|+..+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  127 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQ  127 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence            9999999999999999999999999999999988777  566655443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.49  E-value=2.6e-13  Score=132.04  Aligned_cols=133  Identities=21%  Similarity=0.191  Sum_probs=120.5

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---   81 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   81 (556)
                      ..++..+..++.+|..++..|+|++|+..|+++++.+|.+   +.+++.+|.++.++|++++|+..|+++++.+|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            3456778999999999999999999999999999999999   9999999999999999999999999999998854   


Q ss_pred             hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHhhhhHHH
Q 008730           82 PKGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAA-----------------QKVKECEKAVKKLKFEE  136 (556)
Q Consensus        82 ~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~l~p~~~~~~-----------------~~l~~~~~~~~~~~~~~  136 (556)
                      +.+++.+|.++..        +|++++|+..|+++++..|+++.+.                 ..++.++...|+  +++
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~  166 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEA  166 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHH
Confidence            6789999999999        9999999999999999999987666                 677888888777  778


Q ss_pred             HhcCCC
Q 008730          137 AIAVPE  142 (556)
Q Consensus       137 Ai~~~~  142 (556)
                      |+..+.
T Consensus       167 A~~~~~  172 (261)
T 3qky_A          167 AAVTYE  172 (261)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877766

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=6.3e-13  Score=124.53  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..+..++.+|..++..|++++|+..|++++  +| ++.++.++|.++...|++++|+..|+++++++|+++.+++++|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            456778999999999999999999999996  44 789999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDP----------------DAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |..+|++++|+..|++++++.|++.                .++..++.++..+++  +++|+..+.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  145 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA  145 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHH
Confidence            9999999999999999999998877                999999999999887  677766655

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=7.7e-13  Score=124.50  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=98.8

Q ss_pred             CChhHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 008730            9 SSVSRAEELKA----------------LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS   72 (556)
Q Consensus         9 ~~~~~a~~~~~----------------lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   72 (556)
                      .+|+.+.+++.                +|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+
T Consensus        33 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  112 (208)
T 3urz_A           33 LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE  112 (208)
T ss_dssp             HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35667777777                99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           73 KAIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        73 ~al~l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++++++|+++.+++++|.+|+..|+  .+.+...+++++...|. ..++..++.++...++
T Consensus       113 ~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~  172 (208)
T 3urz_A          113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR  172 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC
Confidence            9999999999999999999977654  34566666666532221 2345556666666555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.47  E-value=3.2e-13  Score=147.05  Aligned_cols=133  Identities=12%  Similarity=0.093  Sum_probs=123.5

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      +.+|..+..+..+|..+...|++++|++.|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.++++
T Consensus        17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   96 (568)
T 2vsy_A           17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW   96 (568)
T ss_dssp             ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hhhhHHHHhcCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~---~~~~~~~Ai~~~~  142 (556)
                      +|.+|..+|++++|++.|+++++++|++..++..++.++..+   ++  +++|++.+.
T Consensus        97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~  152 (568)
T 2vsy_A           97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVR  152 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHH
Confidence            999999999999999999999999999999999999999998   66  677766655

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=1.7e-13  Score=145.94  Aligned_cols=133  Identities=13%  Similarity=0.035  Sum_probs=115.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~-~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ..+..+..++.+|..+...|+| ++|+.+|+++++++|+++.+|..+|.+|...|++++|+.+|+++++++|+ ..++.+
T Consensus        97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~  175 (474)
T 4abn_A           97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN  175 (474)
T ss_dssp             TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred             cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence            4566788899999999999999 99999999999999999999999999999999999999999999999988 788999


Q ss_pred             HHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------hhhhHHHHhcCCCCC
Q 008730           88 RGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--------KKLKFEEAIAVPESE  144 (556)
Q Consensus        88 lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~--------~~~~~~~Ai~~~~~~  144 (556)
                      +|.+|..+         |++++|+..|+++++++|++..++..++.++...        ++  +++|+..+.++
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~--~~~A~~~~~~a  247 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI--SQQALSAYAQA  247 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch--HHHHHHHHHHH
Confidence            99999998         9999999999999999999999999999888877        55  66776666533

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=1.8e-13  Score=113.42  Aligned_cols=106  Identities=22%  Similarity=0.240  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR   88 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l   88 (556)
                      |..+..+..+|..+...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++.+|.  +..+++.+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4556778999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 008730           89 GAAYLAM-GKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        89 g~~~~~~-g~~~~A~~~~~~al~l~p~~~  116 (556)
                      |.++..+ |++++|++++++++...|.++
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999 999999999999999998763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.45  E-value=5.9e-13  Score=141.75  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=123.6

Q ss_pred             ChhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------hCHHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL--------EEYGSAIQDAS   72 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~---------g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~--------g~~~~A~~~~~   72 (556)
                      +|+ +.++..+|.++...         |++++|+..|+++++++|+++.+|.++|.+|..+        |++++|+..|+
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~  245 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA  245 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence            344 58899999999999         9999999999999999999999999999999999        99999999999


Q ss_pred             HHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           73 KAIEIDP---RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        73 ~al~l~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++++++|   +++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.++..+++  +++|++...
T Consensus       246 ~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~--~~eAi~~~~  316 (474)
T 4abn_A          246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR--LTSLLESKG  316 (474)
T ss_dssp             HHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--HHHHHHHTT
T ss_pred             HHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHHHHhc
Confidence            9999999   9999999999999999999999999999999999999999999999999987  788887655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.45  E-value=2.4e-12  Score=122.51  Aligned_cols=132  Identities=22%  Similarity=0.226  Sum_probs=110.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..|..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus        52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++...|++++|+..++++++..|++..++..++.++...++  +++|+..+.
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~  183 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFA  183 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            8888888888888888888888888888888888888887776  456655544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.45  E-value=9.8e-13  Score=135.33  Aligned_cols=131  Identities=17%  Similarity=0.146  Sum_probs=111.8

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|+.+..+..+|..+...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++.++|+++.++..+|
T Consensus       165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  244 (388)
T 1w3b_A          165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence            56677888888888888899999988888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|++++|+..|+++++++|+++.++..++.++...|+  +++|+..+.
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~  295 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYN  295 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            888888888888888888888888888888888888888777  566665554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=8.6e-13  Score=130.42  Aligned_cols=104  Identities=33%  Similarity=0.500  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..+..+..+|..++..|+|++|+..|+++++.+|.++.++.++|.+|..+|++++|+..|+++++++|+++.+++++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      |..+|++++|+..|+++++++|++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999876

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.45  E-value=1.5e-12  Score=118.51  Aligned_cols=116  Identities=19%  Similarity=0.224  Sum_probs=100.1

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhhCH--HHHHHHHHHHHHhCCCChHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA-HTKLEEY--GSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~--~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      .|..+..+..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...|++  ++|+..++++++.+|+++.+++
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  119 (177)
T 2e2e_A           40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM  119 (177)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence            456678889999999999999999999999999999999999999998 7788888  9999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      .+|.++...|++++|+..|+++++++|++......+..+
T Consensus       120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            999999999999999999999999999886655444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.44  E-value=3.4e-12  Score=123.91  Aligned_cols=130  Identities=20%  Similarity=0.151  Sum_probs=118.3

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|++++|+..|++++++.|++......++.+ ...++  +++|+..+.
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~  168 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD--EKQAKEVLK  168 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC--HHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC--HHHHHHHHH
Confidence            999999999999999999999999998777666654 33344  677766554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.44  E-value=1.4e-12  Score=129.80  Aligned_cols=139  Identities=14%  Similarity=0.151  Sum_probs=127.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|..+..+..+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  247 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA  247 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhhhHHHHhcCCCCCcccccc
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD  150 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~  150 (556)
                      .++..+|++++|+..|++++++.|+            +..++..++.++..+|+  +++|.............
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR--PDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTTCCSHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhcch
Confidence            9999999999999999999999999            78999999999999988  68887777755444333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.44  E-value=2.3e-12  Score=120.76  Aligned_cols=132  Identities=19%  Similarity=0.142  Sum_probs=123.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAM-GKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~-g~~~~A~~~~~~al~--l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++... |++++|+..++++++  ..|.+..++..++.++...++  +++|+..+.
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~  137 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLK  137 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999 999999999999999  667778999999999988887  677776665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=1.8e-13  Score=116.16  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=90.2

Q ss_pred             HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730           26 RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      ..|++++|+..|++++++   +|.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 008730          103 KDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus       103 ~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      ..|+++++..|+++.+......+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999988765544443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=1.8e-12  Score=117.34  Aligned_cols=130  Identities=17%  Similarity=0.153  Sum_probs=123.1

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      ...+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++...|++++|+..++++++..|++..++..++.++...++  +++|+..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~  134 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFK  134 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHH
Confidence            99999999999999999999999999999999999988887  677777665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.44  E-value=2.2e-13  Score=121.16  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        32 ~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                      .+-..|+++++++|++..+++.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++++
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          112 SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       112 ~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|+++.++..++.++..+|+  +++|+..+.
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~  113 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGE--LAEAESGLF  113 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999988  677776665

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=8.6e-13  Score=135.76  Aligned_cols=131  Identities=22%  Similarity=0.314  Sum_probs=117.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|+.+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+|
T Consensus       199 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  278 (388)
T 1w3b_A          199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA  278 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|++++|+..|++++++.|++..++..++.++...|+  +++|+..+.
T Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~  329 (388)
T 1w3b_A          279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN--IEEAVRLYR  329 (388)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999999999999998888777  566665554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.44  E-value=1.3e-12  Score=133.15  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34556788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC--------------------------------------------C--CHHHHHHHHHH
Q 008730           92 YLAMGKFKEALKDFQQVKKLSP--------------------------------------------N--DPDAAQKVKEC  125 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p--------------------------------------------~--~~~~~~~l~~~  125 (556)
                      |..+|++++|+..|++++++.|                                            +  ++.++..++.+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            8888887777777777766544                                            3  67788888888


Q ss_pred             HHHHhhhhHHHHhcCCC
Q 008730          126 EKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       126 ~~~~~~~~~~~Ai~~~~  142 (556)
                      +...++  +++|+..+.
T Consensus       223 ~~~~g~--~~~A~~~~~  237 (365)
T 4eqf_A          223 FHLSGE--FNRAIDAFN  237 (365)
T ss_dssp             HHHHTC--HHHHHHHHH
T ss_pred             HHHCCC--HHHHHHHHH
Confidence            887777  566666555

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=1.2e-12  Score=127.29  Aligned_cols=131  Identities=19%  Similarity=0.167  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------hhCHHHHHHHHHHHHHhCCC
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTK--------LEEYGSAIQDASKAIEIDPR   80 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~--------~g~~~~A~~~~~~al~l~p~   80 (556)
                      ..+.+++.+|.+++..|+|++|+..|+++++.+|++   +.+++.+|.++..        .|++++|+..|+++++.+|+
T Consensus        50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            348899999999999999999999999999998854   6789999999999        99999999999999999999


Q ss_pred             ChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhh--------h
Q 008730           81 YPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKK--------L  132 (556)
Q Consensus        81 ~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~~~~~~~~--------~  132 (556)
                      ++.+.                 +.+|.+|...|++++|+..|+++++..|+   .+.++..++.++..+|.        .
T Consensus       130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~  209 (261)
T 3qky_A          130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE  209 (261)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence            87666                 89999999999999999999999999998   46789999999988733        2


Q ss_pred             hHHHHhcCCC
Q 008730          133 KFEEAIAVPE  142 (556)
Q Consensus       133 ~~~~Ai~~~~  142 (556)
                      ++++|+..+.
T Consensus       210 ~~~~A~~~~~  219 (261)
T 3qky_A          210 RYRRAVELYE  219 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            3677766655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.3e-12  Score=123.54  Aligned_cols=128  Identities=19%  Similarity=0.283  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--------------------------LNSQNAVYYANRAFAHTKLEEYGS   66 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~--------------------------~~p~~~~a~~~lg~~~~~~g~~~~   66 (556)
                      .+..+..+|..+...|++++|+..|+++++                          .+|.++.++..+|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            378999999999999999999999999999                          667778899999999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        67 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...++  +++|+..+.
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  231 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--YASALETLD  231 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888  677766554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.43  E-value=8.7e-13  Score=128.19  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG   89 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg   89 (556)
                      .+.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++ .|.+    ..+++.+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999999 4444    44599999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      .++...|++++|+..|+++++++|++..++..++.++...++  +++|+..+.+
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~  133 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEK  133 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHGG
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHHH
Confidence            999999999999999999999999999999999999999888  7888888773

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=2.7e-12  Score=122.22  Aligned_cols=131  Identities=20%  Similarity=0.239  Sum_probs=122.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|.....+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  166 (243)
T 2q7f_A           87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG  166 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...|++++|+..|+++++..|++..++..++.++...++  +++|+..+.
T Consensus       167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  217 (243)
T 2q7f_A          167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN--REKALEMLD  217 (243)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence            999999999999999999999999999999999999998887  455555444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.42  E-value=1.1e-12  Score=133.28  Aligned_cols=120  Identities=13%  Similarity=0.263  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHhhh
Q 008730           93 LAMGKFKEALKDFQQVKKLSPND-----------PDAAQKVKECEKAVKKL  132 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~-----------~~~~~~l~~~~~~~~~~  132 (556)
                      ..+|++++|+..|++++++.|++           ..++..++.++..+|+.
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            99999999999999999999888           88999999999998884

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.42  E-value=1.8e-13  Score=139.22  Aligned_cols=121  Identities=25%  Similarity=0.402  Sum_probs=97.4

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDAS   72 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~~A~~~~~   72 (556)
                      .+..+..+..+|..++..|+|++|+..|++++++.|.+.                 .++.++|.+|.++|+|++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            466789999999999999999999999999999999887                 489999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        73 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      ++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.....
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~  312 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK  312 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998855443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.41  E-value=2.9e-12  Score=123.11  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=123.7

Q ss_pred             CCChhH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            8 NSSVSR-AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         8 ~~~~~~-a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ..+|.. +..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.+++
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            345665 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|.++...|++++|++.|+++++  ..|.+..++..++.++...++  +++|+..+.
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  165 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFE  165 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999  888899999999999988887  677776665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.41  E-value=5.1e-12  Score=118.43  Aligned_cols=131  Identities=14%  Similarity=0.070  Sum_probs=122.4

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHH--hCCCChHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIE--IDPRYPKGYY   86 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~--l~p~~~~~~~   86 (556)
                      .|..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++... |++++|+..++++++  .+|.+..+++
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  117 (225)
T 2vq2_A           38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL  117 (225)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence            4556788999999999999999999999999999999999999999999999 999999999999999  6677789999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|.++...|++++|+..++++++..|++..++..++.++...++  +++|+..+.
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  171 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFK  171 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999999998887  677777665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.41  E-value=4.5e-12  Score=121.70  Aligned_cols=131  Identities=21%  Similarity=0.172  Sum_probs=123.2

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCCCChHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--IDPRYPKGYYR   87 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~   87 (556)
                      .|..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++  .+|.++.+++.
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  146 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN  146 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence            4566789999999999999999999999999999999999999999999999999999999999999  88999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|.++...|++++|+..|+++++..|.+..++..++.++...++  +++|+..+.
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  199 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYD  199 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999998887  677766655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.40  E-value=3.7e-12  Score=126.91  Aligned_cols=131  Identities=16%  Similarity=0.039  Sum_probs=107.8

Q ss_pred             ChhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .|..+..+..+|..+...| ++++|+..|+++++.+|.++.+|..+|.++...|++++|+..++++++.+|++..+++.+
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  165 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI  165 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            4556677888888888888 888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++...|++++|+..++++++..|++..++..++.++...++  +++|+..+.
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~  217 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFL  217 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            8888888888888888888888888888888888888887776  566655554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.40  E-value=3.6e-12  Score=126.95  Aligned_cols=130  Identities=17%  Similarity=0.083  Sum_probs=81.1

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|..+..+..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  200 (330)
T 3hym_B          121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG  200 (330)
T ss_dssp             CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34445566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLS---------PNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~---------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      .++...|++++|+..++++++..         |....++..++.++...++  +++|+..+
T Consensus       201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~  259 (330)
T 3hym_B          201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK--YAEALDYH  259 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC--HHHHHHHH
Confidence            66666666666666666666654         4445566666666655555  34444433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.40  E-value=8.4e-13  Score=130.89  Aligned_cols=130  Identities=18%  Similarity=0.067  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      |.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..+++++..+|+....+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            55678899999999999999999999999999999999999999999999999999999999999999987777777888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+...++.++|+..|+++++.+|++..++..++.++...|+  +++|+..+.
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~  243 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLF  243 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            88889999999999999999999999999999999988887  677777665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.40  E-value=2.6e-12  Score=130.81  Aligned_cols=120  Identities=14%  Similarity=0.282  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+..+|..+...|++++|+..|+++++.+|.++.+|.++|.++...|++++|+..|+++++++|+++.+++.+|.+|
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhh
Q 008730           93 LAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~l~~~~~~~~~~  132 (556)
                      ..+|++++|+..|++++++.|+            +..++..++.++..+++.
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence            7777777777777777777765            245667777777777664

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=4.7e-12  Score=121.39  Aligned_cols=117  Identities=27%  Similarity=0.435  Sum_probs=112.3

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ..|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKEC  125 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~  125 (556)
                      |.++..+|++++|+..|+++++++      |++..++..++.+
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999      9988888877765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.39  E-value=3.3e-13  Score=123.30  Aligned_cols=129  Identities=14%  Similarity=0.006  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      +...+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            344566889999999999999999999999999999999999999999999999999999999999999 8877766665


Q ss_pred             HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYL-AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +.. ..++..+|+..++++++++|+++.++..++.++...|+  +++|+..+.
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~  132 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLW  132 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            533 33444568999999999999999999999999998887  677777665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=2.4e-12  Score=122.59  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH---HHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYY   86 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~   86 (556)
                      .+..++.+|..++..|+|++|+..|+++++..|.+   ..+++.+|.++.++|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            46789999999999999999999999999999987   478999999999999999999999999999999864   899


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH-----------------HHHHHHHHHhh
Q 008730           87 RRGAAYLA------------------MGKFKEALKDFQQVKKLSPNDPDAAQ-----------------KVKECEKAVKK  131 (556)
Q Consensus        87 ~lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~~~~~-----------------~l~~~~~~~~~  131 (556)
                      .+|.++..                  .|++++|+..|+++++..|+++.+..                 .++.++...++
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999987                  57899999999999999999976542                 34445555554


Q ss_pred             hhHHHHhcCCC
Q 008730          132 LKFEEAIAVPE  142 (556)
Q Consensus       132 ~~~~~Ai~~~~  142 (556)
                        +++|+..++
T Consensus       163 --~~~A~~~~~  171 (225)
T 2yhc_A          163 --WVAVVNRVE  171 (225)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              666666555

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.38  E-value=1.6e-12  Score=118.34  Aligned_cols=120  Identities=12%  Similarity=0.105  Sum_probs=107.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCH-
Q 008730           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YLAMGKF-   98 (556)
Q Consensus        21 g~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~~~g~~-   98 (556)
                      +..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.+ +...|++ 
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999 8899999 


Q ss_pred             -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           99 -KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        99 -~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                       ++|+..|+++++.+|++..++..++.++...++  +++|+..+.
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~  139 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQ  139 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence             999999999999999999999999999999887  677776665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.38  E-value=4.3e-13  Score=149.33  Aligned_cols=120  Identities=10%  Similarity=-0.054  Sum_probs=113.8

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|+.+.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++.++|++++ +..|++|++++|+++.+++++|
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      .+|..+|++++|++.|+++++++|++..++..++.++...+
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999875544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.38  E-value=3.1e-12  Score=121.71  Aligned_cols=130  Identities=15%  Similarity=0.141  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------hhCHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTK------------------LEEYGSAIQ   69 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~---a~~~lg~~~~~------------------~g~~~~A~~   69 (556)
                      +....+++.+|.+++..|+|++|+..|+++++.+|+++.   +++.+|.++..                  .|++++|+.
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            445678999999999999999999999999999999864   89999999987                  578999999


Q ss_pred             HHHHHHHhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH
Q 008730           70 DASKAIEIDPRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAV  129 (556)
Q Consensus        70 ~~~~al~l~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~  129 (556)
                      .|+++++.+|+++.++                 +.+|.+|...|++++|+..|+++++..|+++   .++..++.++..+
T Consensus       118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  197 (225)
T 2yhc_A          118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM  197 (225)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence            9999999999987654                 6789999999999999999999999999986   6799999999999


Q ss_pred             hhhhHHHHhcCCC
Q 008730          130 KKLKFEEAIAVPE  142 (556)
Q Consensus       130 ~~~~~~~Ai~~~~  142 (556)
                      |+  +++|++..+
T Consensus       198 g~--~~~A~~~~~  208 (225)
T 2yhc_A          198 QM--NAQAEKVAK  208 (225)
T ss_dssp             TC--HHHHHHHHH
T ss_pred             CC--cHHHHHHHH
Confidence            98  577766554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.38  E-value=3.6e-12  Score=128.26  Aligned_cols=128  Identities=22%  Similarity=0.336  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      +++.++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHHhhhhHHHHhcCCC
Q 008730           93 LAMGKFKEALKDFQQVKKLSP---NDPDAAQKV------------KECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p---~~~~~~~~l------------~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ...|++++|+..|+++++.+|   ++..++..+            +.++...++  +++|+..+.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~  144 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD--YTAAITFLD  144 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence            999999999999999999999   888888877            455555555  677766665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.37  E-value=1.6e-12  Score=114.33  Aligned_cols=106  Identities=13%  Similarity=0.146  Sum_probs=97.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        35 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      ..|+++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          115 DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.++..++.++..+|+  +++|+..+.
T Consensus        85 ~~~~~~~lg~~~~~~g~--~~~A~~~~~  110 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGD--LDGAESGFY  110 (142)
T ss_dssp             CTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999988  677777665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.36  E-value=1.5e-11  Score=124.85  Aligned_cols=100  Identities=10%  Similarity=0.134  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      +..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888887


Q ss_pred             HcCCHHHHHHHHHHHHHhCC
Q 008730           94 AMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p  113 (556)
                      ..|++++|+..|++++++.|
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~  163 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTP  163 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTST
T ss_pred             HcCCHHHHHHHHHHHHHhCc
Confidence            77777777666666555444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.35  E-value=1.2e-11  Score=124.52  Aligned_cols=132  Identities=13%  Similarity=0.068  Sum_probs=123.3

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---CChHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGY   85 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~   85 (556)
                      ..|..+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|   +++.++
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  111 (359)
T 3ieg_A           32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE  111 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999   888888


Q ss_pred             HHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           86 YRR------------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        86 ~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..+            |.++...|++++|+..++++++..|+++.++..++.++...++  +++|+..+.
T Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~  178 (359)
T 3ieg_A          112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLK  178 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            887            7999999999999999999999999999999999999999887  677776655

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.35  E-value=1.6e-11  Score=114.90  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----------
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----------   82 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----------   82 (556)
                      .+..+..+|.++...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..|++++++.|++.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            4679999999999999999999999999999999999999999999999999999999999999988877          


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           83 ------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        83 ------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                            .+++++|.++..+|++++|+..|++++++.|++..
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                  99999999999999999999999999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.34  E-value=2e-11  Score=127.69  Aligned_cols=134  Identities=22%  Similarity=0.332  Sum_probs=119.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      -..+|..+..+..+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++
T Consensus        19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   98 (450)
T 2y4t_A           19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL   98 (450)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH------------HHHHHHhhhhHHHHhcCCC
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVK------------ECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~------------~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|.+|..+|++++|+..|+++++++|++.   .++..++            .++...++  +++|+..+.
T Consensus        99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~  167 (450)
T 2y4t_A           99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--YTAAIAFLD  167 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999999988   7776664            33555554  667766655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.32  E-value=6.2e-12  Score=114.74  Aligned_cols=124  Identities=14%  Similarity=0.105  Sum_probs=110.4

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ..+|+.+.++..+|.++...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++.+|+++.+++
T Consensus        34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~  112 (176)
T 2r5s_A           34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC  112 (176)
T ss_dssp             HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence            45688899999999999999999999999999999999 8887776665533 334555689999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhh
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKL  132 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~  132 (556)
                      .+|.++...|++++|+..|+++++.+|+.  ..++..++.++..+|+.
T Consensus       113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A          113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999976  56999999999998873

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.31  E-value=1e-11  Score=123.08  Aligned_cols=124  Identities=11%  Similarity=-0.019  Sum_probs=117.2

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+|+.+.++..+|.++...|++++|+..|+++++.+|+....+...+..+...++.++|+..++++++.+|+++.+++.+
T Consensus       146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l  225 (287)
T 3qou_A          146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL  225 (287)
T ss_dssp             HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH
Confidence            46778899999999999999999999999999999998777788888889999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKL  132 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~  132 (556)
                      |.+|...|++++|+..|+++++.+|++  ..++..++.++..+|+.
T Consensus       226 a~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          226 ALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            999999999999999999999999998  88999999999998873

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=8.5e-12  Score=123.81  Aligned_cols=129  Identities=16%  Similarity=0.050  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCC---
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRY---   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~---   81 (556)
                      ..+.++.++|.++...|++++|+.+|++|+++.|..      +.++.++|.+|... |++++|+.+|++|+++.|..   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            346778888888888888888888888888877643      45777888888885 88888888888888877654   


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                         ..++.++|.++..+|++++|+..|++++++.|++..       ++..++.++..+|+  +++|+..+.
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~  223 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ  223 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence               456778888888888888888888888888776543       45667777777666  566666555

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=2.2e-11  Score=118.20  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      |..+..+..+|.++...|++++|+..|+++++ .|.+    ..++..+|.++...|++++|+..|+++++.+|.++.++.
T Consensus        34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  112 (272)
T 3u4t_A           34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG  112 (272)
T ss_dssp             CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence            34445666666666677777777777776666 3322    334666676666677777777777777777666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK-ECEK  127 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~-~~~~  127 (556)
                      .+|.++..+|++++|+..|+++++++|.++.++..++ .++.
T Consensus       113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A          113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            7777777777777777777777666666666666666 4443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.30  E-value=3.8e-11  Score=119.24  Aligned_cols=121  Identities=10%  Similarity=0.011  Sum_probs=99.7

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA--FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg--~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      |....++..+|.++...|++++|+..|+++++.+|++.......+  ..+...|++++|+..|+++++.+|+++.+++.+
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            455678888888888889999999999999988888764433333  223334788999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      |.++..+|++++|+..|+++++++|+++.++.+++.++...|+
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999988888776

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.29  E-value=5.3e-11  Score=101.29  Aligned_cols=106  Identities=32%  Similarity=0.540  Sum_probs=100.8

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|.....+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.+++.+|
T Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  110 (136)
T 2fo7_A           31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG  110 (136)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34557789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      .++...|++++|+..++++++.+|++
T Consensus       111 ~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          111 NAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999863

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.28  E-value=4.5e-11  Score=100.56  Aligned_cols=101  Identities=11%  Similarity=0.199  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730           31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (556)
Q Consensus        31 ~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  110 (556)
                      ++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC--CHHHHHHHHHHHHHHhh
Q 008730          111 LSPN--DPDAAQKVKECEKAVKK  131 (556)
Q Consensus       111 l~p~--~~~~~~~l~~~~~~~~~  131 (556)
                      +.|.  +..+...+......+++
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhcc
Confidence            9884  45666666666666655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.28  E-value=2.8e-12  Score=106.58  Aligned_cols=94  Identities=31%  Similarity=0.386  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------hHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYY   86 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~   86 (556)
                      .+..+..+|..++..|+|++|+..|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            355666666666666666666666666666666666666666666666666666666666666666666      66666


Q ss_pred             HHHHHHHHcCCHHHHHHHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQ  106 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~  106 (556)
                      .+|.++..+|++++|+..++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            66666666665555554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.28  E-value=3e-11  Score=103.31  Aligned_cols=96  Identities=22%  Similarity=0.254  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (556)
Q Consensus        45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  124 (556)
                      |..+..+..+|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHhcCCC
Q 008730          125 CEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       125 ~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++..+++  +++|+..+.
T Consensus        81 ~~~~~~~--~~~A~~~~~   96 (126)
T 3upv_A           81 AQIAVKE--YASALETLD   96 (126)
T ss_dssp             HHHHTTC--HHHHHHHHH
T ss_pred             HHHHHhC--HHHHHHHHH
Confidence            9999888  677776665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.28  E-value=1.9e-11  Score=118.59  Aligned_cols=132  Identities=21%  Similarity=0.228  Sum_probs=119.7

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---   77 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---   77 (556)
                      ..|..+..+..+|..+...|++++|+..|++++++.        |....++.++|.++...|++++|+..|++++.+   
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999883        666789999999999999999999999999998   


Q ss_pred             -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        78 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                           +|....++.++|.++..+|++++|+..|++++++        .|....++..++.++...++  +++|+..+.
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  193 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYK  193 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence                 5777889999999999999999999999999999        67777889999999999888  677766665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.28  E-value=1.4e-11  Score=133.90  Aligned_cols=114  Identities=17%  Similarity=0.147  Sum_probs=91.1

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008730           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ  106 (556)
Q Consensus        27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  106 (556)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|++.|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       107 ~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++++++|++..++..++.++...++  +++|++.++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~  115 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYT  115 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999999999999999888  677777665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.27  E-value=3.1e-11  Score=129.20  Aligned_cols=127  Identities=21%  Similarity=0.260  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..|++++|+..|+++++..|+++.++..++.++...++  +++|+..+.
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  402 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYD  402 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence            66666666666666666666666666666666666555  455544443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.26  E-value=6.3e-11  Score=123.86  Aligned_cols=118  Identities=13%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR------------AFAHTKLEEYGSAIQDASKAIEIDPRY   81 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~   81 (556)
                      +..+..+|..+...|++++|+..|+++++.+|++..++..+            |.++...|++++|+..|+++++++|++
T Consensus       211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~  290 (450)
T 2y4t_A          211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI  290 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence            34444444444455555555555555555444444444333            444444455555555555555544444


Q ss_pred             h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           82 P----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        82 ~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +    .++..+|.++...|++++|+..++++++++|++..++..++.++...++
T Consensus       291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  344 (450)
T 2y4t_A          291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM  344 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence            2    2444445555555555555555555555555555555555555444444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.26  E-value=1.9e-11  Score=118.54  Aligned_cols=118  Identities=18%  Similarity=0.094  Sum_probs=109.1

Q ss_pred             HHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 008730           23 EAFRAKKYSQAIDLYSQAIELN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF   98 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~   98 (556)
                      .+...|++++|+..|+++++..    |.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3445689999999999999984    566889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++|+..|+++++++|++..++..++.++...++  +++|+..+.
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  135 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL  135 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence            999999999999999999999999999999887  677777665

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.24  E-value=1.2e-10  Score=126.51  Aligned_cols=131  Identities=17%  Similarity=0.081  Sum_probs=115.3

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|..+..+..+|..+.+.|++++|+..|+++++.+|.+..+|..+|.+|.+.|++++|++.|+++++.+|++..++..+|
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  448 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG  448 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            35567788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|...|++++|++.|+++++..|+++.++..++.++...|+  +++|++.+.
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  499 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQ  499 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence            999999999999999999999999999999999988888877  677776665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=5.1e-12  Score=128.23  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=108.3

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 008730           26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA   90 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~   90 (556)
                      ..+++++|+..|+++++.+|..+.++.++|.++.+.|+|++|+..|+++++++|++               ..+++++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999               699999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|..+|++++|+.+|+++++++|++..++..++.++..+++  +++|+..+.
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~  254 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQ  254 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999988  788877766

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.24  E-value=5.4e-11  Score=129.30  Aligned_cols=131  Identities=15%  Similarity=0.120  Sum_probs=98.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|.....|..+|..+...|++++|++.|+++++..|.+..++..+|.+|.+.|++++|++.|+++++.+|.++.+|..+|
T Consensus       403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  482 (597)
T 2xpi_A          403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG  482 (597)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34556677777777888888888888888877777777777777777777777888888888877777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           90 AAYLAMGKFKEALKDFQQVKKL------SPND-PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        90 ~~~~~~g~~~~A~~~~~~al~l------~p~~-~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|...|++++|++.|+++++.      +|++ ..++..++.++...|+  +++|++.++
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  540 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM--YDAAIDALN  540 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence            7777777788888777777777      4544 5677777777777766  455555544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.23  E-value=4.5e-11  Score=103.01  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 008730           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AA  119 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~  119 (556)
                      .+.++.++|.++++.|+|++|+..|++|++++|+++.+|.++|.+|..+|++++|+..|+++++++|++..       ++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999987753       56


Q ss_pred             HHHHHHHHHHhhhhHHHHhcCCC
Q 008730          120 QKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       120 ~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..+|.++..+++  +++|++.++
T Consensus        87 ~~lg~~~~~~~~--~~~A~~~~~  107 (127)
T 4gcn_A           87 SRAGNAFQKQND--LSLAVQWFH  107 (127)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHcCC--HHHHHHHHH
Confidence            666666666665  677766654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.23  E-value=4.7e-11  Score=107.34  Aligned_cols=97  Identities=22%  Similarity=0.243  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        44 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      ++.++.++..+|.++...|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHhcCCC
Q 008730          124 ECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       124 ~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++..+++  +++|+..+.
T Consensus        87 ~~~~~~g~--~~~A~~~~~  103 (164)
T 3sz7_A           87 LARFDMAD--YKGAKEAYE  103 (164)
T ss_dssp             HHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHccC--HHHHHHHHH
Confidence            99999988  678777665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.23  E-value=4.2e-11  Score=102.33  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      .++.+|.++.+.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhHHHHhcCCC
Q 008730          130 KKLKFEEAIAVPE  142 (556)
Q Consensus       130 ~~~~~~~Ai~~~~  142 (556)
                      |+  +++|+..+.
T Consensus        99 g~--~~~A~~~~~  109 (121)
T 1hxi_A           99 HN--ANAALASLR  109 (121)
T ss_dssp             HH--HHHHHHHHH
T ss_pred             CC--HHHHHHHHH
Confidence            88  677766654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.23  E-value=6.3e-11  Score=118.32  Aligned_cols=131  Identities=14%  Similarity=0.007  Sum_probs=118.7

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .|+....|..+|..+...|++++|...|+++++++|.++. +|.++|.++.+.|++++|+..|+++++.+|.+..+|...
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            6777889999999999999999999999999999999987 999999999999999999999999999999999888877


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLA-MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +..... .|++++|++.|+++++..|+++.++..++..+...|+  +++|...++
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~  227 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE  227 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            766544 7999999999999999999999999999999887776  566666655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.23  E-value=8.6e-11  Score=116.63  Aligned_cols=124  Identities=17%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH-
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG-   89 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg-   89 (556)
                      |+.+..++.+|..+...|++++|+..|++     |.+..++..+|.++.++|++++|+..++++++.+|++.......+ 
T Consensus        98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~  172 (291)
T 3mkr_A           98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW  172 (291)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence            44444555555555555555555555554     455555555555555555555555555555555555432222222 


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           90 -AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        90 -~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                       ..+...|++++|+..|+++++..|+++.++..++.++..+|+  +++|.+.+
T Consensus       173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l  223 (291)
T 3mkr_A          173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVL  223 (291)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence             111122455555555555555555555555555555555554  34444433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.22  E-value=2.2e-11  Score=129.31  Aligned_cols=118  Identities=16%  Similarity=0.097  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      |.....+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus       301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  380 (514)
T 2gw1_A          301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE  380 (514)
T ss_dssp             TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence            44455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKA  128 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~------~~~~l~~~~~~  128 (556)
                      ++...|++++|+..|+++++..|+++.      ++..++.++..
T Consensus       381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence            666666666666666666666665543      56666666555

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.22  E-value=1.6e-10  Score=92.12  Aligned_cols=85  Identities=32%  Similarity=0.433  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ..+..+..+|..+...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..++++++++|+++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777777776


Q ss_pred             HHHcC
Q 008730           92 YLAMG   96 (556)
Q Consensus        92 ~~~~g   96 (556)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            66543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.22  E-value=5.1e-11  Score=118.37  Aligned_cols=118  Identities=17%  Similarity=0.218  Sum_probs=112.4

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      .+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       103 ~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..|+++++..|++..++..++.++...++  +++|+..+.
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  264 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQ--YDLAAKQLV  264 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence            99999999999999999999999998887  677776665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.21  E-value=2.3e-10  Score=121.45  Aligned_cols=105  Identities=30%  Similarity=0.470  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   90 (556)
                      ...+..+..+|..++..|+|++|+..|+++++.+| ++.++..+|.++.+.|++++|+..++++++++|+++.+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            46789999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      ++..+|++++|+..|+++++..|.+.
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999998553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.21  E-value=5.2e-11  Score=118.05  Aligned_cols=130  Identities=19%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH--
Q 008730           13 RAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK--   83 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~-g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--   83 (556)
                      .+..+..+|.++... |++++|+.+|++|+++.|..      ..++.++|.++.++|+|++|+..|+++++++|++..  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            467899999999996 99999999999999998865      567999999999999999999999999999988653  


Q ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHhhhhHHHHhcCCC
Q 008730           84 -----GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA-----QKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        84 -----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-----~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                           +++++|.++..+|++++|+.+|+++++++|+...+.     ..+...+......++++|+..+.
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~  264 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence                 689999999999999999999999999999876643     23333333222233677766654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.21  E-value=3.1e-11  Score=107.31  Aligned_cols=95  Identities=16%  Similarity=0.085  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------YPK-----GYYRRGAAYLAMGKFKEALKDFQQVKKL----  111 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~l----  111 (556)
                      +..+.++|..+.+.|+|++|+..|++|++++|+       +..     +|.++|.++..+|++++|+.+|++|+++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            566889999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730          112 ---SPNDPDAA----QKVKECEKAVKKLKFEEAIAVPESE  144 (556)
Q Consensus       112 ---~p~~~~~~----~~l~~~~~~~~~~~~~~Ai~~~~~~  144 (556)
                         +|++..+|    ++++.++..+++  +++|+..++++
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kA  128 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKV  128 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHH
Confidence               99999999    999999999998  78888877733

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.21  E-value=6.1e-11  Score=114.88  Aligned_cols=104  Identities=23%  Similarity=0.248  Sum_probs=97.6

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--   77 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--   77 (556)
                      ...+..+..+..+|.++...|++++|+.+|+++++.        +|....++.++|.++..+|++++|+..+++++++  
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  158 (283)
T 3edt_B           79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA  158 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            446788999999999999999999999999999998        4777889999999999999999999999999999  


Q ss_pred             ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        78 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                            +|....++..+|.++..+|++++|+..+++++++
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                  7777889999999999999999999999999987

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.21  E-value=8.3e-11  Score=125.83  Aligned_cols=126  Identities=25%  Similarity=0.317  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      +.++..+|..+...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..|++++|+..|+++++++|++..++..++.++...++  +++|+..+.
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  368 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAFFN  368 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999888  677777665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.19  E-value=2.7e-10  Score=98.33  Aligned_cols=99  Identities=22%  Similarity=0.258  Sum_probs=91.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        42 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      ..+|.++..+..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..++++++++|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHhcCCC
Q 008730          122 VKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       122 l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.++..+++  +++|+..+.
T Consensus        83 l~~~~~~~~~--~~~A~~~~~  101 (137)
T 3q49_B           83 LGQCQLEMES--YDEAIANLQ  101 (137)
T ss_dssp             HHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHhh--HHHHHHHHH
Confidence            9999999888  677766665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.18  E-value=3.5e-10  Score=119.15  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=107.1

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--   78 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--   78 (556)
                      .+..+..+..+|.++...|++++|+++|++|+++         +|....+|.++|.+|..+|++++|+.++++++++.  
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3445678889999999999999999999999987         67788999999999999999999999999999873  


Q ss_pred             ------CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           79 ------PRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        79 ------p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                            +..+.++.++|.++...|  ++++|+.+|++|++++|+++.++..++.+...++.
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~  187 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN  187 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence                  456789999998887764  69999999999999999999999999988777654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.18  E-value=5e-10  Score=109.14  Aligned_cols=125  Identities=16%  Similarity=0.237  Sum_probs=112.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      +|..+.+++.+|..+...|++++|+.+|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            456788999999999999999999999999999  8889999999999999    999999999999999986  79999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730           86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (556)
Q Consensus        86 ~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~  142 (556)
                      +.+|.+|..    .+++++|+.+|+++++.+  ++.++..++.++..    .++  +++|+..+.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~  138 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD--FKKAVEYFT  138 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC--HHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC--HHHHHHHHH
Confidence            999999999    999999999999999984  89999999999987    655  677766655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.1e-10  Score=96.82  Aligned_cols=94  Identities=16%  Similarity=0.240  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 008730           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQ  120 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~  120 (556)
                      ++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      88889


Q ss_pred             HHHHHHHHHhhhhHHHHhcCCC
Q 008730          121 KVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       121 ~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++.++..++.  +++|+..++
T Consensus        83 ~~~~~~~~~~~--~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGS--VQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHC--CCCCSSSSS
T ss_pred             HHHHHHHHHHh--HhhhHhHHH
Confidence            99999888885  455554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.17  E-value=1.3e-10  Score=116.12  Aligned_cols=131  Identities=15%  Similarity=0.056  Sum_probs=114.0

Q ss_pred             ChhHHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFR-------AKKY-------SQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~-------~g~~-------~~Al~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      .|..+..|+.+|..+..       .|++       ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|+++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            46778899999998874       5885       999999999999 79999999999999999999999999999999


Q ss_pred             HHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HhhhhHHHHhcCCC
Q 008730           75 IEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA-VKKLKFEEAIAVPE  142 (556)
Q Consensus        75 l~l~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~-~~~~~~~~Ai~~~~  142 (556)
                      ++++|.++. +|..+|.++...|++++|+..|++|++..|.+..++...+..... .++  +++|+..++
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~--~~~A~~~~~  193 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE  193 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC--HHHHHHHHH
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999987 999999999999999999999999999999998887665555332 343  566665554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.16  E-value=8.6e-11  Score=115.84  Aligned_cols=136  Identities=19%  Similarity=0.177  Sum_probs=120.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus         6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      ....+|..+..+..+|..+...|++++|+..|++++++        .|....++..+|.++...|++++|+..+++++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999995        6777889999999999999999999999999988


Q ss_pred             --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           78 --------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        78 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                              +|....++..+|.++...|++++|+..|++++++.        |....++..++.++...++  +++|+..+
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~  176 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYY  176 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence                    45668899999999999999999999999999984        5556778889999888877  67777766


Q ss_pred             CC
Q 008730          142 ES  143 (556)
Q Consensus       142 ~~  143 (556)
                      .+
T Consensus       177 ~~  178 (311)
T 3nf1_A          177 QR  178 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.15  E-value=3.5e-10  Score=90.03  Aligned_cols=84  Identities=30%  Similarity=0.497  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730           46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (556)
Q Consensus        46 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~  125 (556)
                      .++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH
Q 008730          126 EKAV  129 (556)
Q Consensus       126 ~~~~  129 (556)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.14  E-value=4.1e-11  Score=98.96  Aligned_cols=98  Identities=20%  Similarity=0.256  Sum_probs=91.3

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 008730           43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ  120 (556)
Q Consensus        43 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~  120 (556)
                      ++|+++.++..+|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++..|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368889999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHH-hhhhHHHHhcCCC
Q 008730          121 KVKECEKAV-KKLKFEEAIAVPE  142 (556)
Q Consensus       121 ~l~~~~~~~-~~~~~~~Ai~~~~  142 (556)
                      .++.++..+ ++  +++|++...
T Consensus        81 ~l~~~~~~~~~~--~~~A~~~~~  101 (112)
T 2kck_A           81 AKADALRYIEGK--EVEAEIAEA  101 (112)
T ss_dssp             HHHHHHTTCSSC--SHHHHHHHH
T ss_pred             HHHHHHHHHhCC--HHHHHHHHH
Confidence            999999888 87  567766554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.14  E-value=8.4e-11  Score=95.83  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   95 (556)
                      .+.+|..++..|++++|+..|+++++.+|.++. +++++|.++..+|++++|+..|+++++++|+++.++.+        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            356788888999999999999999999999988 99999999999999999999999999999988887754        


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 008730           96 GKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p~~~  116 (556)
                      +.+.+|+..|++++..+|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            567788888888887777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.14  E-value=5e-10  Score=99.65  Aligned_cols=102  Identities=18%  Similarity=0.234  Sum_probs=93.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|..+..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|.+..++..++
T Consensus        43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  122 (166)
T 1a17_A           43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  122 (166)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999885555


Q ss_pred             HH--HHHcCCHHHHHHHHHHHHHh
Q 008730           90 AA--YLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        90 ~~--~~~~g~~~~A~~~~~~al~l  111 (556)
                      .+  +...|++++|+..++++..+
T Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          123 ECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccchHHH
Confidence            54  88899999999999877554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.13  E-value=2.3e-10  Score=117.61  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=110.1

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   81 (556)
                      ..+..+.++..+|..+...|++++|+.++++|+++.+.       .+.++.++|.+|..+|++++|+..|++++++.+..
T Consensus       138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  217 (383)
T 3ulq_A          138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE  217 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence            34557888999999999999999999999999988543       34688899999999999999999999999885543


Q ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 ------PKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                            ..++.++|.+|..+|++++|+.+|+++++     .+ |....++..++.++..+|+  +++|+..+.
T Consensus       218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  288 (383)
T 3ulq_A          218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHS  288 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence                  25889999999999999999999999999     45 7778888999999888887  677766655

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.12  E-value=3e-10  Score=99.93  Aligned_cols=131  Identities=15%  Similarity=0.215  Sum_probs=110.4

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   81 (556)
                      .+..+..+..+|..+...|++++|+.++++++++.+..      ..++..+|.++...|++++|+..+++++++.+..  
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            34567899999999999999999999999999986543      2588999999999999999999999999876543  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                          ..++..+|.++...|++++|+..+++++++.+..      ..++..++.++...++  +++|+....
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  153 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE  153 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence                6689999999999999999999999999884322      4567788888888877  566655544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.12  E-value=2.1e-11  Score=129.09  Aligned_cols=115  Identities=14%  Similarity=0.153  Sum_probs=107.3

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 008730           26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA   90 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~   90 (556)
                      ..+++++|+..|+++++.+|..+.++.++|.++++.|+|++|+..|++|++++|.+               ..+|+++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34567788889999999999999999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|..+|++++|+.+|++|++++|++..+++.++.++..+++  +++|+..+.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~  375 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFE  375 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999988  678877766

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=2.4e-10  Score=112.58  Aligned_cols=132  Identities=23%  Similarity=0.253  Sum_probs=118.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--   78 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--   78 (556)
                      ..+..+..+..+|..+...|++++|+.+|+++++.        .|....++..+|.++...|++++|+..+++++++.  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999998        35667899999999999999999999999999884  


Q ss_pred             ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        79 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                            |....++..+|.++...|++++|+..|++++++        .|....++..++.++...++  +++|+..+.
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  219 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYK  219 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence                  556789999999999999999999999999998        66677889999999998888  677766665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.12  E-value=5.5e-10  Score=91.69  Aligned_cols=88  Identities=16%  Similarity=0.277  Sum_probs=71.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 008730           43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ  120 (556)
Q Consensus        43 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~  120 (556)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            478899999999999999999999999999999999999999999999999999999999999999998764  344455


Q ss_pred             HHHHHHHHHh
Q 008730          121 KVKECEKAVK  130 (556)
Q Consensus       121 ~l~~~~~~~~  130 (556)
                      .+...+...+
T Consensus        82 ~l~~~l~~~~   91 (100)
T 3ma5_A           82 ELQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHcc
Confidence            5555544433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.11  E-value=4.6e-11  Score=110.97  Aligned_cols=123  Identities=15%  Similarity=0.053  Sum_probs=102.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---------------
Q 008730           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------------   82 (556)
Q Consensus        18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------------   82 (556)
                      ...+......|+|++|.+.+....+..+..+..+..+|.++...|+|++|+..|++++++.|.++               
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence            34455667788999999988888888888899999999999999999999999999999999987               


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           83 -KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        83 -~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                       .+++++|.++..+|++++|+.+++++++++|++..++..++.++..+++  +++|+..+.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~  146 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLY  146 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence             8999999999999999999999999999999999999999999999888  677777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=3.4e-10  Score=122.77  Aligned_cols=121  Identities=8%  Similarity=0.032  Sum_probs=116.3

Q ss_pred             CChhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIE   76 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~----------~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~   76 (556)
                      .+|+...+|..++.++...|+          +++|++.++++++.+|++..+|..++-++.+++  ++++|++.++++++
T Consensus        58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~  137 (567)
T 1dce_A           58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence            467888999999999999998          999999999999999999999999999999999  77999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           77 IDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        77 l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      ++|++..+|..++.++..+| .+++|+++++++++.+|.+..+|..++.++..+
T Consensus       138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999999999 999999999999999999999999999998876

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A

Probab=99.11  E-value=1.2e-09  Score=101.04  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=51.7

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  367 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~  367 (556)
                      +++.+|||+||++..+.++++.+... ..+.+|++||++|.     +++..|..+    +..++.++||||....
T Consensus        26 m~i~~iSD~Hg~~~~l~~~l~~~~~~-~~D~ii~~GDl~~~-----~~~~~l~~l----~~~~~~V~GNhD~~~~   90 (190)
T 1s3l_A           26 MKIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFVSL-----FVIKEFENL----NANIIATYGNNDGERC   90 (190)
T ss_dssp             CEEEEECCCTTCHHHHHHHHHHHHHS-CCSEEEECSCCCST-----HHHHHGGGC----SSEEEEECCTTCCCHH
T ss_pred             eEEEEEeeCCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCH-----HHHHHHHhc----CCCEEEEeCCCcchHH
Confidence            67999999999999999999876432 34679999999984     677776544    3479999999998653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.08  E-value=8.3e-10  Score=113.89  Aligned_cols=122  Identities=19%  Similarity=0.186  Sum_probs=112.4

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CC
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DP   79 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p   79 (556)
                      ++..+..+..+|..++..|++++|+..|+++++.+|++.    .++..+|.++...|++++|+..+++++++      +|
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            367788899999999999999999999999999999987    58999999999999999999999999998      57


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhh
Q 008730           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ....++..+|.+|..+|++++|+..|++++++      .|....++..++.++...++
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            77899999999999999999999999999999      55567788999999988877

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.07  E-value=1.2e-09  Score=114.99  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=111.9

Q ss_pred             ChhHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChHH
Q 008730           10 SVSRAEELKALANEAFRA--KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~--g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      .+..+..+..+|.++...  ++|++|+++|+++++++|+++.++..+|.++..+   +++++|++.++++++++|+++.+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~  211 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL  211 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence            345577888888877665  5799999999999999999999999999987665   56788999999999999999999


Q ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           85 YYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        85 ~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +..+|..+...    +++++|++.+++++..+|++..++..++.++...++  +++|+..+.
T Consensus       212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~  271 (472)
T 4g1t_A          212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--PDKAIELLK  271 (472)
T ss_dssp             HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--hHHHHHHHH
Confidence            99999877665    577899999999999999999999999999998888  677777665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.06  E-value=4.2e-10  Score=99.79  Aligned_cols=95  Identities=14%  Similarity=0.199  Sum_probs=80.1

Q ss_pred             CCChhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKY----------SQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-----------EYGS   66 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~----------~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~   66 (556)
                      +.+|+.+++|.++|.++...+++          ++|+..|++|++++|++..+|+++|.+|..+|           ++++
T Consensus        30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e  109 (158)
T 1zu2_A           30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL  109 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence            35688899999999999999875          59999999999999999999999999999885           8999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        67 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      |+++|++|++++|++.                     .|.+++++.+..++.++.+.
T Consensus       110 A~~~~~kAl~l~P~~~---------------------~y~~al~~~~ka~el~~~~~  145 (158)
T 1zu2_A          110 ATQFFQQAVDEQPDNT---------------------HYLKSLEMTAKAPQLHAEAY  145 (158)
T ss_dssp             HHHHHHHHHHHCTTCH---------------------HHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCH---------------------HHHHHHHHHHhCHhccCccc
Confidence            9999999999999974                     44555555555566555444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.06  E-value=7.9e-10  Score=110.07  Aligned_cols=116  Identities=9%  Similarity=-0.004  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           16 ELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~-~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .....-....+.|++ ++|+..+.++|.++|++..+|+.++.++..++  ++++++..+.+++..+|++..+|+.++.++
T Consensus        34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL  113 (306)
T 3dra_A           34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII  113 (306)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            334444444444444 35666666666666666666666666655555  566666666666666666666666666555


Q ss_pred             ----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           93 ----LAM---GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        93 ----~~~---g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                          ...   ++++++++.++++++.+|++..++...+.+...++.
T Consensus       114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~  159 (306)
T 3dra_A          114 GQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL  159 (306)
T ss_dssp             HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence                444   455566666666666666666666555555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=3.9e-09  Score=102.73  Aligned_cols=124  Identities=22%  Similarity=0.248  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCh
Q 008730           11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP   82 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~   82 (556)
                      +..+.++..+|..+..    .+++++|+..|+++++.+  ++.+++++|.+|..    .+++++|+..|+++++.+  ++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence            3456789999999999    999999999999999986  89999999999999    999999999999999984  89


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730           83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (556)
Q Consensus        83 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~  142 (556)
                      .+++++|.+|..    .+++++|+.+|+++++.+  ++.++..++.++..    .++  +++|+..++
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~  174 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD--LKKALASYD  174 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence            999999999999    999999999999999986  68899999999877    444  677766655

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.05  E-value=1.8e-09  Score=106.82  Aligned_cols=118  Identities=12%  Similarity=0.032  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHH---HhCCCCh--
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAI---EIDPRYP--   82 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~--   82 (556)
                      ...++.+|..+...|++++|+.+|+++++..+..      ..++.++|.+|...|++++|+.+|++++   +..|++.  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            3445567777777778888888888888765443      5577788888888888888888888887   4455532  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhh
Q 008730           83 --KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKK  131 (556)
Q Consensus        83 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~~~~~~~~  131 (556)
                        .+++++|.+|..+|++++|+.++++++++.++      ...++..+|.++..+|+
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~  251 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence              57788888888888888888888888877532      15667777777777776

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.04  E-value=7.4e-10  Score=102.20  Aligned_cols=129  Identities=11%  Similarity=0.064  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCC--
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPR--   80 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~--   80 (556)
                      ..+..+..+|..+...|++++|+.+|+++++      ..+....++.++|.++...|++++|+..+++++++   .++  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            5688999999999999999999999999999      44556788999999999999999999999999998   443  


Q ss_pred             --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DP----DAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        81 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~----~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                        ...++.++|.++..+|++++|+..+++++++.+.  +.    .++..++.++...|+  +++|+..+.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  171 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWL  171 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence              3567999999999999999999999999987432  22    345778888888777  566655544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.04  E-value=1.9e-09  Score=89.49  Aligned_cols=94  Identities=23%  Similarity=0.272  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      .+..+..+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..++++++..|++..++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHhcCCC
Q 008730          127 KAVKKLKFEEAIAVPE  142 (556)
Q Consensus       127 ~~~~~~~~~~Ai~~~~  142 (556)
                      ...++  +++|+..+.
T Consensus        83 ~~~~~--~~~A~~~~~   96 (118)
T 1elw_A           83 EFLNR--FEEAKRTYE   96 (118)
T ss_dssp             HHTTC--HHHHHHHHH
T ss_pred             HHHhh--HHHHHHHHH
Confidence            98887  677766554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.04  E-value=4.1e-10  Score=100.86  Aligned_cols=93  Identities=19%  Similarity=0.170  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  109 (556)
                      +..+..+|..+++.|+|++|+..|++++.+                  +|.+..+++++|.+|..+|++++|+.++++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       110 ~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++|+++.++..+|.++..+++  +++|+..+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~  121 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWK--LDEAEEDLK  121 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhc--HHHHHHHHH
Confidence            9999999999999999999988  677776665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.03  E-value=1.2e-09  Score=92.17  Aligned_cols=85  Identities=13%  Similarity=0.035  Sum_probs=77.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|..+.++..+|.++...|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++.+|+++.......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999987765444


Q ss_pred             HHHHH
Q 008730           90 AAYLA   94 (556)
Q Consensus        90 ~~~~~   94 (556)
                      .+...
T Consensus       103 ai~~~  107 (117)
T 3k9i_A          103 AILFY  107 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.02  E-value=1.4e-09  Score=92.68  Aligned_cols=97  Identities=25%  Similarity=0.345  Sum_probs=90.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730           44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (556)
Q Consensus        44 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  123 (556)
                      .|.+..++..+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..++++++++|++..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHhcCCC
Q 008730          124 ECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       124 ~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++...++  +++|+..+.
T Consensus        92 ~~~~~~~~--~~~A~~~~~  108 (133)
T 2lni_A           92 AALEAMKD--YTKAMDVYQ  108 (133)
T ss_dssp             HHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHhh--HHHHHHHHH
Confidence            99998887  677776665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.01  E-value=3.6e-09  Score=106.10  Aligned_cols=123  Identities=9%  Similarity=0.038  Sum_probs=115.2

Q ss_pred             CCChhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAI   75 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~----------~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al   75 (556)
                      ..+|+...+|..++.++...+.          +++++..+++++..+|.+..+|..++.++..+++  +++++..+.+++
T Consensus        58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l  137 (331)
T 3dss_A           58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  137 (331)
T ss_dssp             TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred             HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence            4578889999999999988776          7999999999999999999999999999999994  999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           76 EIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        76 ~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +.+|.|..+|..++.++...|. ++++++++.++++.+|.|..+|..++.+...+.
T Consensus       138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred             HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999 699999999999999999999999999987773

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.01  E-value=2.6e-10  Score=121.27  Aligned_cols=106  Identities=17%  Similarity=0.212  Sum_probs=95.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +|+.+.++..+|.++...|++++|++.|+++++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  115 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  115 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008730           90 AA--YLAMGKFKEALKDFQ-----------QVKKLSPND  115 (556)
Q Consensus        90 ~~--~~~~g~~~~A~~~~~-----------~al~l~p~~  115 (556)
                      .+  +..+|++++|++.++           ++++++|+.
T Consensus       116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            98  889999999999999           777776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.01  E-value=9.1e-10  Score=109.89  Aligned_cols=128  Identities=10%  Similarity=0.024  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----   81 (556)
                      ..+..+.++|.++...|++++|+.+|++++++.+.      ...++.++|.+|.. |++++|+.+|++|+++.|..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            44677888888888888888888888888888543      24678888888888 88888888888888887643    


Q ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                        ..++.++|.+|..+|++++|+.+|++++++.|++.      .++..++.++..+++  +++|+..++
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~--~~~A~~~~~  219 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD--YVAAQKCVR  219 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence              56788888888888889899888888888866542      245556666665565  566666554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.01  E-value=8.1e-10  Score=113.47  Aligned_cols=125  Identities=14%  Similarity=0.195  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hH
Q 008730           17 LKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK   83 (556)
Q Consensus        17 ~~~lg~~~~~~g~~~~Al~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~   83 (556)
                      ++.+|..++..|++++|+..|++|+++      .+..+.++..+|.+|..+|++++|+.++++|+++.+..       ..
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            344999999999999999999999998      23356889999999999999999999999999985443       46


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      ++.++|.+|..+|++++|+.+|++|+++.+...      .++.++|.++..+++  +++|+..+.+
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~  249 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKR  249 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence            899999999999999999999999999866443      478899999998887  6777776653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=8.6e-10  Score=109.12  Aligned_cols=127  Identities=11%  Similarity=-0.012  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCC
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRY   81 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~   81 (556)
                      ..+..+|..+...+++++|+.+|+++++..+..      ..++.++|.+|..+|++++|+.+|+++++..       +..
T Consensus       116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (293)
T 3u3w_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            344568888888899999999999999975442      3478999999999999999999999999531       223


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..+++++|.+|..+|++++|+.++++++++.+..      ..++..+|.++..+|+. +++|++.+.
T Consensus       196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~  261 (293)
T 3u3w_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYK  261 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHH
Confidence            5688999999999999999999999999987544      77899999999988842 355544443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.00  E-value=2.6e-09  Score=90.30  Aligned_cols=89  Identities=19%  Similarity=0.148  Sum_probs=84.9

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|..+..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  121 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK  121 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCH
Q 008730           90 AAYLAMGKF   98 (556)
Q Consensus        90 ~~~~~~g~~   98 (556)
                      .++..+|++
T Consensus       122 ~~~~~~~~~  130 (131)
T 2vyi_A          122 IAELKLREA  130 (131)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.00  E-value=3.9e-09  Score=105.07  Aligned_cols=123  Identities=9%  Similarity=0.069  Sum_probs=116.2

Q ss_pred             CChhHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--HHHHHHHHHHHhCC
Q 008730            9 SSVSRAEELKALANEA----FRA---KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--SAIQDASKAIEIDP   79 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~----~~~---g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~p   79 (556)
                      .+|....+|..++.++    ...   ++++++++.+.++++.+|.+..+|..++.++.+++.++  ++++.++++++.+|
T Consensus        98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A           98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            3577788999999998    666   89999999999999999999999999999999999998  99999999999999


Q ss_pred             CChHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           80 RYPKGYYRRGAAYLAMGK------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        80 ~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      .|..+|..++.++...++      ++++++++++++..+|+|..++..++.++...++
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999998      9999999999999999999999999999988876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.99  E-value=1.2e-09  Score=112.14  Aligned_cols=132  Identities=15%  Similarity=0.117  Sum_probs=112.4

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-   80 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-   80 (556)
                      ..+..+..+..+|.++...|++++|+.++++|+++.+.       .+.++.++|.++..+|++++|+..|++++++.+. 
T Consensus       136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  215 (378)
T 3q15_A          136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI  215 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence            35677889999999999999999999999999987543       2567889999999999999999999999987431 


Q ss_pred             -----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           81 -----YPKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        81 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                           ...++.++|.+|..+|++++|+.+|+++++     .+|....++..++.++..+|+  +++|+...+
T Consensus       216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  285 (378)
T 3q15_A          216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ--TQKAFQFIE  285 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence                 246889999999999999999999999999     678778899999999998887  566666555

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.98  E-value=1.4e-09  Score=111.39  Aligned_cols=131  Identities=15%  Similarity=0.205  Sum_probs=115.2

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   81 (556)
                      .+..+..+..+|..+...|++++|+.+|++++++.+...      .++.++|.++...|++++|+..+++++++.|..  
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  262 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  262 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence            456678899999999999999999999999999876543      389999999999999999999999999987765  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                          ..++..+|.++...|++++|+..|++++++.+..      ..++..++.++...|+  +++|+..+.
T Consensus       263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  331 (406)
T 3sf4_A          263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAE  331 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence                7799999999999999999999999999986654      5678889999988887  677766654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.98  E-value=2.4e-09  Score=87.81  Aligned_cols=85  Identities=20%  Similarity=0.207  Sum_probs=72.3

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYY   86 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~   86 (556)
                      .+|+.+.+++.+|.+++..|++++|+..|+++++++|+++.+|..+|.+|..+|++++|+..|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999998764  344444


Q ss_pred             HHHHHHH
Q 008730           87 RRGAAYL   93 (556)
Q Consensus        87 ~lg~~~~   93 (556)
                      .+...+.
T Consensus        82 ~l~~~l~   88 (100)
T 3ma5_A           82 ELQDAKL   88 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.97  E-value=3.8e-09  Score=104.48  Aligned_cols=120  Identities=16%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCC
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~   81 (556)
                      ..+..+...|..++..|++++|+..|+++++.+|.+    ..++..+|.++...|++++|+..+++++++      .|..
T Consensus         3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A            3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence            346778899999999999999999999999999998    478889999999999999999999999987      4556


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhh
Q 008730           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKK  131 (556)
Q Consensus        82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~  131 (556)
                      ..++..+|.++...|++++|+..+++++++.|..      ..++..++.++...++
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            7899999999999999999999999999987654      3378888888888776

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.97  E-value=1.5e-08  Score=100.03  Aligned_cols=132  Identities=12%  Similarity=0.098  Sum_probs=112.6

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---   81 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   81 (556)
                      +.....+...+..++..|+|++|++.++++++..+...      ..++.+|.++...|++++|+..+++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            45567788899999999999999999999999988764      346678889999999999999999999876543   


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVK---KLSPNDP----DAAQKVKECEKAVKKLKFEEAIAVPESE  144 (556)
Q Consensus        82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~----~~~~~l~~~~~~~~~~~~~~Ai~~~~~~  144 (556)
                         ..+++++|.+|..+|++++|+.+|++|+   +..|++.    .++.+++.++..+++  +++|+..+.++
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~ka  222 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKA  222 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHHHH
Confidence               5689999999999999999999999999   5566653    588999999998888  78888877643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.97  E-value=8.7e-09  Score=86.23  Aligned_cols=98  Identities=29%  Similarity=0.447  Sum_probs=87.9

Q ss_pred             hCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           43 LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        43 ~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      .+|.. ..++..+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..++++++..|.+..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35655 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHhcCCC
Q 008730          122 VKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       122 l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.++...++  +++|+..+.
T Consensus        83 la~~~~~~~~--~~~A~~~~~  101 (125)
T 1na0_A           83 LGNAYYKQGD--YDEAIEYYQ  101 (125)
T ss_dssp             HHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHhcC--HHHHHHHHH
Confidence            9999988887  677766654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=2.1e-09  Score=101.16  Aligned_cols=126  Identities=17%  Similarity=0.019  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----EYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ..+.+++.+|..+...+++++|+.+|+++++.  .++.+++++|.+|.. +    ++++|+.+|+++++  +.++.++++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            46789999999999999999999999999875  689999999999988 7    89999999999964  578999999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHh--hhhHHHHhcCCC
Q 008730           88 RGAAYLA----MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVK--KLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~~~~----~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~--~~~~~~Ai~~~~  142 (556)
                      +|.+|..    .+++++|+.+|+++++..|  .++.++..++.++..-.  ..++++|+..+.
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            9999998    8999999999999999988  35899999999987721  112566666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.96  E-value=4.2e-09  Score=89.64  Aligned_cols=92  Identities=23%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKV  122 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l  122 (556)
                      .+++.+|.++...|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|+++++..|++   +.++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999998   899999999999999999999999999999999   8899999


Q ss_pred             HHHHHHHhhhhHHHHhcCCC
Q 008730          123 KECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       123 ~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +.++..+|+  +++|+..+.
T Consensus        83 a~~~~~~g~--~~~A~~~~~  100 (129)
T 2xev_A           83 GLSQYGEGK--NTEAQQTLQ  100 (129)
T ss_dssp             HHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHcCC--HHHHHHHHH
Confidence            999998887  677776665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.96  E-value=2e-09  Score=116.83  Aligned_cols=123  Identities=11%  Similarity=0.052  Sum_probs=116.0

Q ss_pred             CChhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHH
Q 008730            9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .+|+..++|..++.++...+  ++++|++.++++++.+|.+..+|..++.++.++| .+++|++++.++++.+|.+..+|
T Consensus       102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW  181 (567)
T 1dce_A          102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  181 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence            46788999999999999999  7799999999999999999999999999999999 89999999999999999999999


Q ss_pred             HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           86 YRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        86 ~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++++.++..+              +.+++|++++.+|+.++|++..+|.+++.++...++
T Consensus       182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            9999999986              568999999999999999999999999998876655

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=5.6e-09  Score=90.79  Aligned_cols=99  Identities=13%  Similarity=0.155  Sum_probs=91.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730           42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (556)
Q Consensus        42 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  118 (556)
                      ..+|.+...+..+|.++...|++++|+..|+++++.+|++   ..+++.+|.++...|++++|+..++++++++|++..+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3467889999999999999999999999999999999997   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          119 AQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +..++.++...++  +++|+..+.
T Consensus       102 ~~~~a~~~~~~~~--~~~A~~~~~  123 (148)
T 2dba_A          102 LYRRSQALEKLGR--LDQAVLDLQ  123 (148)
T ss_dssp             HHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999887  677766655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.95  E-value=4.3e-09  Score=103.70  Aligned_cols=97  Identities=23%  Similarity=0.249  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (556)
Q Consensus        45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  124 (556)
                      |.++.++..+|.++...|+|++|+..|+++++.+|+++.+++++|.+|..+|++++|+..++++++++|++..++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHhcCCCC
Q 008730          125 CEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus       125 ~~~~~~~~~~~~Ai~~~~~  143 (556)
                      ++..+++  +++|+..+..
T Consensus        81 ~~~~~g~--~~~A~~~~~~   97 (281)
T 2c2l_A           81 CQLEMES--YDEAIANLQR   97 (281)
T ss_dssp             HHHHTTC--HHHHHHHHHH
T ss_pred             HHHHcCC--HHHHHHHHHH
Confidence            9999887  6777776653

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6

Probab=98.95  E-value=4.5e-09  Score=99.75  Aligned_cols=72  Identities=8%  Similarity=0.070  Sum_probs=53.6

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ++|+++||+||+...+.++++..... ..+.+|++||++|+|+...++..++..++.. +..++.++||||...
T Consensus         6 mri~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~-~~pv~~v~GNHD~~~   77 (228)
T 1uf3_A            6 RYILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEA-HLPTAYVPGPQDAPI   77 (228)
T ss_dssp             CEEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG-CSCEEEECCTTSCSH
T ss_pred             EEEEEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEECCCCCchh
Confidence            57999999999999998888765321 2357999999999997666554455444432 335999999999754

>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7

Probab=98.95  E-value=4.5e-09  Score=96.03  Aligned_cols=110  Identities=18%  Similarity=0.195  Sum_probs=76.0

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      +++.+|||+||++..|.++++.+..  ..+.++++||+..      +++   ..+.    ..++.++||||....     
T Consensus         7 m~i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~~------~~l---~~l~----~~~~~v~GNhD~~~~-----   66 (176)
T 3ck2_A            7 QTIIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSEL------RPD---SPLW----EGIRVVKGNMDFYAG-----   66 (176)
T ss_dssp             EEEEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCCS------CTT---CGGG----TTEEECCCTTCCSTT-----
T ss_pred             cEEEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCch------HHH---Hhhh----CCeEEecCcccchhc-----
Confidence            4699999999999999999998753  4567999999721      222   2222    259999999997531     


Q ss_pred             chhhHHhhhhHHHHHHHHHHhcccccc--ccc-CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC
Q 008730          373 FEGEVRSKLSETFVELFAEVFCCLPLA--HVL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP  449 (556)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~--~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~  449 (556)
                                             +|..  ..+ +.+++++||.+..+                           |     
T Consensus        67 -----------------------~p~~~~~~~~~~~i~~~Hg~~~~~---------------------------~-----   91 (176)
T 3ck2_A           67 -----------------------YPERLVTELGSTKIIQTHGHLFDI---------------------------N-----   91 (176)
T ss_dssp             -----------------------CCSEEEEEETTEEEEEECSGGGTT---------------------------T-----
T ss_pred             -----------------------CCcEEEEEECCeEEEEECCCccCC---------------------------C-----
Confidence                                   1211  112 45799999865100                           0     


Q ss_pred             CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccC
Q 008730          450 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEG  491 (556)
Q Consensus       450 ~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G  491 (556)
                                    .+.+.+.++++..+++++|-||.-....
T Consensus        92 --------------~~~~~l~~~~~~~~~d~vi~GHtH~~~~  119 (176)
T 3ck2_A           92 --------------FNFQKLDYWAQEEEAAICLYGHLHVPSA  119 (176)
T ss_dssp             --------------TCSHHHHHHHHHTTCSEEECCSSCCEEE
T ss_pred             --------------CCHHHHHHHHHhcCCCEEEECCcCCCCc
Confidence                          1235677778889999999999986543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.94  E-value=3.6e-09  Score=108.27  Aligned_cols=121  Identities=16%  Similarity=0.201  Sum_probs=108.2

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCC
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DPR   80 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~   80 (556)
                      ...+..+..+|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+..+++++.+      .|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34577899999999999999999999999999999984    68999999999999999999999999987      345


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhh
Q 008730           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKK  131 (556)
Q Consensus        81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~  131 (556)
                      ...++..+|.++..+|++++|+..+++++++.|..      ..++..++.++...++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999997654      4478888888888776

>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7

Probab=98.94  E-value=3.2e-09  Score=100.37  Aligned_cols=119  Identities=18%  Similarity=0.267  Sum_probs=81.7

Q ss_pred             CcceEeccCCCCHH------HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          293 KHFTVCGDVHGQFY------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       293 ~~i~vigDiHG~~~------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ++|.+|||+||+..      .|.++++    ....+.+|++||++|     .+++.+|..+.    ..+++++||||...
T Consensus        26 m~i~~iSD~H~~~~~~~l~~~l~~~~~----~~~~D~vi~~GDl~~-----~~~l~~l~~~~----~~v~~V~GNHD~~~   92 (215)
T 2a22_A           26 DLVLLIGDLKIPYGAKELPSNFRELLA----TDKINYVLCTGNVCS-----QEYVEMLKNIT----KNVYIVSGDLDSAI   92 (215)
T ss_dssp             EEEEEECCCCTTTTCSSCCGGGHHHHH----CTTCCEEEECSCCCC-----HHHHHHHHHHC----SCEEECCCTTCCSC
T ss_pred             cEEEEEecCCCCCChHHHHHHHHHHHh----cCCCCEEEECCCCCC-----HHHHHHHHHcC----CCEEEecCCCcCcc
Confidence            57999999999763      3334443    223467999999997     57888887664    36999999999876


Q ss_pred             cccccCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhh
Q 008730          367 MNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELL  443 (556)
Q Consensus       367 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~ll  443 (556)
                      ....                   .+|+..+|....+   +.+++++||....+                           
T Consensus        93 ~~~~-------------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~~~~---------------------------  126 (215)
T 2a22_A           93 FNPD-------------------PESNGVFPEYVVVQIGEFKIGLMHGNQVLP---------------------------  126 (215)
T ss_dssp             CBCC-------------------GGGTBCCCSEEEEEETTEEEEEECSTTSSS---------------------------
T ss_pred             cccC-------------------hhhHhhCCceEEEecCCeEEEEEcCCccCC---------------------------
Confidence            5411                   0255667754432   34799999854100                           


Q ss_pred             cCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccc
Q 008730          444 WSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD  489 (556)
Q Consensus       444 w~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~  489 (556)
                      |                   .+.+.+.++++..++++++-||.-..
T Consensus       127 ~-------------------~~~~~l~~~~~~~~~d~vl~GHtH~~  153 (215)
T 2a22_A          127 W-------------------DDPGSLEQWQRRLDCDILVTGHTHKL  153 (215)
T ss_dssp             T-------------------TCHHHHHHHHHHHTCSEEEECSSCCC
T ss_pred             C-------------------CCHHHHHHHHhhcCCCEEEECCcCCC
Confidence            1                   13456677777789999999999754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=2.8e-09  Score=106.31  Aligned_cols=128  Identities=24%  Similarity=0.202  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--C--
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--Y--   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~--   81 (556)
                      ..+..+...|..+...|+|++|+.+|.+++++.+..      ..++.++|.+|..+|++++|+.+|++++++.+.  +  
T Consensus        34 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~  113 (307)
T 2ifu_A           34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD  113 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            334556667889999999999999999999997543      568999999999999999999999999998543  2  


Q ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                        ..++.++|.+|.. |++++|+.+|++|+++.|..      ..++..++.++..+++  +++|+..+.
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~  179 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQ  179 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence              4689999999999 99999999999999998754      5678889999988887  788877766

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.93  E-value=7.4e-10  Score=112.33  Aligned_cols=103  Identities=17%  Similarity=0.095  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YL   93 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~   93 (556)
                      ..+.++|.++...|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998 44


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           94 AMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                      ..+..++|...|++++...|+++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788899999999999998764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.92  E-value=2e-08  Score=100.66  Aligned_cols=119  Identities=12%  Similarity=0.048  Sum_probs=110.8

Q ss_pred             CChhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHH
Q 008730            9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .+|....+|..++.++...+  +++++++.+.++++.+|.+..+|..++.+....|. ++++++++.++++.+|.|..+|
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW  182 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  182 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            46888999999999999999  49999999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           86 YRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        86 ~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      .+++.++..+              +.++++++++.+++..+|+|..+|..+..++.
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999988              56899999999999999999999987766554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=3.4e-09  Score=99.70  Aligned_cols=127  Identities=17%  Similarity=0.045  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCC--CC
Q 008730           12 SRAEELKALANEAFRAK----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDP--RY   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g----~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p--~~   81 (556)
                      ..+.+++.+|..|.. +    ++++|+.+|+++.+  +.++.+++++|.+|..    .+++++|+.+|+++++..|  .+
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            356789999999998 7    99999999999965  6789999999999988    8899999999999999988  35


Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh----hhhHHHHhcCCC
Q 008730           82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK----KLKFEEAIAVPE  142 (556)
Q Consensus        82 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~----~~~~~~Ai~~~~  142 (556)
                      +.+++++|.+|..    .+++++|+.+|++++++ |.++.+...++.++....    ..++++|+..++
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~  192 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN  192 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence            9999999999999    89999999999999999 778889999999987642    123666666554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.92  E-value=1.4e-09  Score=112.23  Aligned_cols=131  Identities=14%  Similarity=0.219  Sum_probs=113.3

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   81 (556)
                      .+..+..+..+|..+...|++++|+.+|++++++.+...      .++.++|.+|...|++++|+..+++++++.+..  
T Consensus       219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  298 (411)
T 4a1s_A          219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE  298 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence            355677899999999999999999999999999877543      389999999999999999999999999987754  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                          ..++..+|.++..+|++++|+.+|++++++.+..      ..++..++.++...|+  +++|+..+.
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  367 (411)
T 4a1s_A          299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG--HERALKYAE  367 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence                7799999999999999999999999999986543      4578889999988887  566665554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.91  E-value=3e-09  Score=105.29  Aligned_cols=131  Identities=15%  Similarity=0.202  Sum_probs=112.5

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   81 (556)
                      .+..+..+..+|..+...|++++|+.+++++++..+..      ..++..+|.++...|++++|+..+++++.+.+..  
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  258 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence            45567789999999999999999999999999886543      3489999999999999999999999999987665  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                          ..++..+|.++...|++++|+..+++++++.+..      ..++..++.++...|+  +++|+..+.
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  327 (338)
T 3ro2_A          259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence                7799999999999999999999999999986543      4478889999988887  566655544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.91  E-value=5.4e-09  Score=88.44  Aligned_cols=95  Identities=16%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 008730           46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-------PDA  118 (556)
Q Consensus        46 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~  118 (556)
                      ..+..+..+|.++...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++..|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999999999877       889


Q ss_pred             HHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          119 AQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +..++.++...++  +++|+..+.
T Consensus        82 ~~~la~~~~~~~~--~~~A~~~~~  103 (131)
T 1elr_A           82 YARIGNSYFKEEK--YKDAIHFYN  103 (131)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--HHHHHHHHH
Confidence            9999999988887  677766654

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}

Probab=98.90  E-value=1.5e-09  Score=99.34  Aligned_cols=85  Identities=26%  Similarity=0.307  Sum_probs=62.9

Q ss_pred             CcceEeccCCC--CHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccc
Q 008730          293 KHFTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKI  370 (556)
Q Consensus       293 ~~i~vigDiHG--~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~  370 (556)
                      ++|.+|||+||  +...|.++++...  ...+.+|++||++|+     +++.+|..+.    ..++.++||||...    
T Consensus        23 mri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~----~~v~~V~GNhD~~~----   87 (178)
T 2kkn_A           23 KRFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFS----KEFYGVHGNMDYPD----   87 (178)
T ss_dssp             EEEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHT----SSEEECCCSSSCGG----
T ss_pred             eEEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcC----CCEEEEECCCCcHH----
Confidence            47999999997  7777888887654  234679999999984     7888887763    35999999999753    


Q ss_pred             cCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEeccc
Q 008730          371 YGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL  413 (556)
Q Consensus       371 ~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi  413 (556)
                                           |+..+|....+   +.+++++||..
T Consensus        88 ---------------------~~~~lp~~~~~~~~g~~i~l~HG~~  112 (178)
T 2kkn_A           88 ---------------------VKEHLPFSKVLLVEGVTIGMCHGWG  112 (178)
T ss_dssp             ---------------------GGGTSCSCEEEEETTEEEEECCSCC
T ss_pred             ---------------------HHhhCCcceEEEECCEEEEEECCCC
Confidence                                 23346654333   45799999853

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.89  E-value=8.6e-09  Score=105.80  Aligned_cols=96  Identities=20%  Similarity=0.164  Sum_probs=91.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .++..+..+.++|.+++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|++|++++|++..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 008730           89 GAAYLAMGKFKEALKD  104 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~  104 (556)
                      +.++..++++++|.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.88  E-value=1.2e-08  Score=99.50  Aligned_cols=109  Identities=14%  Similarity=0.042  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CC-ChHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID--PR-YPKGY   85 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~-~~~~~   85 (556)
                      |... ..+.+|..+++.++|++|+.+|+++....+..  ..+++++|.++..+|++++|+.+|++++...  |. .+.++
T Consensus       133 p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~  211 (282)
T 4f3v_A          133 SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIA  211 (282)
T ss_dssp             CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred             CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence            3334 45555555555555555555555444332111  2345555555555555555555555555322  33 34455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      +++|.++..+|+.++|...|++++..+|+ ..+...
T Consensus       212 ~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a  246 (282)
T 4f3v_A          212 WYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence            55555555555555555555555555555 444333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.87  E-value=1.7e-08  Score=81.79  Aligned_cols=68  Identities=22%  Similarity=0.427  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      +.+|.++...|++++|+..|+++++.+|+++. +++.+|.+|..+|++++|+..|+++++++|++..++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            57899999999999999999999999999999 999999999999999999999999999999999987

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.87  E-value=2e-08  Score=107.93  Aligned_cols=132  Identities=14%  Similarity=0.039  Sum_probs=117.3

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ..|+....|..+|..+...|++++|...|+++++.+|.++ .+|..+|.++.+.|++++|+..|++|++..|.....+..
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            3577889999999999999999999999999999999985 699999999999999999999999999999988888887


Q ss_pred             HHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           88 RGAA-YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        88 lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+.+ +...|++++|+..|+++++..|+++.++..++.++...|+  .++|...++
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~--~~~Ar~~~~  449 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE  449 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC--HHHHHHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC--HhhHHHHHH
Confidence            7765 4469999999999999999999999999999998877776  455555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.86  E-value=1.6e-08  Score=101.89  Aligned_cols=123  Identities=8%  Similarity=-0.018  Sum_probs=108.4

Q ss_pred             CChhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-h-CHHHHHHHHHHHHHhCCCChHHH
Q 008730            9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-E-EYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~-g-~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      .+|+...+|..++.++...| .+++++..+++++..+|++..+|..++.++..+ + +++++++.+.++++.+|+|..+|
T Consensus        83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW  162 (349)
T 3q7a_A           83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTW  162 (349)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred             hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHH
Confidence            46778888999999998888 599999999999999999999999999988887 7 88899999999999999999999


Q ss_pred             HHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           86 YRRGAAYLAMGKFK--------EALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        86 ~~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ..++.++...+.++        +++++++++++.+|.|..++...+.+...+++
T Consensus       163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            99999998888877        89999999999999999999998888777654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.85  E-value=1.3e-08  Score=102.61  Aligned_cols=123  Identities=10%  Similarity=0.023  Sum_probs=109.1

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .++-..++..+.......+..++|++.+.++|.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|+.+
T Consensus        50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34444555555555555566678999999999999999999999999999999 59999999999999999999999999


Q ss_pred             HHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           89 GAAYLAM-G-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        89 g~~~~~~-g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      +.++..+ + +++++++.++++++.+|.|..++...+.+...++..
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~  175 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL  175 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            9999998 8 999999999999999999999999999998887763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.85  E-value=1.3e-08  Score=107.93  Aligned_cols=118  Identities=13%  Similarity=0.164  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------C
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------D   78 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~   78 (556)
                      +...+.+..+..+|+|++|+..|++++++.     |++   ..++.++|.+|..+|+|++|+..+++++++        +
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            344556667888999999999999999873     444   567999999999999999999999999976        3


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHhhh
Q 008730           79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAA---QKVKECEKAVKKL  132 (556)
Q Consensus        79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~---~~l~~~~~~~~~~  132 (556)
                      |+-...+.++|.+|..+|++++|+..|++|+++     .|+++.+.   ..++.++..++..
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~  451 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF  451 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence            444668999999999999999999999999986     57776554   5666777666663

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.85  E-value=1.2e-08  Score=104.53  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-----hC
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIE-----ID   78 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~   78 (556)
                      .+..+.++..+|.++...|++++|+++|++++++.+.      .+.++.++|.+|..+|++++|+.+++++++     .+
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence            3456889999999999999999999999999997432      356899999999999999999999999999     78


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhh-hhHHHHhcCCC
Q 008730           79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVKK-LKFEEAIAVPE  142 (556)
Q Consensus        79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~~~~~~~~-~~~~~Ai~~~~  142 (556)
                      |..+.+++.+|.++..+|++++|+.++++++++.+.     .......++.++...+. ..+.+|+...+
T Consensus       258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~  327 (378)
T 3q15_A          258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE  327 (378)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            888999999999999999999999999999999654     23333444444433322 11455555443

>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A

Probab=98.84  E-value=4.5e-08  Score=90.65  Aligned_cols=65  Identities=20%  Similarity=0.233  Sum_probs=45.6

Q ss_pred             CcceEeccCCCCHH--HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          293 KHFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       293 ~~i~vigDiHG~~~--~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ++|.++||+||+..  .+.+.+...-.....+.+|++||++|     .+++.+|..+.    ..+++++||||...
T Consensus        11 m~i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~----~~~~~v~GNhD~~~   77 (192)
T 1z2w_A           11 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDENL   77 (192)
T ss_dssp             CEEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCCT
T ss_pred             eEEEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcC----CCEEEEcCCcCccc
Confidence            46999999999743  23333332211223567999999997     57888877663    36999999999765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.83  E-value=2.4e-08  Score=98.54  Aligned_cols=132  Identities=14%  Similarity=0.105  Sum_probs=108.3

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV------YYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   81 (556)
                      .......+...+..++..|+|++|+..++++++..+..+.      .+..+|.++...+++++|+..+++++.+.+..  
T Consensus        71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~  150 (293)
T 3u3w_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred             cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence            3455666777889999999999999999999998887765      33458888888899999999999999975443  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PN----DPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~----~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                          ..++.++|.+|..+|++++|+.+|+++++..   |.    ...++.+++.++..+++  +++|+....+
T Consensus       151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~  221 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNK  221 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence                3479999999999999999999999999642   12    24578899999998887  7888777663

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=3.5e-08  Score=86.50  Aligned_cols=102  Identities=11%  Similarity=0.093  Sum_probs=92.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHH
Q 008730           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFKEALK  103 (556)
Q Consensus        29 ~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~g~~~~A~~  103 (556)
                      +...+.+.|.+.++.++.+.++.+++|.++.+.+   +.++++..++.+++.+ | +..+++|++|..++++|+|++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4567788899999999999999999999999988   6779999999999999 7 568999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730          104 DFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus       104 ~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +++++++++|+|..+......+.....
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988887766554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.83  E-value=1.9e-08  Score=84.21  Aligned_cols=88  Identities=7%  Similarity=-0.020  Sum_probs=75.9

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGY   85 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~   85 (556)
                      ..+|..+..++.+|.++...|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|.  +..+.
T Consensus        13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (115)
T 2kat_A           13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV   92 (115)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHH
Confidence            3456778999999999999999999999999999999999999999999999999999999999999999875  34444


Q ss_pred             HHHHHHHHHc
Q 008730           86 YRRGAAYLAM   95 (556)
Q Consensus        86 ~~lg~~~~~~   95 (556)
                      ..+...+..+
T Consensus        93 ~~l~~~l~~l  102 (115)
T 2kat_A           93 KELQVFLRRL  102 (115)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4444444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.83  E-value=2.1e-08  Score=87.89  Aligned_cols=103  Identities=20%  Similarity=0.242  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-----
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-----   80 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----   80 (556)
                      ..+..+..+|..+...|++++|+.++++++++.+..      ..++.++|.++...|++++|+..+++++++.+.     
T Consensus        47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  126 (164)
T 3ro3_A           47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI  126 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence            445789999999999999999999999999986553      678999999999999999999999999987432     


Q ss_pred             -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        81 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                       ...++..+|.++...|++++|+..+++++++...
T Consensus       127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             2568999999999999999999999999988654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.78  E-value=4.3e-09  Score=102.75  Aligned_cols=126  Identities=14%  Similarity=0.089  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-C-hHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-Y-PKGYYRRGAA   91 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~-~~~~~~lg~~   91 (556)
                      -.....++..+...|+|++|.+.|..++...|.+. +++.+|.++++.+++++|+..|+++....+. . ..+++++|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45677789999999999999999999999999988 9999999999999999999999988765322 1 3589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           92 YLAMGKFKEALKDFQQVKKLS--PN-DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~--p~-~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +..+|++++|+.+|++++...  |. ..+++..++.++..+|+  .++|...++
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~  232 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLE  232 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999998654  55 56799999999999998  577776665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.78  E-value=2.6e-08  Score=107.04  Aligned_cols=131  Identities=15%  Similarity=0.058  Sum_probs=112.4

Q ss_pred             ChhHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFR-------AKKYS-------QAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~-------~g~~~-------~Al~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      .|..+..|..+|..+..       .|+++       +|+..|++|++ ..|++..+|..+|..+.+.|++++|...|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            35667889999999886       79987       99999999998 89999999999999999999999999999999


Q ss_pred             HHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHhhhhHHHHhcCCC
Q 008730           75 IEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE-KAVKKLKFEEAIAVPE  142 (556)
Q Consensus        75 l~l~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~-~~~~~~~~~~Ai~~~~  142 (556)
                      ++++|.++ .+|..+|.++.+.|++++|++.|++|++..|.....+...+.+. ...|+  .++|...++
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~--~~~A~~~~e  415 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE  415 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC--HHHHHHHHH
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC--hhHHHHHHH
Confidence            99999986 69999999999999999999999999999988777766555442 23343  566666555

>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7

Probab=98.74  E-value=5.5e-09  Score=98.13  Aligned_cols=69  Identities=20%  Similarity=0.318  Sum_probs=57.2

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCC--------ChHHHHHHHHhccccCCCeEEEecccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGS--------FSVEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~--------~s~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      +++++|||+||++..+.++++.+... ..+.+|++||++|+|+        .+.+++.+|..+.    ..+++++||||.
T Consensus        26 mki~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~  100 (208)
T 1su1_A           26 MKLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVA----HKVIAVRGNCDS  100 (208)
T ss_dssp             CEEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTG----GGEEECCCTTCC
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcC----CceEEEECCCch
Confidence            46999999999999999998876422 2367999999999998        4688999988775    369999999997


Q ss_pred             cc
Q 008730          365 KS  366 (556)
Q Consensus       365 ~~  366 (556)
                      ..
T Consensus       101 ~~  102 (208)
T 1su1_A          101 EV  102 (208)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.74  E-value=8e-08  Score=77.66  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           44 NSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        44 ~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                      +|+++.++..+|.+++..++   .++|...++++++++|+++.+++.+|..++..|+|++|+..|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68889999999999876665   78999999999999999999999999999999999999999999999998843

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.73  E-value=2.9e-08  Score=91.26  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=93.2

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCC
Q 008730           24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMGK   97 (556)
Q Consensus        24 ~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~lg~~~~~~g~   97 (556)
                      ++..|++++|.+.++......+..+.++..+|.++...|++++|+..+++++++      .|....++.++|.++..+|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            467899999999665554433367899999999999999999999999999983      44557899999999999999


Q ss_pred             HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           98 FKEALKDFQQVKKL---SPND----PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        98 ~~~A~~~~~~al~l---~p~~----~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +++|+..+++++++   .+++    ..++..++.++...|+  +++|+....
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~  131 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYE  131 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence            99999999999998   4433    4567888999888887  677766655

>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8

Probab=98.71  E-value=4.4e-08  Score=90.94  Aligned_cols=137  Identities=13%  Similarity=0.028  Sum_probs=85.4

Q ss_pred             CcceEeccCCCCHHHH-------------HHHHHhcCC-CCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEe
Q 008730          293 KHFTVCGDVHGQFYDL-------------LNIFELNGL-PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS  358 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l-------------~~~l~~~~~-~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~l  358 (556)
                      ++|++|||+|+....+             .++++.+.. ....+.+|++||++++|+...+++.+|..+.    ..++++
T Consensus         2 ~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~----~~~~~v   77 (195)
T 1xm7_A            2 AMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALP----GRKILV   77 (195)
T ss_dssp             CCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSS----SEEEEE
T ss_pred             cEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCC----CCEEEE
Confidence            5799999999644322             223332221 1245679999999999988888888887764    369999


Q ss_pred             cccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccc---c-CCeEEEEecccccCCCCChhhhhhcccCCCCC
Q 008730          359 RGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV---L-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPP  434 (556)
Q Consensus       359 rGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~---i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~  434 (556)
                      +||||........                    .+..+|-...   + +.+++++||-+ .+.                 
T Consensus        78 ~GNhD~~~~~~~~--------------------~~~~l~~~~~l~~~~~~~i~~~H~~~-~~~-----------------  119 (195)
T 1xm7_A           78 MGNHDKDKESLKE--------------------YFDEIYDFYKIIEHKGKRILLSHYPA-KDP-----------------  119 (195)
T ss_dssp             CCTTCCCHHHHTT--------------------TCSEEESSEEEEEETTEEEEEESSCS-SCS-----------------
T ss_pred             eCCCCCchhhhhh--------------------hhhchhHHHHHHhcCCcEEEEEccCC-cCC-----------------
Confidence            9999985421100                    0122332222   2 34799999743 110                 


Q ss_pred             CccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE
Q 008730          435 EEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI  494 (556)
Q Consensus       435 ~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~  494 (556)
                                .+.    .         +..+.+.+.+.++..+++++|-||.-....+.+
T Consensus       120 ----------~~~----~---------~~~~~~~l~~~~~~~~~~~vi~GHtH~~~~~~~  156 (195)
T 1xm7_A          120 ----------ITE----R---------YPDRQEMVREIYFKENCDLLIHGHVHWNREGIK  156 (195)
T ss_dssp             ----------SCC----S---------CHHHHHHHHHHHHHTTCSEEEECCCCCCSCC--
T ss_pred             ----------Ccc----c---------ccchHHHHHHHHHHcCCcEEEECCcCCCCcccc
Confidence                      000    0         013456788888889999999999987665543

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A

Probab=98.68  E-value=1.6e-07  Score=94.46  Aligned_cols=73  Identities=18%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             CCcceEeccCCC------------CHHHHHHHHHhcCC-CCCCCCeeeecccccCCCCh-HH-HHHHHHhccccCCCeEE
Q 008730          292 GKHFTVCGDVHG------------QFYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFS-VE-VILTLFAFKCMCPSAIY  356 (556)
Q Consensus       292 ~~~i~vigDiHG------------~~~~l~~~l~~~~~-~~~~~~~vflGD~vdrG~~s-~e-~l~~l~~lk~~~p~~v~  356 (556)
                      .++|+++||+|.            ....|.++++.+.- ....+.+|++||++|.|... .+ +..++..+.....-.++
T Consensus        25 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~  104 (330)
T 3ib7_A           25 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV  104 (330)
T ss_dssp             SEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             CeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence            468999999996            26777777776542 12346799999999998642 22 22333333111234599


Q ss_pred             Eecccccc
Q 008730          357 LSRGNHES  364 (556)
Q Consensus       357 ~lrGNHE~  364 (556)
                      +++||||.
T Consensus       105 ~v~GNHD~  112 (330)
T 3ib7_A          105 WVMGNHDD  112 (330)
T ss_dssp             ECCCTTSC
T ss_pred             EeCCCCCC
Confidence            99999996

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.68  E-value=1.3e-07  Score=96.14  Aligned_cols=126  Identities=12%  Similarity=0.038  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------C
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID--------P   79 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p   79 (556)
                      +..+..+|..+...|++++|+..+++++++.|..      ..++.++|.++...|++++|+..+++++++.        |
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  132 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  132 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence            4456666666667777777777777766654432      1235566666777777777777777766653        2


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-----PDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      ....++.++|.++...|++++|+..+++++++.+..     ..++..++.++...|+  +++|....
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l  197 (373)
T 1hz4_A          133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQL  197 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence            234456666777777777777777777777666542     2345556666655555  45554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.65  E-value=1.4e-07  Score=98.35  Aligned_cols=101  Identities=12%  Similarity=0.143  Sum_probs=85.1

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCChHH
Q 008730           21 ANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPRYPKG   84 (556)
Q Consensus        21 g~~~~~~g~~~~Al~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~   84 (556)
                      .......|+|++|+..|++++++     .|++   ..++.++|.+|..+|+|++|+..+++++++        +|+-...
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            44444568999999999999986     3555   567889999999999999999999999976        3444668


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 008730           85 YYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK  121 (556)
Q Consensus        85 ~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~  121 (556)
                      ++++|.+|..+|++++|+..|++|+++     .|+++.+...
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l  426 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI  426 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            999999999999999999999999996     6888776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.61  E-value=3.1e-07  Score=95.85  Aligned_cols=108  Identities=17%  Similarity=0.123  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------   77 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------   77 (556)
                      ++........+..+|+|++|+..|+++++..     |++   ..++.++|.+|..+|+|++|+..+++++++        
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            4555666777889999999999999999863     444   567899999999999999999999999976        


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 008730           78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK  121 (556)
Q Consensus        78 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~  121 (556)
                      +|+-...++++|.+|..+|++++|+..|++|+++     .|+++.+...
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            3344568999999999999999999999999996     6788766544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.60  E-value=5.8e-07  Score=74.13  Aligned_cols=76  Identities=13%  Similarity=-0.030  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      .-++.+|..++..++|..|+.+|++|++..       +..+.++..+|.++.++|++++|+..++++++++|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            344555555555555555555555555542       2345566667777777777777777777777777777666666


Q ss_pred             HHH
Q 008730          122 VKE  124 (556)
Q Consensus       122 l~~  124 (556)
                      ++.
T Consensus        86 ~~~   88 (104)
T 2v5f_A           86 LKY   88 (104)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.59  E-value=1.8e-07  Score=95.21  Aligned_cols=129  Identities=15%  Similarity=0.000  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----   81 (556)
                      ..+..+..+|..+...|++++|+..++++++..|...     .++..+|.++...|++++|+..+++++++.|..     
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   91 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3467788899999999999999999999999987653     367889999999999999999999999886543     


Q ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 -PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                       ..++..+|.++...|++++|+..+++++++.        |....++..++.++...|+  +++|.....
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  159 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASAR  159 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence             2347889999999999999999999999985        3334567788888888877  566655554

>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A

Probab=98.59  E-value=6.6e-07  Score=87.21  Aligned_cols=69  Identities=19%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             CcceEeccCCCCH------------HHHHHHHHhcCCC-CCCCCeeeecccccCCCChH--HHHHHHHhccccCCCeEEE
Q 008730          293 KHFTVCGDVHGQF------------YDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYL  357 (556)
Q Consensus       293 ~~i~vigDiHG~~------------~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~p~~v~~  357 (556)
                      ++|.+++|+|+..            ..|.++++.+.-. +..+.+|++||+++.|....  ++...+..+    +-.++.
T Consensus         1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l----~~p~~~   76 (274)
T 3d03_A            1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSL----NYPLYL   76 (274)
T ss_dssp             CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTC----SSCEEE
T ss_pred             CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhc----CCCEEE
Confidence            3689999999984            6788888766432 23467999999999987432  333344333    234999


Q ss_pred             eccccccc
Q 008730          358 SRGNHESK  365 (556)
Q Consensus       358 lrGNHE~~  365 (556)
                      ++||||..
T Consensus        77 v~GNHD~~   84 (274)
T 3d03_A           77 IPGNHDDK   84 (274)
T ss_dssp             ECCTTSCH
T ss_pred             ECCCCCCH
Confidence            99999974

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.59  E-value=4.1e-07  Score=75.01  Aligned_cols=77  Identities=17%  Similarity=0.157  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   85 (556)
                      ++..++.+|..++..|+|..|+..|++|++..       +..+.++..+|.++.++|++++|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            36789999999999999999999999999974       34578999999999999999999999999999999999998


Q ss_pred             HHHH
Q 008730           86 YRRG   89 (556)
Q Consensus        86 ~~lg   89 (556)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            8887

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.58  E-value=5.4e-07  Score=78.46  Aligned_cols=88  Identities=20%  Similarity=0.108  Sum_probs=46.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA-   94 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-   94 (556)
                      +|..|...+..++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|++|.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            445555555555555555555544  345555555555555    45555555555555544  345555555555555 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 008730           95 ---MGKFKEALKDFQQVKKL  111 (556)
Q Consensus        95 ---~g~~~~A~~~~~~al~l  111 (556)
                         .+++++|+.+|++|.+.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHHC
Confidence               55555555555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.55  E-value=2.9e-07  Score=74.37  Aligned_cols=74  Identities=19%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             ChhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 008730           10 SVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK   83 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   83 (556)
                      +|+++..+..+|.+++..++   .++|...++++++++|+++.++..+|..+++.|+|++|+..|+++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            56788999999999987776   799999999999999999999999999999999999999999999999998543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.54  E-value=1.4e-06  Score=92.59  Aligned_cols=126  Identities=17%  Similarity=0.104  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCh
Q 008730           11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP   82 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~   82 (556)
                      +..+.+++.+|..|..    .+++++|+..|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  111 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP  111 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            3457889999999998    89999999999999886  678999999999999    89999999999999875  578


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hhhHHHHhcCCC
Q 008730           83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE  142 (556)
Q Consensus        83 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~--~~~~~~Ai~~~~  142 (556)
                      .+++.+|.+|..    .+++++|+.+|+++.+.  +++.++..++.++..-.  ..++++|++.++
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  175 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS  175 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            999999999999    88999999999999875  57899999999887621  123566666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.54  E-value=3.4e-07  Score=96.47  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           15 EELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        15 ~~~~~lg~~~~~~g---~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      .+++.+|..+...|   ++++|+..|+++.+..|..+..++++|.+|...    +++++|+.+|+++.   |.++.++++
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            37889999999999   999999999999999999999999999999765    69999999999998   899999999


Q ss_pred             HHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---hhHHHHhcCCCC
Q 008730           88 RGAA-Y--LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK---LKFEEAIAVPES  143 (556)
Q Consensus        88 lg~~-~--~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~---~~~~~Ai~~~~~  143 (556)
                      +|.+ +  ...+++++|+.+|+++.+.  +++.++..++.++. .|.   .++++|+..+.+
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence            9999 4  4689999999999999865  48999999999987 441   247777777663

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.50  E-value=2e-06  Score=91.30  Aligned_cols=123  Identities=11%  Similarity=0.017  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChH
Q 008730           12 SRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPK   83 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~   83 (556)
                      ..+.+++.+|..|..    .+++++|+..|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  148 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS  148 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            346788899999999    99999999999999875  578999999999998    88999999999999876  5789


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730           84 GYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (556)
Q Consensus        84 ~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~  142 (556)
                      +++.+|.+|..    .+++++|+++|+++++.  .++.++..++.++..    .++  +++|+..+.
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~--~~~A~~~~~  211 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERN--DAISAQWYR  211 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcC--HHHHHHHHH
Confidence            99999999998    88999999999999886  578999999998876    333  566666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.50  E-value=2.5e-07  Score=98.10  Aligned_cols=106  Identities=9%  Similarity=0.058  Sum_probs=92.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI-   77 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-   77 (556)
                      ...+|..+..+.++|.+|..+|+|++|+.+|++++++.     |++   +..+.++|.+|..+|+|++|+..|++|+++ 
T Consensus       344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999872     444   567999999999999999999999999975 


Q ss_pred             ----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           78 ----DPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        78 ----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                          .|+.   .+...+++.++..++.+++|...|.++.+..
T Consensus       424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                4554   5567889999999999999999999986544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.48  E-value=1.1e-06  Score=76.47  Aligned_cols=106  Identities=25%  Similarity=0.226  Sum_probs=91.3

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH
Q 008730           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEAL  102 (556)
Q Consensus        27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~  102 (556)
                      .+++++|+..|+++.+.....+.    +|.+|...+..++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46799999999999998755444    999999999999999999999987  679999999999999    89999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730          103 KDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (556)
Q Consensus       103 ~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~  142 (556)
                      .+|++|.+.  .++.+...++.++..    .++  +++|+..+.
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d--~~~A~~~~~  121 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKN--EKQAVKTFE  121 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC--HHHHHHHHH
Confidence            999999987  689999999999876    333  566655544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.39  E-value=6.1e-06  Score=83.01  Aligned_cols=127  Identities=11%  Similarity=-0.003  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH-------HHHHH-HHHH--HHHhCCC
Q 008730           14 AEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-------GSAIQ-DASK--AIEIDPR   80 (556)
Q Consensus        14 a~~~~~lg~~~~~~g---~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~-~~~~--al~l~p~   80 (556)
                      +-.++..|..++..+   ++.+|+.+|++|++++|+++.++..++.+|.....+       .+++. .++.  ++..+|.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            555667788777654   458899999999999999999999988888643211       11111 2221  2356788


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      ++.++..+|.++...|++++|+..+++|+.++|+ ..++..++.++...|+  .++|++.+..
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~--~~eA~e~~~~  335 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM--NREAADAYLT  335 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence            8999998988888889999999999999999874 6777888888888887  4555554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.34  E-value=1.3e-06  Score=91.85  Aligned_cols=123  Identities=15%  Similarity=0.090  Sum_probs=101.8

Q ss_pred             hhHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHhhCHHHHHHHHHHHHHhCCCChH
Q 008730           11 VSRAEELKALANEAFRA----KKYSQAIDLYSQAIELNSQNAVYYANRAFA-H--TKLEEYGSAIQDASKAIEIDPRYPK   83 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~----g~~~~Al~~~~~al~~~p~~~~a~~~lg~~-~--~~~g~~~~A~~~~~~al~l~p~~~~   83 (556)
                      +..+..++.+|..|...    +++++|+..|+++.   |.++.+++++|.+ +  ...+++++|+.+|+++.+..  ++.
T Consensus       210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~  284 (452)
T 3e4b_A          210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPR  284 (452)
T ss_dssp             CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHH
Confidence            44456668899988765    79999999999998   8999999999998 4  46789999999999998654  899


Q ss_pred             HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hhhHHHHhcCCC
Q 008730           84 GYYRRGAAYLAMG-----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE  142 (556)
Q Consensus        84 ~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~--~~~~~~Ai~~~~  142 (556)
                      +++++|.+|. .|     ++++|+.+|++|.   |.++.++..++.++..-.  ..++++|+..+.
T Consensus       285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~  346 (452)
T 3e4b_A          285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLL  346 (452)
T ss_dssp             HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence            9999999998 56     9999999999998   899999999998886521  113566655554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.34  E-value=3e-06  Score=81.90  Aligned_cols=107  Identities=7%  Similarity=-0.016  Sum_probs=93.7

Q ss_pred             CCChhHHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----hCHHHHHH
Q 008730            8 NSSVSRAEELKALANEAFR-----AK------KYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKL-----EEYGSAIQ   69 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~-----~g------~~~~Al~~~~~al~~~p~--~~~a~~~lg~~~~~~-----g~~~~A~~   69 (556)
                      +.+++.++.++-.|.....     .|      ...+|...++++++++|+  +..+|..+|..|...     |+.++|.+
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            4457778888888777754     13      357899999999999999  677999999999995     99999999


Q ss_pred             HHHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 008730           70 DASKAIEIDPRY-PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        70 ~~~~al~l~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~  114 (556)
                      +|++|++++|+. ..+++..|..+.. .|++++|.+.+++|++..|.
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999999975 9999999999988 49999999999999999876

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.28  E-value=8.6e-06  Score=68.68  Aligned_cols=107  Identities=10%  Similarity=0.075  Sum_probs=92.5

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCH
Q 008730           24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKF   98 (556)
Q Consensus        24 ~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~g~~   98 (556)
                      .....+...+...|.+.+..++.+..+.+++|.++.+..+..+   ++..++..+..+ | ..-+.+|.+|..++++|+|
T Consensus        11 ~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           11 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence            3445566778888999999899999999999999999887666   999999998877 5 5678999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      ++|+.+++..|+..|+|..+......+..+..
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999888877765543

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*

Probab=98.28  E-value=2.3e-06  Score=83.87  Aligned_cols=64  Identities=22%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             CCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCCCeEEEecccccccc
Q 008730          292 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       292 ~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ++||++|||+||+...+       ..+ ..|.+|+.||++|+|...  .+++.+|..+.  . ..++++.||||...
T Consensus        59 ~mri~~iSD~H~~~~~l-------~i~-~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~--~-~~v~~V~GNHD~~~  124 (296)
T 3rl5_A           59 HTRFVCISDTRSRTDGI-------QMP-YGDILLHTGDFTELGLPSEVKKFNDWLGNLP--Y-EYKIVIAGNHELTF  124 (296)
T ss_dssp             EEEEEEEBCCTTCCTTC-------CCC-SCSEEEECSCCSSSCCHHHHHHHHHHHHTSC--C-SEEEECCCTTCGGG
T ss_pred             CeEEEEEeeCCCCcchh-------ccC-CCCEEEECCcccCCCCHHHHHHHHHHHHhCC--C-CeEEEEcCCccccc
Confidence            47899999999987643       233 457799999999999742  33455555442  2 35899999999854

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.27  E-value=8e-06  Score=80.64  Aligned_cols=124  Identities=8%  Similarity=-0.012  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYR   87 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~   87 (556)
                      ...+..+|.++...|++++|+..+.+++..+|  .+.+++..++.++.++|+.+.|.+.+++..+.+|+    +-....+
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            44557889999999999999999999998887  78889999999999999999999999999889883    2334455


Q ss_pred             HHHH--HHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730           88 RGAA--YLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (556)
Q Consensus        88 lg~~--~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~  140 (556)
                      ++.+  ....|  ++++|...|+++....|+.......+. ++..+|+  +++|.+.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~--~~eAe~~  233 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN--IAEAQGI  233 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC--HHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC--HHHHHHH
Confidence            5544  66666  899999999998877776333223333 6777776  5665443

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6

Probab=98.24  E-value=2.9e-07  Score=89.20  Aligned_cols=72  Identities=6%  Similarity=0.065  Sum_probs=52.2

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh--------------------------HHHHHHHHh
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--------------------------VEVILTLFA  346 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--------------------------~e~l~~l~~  346 (556)
                      ++|+++||+||+...+.++++.+... ..+.+|++||++|+|+.+                          .+...++..
T Consensus         6 mri~~iSDlH~~~~~~~~~l~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~   84 (260)
T 2yvt_A            6 RKVLAIKNFKERFDLLPKLKGVIAEK-QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE   84 (260)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHHHHHH-CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCCChHHHHHHHHHHHhc-CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHH
Confidence            57999999999999888888765322 346799999999999752                          123334444


Q ss_pred             ccccCCCeEEEecccccccc
Q 008730          347 FKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       347 lk~~~p~~v~~lrGNHE~~~  366 (556)
                      |+. .+..++.++||||...
T Consensus        85 l~~-~~~pv~~v~GNHD~~~  103 (260)
T 2yvt_A           85 IGE-LGVKTFVVPGKNDAPL  103 (260)
T ss_dssp             HHT-TCSEEEEECCTTSCCH
T ss_pred             HHh-cCCcEEEEcCCCCchh
Confidence            432 2346999999999754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.24  E-value=6e-06  Score=95.18  Aligned_cols=119  Identities=12%  Similarity=0.115  Sum_probs=96.1

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----------   80 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----------   80 (556)
                      .+....|.++|.++...|++++|+..|.+|     +++..|...|.++.++|+|++|+++|..|.+..++          
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence            345778999999999999999999999886     88999999999999999999999999887755532          


Q ss_pred             -----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730           81 -----------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus        81 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                                       +...+..+|..+...|+|++|+.+|.+|        ..|..++.++.++++  +++|++...+
T Consensus      1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge--~q~AIEaarK 1246 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE--YQAAVDGARK 1246 (1630)
T ss_pred             HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC--HHHHHHHHHH
Confidence                             2345677888888888888888888876        366777888888777  7888777764


Q ss_pred             C
Q 008730          144 E  144 (556)
Q Consensus       144 ~  144 (556)
                      +
T Consensus      1247 A 1247 (1630)
T 1xi4_A         1247 A 1247 (1630)
T ss_pred             h
Confidence            4

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.19  E-value=2.3e-06  Score=88.40  Aligned_cols=118  Identities=18%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---------------
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---------------   79 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p---------------   79 (556)
                      .+|..+|..++..|.|++|..+|.++        ..|..+|.|+.++|+|++|++.++++.  +|               
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~e  192 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE  192 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCc
Confidence            37888888888888888888888876        467788888888888888888888882  22               


Q ss_pred             ------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           80 ------------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        80 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                                  .+++-...+...|.+.|++++|+..+++++.+++.+...+..++.++.+-+-.+..++++.+.
T Consensus       193 f~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          193 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             HHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                        112222334478889999999999999999999999999999999988777666777777665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.14  E-value=7.5e-06  Score=71.66  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=73.9

Q ss_pred             ChhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730           10 SVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g---~~~~Al~~~~~al~~~-p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   84 (556)
                      .+.+.++.+++|.++.+.+   +.++|+..+++.++.+ | ...++++++|..++++|+|++|+++++++++++|++..+
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            3456889999999999988   7789999999999999 7 568999999999999999999999999999999999888


Q ss_pred             HHHHHHHH
Q 008730           85 YYRRGAAY   92 (556)
Q Consensus        85 ~~~lg~~~   92 (556)
                      ...+..+-
T Consensus       108 ~~Lk~~ie  115 (152)
T 1pc2_A          108 KELERLID  115 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77655543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.11  E-value=1.1e-05  Score=92.88  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---------------
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---------------   79 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p---------------   79 (556)
                      ..+...|..++..|+|++|+.+|.++        ..|..+|.++.++|++++|++.+++|...++               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            45678999999999999999999996        4789999999999999999999999844432               


Q ss_pred             ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           80 ----------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        80 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                                .+++.+..++..|...|.+++|+..+++++.++|.+...+..++.++.+-.-.+..++++.+.
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                      134456677888999999999999999999999999999988998888766666667766665

>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}

Probab=98.05  E-value=4.9e-05  Score=79.62  Aligned_cols=73  Identities=16%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             CCcceEeccCCCC--------------------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHH
Q 008730          292 GKHFTVCGDVHGQ--------------------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILT  343 (556)
Q Consensus       292 ~~~i~vigDiHG~--------------------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~  343 (556)
                      ..+|++++|+|..                          ...+.++++.+... ..+.+|++||+++.|...  .++...
T Consensus        39 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~  117 (443)
T 2xmo_A           39 NLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESK-KTDVLIISGDLTNNGEKTSHEELAKK  117 (443)
T ss_dssp             CEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHH-TCSEEEEESCCBSSCCHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCHHHHHHHHHH
Confidence            4579999999973                          34556666554222 235799999999988743  233334


Q ss_pred             HHhccccCCCeEEEecccccccc
Q 008730          344 LFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       344 l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      +..+. ..+-.++.++||||...
T Consensus       118 l~~l~-~~~~~~~~v~GNHD~~~  139 (443)
T 2xmo_A          118 LTQVE-KNGTQVFVVPGNHDINN  139 (443)
T ss_dssp             HHHHH-HTTCEEEEECCTTTSSC
T ss_pred             HHHHH-hCCCeEEEECCcCCCCC
Confidence            44442 12346999999999854

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.03  E-value=1.5e-05  Score=82.43  Aligned_cols=126  Identities=9%  Similarity=0.040  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      .+....|..+.+.|+|++|++.|.++++..|...                 .++.++|.+|...|++++|++.+.+++..
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3467788899999999999999999999887642                 46889999999999999999999999987


Q ss_pred             CCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           78 DPRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSP------NDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        78 ~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+....      +...++.++...|++++|+..+++++...+      ....++..++.++...|+  +.+|+....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~  159 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ--YKDSLALIN  159 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence            665432      455677888888999999999999988743      235677888888888887  677776654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=2.9e-05  Score=80.21  Aligned_cols=129  Identities=11%  Similarity=0.025  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC------
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDP------   79 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p------   79 (556)
                      ....++..+|..|...|++++|+++|.+++...+...      .+...+|.++...|++++|+..+++++...+      
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            3456789999999999999999999999999876543      3456678888888999999999999987633      


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ....++.++|.+|...|++++|+..+++++...      +....++..++.++..+++  +++|...+.
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~  199 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLT  199 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence            236789999999999999999999999998872      3335678888888888887  566665554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.00  E-value=3.6e-05  Score=75.95  Aligned_cols=118  Identities=12%  Similarity=-0.041  Sum_probs=97.2

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHH--HHHhh--CHHHHHHHHHHHHHhCCC--
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFA--HTKLE--EYGSAIQDASKAIEIDPR--   80 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~~~a~~~lg~~--~~~~g--~~~~A~~~~~~al~l~p~--   80 (556)
                      ....+.+...+.++.+.|+.+.|.+.+++..+.+|+    +-....+++.+  .+..|  ++++|...|+++.+..|+  
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~  212 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK  212 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence            477888999999999999999999999999999983    33445556555  55556  899999999999888886  


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhh
Q 008730           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL----------SPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----------~p~~~~~~~~l~~~~~~~~~  131 (556)
                      .+..+++   ++..+|++++|.+.++++++.          +|+++.++.++..+...+|+
T Consensus       213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            3444454   899999999999999988876          58899999888888777775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.83  E-value=3.4e-05  Score=80.36  Aligned_cols=89  Identities=8%  Similarity=0.007  Sum_probs=73.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (556)
Q Consensus         6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   77 (556)
                      ....+|..+..+.++|.+|..+|+|++|+.+++++++..     |++   +..++++|.+|..+|++++|+..|++|+++
T Consensus       321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999862     444   567999999999999999999999999976


Q ss_pred             -----CCCChH---HHHHHHHHHHH
Q 008730           78 -----DPRYPK---GYYRRGAAYLA   94 (556)
Q Consensus        78 -----~p~~~~---~~~~lg~~~~~   94 (556)
                           .|+.+.   ++.+++.+...
T Consensus       401 ~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          401 MRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHH
Confidence                 455544   44555555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.77  E-value=0.0002  Score=69.27  Aligned_cols=97  Identities=11%  Similarity=0.024  Sum_probs=78.4

Q ss_pred             hCCCCHHHHHHHHHHHHH---h--h------CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHH
Q 008730           43 LNSQNAVYYANRAFAHTK---L--E------EYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAM-----GKFKEALKD  104 (556)
Q Consensus        43 ~~p~~~~a~~~lg~~~~~---~--g------~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~  104 (556)
                      .+|+++++++..|.....   .  |      ....|...+++|+++||+  +..+|..+|..|...     |+.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            467788888888877654   2  2      367899999999999999  677999999999995     999999999


Q ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHHH-hhhhHHHHhcCC
Q 008730          105 FQQVKKLSPND-PDAAQKVKECEKAV-KKLKFEEAIAVP  141 (556)
Q Consensus       105 ~~~al~l~p~~-~~~~~~l~~~~~~~-~~~~~~~Ai~~~  141 (556)
                      |++|++++|+. ..++..++..+... ++  ++++.+..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd--~~~a~~~L  263 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNN--RAGFDEAL  263 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTC--HHHHHHHH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCC--HHHHHHHH
Confidence            99999999975 99999999887653 44  34444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.75  E-value=5.5e-05  Score=78.79  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=68.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-
Q 008730            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-   77 (556)
Q Consensus         7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-   77 (556)
                      ...+|..+..+.++|.+|..+|+|++|+.+|++++++     .|+   -+..++++|.+|..+|+|++|+..|++|+++ 
T Consensus       333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999987     244   4567999999999999999999999999976 


Q ss_pred             ----CCCChHH
Q 008730           78 ----DPRYPKG   84 (556)
Q Consensus        78 ----~p~~~~~   84 (556)
                          .|+.+.+
T Consensus       413 ~~~lG~~Hp~~  423 (433)
T 3qww_A          413 EVAHGKDHPYI  423 (433)
T ss_dssp             HHHTCTTCHHH
T ss_pred             HHHcCCCChHH
Confidence                5666544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.63  E-value=0.0016  Score=55.69  Aligned_cols=86  Identities=9%  Similarity=0.060  Sum_probs=75.3

Q ss_pred             CCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730           45 SQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ  120 (556)
Q Consensus        45 p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  120 (556)
                      .-...+.+++|-++.+..+   ..+++..++..+..+|. .-+.+|.+|..++++|+|++|+.+.+..|+..|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4578899999999998765   55799999999999984 5789999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHh
Q 008730          121 KVKECEKAVK  130 (556)
Q Consensus       121 ~l~~~~~~~~  130 (556)
                      ....+..+..
T Consensus       116 Lk~~Ie~~i~  125 (144)
T 1y8m_A          116 LKSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777765543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.60  E-value=0.00069  Score=57.20  Aligned_cols=97  Identities=9%  Similarity=0.014  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730           34 IDLYSQAIELNSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (556)
Q Consensus        34 l~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al  109 (556)
                      .+.|.+-+ ...-.+.+.+++|-++.+..+   ..+++..++..++.+|. .-+.+|.+|..++++|+|++|+++.+.+|
T Consensus        27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL  105 (134)
T 3o48_A           27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  105 (134)
T ss_dssp             HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34444433 233357889999999988765   55799999999999984 57899999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHhh
Q 008730          110 KLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus       110 ~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      +..|+|..+......+..+..+
T Consensus       106 ~~eP~N~QA~~Lk~~Ie~ki~k  127 (134)
T 3o48_A          106 EHERNNKQVGALKSMVEDKIQK  127 (134)
T ss_dssp             TTCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999998888877766553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.58  E-value=0.00044  Score=60.84  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC--
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEID---PR--   80 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~--   80 (556)
                      .++.+-...++..|.|+.|+-....++.+..++         ..++..+|.+++..++|..|...|++|++..   ++  
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            456778889999999999999999977765333         3478899999999999999999999997652   11  


Q ss_pred             --------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           81 --------------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        81 --------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                                          +.+..|.+|.||.+++++++|+..++..-. .-..+.+...+|++|
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence                                126889999999999999999988775311 123466666666554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.56  E-value=5.7e-05  Score=77.98  Aligned_cols=113  Identities=12%  Similarity=0.082  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------CCCHHHHHHHHHHHHHhhCHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELN---------------------------SQNAVYYANRAFAHTKLEEYGSA   67 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~---------------------------p~~~~a~~~lg~~~~~~g~~~~A   67 (556)
                      ..+...+..+...|+|++|+.+++.+++..                           +.+..+|.++|.++...|+|++|
T Consensus        62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA  141 (449)
T 1b89_A           62 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAA  141 (449)
T ss_dssp             -----------------------------------------------CHHHHTTTTTCC----------------CTTTH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHH
Confidence            345555555555566666665555555321                           12335788899999999999999


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           68 IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        68 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..+|.++        ..|..+|.++.++|++++|++.+++|     .++.+|.....+....++  ++.|.....
T Consensus       142 ~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e--f~lA~~~~l  201 (449)
T 1b89_A          142 KLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE--FRLAQMCGL  201 (449)
T ss_dssp             HHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC--HHHHHHTTT
T ss_pred             HHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc--HHHHHHHHH
Confidence            9999877        47889999999999999999999999     478888888888777776  677755443

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*

Probab=97.54  E-value=7e-05  Score=76.92  Aligned_cols=73  Identities=16%  Similarity=0.142  Sum_probs=50.3

Q ss_pred             CCcceEeccCCCCH-------------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHH----HHHHHHhccccCCCe
Q 008730          292 GKHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE----VILTLFAFKCMCPSA  354 (556)
Q Consensus       292 ~~~i~vigDiHG~~-------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e----~l~~l~~lk~~~p~~  354 (556)
                      .++|++++|+|+..             ..|.++++.+.-. ..+.+|+.||++|++..+.+    +..+|..|+. .+-.
T Consensus        20 ~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~-~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~-~~~p   97 (386)
T 3av0_A           20 HMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEI-KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE-NNIK   97 (386)
T ss_dssp             CCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred             CeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh-cCCc
Confidence            57899999999762             3566777665432 34679999999999954433    3344444432 2346


Q ss_pred             EEEecccccccc
Q 008730          355 IYLSRGNHESKS  366 (556)
Q Consensus       355 v~~lrGNHE~~~  366 (556)
                      |+++.||||...
T Consensus        98 v~~v~GNHD~~~  109 (386)
T 3av0_A           98 VYIVAGNHEMPR  109 (386)
T ss_dssp             EEECCCGGGSCS
T ss_pred             EEEEcCCCCCCc
Confidence            999999999754

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12

Probab=97.53  E-value=3.2e-05  Score=76.75  Aligned_cols=72  Identities=21%  Similarity=0.070  Sum_probs=48.1

Q ss_pred             CcceEeccCCCCH-------------------HHHHHHHHhcCCCCCCCCeeeecccccCCCC----hHHHHHHHHhccc
Q 008730          293 KHFTVCGDVHGQF-------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF----SVEVILTLFAFKC  349 (556)
Q Consensus       293 ~~i~vigDiHG~~-------------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~----s~e~l~~l~~lk~  349 (556)
                      .+|++|+|+|...                   ..|.++++.+.-. ..+.+|++||+++.|..    +.+.+..+...-.
T Consensus         6 ~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~   84 (322)
T 2nxf_A            6 FTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRE-RVQCVVQLGDIIDGHNRRRDASDRALDTVMAELD   84 (322)
T ss_dssp             EEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHH
T ss_pred             eEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCccCCCCCcchHHHHHHHHHHHHHH
Confidence            4699999999875                   5566666654322 34569999999998751    2333333333222


Q ss_pred             cCCCeEEEeccccccc
Q 008730          350 MCPSAIYLSRGNHESK  365 (556)
Q Consensus       350 ~~p~~v~~lrGNHE~~  365 (556)
                      ..+..+++++||||..
T Consensus        85 ~~~~p~~~v~GNHD~~  100 (322)
T 2nxf_A           85 ACSVDVHHVWGNHEFY  100 (322)
T ss_dssp             TTCSEEEECCCHHHHH
T ss_pred             hcCCcEEEecCCCCcc
Confidence            2345799999999985

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A

Probab=97.50  E-value=3.3e-05  Score=77.84  Aligned_cols=73  Identities=23%  Similarity=0.215  Sum_probs=46.2

Q ss_pred             CCCcceEeccCC-C----C-----------HHHHHHHHHhcCCCCCCCCeeeecc-cccCCCChHHH----HHHHHhccc
Q 008730          291 DGKHFTVCGDVH-G----Q-----------FYDLLNIFELNGLPSEENPYLFNGD-FVDRGSFSVEV----ILTLFAFKC  349 (556)
Q Consensus       291 ~~~~i~vigDiH-G----~-----------~~~l~~~l~~~~~~~~~~~~vflGD-~vdrG~~s~e~----l~~l~~lk~  349 (556)
                      ..++|+.++|+| |    .           ...|.++++.+.-. ..+.+|+.|| ++|++..+.+.    ..+|..|..
T Consensus        17 ~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~   95 (336)
T 2q8u_A           17 KELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMR   95 (336)
T ss_dssp             CEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHh
Confidence            357899999999 8    3           34556666544322 2356999999 99999877664    445555542


Q ss_pred             cCCCeEEEecccccccc
Q 008730          350 MCPSAIYLSRGNHESKS  366 (556)
Q Consensus       350 ~~p~~v~~lrGNHE~~~  366 (556)
                      .  -.|+++.||||...
T Consensus        96 ~--~pv~~i~GNHD~~~  110 (336)
T 2q8u_A           96 T--APVVVLPGNHDWKG  110 (336)
T ss_dssp             H--SCEEECCC------
T ss_pred             c--CCEEEECCCCCccc
Confidence            2  25999999999754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.47  E-value=0.0013  Score=72.35  Aligned_cols=121  Identities=13%  Similarity=0.029  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------NSQ-----------NAVYYANRAFAHTKLEEYGSAI   68 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----------~p~-----------~~~a~~~lg~~~~~~g~~~~A~   68 (556)
                      |.....|...+......|++++|...|++++..           .|.           ...+|...+....+.|+.+.|.
T Consensus       375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR  454 (679)
T 4e6h_A          375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR  454 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence            445667888899999999999999999999985           253           3567889999888999999999


Q ss_pred             HHHHHHHHh-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           69 QDASKAIEI-DPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        69 ~~~~~al~l-~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ..|.+|++. .+.....|...|.+....++ ++.|.+.|+++++..|+++..+..++......++
T Consensus       455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~  519 (679)
T 4e6h_A          455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE  519 (679)
T ss_dssp             HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC
Confidence            999999988 55567888888887777654 8999999999999999999998888877766665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.46  E-value=0.0019  Score=55.64  Aligned_cols=109  Identities=17%  Similarity=0.036  Sum_probs=94.8

Q ss_pred             ChhHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKY------SQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAI   75 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~------~~Al~~~~~al~~~p~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~al   75 (556)
                      .|++.+.|.......-+.|+.      ++-++.|++|+..-|..        ...|...|.. ...++.++|.+.|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            567788999999999988999      89999999999987753        4556667754 67799999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      .+....+..|...|..-.++|+...|++.+.+|+.+.|...+.+
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            99888999999999999999999999999999999999876654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.44  E-value=0.00057  Score=68.70  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           40 AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        40 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                      ++..+|.++.++..+|..+...|++++|+..+++|+.++|+ +.+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            44678999999999999999999999999999999999974 778899999999999999999999999999998753

>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A

Probab=97.42  E-value=9.2e-05  Score=74.44  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=46.8

Q ss_pred             CcceEeccCCCCH-------------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHH----HHHhccccCCCeE
Q 008730          293 KHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAI  355 (556)
Q Consensus       293 ~~i~vigDiHG~~-------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~----~l~~lk~~~p~~v  355 (556)
                      ++|++++|+|+..             ..|.++++.+.-. ..+.+|+.||++|++..+.+.+.    ++..++. .+-.|
T Consensus         1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~-~~~~v   78 (333)
T 1ii7_A            1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE-HSIPV   78 (333)
T ss_dssp             CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT-TTCCE
T ss_pred             CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhc-CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH-CCCcE
Confidence            4689999999864             3455555544322 23579999999999854544333    3333331 22459


Q ss_pred             EEeccccccc
Q 008730          356 YLSRGNHESK  365 (556)
Q Consensus       356 ~~lrGNHE~~  365 (556)
                      +++.||||..
T Consensus        79 ~~v~GNHD~~   88 (333)
T 1ii7_A           79 FAIEGNHDRT   88 (333)
T ss_dssp             EEECCTTTCC
T ss_pred             EEeCCcCCCc
Confidence            9999999975

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.39  E-value=0.00097  Score=73.33  Aligned_cols=81  Identities=12%  Similarity=0.001  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730           31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI-QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (556)
Q Consensus        31 ~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  109 (556)
                      +.....|++++...|.++..|...+..+...|+.++|. ..|++|+...|.+...|+.++......|++++|.+.|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34556677777777777777777777666667666675 77777777777776667777777777777777777777776


Q ss_pred             Hh
Q 008730          110 KL  111 (556)
Q Consensus       110 ~l  111 (556)
                      ..
T Consensus       406 ~~  407 (679)
T 4e6h_A          406 DR  407 (679)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.21  E-value=0.0011  Score=55.80  Aligned_cols=81  Identities=14%  Similarity=0.110  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQ---AIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~---Al~~~~~al~~~-p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ...++.+++|.++.+..+..+   ++..++..++.+ | ..-++++.+|..++++|+|++|..+++..++.+|+|..+.-
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            557888999999998887777   999999999987 5 56788999999999999999999999999999999988877


Q ss_pred             HHHHHH
Q 008730           87 RRGAAY   92 (556)
Q Consensus        87 ~lg~~~   92 (556)
                      ....+-
T Consensus       113 Lk~~i~  118 (126)
T 1nzn_A          113 LERLID  118 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.90  E-value=0.0076  Score=50.85  Aligned_cols=82  Identities=9%  Similarity=-0.015  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           12 SRAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ..+++.++.|..+.+..+-   .+++..++..++.+|. .-+.++.+|..++++|+|++|..+++.+++.+|+|..+.-.
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3568889999999888755   4699999999999984 57889999999999999999999999999999999888766


Q ss_pred             HHHHHH
Q 008730           88 RGAAYL   93 (556)
Q Consensus        88 lg~~~~   93 (556)
                      ...+-.
T Consensus       118 k~~Ie~  123 (134)
T 3o48_A          118 KSMVED  123 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.89  E-value=0.017  Score=60.99  Aligned_cols=118  Identities=8%  Similarity=-0.103  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA---------------------------------   57 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~---------------------------------   57 (556)
                      |..+..|...+..+...|+.++|...|++|+.. |.+...|...+..                                 
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  288 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL  288 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence            334667777777778888888888888888888 8775554433332                                 


Q ss_pred             -------HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           58 -------HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        58 -------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                             ..+.++.+.|...|.+| +..+.....|...|......+ +.+.|...|+++++..|+++..+..+.......
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence                   12345566666666666 322224455555555555444 466677777777776666666554444444444


Q ss_pred             h
Q 008730          130 K  130 (556)
Q Consensus       130 ~  130 (556)
                      +
T Consensus       368 ~  368 (493)
T 2uy1_A          368 G  368 (493)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.85  E-value=0.011  Score=50.54  Aligned_cols=82  Identities=9%  Similarity=0.005  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYS---QAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~---~Al~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ....++.+++|..+.+..+-+   +++..++..++.+|. .-+.++.+|..++++|+|++|..+++..++.+|+|..+.-
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            456788999999999887655   699999999999885 5688999999999999999999999999999999988776


Q ss_pred             HHHHHH
Q 008730           87 RRGAAY   92 (556)
Q Consensus        87 ~lg~~~   92 (556)
                      ....+-
T Consensus       116 Lk~~Ie  121 (144)
T 1y8m_A          116 LKSMVE  121 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C

Probab=96.80  E-value=0.00028  Score=72.17  Aligned_cols=69  Identities=20%  Similarity=0.180  Sum_probs=45.7

Q ss_pred             CcceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccc-cCCCChHHHHH----HHHhccccC
Q 008730          293 KHFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFV-DRGSFSVEVIL----TLFAFKCMC  351 (556)
Q Consensus       293 ~~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~v-drG~~s~e~l~----~l~~lk~~~  351 (556)
                      ++|+.++|+|....                .|.++++.+.-. ..+.+|+.||++ |++..+.+.+.    ++..|+.. 
T Consensus         1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~-~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~-   78 (379)
T 3tho_B            1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-   78 (379)
T ss_dssp             CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHH-TCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH-
T ss_pred             CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhc-CCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC-
Confidence            46899999996543                445555443222 235699999999 98877655443    33334322 


Q ss_pred             CCeEEEecccccc
Q 008730          352 PSAIYLSRGNHES  364 (556)
Q Consensus       352 p~~v~~lrGNHE~  364 (556)
                       -.|+++.||||.
T Consensus        79 -~~v~~i~GNHD~   90 (379)
T 3tho_B           79 -APVVVLPGNQDW   90 (379)
T ss_dssp             -SCEEECCCTTSC
T ss_pred             -CCEEEEcCCCcc
Confidence             359999999994

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.76  E-value=0.0039  Score=54.85  Aligned_cols=81  Identities=22%  Similarity=0.161  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C-------------------CCHHHHHHHHHHHHHhhCHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------S-------------------QNAVYYANRAFAHTKLEEYG   65 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~------p-------------------~~~~a~~~lg~~~~~~g~~~   65 (556)
                      ...++.+..+|+.++..++|.+|+..|++||...      +                   .+.+..+.++.||.++++++
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            4567899999999999999999999999998652      1                   12378899999999999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           66 SAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        66 ~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      +|+..++..-... ..++.-..+|..|
T Consensus       140 ~Ai~~Le~Ip~k~-Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGIPSRQ-RTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTSCGGG-CCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCchh-cCHHHHHHHHHHh
Confidence            9999987643222 4677878888765

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*

Probab=96.69  E-value=0.00098  Score=69.09  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=38.5

Q ss_pred             CCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHH
Q 008730          292 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF  345 (556)
Q Consensus       292 ~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~  345 (556)
                      .++|+.++|+|-.            ...|.++++.+.-. ..+.+|+.||++|++..+.+++..++
T Consensus        76 ~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~ps~~a~~~~~  140 (472)
T 4fbk_A           76 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQAL  140 (472)
T ss_dssp             CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCSBSSSSCCHHHHHHHH
T ss_pred             CeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHH
Confidence            4579999999963            33566666655332 34679999999999999888766443

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*

Probab=96.65  E-value=0.0013  Score=67.54  Aligned_cols=55  Identities=16%  Similarity=0.252  Sum_probs=39.9

Q ss_pred             CCCCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHH
Q 008730          290 PDGKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF  345 (556)
Q Consensus       290 ~~~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~  345 (556)
                      .+..+++.++|+|-.            ...|.++++.+.-. ..+.+|+.||++|++..+.+++..++
T Consensus        11 ~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~p~~~~~~~~~   77 (417)
T 4fbw_A           11 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQAL   77 (417)
T ss_dssp             TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHH
T ss_pred             CCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHH
Confidence            345789999999964            34566666655332 34679999999999999887766543

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}

Probab=96.62  E-value=0.00081  Score=69.36  Aligned_cols=55  Identities=24%  Similarity=0.265  Sum_probs=38.6

Q ss_pred             CCCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHh
Q 008730          291 DGKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA  346 (556)
Q Consensus       291 ~~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~  346 (556)
                      +.++|+.++|+|-.            ...|.++++.+.-. ..+.+|+.||++|++..+.+++..++.
T Consensus        31 ~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~-~~D~VliaGDlfd~~~~~~~~~~~~~~   97 (431)
T 3t1i_A           31 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQEN-EVDFILLGGDLFHENKPSRKTLHTCLE   97 (431)
T ss_dssp             GEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHH
T ss_pred             CCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhc-CCCEEEEcCccccCCCCCHHHHHHHHH
Confidence            34689999999943            23556666544332 345799999999999888777665544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.41  E-value=0.045  Score=55.81  Aligned_cols=99  Identities=18%  Similarity=0.104  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYGSAIQ   69 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~a~~~lg~~~~~~g~~~~A~~   69 (556)
                      ...+.+...|......|+.++|...+++|+.+....                      ..+...++.++...|++++|+.
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            344556666777778899999999999999985321                      1224456677788899999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730           70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (556)
Q Consensus        70 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  110 (556)
                      .+++++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus       193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999988999999999999999999998887754

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*

Probab=96.38  E-value=0.0013  Score=64.80  Aligned_cols=73  Identities=16%  Similarity=0.004  Sum_probs=41.3

Q ss_pred             CCcceEeccCCCCH---------HHHHHHHHh-cCCCCCCCCeeeecccccC-CC---ChHHHHHHHHhccc---cCCCe
Q 008730          292 GKHFTVCGDVHGQF---------YDLLNIFEL-NGLPSEENPYLFNGDFVDR-GS---FSVEVILTLFAFKC---MCPSA  354 (556)
Q Consensus       292 ~~~i~vigDiHG~~---------~~l~~~l~~-~~~~~~~~~~vflGD~vdr-G~---~s~e~l~~l~~lk~---~~p~~  354 (556)
                      ..+++++||+|+..         ..+.+.+.. +.. ...+.+|++||+++. |.   ...+....+..+..   ..+-.
T Consensus         6 ~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~-~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p   84 (313)
T 1ute_A            6 ILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKT-LGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVP   84 (313)
T ss_dssp             CEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHH-HCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCC
T ss_pred             ceEEEEEcccCCCCCccccCchHHHHHHHHHHHHHh-cCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCC
Confidence            45799999999863         234333332 111 123569999999753 11   12233333322211   11356


Q ss_pred             EEEeccccccc
Q 008730          355 IYLSRGNHESK  365 (556)
Q Consensus       355 v~~lrGNHE~~  365 (556)
                      ++.+.||||..
T Consensus        85 ~~~v~GNHD~~   95 (313)
T 1ute_A           85 WHVLAGNHDHL   95 (313)
T ss_dssp             EEECCCHHHHH
T ss_pred             EEEECCCCccC
Confidence            99999999974

>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*

Probab=96.18  E-value=0.0043  Score=64.29  Aligned_cols=71  Identities=18%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCCh-------HHHHHHHHhccccCCCeEEEecccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s-------~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      .+++++||+|....... .++.+. .....+-+|++||+++.+...       -+...++..+....  -++.+.||||.
T Consensus       120 ~~f~~igD~~~~~~~~~-~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~~~--P~~~v~GNHD~  196 (424)
T 2qfp_A          120 YTFGLIGDLGQSFDSNT-TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQ--PWIWTAGNHEI  196 (424)
T ss_dssp             EEEEEECSCTTBHHHHH-HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHTTS--CEEECCCHHHH
T ss_pred             eEEEEEEeCCCCCChHH-HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHhcC--CeEeecCCccc
Confidence            47999999998865542 334332 222346799999999864211       11223333333333  48889999997


Q ss_pred             cc
Q 008730          365 KS  366 (556)
Q Consensus       365 ~~  366 (556)
                      ..
T Consensus       197 ~~  198 (424)
T 2qfp_A          197 EF  198 (424)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.98  E-value=0.15  Score=53.82  Aligned_cols=115  Identities=11%  Similarity=-0.017  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~   91 (556)
                      ....|...+....+.++.+.|...|.+| ...+.....|...|......+ +.+.|...|+.+++..|+.+..+...+..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3466788888888889999999999999 444446677777777777667 59999999999999999999988888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      ....|+.+.|...|+++    +.....+..........|..
T Consensus       364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~  400 (493)
T 2uy1_A          364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSM  400 (493)
T ss_dssp             HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCH
T ss_pred             HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCH
Confidence            89999999999999998    45677777777776666653

>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1

Probab=95.74  E-value=0.0076  Score=62.47  Aligned_cols=71  Identities=15%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCC-----h-HH-HHHHHHhccccCCCeEEEecccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSF-----S-VE-VILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~-----s-~e-~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      .+++++||+|...... +.++.+. ....-+-+|++||+++.+..     . .+ ....+..+....  -++.+.||||.
T Consensus       127 ~~f~~~gD~~~~~~~~-~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~~~--P~~~v~GNHD~  203 (426)
T 1xzw_A          127 YVFGLIGDIGQTHDSN-TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQ--PWIWTAGNHEI  203 (426)
T ss_dssp             EEEEEECSCTTBHHHH-HHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTS--CEECCCCGGGC
T ss_pred             eEEEEEEeCCCCCchH-HHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHhcC--CEEEecccccc
Confidence            5799999999875322 2222221 11234569999999965321     1 11 223333333333  48889999998


Q ss_pred             cc
Q 008730          365 KS  366 (556)
Q Consensus       365 ~~  366 (556)
                      ..
T Consensus       204 ~~  205 (426)
T 1xzw_A          204 DY  205 (426)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.15  E-value=0.1  Score=54.72  Aligned_cols=80  Identities=9%  Similarity=0.008  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      .+..+|........++.|..+|.+|..+.|++..++..+|.+....|+.-+|+-+|-+++......+.+..++.......
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            45667888888888999999999999999999999999999999999999999999999999888899999998876543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.07  E-value=0.049  Score=60.02  Aligned_cols=59  Identities=10%  Similarity=0.129  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV  108 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  108 (556)
                      .+..-+..+...|+|+-|+...++|+...|....+|+.|+.+|..+|+|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445666778999999999999999999999999999999999999999999877765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.01  E-value=0.35  Score=50.97  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAAY   92 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~   92 (556)
                      ..|..+-..+.+.|++++|++.|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..-. +...|..+-.++
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345555555666666666666666555432 224555555555566666666666666655543211 344555555566


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 008730           93 LAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l  111 (556)
                      .+.|+.++|.+.+++.-+.
T Consensus       186 ~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHHHHh
Confidence            6666666666666655443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.96  E-value=0.54  Score=41.20  Aligned_cols=99  Identities=13%  Similarity=0.063  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--h---------------C
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--I---------------D   78 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l---------------~   78 (556)
                      .-..++..++-.|+|..|+-.+.     .-+...+.+..+.||.++++|..|+..+++.+.  .               |
T Consensus        35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd  109 (242)
T 3kae_A           35 YRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD  109 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred             HHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence            34556778888899988886654     345577778889999999999999999999883  2               2


Q ss_pred             CCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           79 PRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        79 p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      |.+-+ .+..+|.++.+.|+-+||+.++......+|-.+.+-
T Consensus       110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence            33434 455668899999999999999999999888655543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.83  E-value=0.25  Score=46.89  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=57.9

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 008730           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK   83 (556)
Q Consensus        22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   83 (556)
                      ..+++.|+.++|++.....++.+|.++.....+-..+.-.|+++.|...++.+.+++|+...
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            45678999999999999999999999999999999999999999999999999999998644

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}

Probab=94.55  E-value=0.0097  Score=59.61  Aligned_cols=69  Identities=9%  Similarity=0.023  Sum_probs=41.5

Q ss_pred             CcceEeccCCCCHHHH-------HHHHHhcCCCCCCCCeeeecccccCCCChH------HHHHHHHhcc-ccCCCeEEEe
Q 008730          293 KHFTVCGDVHGQFYDL-------LNIFELNGLPSEENPYLFNGDFVDRGSFSV------EVILTLFAFK-CMCPSAIYLS  358 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l-------~~~l~~~~~~~~~~~~vflGD~vdrG~~s~------e~l~~l~~lk-~~~p~~v~~l  358 (556)
                      -++++|||.|.-...-       .++.+.    ..-+-+|++||+++.|..+.      +.+.-++... ....--++.+
T Consensus         4 l~f~~igD~g~g~~~q~~va~~m~~~~~~----~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~v   79 (342)
T 3tgh_A            4 LRFASLGDWGKDTKGQILNAKYFKQFIKN----ERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTV   79 (342)
T ss_dssp             EEEEECCSCBSCCHHHHHHHHHHHHHHHH----TTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEEC
T ss_pred             EEEEEEecCCCCCchHHHHHHHHHHHHhh----cCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEe
Confidence            3689999999754322       222322    12356999999998887532      2332222211 1223357999


Q ss_pred             ccccccc
Q 008730          359 RGNHESK  365 (556)
Q Consensus       359 rGNHE~~  365 (556)
                      .||||..
T Consensus        80 lGNHD~~   86 (342)
T 3tgh_A           80 LGTRDWT   86 (342)
T ss_dssp             CCHHHHT
T ss_pred             CCCCccC
Confidence            9999976

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.40  E-value=0.12  Score=57.03  Aligned_cols=61  Identities=23%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      ...+...+..+..+|+|+-|+++.++|+...|.+-..|+.|+.||..+|+|+.|+-.++.+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3456667888889999999999999999999999999999999999999999999776654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.39  E-value=0.17  Score=53.04  Aligned_cols=80  Identities=20%  Similarity=0.137  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      +.+..+|+...-...++.|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|.+++......+.+.-++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999998877789999999887765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.38  E-value=1.2  Score=46.77  Aligned_cols=113  Identities=11%  Similarity=0.065  Sum_probs=91.0

Q ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008730           28 KKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAYLAMGKFKEALKDF  105 (556)
Q Consensus        28 g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~  105 (556)
                      +..++|.+.|++..+.. .-+...|..+-.+|.+.|+.++|.+.+++..+.. .-+...|..+-..|.+.|+.++|.+.|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            34788999999877654 2367889999999999999999999999988753 225778888999999999999999999


Q ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          106 QQVKKLSP-NDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       106 ~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++..+..- -+...+..+-.++.+.|+  .++|.+++.
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~--~d~A~~ll~  199 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALLKVSMDTKN--ADKVYKTLQ  199 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhCCC--HHHHHHHHH
Confidence            99988642 246777788888888777  677766654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.34  E-value=0.23  Score=42.81  Aligned_cols=98  Identities=14%  Similarity=0.049  Sum_probs=74.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008730           42 ELNSQNAVYYANRAFAHTKLEEY------GSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQ  107 (556)
Q Consensus        42 ~~~p~~~~a~~~lg~~~~~~g~~------~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~  107 (556)
                      -+.|++++.|........+.|+.      ++-++.|++|+..-|-        +...|.+.|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35799999999999999888998      8889999999987664        34567777754 567999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       108 al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ++.+....+.+|...|+...+.++  ..+|..+..
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgn--l~kARkILg  118 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGN--VKKSKQLLQ  118 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            999977776677666666665555  566655443

>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}

Probab=93.89  E-value=0.021  Score=60.85  Aligned_cols=67  Identities=24%  Similarity=0.323  Sum_probs=43.6

Q ss_pred             CcceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCCh----------HHHHHHHHh
Q 008730          293 KHFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS----------VEVILTLFA  346 (556)
Q Consensus       293 ~~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s----------~e~l~~l~~  346 (556)
                      .+|+.++|+||++.                .+..+++...-......+|..||.+++++.+          ..++..|-.
T Consensus        20 l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~ln~   99 (527)
T 3qfk_A           20 IAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNR   99 (527)
T ss_dssp             EEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             EEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHHHh
Confidence            35899999999863                5566666554332333456679999987553          355666655


Q ss_pred             ccccCCCeEEEecccccc
Q 008730          347 FKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       347 lk~~~p~~v~~lrGNHE~  364 (556)
                      +.   ++  ++..||||.
T Consensus       100 lg---~D--~~t~GNHef  112 (527)
T 3qfk_A          100 MA---FD--FGTLGNHEF  112 (527)
T ss_dssp             TC---CC--EECCCGGGG
T ss_pred             cC---Cc--EEecccccc
Confidence            53   22  455899994

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.92  E-value=0.45  Score=45.22  Aligned_cols=65  Identities=18%  Similarity=0.091  Sum_probs=59.4

Q ss_pred             HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        57 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      .+++.|+.++|++.+...++.+|.+......+...++-.|+++.|.+.++.+.+++|+.......
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~   70 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ   70 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999997665433

>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A

Probab=92.59  E-value=0.031  Score=59.37  Aligned_cols=66  Identities=18%  Similarity=0.106  Sum_probs=41.9

Q ss_pred             cceEeccCCCCHH----------HHHHHHHhcCCC----CCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCe
Q 008730          294 HFTVCGDVHGQFY----------DLLNIFELNGLP----SEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSA  354 (556)
Q Consensus       294 ~i~vigDiHG~~~----------~l~~~l~~~~~~----~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~  354 (556)
                      +|+.++|+||.+.          .+..++++..-.    ...+.+|..||+++..+.+     ..++..|-.+.   ++ 
T Consensus        10 ~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg---~d-   85 (516)
T 1hp1_A           10 TVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG---YD-   85 (516)
T ss_dssp             EEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHT---CC-
T ss_pred             EEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhccC---CC-
Confidence            5899999999743          355555443211    1234688999999765432     35555555553   22 


Q ss_pred             EEEecccccc
Q 008730          355 IYLSRGNHES  364 (556)
Q Consensus       355 v~~lrGNHE~  364 (556)
                       ++..||||.
T Consensus        86 -~~~~GNHEf   94 (516)
T 1hp1_A           86 -AMAIGNHEF   94 (516)
T ss_dssp             -EEECCGGGG
T ss_pred             -EEeeccccc
Confidence             566899997

>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*

Probab=92.32  E-value=0.06  Score=57.54  Aligned_cols=66  Identities=21%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             cceEeccCCCCH--------------------HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhcc
Q 008730          294 HFTVCGDVHGQF--------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFK  348 (556)
Q Consensus       294 ~i~vigDiHG~~--------------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk  348 (556)
                      +|+.++|+||++                    ..+..+++...-......+|+.||.++..+.+     ..++..|-.+.
T Consensus        27 ~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ln~lg  106 (546)
T 4h2g_A           27 TILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALR  106 (546)
T ss_dssp             EEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHT
T ss_pred             EEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHHHhcC
Confidence            489999999864                    44556665543222234688899999987543     44555655554


Q ss_pred             ccCCCeEEEecccccc
Q 008730          349 CMCPSAIYLSRGNHES  364 (556)
Q Consensus       349 ~~~p~~v~~lrGNHE~  364 (556)
                         ++  ++..||||.
T Consensus       107 ---~d--~~~~GNHEf  117 (546)
T 4h2g_A          107 ---YD--AMALGNHEF  117 (546)
T ss_dssp             ---CS--EEECCGGGG
T ss_pred             ---Cc--EEeccCccc
Confidence               22  456899995

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.22  E-value=0.5  Score=47.99  Aligned_cols=62  Identities=10%  Similarity=-0.046  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   76 (556)
                      .+...++..+...|++++|+..+++++..+|-+-.+|..+-.+++..|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45556778889999999999999999999999999999999999999999999999988754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.76  E-value=1.3  Score=44.77  Aligned_cols=94  Identities=15%  Similarity=-0.005  Sum_probs=75.0

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CCC----hHHH
Q 008730           19 ALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEID---PRY----PKGY   85 (556)
Q Consensus        19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~----~~~~   85 (556)
                      .+|..|+..|+|.+|++.+.+.++.-..      -.+.+......|..++++.++...+.+|....   +.+    ....
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            7899999999999999999998875322      13556677888999999999999999997553   122    3456


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 008730           86 YRRGAAYL-AMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        86 ~~lg~~~~-~~g~~~~A~~~~~~al~l~  112 (556)
                      ..-|..+. ..++|++|..+|-.+++-.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            66788888 8999999999999997643

>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2

Probab=91.69  E-value=0.1  Score=55.91  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=43.1

Q ss_pred             cceEeccCCCCH-----------------HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccC
Q 008730          294 HFTVCGDVHGQF-----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMC  351 (556)
Q Consensus       294 ~i~vigDiHG~~-----------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~  351 (556)
                      +|+.++|+||++                 ..+..++++..-...+..++..||++++.+.+     ..++..+-.+.   
T Consensus        31 ~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~lg---  107 (552)
T 2z1a_A           31 TLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRLR---  107 (552)
T ss_dssp             EEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHTT---
T ss_pred             EEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHhcC---
Confidence            589999999863                 45666665543222233578899999986542     35555555553   


Q ss_pred             CCeEEEeccccccc
Q 008730          352 PSAIYLSRGNHESK  365 (556)
Q Consensus       352 p~~v~~lrGNHE~~  365 (556)
                      ++  ++..||||..
T Consensus       108 ~d--~~~lGNHEfd  119 (552)
T 2z1a_A          108 YR--AMALGNHEFD  119 (552)
T ss_dssp             CC--EEECCGGGGT
T ss_pred             CC--cccccccccc
Confidence            22  5568999964

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.06  E-value=1.7  Score=44.70  Aligned_cols=100  Identities=11%  Similarity=-0.086  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCCh----HHH
Q 008730           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYP----KGY   85 (556)
Q Consensus        15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~----~~~   85 (556)
                      .++..+|..+++.|++++|++.|.++......   -.+.+.....++...+++..+...+.++-.+-  ..++    ...
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            45678999999999999999999998876433   35778888888999999999999999997652  2232    344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~  114 (556)
                      ...|.++...++|.+|...|..++.....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            55677788899999999999988776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.03  E-value=1.6  Score=48.19  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=36.1

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      ..+...|++++|.+..+..     ++...|..+|..+.+.++++.|+.+|.++
T Consensus       660 ~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456778888888776642     56778888888888888888888888775

>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*

Probab=90.08  E-value=0.15  Score=54.79  Aligned_cols=66  Identities=17%  Similarity=0.055  Sum_probs=41.4

Q ss_pred             cceEeccCCCCHH---------------------HHHHHHHhcCCCCCCCCeeeecccccCCC-----ChHHHHHHHHhc
Q 008730          294 HFTVCGDVHGQFY---------------------DLLNIFELNGLPSEENPYLFNGDFVDRGS-----FSVEVILTLFAF  347 (556)
Q Consensus       294 ~i~vigDiHG~~~---------------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~-----~s~e~l~~l~~l  347 (556)
                      +|+.++|+||++.                     .+..+++...-...+..+|..||.++..+     ....++..|-.+
T Consensus        14 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~l   93 (579)
T 3ztv_A           14 SILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVMNAG   93 (579)
T ss_dssp             EEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHHHHHH
T ss_pred             EEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHHHHhc
Confidence            4899999999853                     34555554432222335788899998663     234455555555


Q ss_pred             cccCCCeEEEecccccc
Q 008730          348 KCMCPSAIYLSRGNHES  364 (556)
Q Consensus       348 k~~~p~~v~~lrGNHE~  364 (556)
                      .   ++  ++..||||.
T Consensus        94 g---~D--~~tlGNHEf  105 (579)
T 3ztv_A           94 N---FH--YFTLGNHEF  105 (579)
T ss_dssp             T---CS--EEECCSGGG
T ss_pred             C---cC--eeecccccc
Confidence            4   22  355799995

>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9

Probab=89.96  E-value=0.11  Score=50.02  Aligned_cols=70  Identities=19%  Similarity=0.120  Sum_probs=44.1

Q ss_pred             CCcceEeccCCCCHH--HHHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          292 GKHFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       292 ~~~i~vigDiHG~~~--~l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      .++|..+|||||...  .+...+.+..-....+.++..||-.--| +.+..+...|..+..    .+.. .||||.-.
T Consensus         4 ~m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~~~~~~ln~~G~----Da~T-lGNHefD~   76 (281)
T 1t71_A            4 SIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV----NYIT-MGNHTWFQ   76 (281)
T ss_dssp             CCEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTC----CEEE-CCTTTTCC
T ss_pred             eEEEEEECCcCChHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCHHHHHHHHhcCC----CEEE-EccCcccC
Confidence            357999999999752  2333344332111124577888877555 557788888877763    3344 59999754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=88.99  E-value=6.3  Score=44.67  Aligned_cols=100  Identities=8%  Similarity=-0.009  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGY   85 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~   85 (556)
                      ..-..+..+-..+.+.|+.++|.+.|.+.-+.    -.-+...|+.+-..|.+.|+.++|.+.|++-.+.  .| +...|
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY  203 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence            33456888999999999999999999764432    2446889999999999999999999999998775  34 57788


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 008730           86 YRRGAAYLAMGK-FKEALKDFQQVKKLS  112 (556)
Q Consensus        86 ~~lg~~~~~~g~-~~~A~~~~~~al~l~  112 (556)
                      ..+-.++.+.|+ .++|.+.|++..+..
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            888889999998 578999999998875

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.63  E-value=7  Score=40.21  Aligned_cols=100  Identities=16%  Similarity=0.142  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH---hCCCC-
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQ-----NAVYYANRAFAHTKLEEYGSAIQDASKAIE---IDPRY-   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~-   81 (556)
                      ..++....++..+...|++.+|...+.....- ...     -.+.+......+...+++..|...++++..   -.+.. 
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            46777889999999999999999998887642 111     145677778889999999999999999742   23333 


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (556)
Q Consensus        82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  111 (556)
                         ...+...|..+...++|.+|-.+|..++..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               346777899999999999999999999875

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.52  E-value=12  Score=32.78  Aligned_cols=69  Identities=10%  Similarity=-0.062  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------CCCCHHH-HHHHHHHHHHhhCHHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------------NSQNAVY-YANRAFAHTKLEEYGSAIQDASK   73 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----------------~p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~   73 (556)
                      +++.+.+-.+.++.+.++|.+|+..+++.++-                 +|.+.+. +..+|....+.|+.++|+.++..
T Consensus        60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~  139 (242)
T 3kae_A           60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR  139 (242)
T ss_dssp             CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence            45677788899999999999999999999932                 3455554 45568999999999999999999


Q ss_pred             HHHhCCC
Q 008730           74 AIEIDPR   80 (556)
Q Consensus        74 al~l~p~   80 (556)
                      ....+|-
T Consensus       140 Sf~~~~l  146 (242)
T 3kae_A          140 SFGKSFL  146 (242)
T ss_dssp             HHHHCCC
T ss_pred             hcCCccc
Confidence            9887764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.87  E-value=1.9  Score=47.69  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=67.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008730           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK   97 (556)
Q Consensus        18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   97 (556)
                      ......+.+.|.+++|++..+        ++...+.   .....|++++|.+.++     ..++...|-.+|..+.+.++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~---~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQKFE---LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHHHH---HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchhee---hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence            455566677788888876553        3333333   3467899999998764     34678899999999999999


Q ss_pred             HHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHhh
Q 008730           98 FKEALKDFQQVK--------KLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        98 ~~~A~~~~~~al--------~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++.|+.+|.++-        ....++.+....++......++
T Consensus       697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~  738 (814)
T 3mkq_A          697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK  738 (814)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            999999999862        2235566665566555444433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.49  E-value=4.6  Score=35.74  Aligned_cols=47  Identities=9%  Similarity=-0.040  Sum_probs=40.9

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      .....|+++.|.+..++.     ++...|..+|......|+++-|..+|+++
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            447889999999887764     67889999999999999999999999886

>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*

Probab=87.33  E-value=0.22  Score=52.64  Aligned_cols=65  Identities=15%  Similarity=0.302  Sum_probs=37.9

Q ss_pred             cceEeccCCCCH------------------HHHHHHHHhcCCCCCCCCeee-ecccccCCCC-----hHHHHHHHHhccc
Q 008730          294 HFTVCGDVHGQF------------------YDLLNIFELNGLPSEENPYLF-NGDFVDRGSF-----SVEVILTLFAFKC  349 (556)
Q Consensus       294 ~i~vigDiHG~~------------------~~l~~~l~~~~~~~~~~~~vf-lGD~vdrG~~-----s~e~l~~l~~lk~  349 (556)
                      +|+.++|+||++                  ..+..+++...-... +.+++ .||.++..+.     ...++..|-.+. 
T Consensus         8 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~~-~~llldaGD~~~g~~~~~~~~g~~~~~~ln~lg-   85 (509)
T 3ive_A            8 TIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNK-ATWFFDAGDYFTGPYISSLTKGKAIIDIMNTMP-   85 (509)
T ss_dssp             EEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCS-SEEEEECSCCSSSSHHHHTTTTHHHHHHHTTSC-
T ss_pred             EEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcCC-CeEEEECCCCCCCchhhhhcCChHHHHHHHhcC-
Confidence            489999999874                  345555554432222 33444 8999984322     234555554443 


Q ss_pred             cCCCeEEEecccccc
Q 008730          350 MCPSAIYLSRGNHES  364 (556)
Q Consensus       350 ~~p~~v~~lrGNHE~  364 (556)
                        ++  ++..||||.
T Consensus        86 --~D--~~tlGNHEf   96 (509)
T 3ive_A           86 --FD--AVTIGNHEF   96 (509)
T ss_dssp             --CS--EECCCGGGG
T ss_pred             --Cc--EEeeccccc
Confidence              22  445799994

>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}

Probab=86.83  E-value=0.3  Score=48.66  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             cceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCChH-------------HHHHHH
Q 008730          294 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-------------EVILTL  344 (556)
Q Consensus       294 ~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-------------e~l~~l  344 (556)
                      +|+-+.|+||++.                .+..++++..-...+..+|..||.+...+.+.             .++..+
T Consensus        10 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs~~~~~~~~~~~~~g~~~p~~~~m   89 (339)
T 3jyf_A           10 RIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVYKAM   89 (339)
T ss_dssp             EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSSHHHHHHHHHCCCTTCCCHHHHHH
T ss_pred             EEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCchhHHhhhhcccccccchHHHHHH
Confidence            3899999999863                34445554432223345788999997544321             345555


Q ss_pred             HhccccCCCeEEEeccccccc
Q 008730          345 FAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       345 ~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      -.+.   . .+ +..||||.-
T Consensus        90 n~lg---~-D~-~t~GNHEfd  105 (339)
T 3jyf_A           90 NTLN---Y-AV-GNLGNHEFN  105 (339)
T ss_dssp             TTSC---C-SE-EECCGGGGT
T ss_pred             HhcC---C-CE-Eecchhhhh
Confidence            4443   2 23 346999953

>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}

Probab=86.49  E-value=0.37  Score=47.99  Aligned_cols=67  Identities=18%  Similarity=0.275  Sum_probs=39.7

Q ss_pred             cceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCChH-----------------HH
Q 008730          294 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----------------EV  340 (556)
Q Consensus       294 ~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-----------------e~  340 (556)
                      +|+-+.|+||++.                .+..+++...-...+..+|..||.+...+.+.                 .+
T Consensus        13 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs~~~~~~~~~~~~~g~~~g~~~~~   92 (341)
T 3gve_A           13 SILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHPI   92 (341)
T ss_dssp             EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHHHHHHHHHHHHHHHHTSSCCHH
T ss_pred             EEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCcHHHHHhhhcccccccccccccHH
Confidence            3899999999863                34445544332222334677899997654321                 24


Q ss_pred             HHHHHhccccCCCeEEEeccccccc
Q 008730          341 ILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       341 l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      +..+-.+..   + + +..||||.-
T Consensus        93 ~~~ln~lg~---D-a-~tlGNHEfd  112 (341)
T 3gve_A           93 ISVMNALKY---D-A-GTLGNHEFN  112 (341)
T ss_dssp             HHHHHHTTC---C-B-EECCGGGGT
T ss_pred             HHHHHhhCC---C-e-eeccchhhc
Confidence            555555542   2 2 347999964

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.12  E-value=9.4  Score=38.51  Aligned_cols=99  Identities=10%  Similarity=0.057  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------CCCHH------------------HH--
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN----------------------SQNAV------------------YY--   51 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~----------------------p~~~~------------------a~--   51 (556)
                      -.+...+|..|.+.|++++-.+.+......-                      |+...                  .|  
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999998776665543221                      22211                  12  


Q ss_pred             ----HHHHHHHHHhhCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730           52 ----ANRAFAHTKLEEYGSAIQDASKAIEI----DPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (556)
Q Consensus        52 ----~~lg~~~~~~g~~~~A~~~~~~al~l----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  112 (556)
                          ..+|..|+..|+|.+|+..+.+..+-    |..  -.+.+..-..+|..++++.++...|.+|....
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence                26799999999999999999888763    211  25677888889999999999999999997764

>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A

Probab=84.43  E-value=0.26  Score=52.69  Aligned_cols=36  Identities=17%  Similarity=0.016  Sum_probs=24.5

Q ss_pred             CeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEecccccc
Q 008730          323 PYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       323 ~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      .+|..||++++.+.+     ..++.++-.+.  + + + +. ||||.
T Consensus       126 Lll~~GD~~~gs~~~~~~~g~~~~~~ln~lg--~-d-~-~~-GNHEf  166 (562)
T 2wdc_A          126 LVLDGGDTWTNSGLSLLTRGEAVVRWQNLVG--V-D-H-MV-SHWEW  166 (562)
T ss_dssp             EEEECSCCSSSSHHHHHHTTHHHHHHHHHHT--C-C-E-EC-CSGGG
T ss_pred             EEEeCCCCCCcchhhhhhCCHHHHHHHHhhC--C-c-E-Ee-cchhc
Confidence            588999999976543     35566665554  3 2 3 46 99995

>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2

Probab=84.30  E-value=0.4  Score=51.19  Aligned_cols=69  Identities=17%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             CcceEeccCCCCHH----------------HHHHHHHhcC-CCCCCCCeeeecccccCCC-------ChHHHHHHHHhcc
Q 008730          293 KHFTVCGDVHGQFY----------------DLLNIFELNG-LPSEENPYLFNGDFVDRGS-------FSVEVILTLFAFK  348 (556)
Q Consensus       293 ~~i~vigDiHG~~~----------------~l~~~l~~~~-~~~~~~~~vflGD~vdrG~-------~s~e~l~~l~~lk  348 (556)
                      .+|+.++|+||++.                .+...++... -...+..+|..||.++..+       ....++..|-.+.
T Consensus        16 l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~ln~lg   95 (557)
T 3c9f_A           16 INFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQD   95 (557)
T ss_dssp             EEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSCHHHHSSSSTTTTTHHHHTTSC
T ss_pred             EEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCCccchhhcccCCHHHHHHHHhcC
Confidence            45899999999742                3333444311 0111224789999997644       2224555555554


Q ss_pred             ccCCCeEEEecccccccc
Q 008730          349 CMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       349 ~~~p~~v~~lrGNHE~~~  366 (556)
                         .+  ++..||||.-.
T Consensus        96 ---~D--a~tlGNHEfD~  108 (557)
T 3c9f_A           96 ---YD--LLTIGNHELYL  108 (557)
T ss_dssp             ---CS--EECCCGGGSSS
T ss_pred             ---CC--EEeecchhccc
Confidence               22  44579999753

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.73  E-value=1  Score=47.08  Aligned_cols=102  Identities=12%  Similarity=0.033  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHH----------HHHHHHHh-----CCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAID----------LYSQAIEL-----NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~----------~~~~al~~-----~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   76 (556)
                      .+..|+..+..+-..|+..+...          .+-.+++.     |+. .+..++.+-..|...+.|+.|.....++. 
T Consensus       180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-  258 (523)
T 4b4t_S          180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-  258 (523)
T ss_dssp             -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence            34556655565656665554321          22222222     222 25567778889999999999999999985 


Q ss_pred             hCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730           77 IDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (556)
Q Consensus        77 l~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  116 (556)
                       .|..       ...+|.+|.++.-.++|.+|.+++..|++..|.+.
T Consensus       259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence             4432       56788899999999999999999999999988654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.42  E-value=9.6  Score=33.69  Aligned_cols=83  Identities=13%  Similarity=0.022  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      ....|..+|...+..|+++-|..+|+++-.        +..+...|.-.|+.+.-....+.+.... +    +.....++
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~----~n~af~~~   99 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRE-D----FGSMLLNT   99 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCc-c----HHHHHHHH
Confidence            456799999999999999999999998533        2345566667777665544444443333 2    12234567


Q ss_pred             HHcCCHHHHHHHHHHH
Q 008730           93 LAMGKFKEALKDFQQV  108 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~a  108 (556)
                      ..+|+++++++.|.+.
T Consensus       100 l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B          100 FYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHTCHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHC
Confidence            7899999999888655

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.42  E-value=6.2  Score=45.92  Aligned_cols=93  Identities=14%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------
Q 008730           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---------------------   77 (556)
Q Consensus        19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------------------   77 (556)
                      .+...+...+.++-|.+    .+...|.++...+.+|.++...|++++|.++|++|..-                     
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34455666777765543    44567888888899999999999999999999887311                     


Q ss_pred             --CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           78 --DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        78 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                        ....+..|+.....+.+.+.++.+++.-+.|++..+.+
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~  932 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD  932 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence              11124567777788889999999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	556
d1s95a_	324	d.159.1.3 (A:) Serine/threonine protein phosphatas	1e-143
d1auia_	473	d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calc	1e-106
d3c5wc1	288	d.159.1.3 (C:6-293) Protein phosphatase 2A catalyt	1e-100
d1jk7a_	294	d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human	4e-94
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-27
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	9e-25
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-21
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-17
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-17
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-16
d1g5ba_	219	d.159.1.3 (A:) lambda ser/thr protein phosphatase	2e-16
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-15
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-13
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-11
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-05
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-10
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	7e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-06
d1nnwa_	251	d.159.1.5 (A:) Hypothetical protein PF1291 {Archae	2e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	6e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-08
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	5e-08
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	7e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-05
d1su1a_	184	d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia	0.001
d1wr0a1	77	a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS	0.003
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	0.003

>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Serine/threonine protein phosphatase 5, PP5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  413 bits (1062), Expect = e-143
 Identities = 192/322 (59%), Positives = 246/322 (76%)

Query: 234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 293
           YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+  + + +
Sbjct: 1   YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60

Query: 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 353
             TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF FK + P 
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120

Query: 354 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 413
             +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV ++HGGL
Sbjct: 121 HFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGL 180

Query: 414 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 473
           FS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   FG DVTK FL
Sbjct: 181 FSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240

Query: 474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVT 533
           ++N+LD ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQMGNK ++I  +   L+P    
Sbjct: 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQ 300

Query: 534 FAAVPHPDVKPMAYANNFLRMF 555
           F AVPHP+VKPMAYAN  L++ 
Sbjct: 301 FTAVPHPNVKPMAYANTLLQLG 322

>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 473

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-2B (PP-2B, calcineurin A subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  325 bits (835), Expect = e-106
 Identities = 121/321 (37%), Positives = 174/321 (54%), Gaps = 27/321 (8%)

Query: 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 308
           V  +      +  L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL
Sbjct: 30  VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDL 85

Query: 309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368
           + +FE+ G P+    YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + 
Sbjct: 86  MKLFEVGGSPANTR-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLT 144

Query: 369 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 428
           + + F+ E + K SE   +   + F CLPLA ++NQ+   VHGGL   +   L DI+ +D
Sbjct: 145 EYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSP-EINTLDDIRKLD 203

Query: 429 RFCEPPEEGLMCELLWSDPQPLPGR--------GPSKRGVGLSFGADVTKRFLQDNSLDL 480
           RF EPP  G MC++LWSDP    G           + RG    +       FLQ N+L  
Sbjct: 204 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263

Query: 481 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 534
           ++R+HE +D GY +    +      LIT+FSAPNY D   NK A +++E      NI  F
Sbjct: 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV--MNIRQF 321

Query: 535 AAVPHPDVKPMAYANNFLRMF 555
              PHP         NF+ +F
Sbjct: 322 NCSPHPYWL-----PNFMDVF 337

>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  302 bits (775), Expect = e-100
 Identities = 111/291 (38%), Positives = 165/291 (56%), Gaps = 8/291 (2%)

Query: 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 308
           + + ++     K L +     +  + +E+L    ++ ++  P     TVCGDVHGQF+DL
Sbjct: 5   LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDL 60

Query: 309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368
           + +F + G   + N YLF GD+VDRG +SVE +  L A K      I + RGNHES+ + 
Sbjct: 61  MELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQIT 119

Query: 369 KIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTI 427
           ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL       L  I+ +
Sbjct: 120 QVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSP-SIDTLDHIRAL 178

Query: 428 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 487
           DR  E P EG MC+LLWSDP    G G S RG G +FG D+++ F   N L LV R+H++
Sbjct: 179 DRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQL 238

Query: 488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP 538
             EGY   HD  ++T+FSAPNYC + GN+ A +  +  TLK + + F   P
Sbjct: 239 VMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELD-DTLKYSFLQFDPAP 288

>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-1 (PP-1)
species: Human (Homo sapiens), beta isoform [TaxId: 9606]

 Score =  287 bits (735), Expect = 4e-94
 Identities = 111/277 (40%), Positives = 167/277 (60%), Gaps = 8/277 (2%)

Query: 259 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 318
              L +     + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P
Sbjct: 22  NVQLQENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFP 77

Query: 319 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 378
             E+ YLF GD+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E +
Sbjct: 78  -PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECK 136

Query: 379 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 438
            + +    + F + F CLP+A ++++K+F  HGGL   D   +  I+ I R  + P++GL
Sbjct: 137 RRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSP-DLQSMEQIRRIMRPTDVPDQGL 195

Query: 439 MCELLWSDPQPLP-GRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHD 497
           +C+LLWSDP     G G + RGV  +FGA+V  +FL  + LDL+ R+H+V ++GYE    
Sbjct: 196 LCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAK 255

Query: 498 GKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 534
            +L+T+FSAPNYC +  N GA +  +  TL  +    
Sbjct: 256 RQLVTLFSAPNYCGEFDNAGAMMSVD-ETLMCSFQIL 291

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 3e-27
 Identities = 79/156 (50%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS 66
            + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG 
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           A+ DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC 
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122

Query: 127 KAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPS 162
           K VK+  FE AIA  E +R SV DS+D +S+ +   
Sbjct: 123 KIVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDE 157

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.7 bits (247), Expect = 9e-25
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+           +   A++  K
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG--DDIPSALRIAK 121

Query: 134 FEEAIAVPESERHSVAD 150
            +   ++ E   H  ++
Sbjct: 122 KKRWNSIEERRIHQESE 138

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 3e-09
 Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 25  FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
              + Y +AI    +A  L  +  + + +   +  ++ +          +IE    + + 
Sbjct: 83  LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW-----NSIEERRIHQES 137

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
                   L   + +  L++ Q+  +   +D     +    E    K
Sbjct: 138 ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 1e-21
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +A + K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 73  KAIEIDPRYPKGY-------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           KAIE+     + Y        R G +Y    K+K+A+  + +        PD  +K ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121

Query: 126 EKAVKK 131
           EK +K+
Sbjct: 122 EKILKE 127

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 9e-05
 Identities = 15/99 (15%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           + A+          K +++ +A++   KA E+DP        + A Y   G + +  +  
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 106 QQVKKLSPNDPDAAQKVKECE----KAVKKL-KFEEAIA 139
           ++  ++   + +  +++ +       +  K  K+++AI 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 4e-17
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A     LA   +       AID Y +AIEL       Y N A A  +      A    + 
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A+ + P +              G  +EA++ +++  ++ P    A   +    +     K
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--K 354

Query: 134 FEEAIA 139
            +EA+ 
Sbjct: 355 LQEALM 360

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 25/105 (23%), Positives = 45/105 (42%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            +    LAN        ++A D Y+ A+ L   +A    N A    +      A++   K
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+E+ P +   +    +     GK +EAL  +++  ++SP   DA
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 13/79 (16%), Positives = 25/79 (31%)

Query: 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
             LA+  ++A  +  A     Q       N       +  H +      +   ++ AI+
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 77 IDPRYPKGYYRRGAAYLAM 95
           +P   + Y   G  Y   
Sbjct: 62 QNPLLAEAYSNLGNVYKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 3e-15
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            +    L N    A+ + +A+  Y +A+ L+  +AV + N A  + +      AI    +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AIE+ P +P  Y     A    G   EA   +    +L P   D+   +   ++  ++  
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR--EQGN 320

Query: 134 FEEAIA 139
            EEA+ 
Sbjct: 321 IEEAVR 326

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LAN         +A+ LY +A+E+  + A  ++N A    +  +   A+    +AI I P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 80  RYPKGYYRRGAAYLAMG 96
            +   Y   G     M 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 2/129 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A     L        +   AI  + +A+ L+      Y N      +   +  A+    +
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A+ + P +   +      Y   G    A+  +++  +L P+ PDA   +    K  +K  
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK--EKGS 286

Query: 134 FEEAIAVPE 142
             EA     
Sbjct: 287 VAEAEDCYN 295

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 6e-11
 Identities = 6/66 (9%), Positives = 19/66 (28%)

Query: 53  NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
             A    +  ++ +A +   +    +P          + +    +   +        K +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 113 PNDPDA 118
           P   +A
Sbjct: 64  PLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96
           Y +AIE     AV ++N         E   AI    KA+ +DP +   Y   G       
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217

Query: 97  KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
            F  A+  + +   LSPN       +            + AI 
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG--LIDLAID 258

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH 58
             L  L++  F+ ++  ++    + AI+ N   A  Y+N    +
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
           A     LA+   +  K  +A+  Y +AI ++   A  Y+N      +++
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 84  GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
           G           G F+ A +   Q+ +  P++      +       +  + + +  
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR--RLDRSAH 54

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 76.5 bits (187), Expect = 5e-17
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQA---------------IELNSQNAVYYANRAFA 57
           +A  +K      F+  KY QA+  Y +                    S     + N A  
Sbjct: 14  QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           + KL EY  A++   KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  
Sbjct: 74  YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133

Query: 118 AAQKVKECEKAVKKLKFEEA 137
           A  ++  C+K  K+    + 
Sbjct: 134 ARLQIFMCQKKAKEHNERDR 153

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 8e-17
 Identities = 36/115 (31%), Positives = 63/115 (54%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +  ELK   N+A        A+  YS+AI+L+  N V Y+NR+ A+ K  +Y  A +D  
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           K +++ P + KGY R+ AA   + +F+EA + +++  K   N+P   + ++  E 
Sbjct: 62  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 1e-16
 Identities = 29/151 (19%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQA----------------IELNS 45
            +++  +  +  +E+LK + N  F+++ +  AI  Y++                  +L  
Sbjct: 15  VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 74

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
                  N      K+ ++  A+    +A+EIDP   K  YRR   +  + ++ +AL D 
Sbjct: 75  VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 134

Query: 106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
           ++ ++++P D     ++ + ++ +K  K +E
Sbjct: 135 KKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]} Length = 219

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: lambda ser/thr protein phosphatase
species: Bacteriophage lambda [TaxId: 10710]

 Score = 76.4 bits (187), Expect = 2e-16
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 287 IDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 346
           ID    ++  V GD+HG + +L+N  +  G  ++++  +  GD VDRG+ +VE +     
Sbjct: 7   IDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL----- 61

Query: 347 FKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR------------SKLSETFVELFAEVFC 394
            + +        RGNHE   ++ +                        E   +  A    
Sbjct: 62  -ELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKAD 120

Query: 395 CLPLAHVL---NQKVFVVHGGLFSVD 417
            LPL   L   ++K  + H      +
Sbjct: 121 ELPLIIELVSKDKKYVICHADYPFDE 146

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 72.3 bits (176), Expect = 1e-15
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQ----------------AIELNSQNAV 49
           T+   V  A ++K   NE F+  + ++AI  Y +                  +  +    
Sbjct: 9   TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 68

Query: 50  YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
              N A  + K ++Y  AI  ASK ++ID    K  Y+ G A +  G  +EA ++  +  
Sbjct: 69  CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128

Query: 110 KLSPNDPDAAQKVKECEKAVKKLK 133
            L+PN+ D     + C   +K+ +
Sbjct: 129 SLNPNNLDIRNSYELCVNKLKEAR 152

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 69.7 bits (170), Expect = 6e-14
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80
              A    +  QA++L  +AI+ + ++A   ++         ++  A +   ++I++ P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 81  YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
           Y  G  +      A    K+  +     K L  N+      V     ++    +E+   
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV-SFNLSMVSQDYEQVSE 120

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 7e-14
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69
           S+  A  L      A   K +  A+D +S   + +S+      N    +T L+    A +
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEK 57

Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
             +++I  D      Y++RG  Y    K+  A+KD ++       +     K
Sbjct: 58  AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 109

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 12/132 (9%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
                       + +       EA    + +Q ID     ++          N AF + K
Sbjct: 73  YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 132

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
            EE+  A +  + A  +                   K  +A++   + K   P      +
Sbjct: 133 KEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEPVVIPVGR 180

Query: 121 KVKECEKAVKKL 132
             +  E+ V +L
Sbjct: 181 LFRPNERQVAQL 192

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 1e-13
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQA---------------IELNSQNAVYYANRAFA 57
           ++  +K      F+  KY QA+  Y +                 +  +     + N A  
Sbjct: 12  QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 71

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           H KL+ + +AI+  +KA+E+D    KG  RRG A+LA+  F+ A  DFQ+V +L PN+  
Sbjct: 72  HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131

Query: 118 AAQKVKECEKAVKKLKFEEA 137
           A  ++  C++ +++    E 
Sbjct: 132 AKTQLAVCQQRIRRQLAREK 151

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 4e-11
 Identities = 11/105 (10%), Positives = 28/105 (26%), Gaps = 2/105 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
             +   L   + +    S  +   S +     Q+     +         +   A      
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRH 177

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A ++ P   + Y +      + G     +  + +   +    P A
Sbjct: 178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 15/143 (10%), Positives = 31/143 (21%), Gaps = 40/143 (27%)

Query: 32  QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--------- 82
           Q+     QA  L +         A   T  +      Q   K +  D  Y          
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQDL 60

Query: 83  --KGYYRRGAAY------------------------LAMGKFKEALKDFQQVKKLSPNDP 116
               +  +                             A G + + L++   V  +     
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 117 DAAQKVKECEKAVKKLKFEEAIA 139
             + ++       K+      + 
Sbjct: 121 VKSSQLGIISN--KQTHTSAIVK 141

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 7/91 (7%), Positives = 15/91 (16%), Gaps = 3/91 (3%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYAN---RAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
             +   I       +  +             F       Y   +Q+      +D      
Sbjct: 63  HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVK 122

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
             + G            +K            
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQH 153

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 17/92 (18%), Positives = 32/92 (34%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
                L  L + A    + SQA   Y  A +L   N   Y   A   +   ++ + I   
Sbjct: 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
            ++I +   +P        A     + ++ +K
Sbjct: 210 CRSIAVKFPFPAASTNLQKALSKALESRDEVK 241

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 7/74 (9%), Positives = 21/74 (28%), Gaps = 7/74 (9%)

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           + Q   +A  +              + +    ++    +Q++              K+ E
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALD----KKVE 57

Query: 127 KAVKKLKFEEAIAV 140
           + +    F+  I  
Sbjct: 58  QDLWNHAFKNQITT 71

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (141), Expect = 3e-10
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 14/135 (10%)

Query: 4   METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-------YYANRAF 56
              + S     +     A+      +Y +A D+YS+ I+ +  N +       Y+  +  
Sbjct: 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207

Query: 57  AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA-------MGKFKEALKDFQQVK 109
                 +  +A +   +    DP +           L          +  E  K+F    
Sbjct: 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267

Query: 110 KLSPNDPDAAQKVKE 124
           +L         K+KE
Sbjct: 268 RLDKWKITILNKIKE 282

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 12/115 (10%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA----- 91
           +    +  + +   +   A       +Y  A    SK I+         +          
Sbjct: 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206

Query: 92  --YLAMGKFKEALKDFQQVKKLSPNDPDA-----AQKVKECEKAVKKLKFEEAIA 139
              LA      A +  Q+ +   PN  D+      + + +        +  E   
Sbjct: 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 17/142 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
           A+     A      K+ + A D + +A +   +          Y              +A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAM-------GKFKEALKDFQQVKKLSPNDPDAAQ 120
           +     AI+I     +        +            + +A+  ++   +    D   A 
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 121 KVKECEKA----VKKLKFEEAI 138
             K   K         ++ EA 
Sbjct: 157 SNKCFIKCADLKALDGQYIEAS 178

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 1/122 (0%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           E EN      +  +       +      A+ L+  A++ + ++   +        + E+ 
Sbjct: 11  EEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 69

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
             AI    + +E+ P           ++      ++A +  +   + +P         +E
Sbjct: 70  LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 129

Query: 125 CE 126
             
Sbjct: 130 GA 131

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 16/99 (16%), Positives = 41/99 (41%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L      + +Y +A+D ++ A+ +   + + +           +   A+    +A+E+ P
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            Y +  Y  G + + +G  +EA++ F +   +       
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 4/105 (3%)

Query: 22  NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
                  +  +A+  Y +A+EL         N   +   L  +  A++   +A+ +  + 
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273

Query: 82  PKGYYRRGAAYL----AMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
                  GA        +      L            D      +
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 318

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 251

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Phosphoesterase-related
domain: Hypothetical protein PF1291
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 6/84 (7%)

Query: 297 VCGDVHGQFYDLLNIFELNGLPSEENP----YLFNGDFVDRGSFSVEVILTLFAFKCMCP 352
           V  ++ G    L           EE      Y   G+ V    +  EVI  +        
Sbjct: 5   VLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKEN 64

Query: 353 SAIYLSRGNHESKSMNKIYGFEGE 376
             + + RG ++             
Sbjct: 65  --VKIIRGKYDQIIAMSDPHATDP 86

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 15/105 (14%)

Query: 41  IELNSQNAVYYANRAFAHTKLEEYGSAI---QDASK----AIEIDPRYPKGYYRRGAAYL 93
           + L+S + V Y +R        E+       Q+        I    ++   Y    A   
Sbjct: 2   VSLDSPSYVLYRDR-------AEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQ 54

Query: 94  AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
              + + A K  +   +L+  +       +   K+++K    E +
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-DLHEEM 98

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 40  AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-F 98
            I  + +    Y        + E    A +    AIE++      ++ R     ++ K  
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 99  KEALKDFQQVKKLSPNDPD 117
            E +     + +  P +  
Sbjct: 95  HEEMNYITAIIEEQPKNYQ 113

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 7e-07
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYY 86
           ++  +A  L   AIELN+ N   +  R      L++     +   +  IE  P+  + ++
Sbjct: 57  ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116

Query: 87  RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
            R      +    + L+    +      + 
Sbjct: 117 HRRVLVEWLRDPSQELEFIADILNQDAKNY 146

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 6e-05
 Identities = 10/124 (8%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
                   +  SQ ++  +  +  +++N   + +R +   + + + + +Q   + ++ D 
Sbjct: 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 177

Query: 80  RYPKGYYRRGAAYLAMGK---FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
           R    + +R                 ++ Q   ++    P         +  ++     +
Sbjct: 178 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 237

Query: 137 AIAV 140
              +
Sbjct: 238 YPNL 241

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 11/100 (11%), Positives = 30/100 (30%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
            LA +    K+  + +  + +  +                ++         DA+    + 
Sbjct: 146 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA 205

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
               +  +  G  YL++G    A   F+     + ++   
Sbjct: 206 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 55  AFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110
           A       +    +    + +      D    +  Y RG  Y ++G    A  DF Q   
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 111 LSPNDPDA 118
           + P+ P+ 
Sbjct: 66  IRPDMPEV 73

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIE----LNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           + LA       +    +    Q +      + + A     R   +  L     A  D S+
Sbjct: 3   EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ 62

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           A+ I P  P+ +   G      G F  A + F  V +L P 
Sbjct: 63  ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 103

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 26/126 (20%), Positives = 50/126 (39%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           RA+ L             + A + +SQA+ +       +       T+   + +A +   
Sbjct: 36  RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
             +E+DP Y   +  RG A    G+ K A  D     +  PNDP  +  +   E+ + + 
Sbjct: 96  SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 155

Query: 133 KFEEAI 138
           + +E +
Sbjct: 156 QAKEVL 161

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 6/70 (8%), Positives = 16/70 (22%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
               +     +    L    +         +  L +  SA      A+  +      +  
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 88  RGAAYLAMGK 97
                  +G+
Sbjct: 249 ALLELSLLGQ 258

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 23/145 (15%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------------SQNAVYYANRAFA 57
            V  A    + A     A +Y +A     +A+E++              +A  +A  A A
Sbjct: 5   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 64

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKG-----------YYRRGAAYLAMGKFKEALKDFQ 106
              L  +  A+  A KA+    R  +             Y R  A   +G+  EA+ +F+
Sbjct: 65  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 124

Query: 107 QVKKLSPNDPDAAQKVKECEKAVKK 131
           +V ++           +   +    
Sbjct: 125 KVVEMIEERKGETPGKERMMEVAID 149

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 51.5 bits (121), Expect = 1e-07
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 11/145 (7%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAI 68
            +   K            + A +      +    N       + N A A   L E+  A 
Sbjct: 212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 271

Query: 69  QDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
               +  E            +        Y   G+  +A +      KL+      +  V
Sbjct: 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 331

Query: 123 KECEKAVKKLK-FEEAIAVPESERH 146
            E E   ++L+   +   +PE E+H
Sbjct: 332 IEGEAMAQQLRQLIQLNTLPELEQH 356

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 39  QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRGAAYL 93
           + I  ++ +A + A RA           A + A  A+E  P              G    
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 94  AMGKFKEALKDFQQVKKLSPNDPD 117
             G+   +L   QQ ++++     
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDV 86

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 11/117 (9%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSA 67
            AE     A  A       +A  L   A+E           V  +          E   +
Sbjct: 11  HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 70

Query: 68  IQDASKAIEIDPRYP------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           +    +  ++  ++           ++     A G  + A +  ++  +L       
Sbjct: 71  LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 127

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 8/74 (10%), Positives = 19/74 (25%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
              ++   +   ++     +    N    +       A   L      +Q  S    +DP
Sbjct: 248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307

Query: 80  RYPKGYYRRGAAYL 93
                     + +L
Sbjct: 308 MRAAYLDDLRSKFL 321

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 17/160 (10%), Positives = 47/160 (29%), Gaps = 19/160 (11%)

Query: 13  RAEELKALANEAFRAKK----YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS-- 66
           + +  ++     F+ ++        ++L SQ +  N   A  +  R      LE   S  
Sbjct: 24  KLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE 83

Query: 67  --------AIQDASKAIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDP 116
                    +      + ++P+    ++ R      + +  +   L+   +  +    D 
Sbjct: 84  ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DE 140

Query: 117 DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQS 156
                         +     A  +  ++     +  +Y S
Sbjct: 141 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-------YANRAFAHTKLEEYGS 66
          AE+   L   A+    Y        QA+    +  +            ++A  +  +   
Sbjct: 5  AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97
          A+    K +E+DP + +           M K
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
                       + I L  + +      +   Y    A  + +L+EY  A++     ++ 
Sbjct: 42  CLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101

Query: 78  DPRYPKGYYRRGAAYLAMGK 97
           +P+  +          AM K
Sbjct: 102 EPQNNQAKELERLIDKAMKK 121

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Phosphodiesterase yfcE
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 297 VCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE----VILTLFAFKCMCP 352
              D+HG       + EL      +   +  GD ++ G  +          +        
Sbjct: 6   FASDIHGSLPATERVLELFAQSGAQW-LVILGDVLNHGPRNALPEGYAPAKVVERLNEVA 64

Query: 353 SAIYLSRGNHE 363
             +   RGN +
Sbjct: 65  HKVIAVRGNCD 75

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 4  METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----RAFAHT 59
          M + + ++ +A +L + A +  +A  Y +A+ LY  A++       Y A     +     
Sbjct: 1  MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA 60

Query: 60 KLEEY 64
          K  EY
Sbjct: 61 KCTEY 65

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY 51
           +EL  L  ++++ K ++QA   + +A +L   +  + 
Sbjct: 2  PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFN 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	556
d1s95a_	324	Serine/threonine protein phosphatase 5, PP5 {Human	100.0
d3c5wc1	288	Protein phosphatase 2A catalytic subunit alpha iso	100.0
d1jk7a_	294	Protein phosphatase-1 (PP-1) {Human (Homo sapiens)	100.0
d1auia_	473	Protein phosphatase-2B (PP-2B, calcineurin A subun	100.0
d1g5ba_	219	lambda ser/thr protein phosphatase {Bacteriophage	99.9
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1nnwa_	251	Hypothetical protein PF1291 {Archaeon Pyrococcus f	99.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.65
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.64
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.6
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.53
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.48
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.48
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.45
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.32
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.3
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1uf3a_	228	Hypothetical protein TT1561 {Thermus thermophilus	99.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.24
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.2
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.07
d1s3la_	165	Putative phosphodiesterase MJ0936 {Methanococcus j	99.05
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.05
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.97
d3ck2a1	173	Uncharacterized protein SP1879 {Streptococcus pneu	98.92
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.87
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.87
d1su1a_	184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	98.84
d1z2wa1	182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	98.81
d2a22a1	193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	98.8
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.76
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.74
d2yvta1	257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	98.65
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.64
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.56
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.52
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.31
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.29
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.18
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.13
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.96
d1ii7a_	333	Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.63
d1xm7a_	188	Hypothetical protein aq_1666 {Aquifex aeolicus [Ta	97.58
d2hy1a1	256	Rv0805 cyclic nucleotide phosphodiesterase {Mycoba	97.57
d3d03a1	271	Glycerophosphodiesterase GpdQ {Enterobacter aeroge	97.45
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.43
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.4
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.32
d2nxfa1	320	Uncharacterized C17orf48 homolog zgc:64213 {Zebraf	96.45
d2qfra2	312	Plant purple acid phosphatase, catalytic domain {K	95.48
d1utea_	302	Mammalian purple acid phosphatase {Pig (Sus scrofa	94.69
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.37
d2z1aa2	302	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	81.03

>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Serine/threonine protein phosphatase 5, PP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-85  Score=648.89  Aligned_cols=320  Identities=60%  Similarity=1.073  Sum_probs=307.8

Q ss_pred             CCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHH
Q 008730          234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE  313 (556)
Q Consensus       234 ~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~  313 (556)
                      |+||++++-.+|.++++++++.+++++.++.+++.+||.+++++|++||++++|..+...+|+||||||||+.||.++|+
T Consensus         1 ~~gp~~~~~~~t~~~~~~li~~~~~~~~l~~~~~~~ll~~~~~il~~e~~l~~i~~~~~~pv~VvGDiHGq~~DL~~if~   80 (324)
T d1s95a_           1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE   80 (324)
T ss_dssp             CCSSCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCeEEeecCCCCCEEEEEECCCCHHHHHHHHH
Confidence            78999976569999999999999999999999999999999999999999999987666789999999999999999999


Q ss_pred             hcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHh
Q 008730          314 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF  393 (556)
Q Consensus       314 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  393 (556)
                      ..|+|+.+.+|||||||||||++|+||+.+|++||+.||++|++||||||...++..|||.+||..+|+.++|+.+++.|
T Consensus        81 ~~g~p~~~~~ylFLGDYVDRG~~slEvi~lL~~lKi~yP~~v~LLRGNHE~~~~n~~ygF~~e~~~k~~~~l~~~~~~~F  160 (324)
T d1s95a_          81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF  160 (324)
T ss_dssp             HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HCCCCCCCCeEEEecccccCcCcceeehHHHHHHHHhCCCcEEeccCCccccccccccccchHhhhhcCHHHHHHHHHHH
Confidence            99999877779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHH
Q 008730          394 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL  473 (556)
Q Consensus       394 ~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl  473 (556)
                      ++||++|+|++++||||||||++...++++|++++|+.++++.++.+|+|||||.+..++.++.||.|+.||++++++||
T Consensus       161 ~~LPlaa~I~~~ilcvHGGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dlLWSDP~~~~~~~~~~Rg~g~~FG~~~~~~Fl  240 (324)
T d1s95a_         161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL  240 (324)
T ss_dssp             TTSCSEEEETTTEEECSSCCCSSSCCCHHHHHTCCCSSSCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred             hhcchhhhccCcEEEecCCcCccccCCHHHHHhccCCCCCcchhhhhhhhccCccccCCcCcCCCCCcCCcCHHHHHHHH
Confidence            99999999999999999999667788999999999999999999999999999999889999999999999999999999


Q ss_pred             HHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccchhhhhh
Q 008730          474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLR  553 (556)
Q Consensus       474 ~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (556)
                      ++||+++||||||++++||++.+++|||||||||||||..+|+||+|.|.+++++++|+||++.|+|.++||.|+|++|.
T Consensus       241 ~~n~l~lIIR~He~v~~G~~~~~~~kviTvFSa~nY~~~~~N~~a~l~i~~~~~~~~~~~f~~~p~p~~~p~~~~~~~~~  320 (324)
T d1s95a_         241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYANTLLQ  320 (324)
T ss_dssp             HHHTCCEEEECCSCCTTSEEEEGGGTEEEECCCSSGGGTSCCCEEEEEEETTEEEEEEEEECCCCCCSCCTTTTSCHHHH
T ss_pred             HHcCCcEEEEcCccccCceEEecCCcEEEEeCCCccCCCCCcceEEEEEECCCceeEEEEecCCCCCCCChhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999996677899999999999999999999999763

>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-78  Score=588.14  Aligned_cols=285  Identities=39%  Similarity=0.723  Sum_probs=276.0

Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeee
Q 008730          247 DFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLF  326 (556)
Q Consensus       247 ~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vf  326 (556)
                      .+++++++++++++.++++++..||++|+++|++||++++|+.|    ++|||||||+++||.++|+..|+++. .+|||
T Consensus         3 ~~~d~~i~~~~~~~~l~~~~i~~L~~~a~~il~~e~~l~~i~~p----v~VvGDlHG~~~DL~~if~~~g~p~~-~~ylF   77 (288)
T d3c5wc1           3 KELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPD-TNYLF   77 (288)
T ss_dssp             HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCCTTT-SCEEE
T ss_pred             hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCC----eEEEeeCCCCHHHHHHHHHhcCCCcc-ceEEe
Confidence            46899999999999999999999999999999999999999987    99999999999999999999998765 46999


Q ss_pred             ecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCe
Q 008730          327 NGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQK  405 (556)
Q Consensus       327 lGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~  405 (556)
                      ||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..||.++|+ +.+|..++++|+.||++|+|+++
T Consensus        78 LGDYVDRG~~slEvl~lL~alKi~~P~~v~lLRGNHE~~~~~~~~gF~~E~~~ky~~~~i~~~~~~~F~~LPlaaiI~~~  157 (288)
T d3c5wc1          78 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQ  157 (288)
T ss_dssp             CSCCCCSSSSHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHHSSSHHHHHHHHHHTTSCSEEEETTT
T ss_pred             cCcccCCCCcceeHHHHHHHHHhhCCCeEEEeccCCcccccccccCcchhhhhhcCcHHHHHHHHHHHhhccceEEecCe
Confidence            99999999999999999999999999999999999999999999999999999997 48999999999999999999999


Q ss_pred             EEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeec
Q 008730          406 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSH  485 (556)
Q Consensus       406 ~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H  485 (556)
                      +||||||| +|...++++|+.++|+.+.+++++++|++||||....++.+++||.|+.||++++++||++||+++|||||
T Consensus       158 i~cvHGGi-~~~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~rg~g~~fg~~~~~~Fl~~n~l~~IIR~H  236 (288)
T d3c5wc1         158 IFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAH  236 (288)
T ss_dssp             EEEESSCC-CTTCSSHHHHHHSCCSSSCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEecccc-cCCccchhhHhhcccccCCCccccccccccCCcccCCCCccCCCCCeeecCHHHHHHHHHHCCCcEEEcCC
Confidence            99999999 88999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             cccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCC
Q 008730          486 EVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP  538 (556)
Q Consensus       486 ~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~  538 (556)
                      |++++||++.+++||+|||||||||+.++|.||+|.| +++++++|++|+|+|
T Consensus       237 e~~~~G~~~~~~~kviTiFSa~~Y~~~~~N~~a~l~i-~~~~~~~~~~~~p~p  288 (288)
T d3c5wc1         237 QLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL-DDTLKYSFLQFDPAP  288 (288)
T ss_dssp             SCCTTSEEEEGGGTEEEEBCCTTGGGTSCCCEEEEEE-CTTCCEEEEEECCCC
T ss_pred             CcCCCCCeecCCCcEEEEecCCCccCCCCcceEEEEE-CCCCcEEEEEEeCCC
Confidence            9999999999999999999999999989999999999 999999999999976

>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-1 (PP-1)
species: Human (Homo sapiens), beta isoform [TaxId: 9606]

Probab=100.00  E-value=2.1e-77  Score=583.87  Aligned_cols=282  Identities=40%  Similarity=0.806  Sum_probs=267.8

Q ss_pred             HHHHHHHhhc------CC--CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC
Q 008730          249 VKKMMDDFKN------QK--CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE  320 (556)
Q Consensus       249 i~~~i~~~~~------~~--~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~  320 (556)
                      ++++++++.+      ++  .++++++..||++|.++|++||++++++.|    ++|||||||+++||.++|+..|+++.
T Consensus         4 id~~i~~l~~~~~~~~~~~~~l~~~~i~~l~~~a~~i~~~e~~ll~i~~p----v~VvGDiHG~~~DL~~if~~~g~p~~   79 (294)
T d1jk7a_           4 IDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE   79 (294)
T ss_dssp             HHHHHHHHHTTTTSCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHHhccCCCCCcccCCCHHHHHHHHHHHHHHHHhCCCEEEecCC----eEEEEECCCChHhHHHHHhhcCCCcc
Confidence            5666666532      11  489999999999999999999999999987    99999999999999999999999876


Q ss_pred             CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccc
Q 008730          321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH  400 (556)
Q Consensus       321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~  400 (556)
                      . +|||||||||||++|+||+.+|++||++||++|++||||||...++..|||.+||.++|+.++|+.++++|++||++|
T Consensus        80 ~-~ylFLGDYVDRG~~slE~i~lL~aLKi~~P~~v~lLRGNHE~~~~~~~~gF~~e~~~~y~~~i~~~~~~~F~~LPlaa  158 (294)
T d1jk7a_          80 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA  158 (294)
T ss_dssp             S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHTTSSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred             c-eEEeeccccCCCccchHHHHHHHHHHhhCCCeEEEecCCcccccccccccchhHHHhhcCHHHHHHHHHHHhhCceee
Confidence            5 599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCC
Q 008730          401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLD  479 (556)
Q Consensus       401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~  479 (556)
                      +|++++||||||| +|...++++++.+.|+.+.+..++++|+|||||... .+|.+++||.|+.||++++++||++||++
T Consensus       159 lI~~~i~cvHGGi-~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~RG~g~~fg~~~~~~Fl~~n~l~  237 (294)
T d1jk7a_         159 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLD  237 (294)
T ss_dssp             EETTTEEEESSCC-CTTCCCHHHHHTCCSSCCCCSSSHHHHHHHCEECSSCSSEEECTTSSSEEECHHHHHHHHHHTTCS
T ss_pred             EEcCeEEEecCcc-cCCccchhhhhhccCCCCCCCcchhhhhhhcCCccccCCCCCCCCCCccccCHHHHHHHHHHCCCC
Confidence            9999999999999 899999999999999999999999999999999875 47899999999999999999999999999


Q ss_pred             EEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecC
Q 008730          480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV  537 (556)
Q Consensus       480 ~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~  537 (556)
                      +||||||++++||++.++++||||||||||||.++|+||+|.| +++++++|++|+|+
T Consensus       238 ~IIR~He~~~~G~~~~~~~~viTiFSa~nY~~~~~N~gail~i-~~~~~~~~~~~~p~  294 (294)
T d1jk7a_         238 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPA  294 (294)
T ss_dssp             EEEECCSCCTTSEEEETTTTEEEEBCCTTGGGTCCCCEEEEEE-CTTSCEEEEEECCC
T ss_pred             EEEEcCccccCCcEEecCCcEEEEecCCCcCCCCCccEEEEEE-CCCCcEeEEEecCC
Confidence            9999999999999999999999999999999999999999999 99999999999874

>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-2B (PP-2B, calcineurin A subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-76  Score=602.29  Aligned_cols=289  Identities=42%  Similarity=0.752  Sum_probs=274.7

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730          249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  328 (556)
Q Consensus       249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG  328 (556)
                      ++-+.+++.++++++++++++||+++.++|++||++++|+.|    ++||||||||++||.++|+..|+|+.. +|||||
T Consensus        30 ~~~l~~hf~~egrl~~~~~l~li~~a~~il~~Epnll~i~~P----v~VvGDIHGq~~DLl~If~~~G~P~~~-~yLFLG  104 (473)
T d1auia_          30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT-RYLFLG  104 (473)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTC-CEEECS
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCCCCHHHHHHHHHHcCCCCcc-eEEecC
Confidence            566889999999999999999999999999999999999987    999999999999999999999998654 599999


Q ss_pred             ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEE
Q 008730          329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV  408 (556)
Q Consensus       329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~  408 (556)
                      ||||||++|+||+.+|++||+.||++|++||||||++.++..|||..||..+|++.+|+.+.++|++||++|+|++++||
T Consensus       105 DYVDRG~~SlEvlllL~aLKi~yP~~V~LLRGNHE~~~~n~~ygF~~E~~~ky~~~iy~~~~~~F~~LPLAAiI~~kifc  184 (473)
T d1auia_         105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC  184 (473)
T ss_dssp             CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEEE
T ss_pred             ccccCCcccHHHHHHHHHHHHhCCCeEEEeCCCCccHhhhcccccHHHHHHhhcHHHHHHHHHHhccchhhhhhcCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCC--------CCcCCCCCccccCHHHHHHHHHHCCCCE
Q 008730          409 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVGLSFGADVTKRFLQDNSLDL  480 (556)
Q Consensus       409 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~--------~~~~~rg~g~~fg~~~~~~fl~~~~~~~  480 (556)
                      ||||| +|...++++|+.++|+.+++..+.++|+|||||.+..+        +.++.||+|+.||.+++++||++||+++
T Consensus       185 VHGGI-sp~l~~l~dI~~I~R~~e~p~~~~~~DLLWSDP~~~~~~~~~~~~~~~ns~RG~g~~FG~~a~~~FL~~n~L~~  263 (473)
T d1auia_         185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS  263 (473)
T ss_dssp             ESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred             eeccC-CCccCchhhhhhcccccCCCCcCceeeeeccCCcccccccccccccccCCCCCCEEEEChHHHHHHHHHcCCcE
Confidence            99999 89999999999999999999999999999999976432        3467899999999999999999999999


Q ss_pred             EEeeccccccCceEecCCe------EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcc
Q 008730          481 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPM  545 (556)
Q Consensus       481 iir~H~~~~~G~~~~~~~~------~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (556)
                      ||||||++++||+++++++      ||||||||||||.++|+||||.+++  ..++|+||.++|||.+.|-
T Consensus       264 IIR~HE~~~~Gy~~~~~~~~~~~~~viTVFSApnYc~~~nN~aavl~~~~--~~~~i~qf~~~~hp~~~p~  332 (473)
T d1auia_         264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN--NVMNIRQFNCSPHPYWLPN  332 (473)
T ss_dssp             EEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEEET--TEEEEEEECCCCCCCCCGG
T ss_pred             EEEcCcchhhhhhhhcCCccCCCCCEEEEcCCCCcCCCcCCeeEEEeecC--CCcceEEecCCCCcccccc
Confidence            9999999999999999987      9999999999999999999999943  3579999999999999996

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: lambda ser/thr protein phosphatase
species: Bacteriophage lambda [TaxId: 10710]

Probab=99.90  E-value=6.6e-25  Score=207.54  Aligned_cols=174  Identities=21%  Similarity=0.232  Sum_probs=122.5

Q ss_pred             CeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccc
Q 008730          283 SLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH  362 (556)
Q Consensus       283 ~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNH  362 (556)
                      ....++....+||+||||||||+++|.++|++++++++.+++|||||||||||+|.+|+.+|.      +.++++|+|||
T Consensus         3 ~~~~~d~~~~~rI~vIgDIHG~~~~L~~lL~~i~~~~~~d~lv~lGD~vDrGp~s~~vl~~l~------~~~~~~i~GNH   76 (219)
T d1g5ba_           3 YYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELIT------FPWFRAVRGNH   76 (219)
T ss_dssp             SEEEEEGGGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGG------STTEEECCCHH
T ss_pred             cccccCCCCCCeEEEEEecccCHHHHHHHHHHcCCCCCCCEEEEeCCccccCccHHHHHHHhh------ccccccccCcH
Confidence            345666666679999999999999999999999998778899999999999999999998874      35789999999


Q ss_pred             cccccccccCchh--hH-------Hhhh---hHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhc
Q 008730          363 ESKSMNKIYGFEG--EV-------RSKL---SETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTI  427 (556)
Q Consensus       363 E~~~~~~~~g~~~--~~-------~~~~---~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~  427 (556)
                      |.+++....+...  ..       ....   ...+.+.+.+++..+|....+   +.+++++|||++.... .       
T Consensus        77 E~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~h~~~~~~~~-~-------  148 (219)
T d1g5ba_          77 EQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEY-E-------  148 (219)
T ss_dssp             HHHHHHHHSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCCSSBC-C-------
T ss_pred             HHHHHHHHhccccccHHHHcCchHHhhcccchhHHHHHHHHHHHhCccccccccCCCcEEEEECCCchhhh-c-------
Confidence            9998876654321  11       1111   234556778999999987654   5689999999832211 0       


Q ss_pred             ccCCCCCCccchhhhhcCCCCCC---CCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCce
Q 008730          428 DRFCEPPEEGLMCELLWSDPQPL---PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE  493 (556)
Q Consensus       428 ~r~~~~~~~~~~~~llw~dp~~~---~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~  493 (556)
                           ........+++|+++...   .++.+                  ...+.+.||.||+++.+...
T Consensus       149 -----~~~~~~~~~~lw~r~~~~~~~~~~~~------------------~~~~~~~vV~GHt~~~~~~~  194 (219)
T d1g5ba_         149 -----FGKPVDHQQVIWNRERISNSQNGIVK------------------EIKGADTFIFGHTPAVKPLK  194 (219)
T ss_dssp             -----TTCCCCHHHHHHCCHHHHHHHTTCCC------------------CCBTSSEEEECSSCCSSCEE
T ss_pred             -----cccccchhhhcccccccccccccccc------------------ccCCCCEEEECCcCCCCcEE
Confidence                 111122346789873210   01100                  11357789999999876543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.4e-18  Score=150.07  Aligned_cols=132  Identities=54%  Similarity=0.860  Sum_probs=124.4

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      ++...++.+...|+.+++.|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+++.+|+++
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~  140 (556)
                      |.++..+|++++|+.+|+++++++|+++.++..++.+....++..+++|+..
T Consensus        85 g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          85 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999998877777667777654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.5e-18  Score=141.62  Aligned_cols=115  Identities=31%  Similarity=0.542  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+...|+.++..|+|++|+..|+++++.+|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      ..+|++++|+..|+++++++|+++.++..++.+..
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999887753

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Phosphoesterase-related
domain: Hypothetical protein PF1291
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.75  E-value=4.5e-18  Score=162.78  Aligned_cols=199  Identities=15%  Similarity=0.070  Sum_probs=126.5

Q ss_pred             cceEeccCCCCHHHHHHHHHhcCC----CCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccc
Q 008730          294 HFTVCGDVHGQFYDLLNIFELNGL----PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK  369 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~~~l~~~~~----~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~  369 (556)
                      +|.|||||||++..|+++|+.+..    ..+.+.+||+||+||||+++.||+++|..|+..  .++++|+||||.+....
T Consensus         2 ~I~visDiHg~~~~l~~~l~~i~~~~~~~~~~D~ii~~GDlvd~G~~~~evi~~l~~l~~~--~~v~~v~GNHD~~~~~~   79 (251)
T d1nnwa_           2 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--ENVKIIRGKYDQIIAMS   79 (251)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHH--SCEEEECCHHHHHHHHS
T ss_pred             EEEEEEccccCHHHHHHHHHHHHHhhccCCCCcEEEEecCcCCCCCCcHHHHHHHHHHhhc--CCEEEEeccHHHHHHhc
Confidence            589999999999999999987632    223467999999999999999999999998643  47899999999887654


Q ss_pred             ccCchhhH--------------HhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCC
Q 008730          370 IYGFEGEV--------------RSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCE  432 (556)
Q Consensus       370 ~~g~~~~~--------------~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~  432 (556)
                      ..++....              .......+.....+|+..+|.....   +.+++++||++ ....              
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~H~~p-~~~~--------------  144 (251)
T d1nnwa_          80 DPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSP-INPF--------------  144 (251)
T ss_dssp             CTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCS-SCTT--------------
T ss_pred             cccccccchhhhhccchhHHHhhHHHhhhcCHHHHHHHHhcccceEEeeCCCcEEEEecCc-cCcc--------------
Confidence            43322111              0011223445566888888876543   45899999976 2110              


Q ss_pred             CCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHH-HCCCCEEEeeccccccCceEecCCeEEEEecCCCCCC
Q 008730          433 PPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ-DNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCD  511 (556)
Q Consensus       433 ~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~-~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~  511 (556)
                                -|..+..              -........+. ..+.+++|-||..++.... ..+..++-.-|.. +.-
T Consensus       145 ----------~~~~~~~--------------~~~~~~~~~~~~~~~~d~vv~GHtH~~~~~~-~~~~~~in~Gsvg-~~~  198 (251)
T d1nnwa_         145 ----------DGEVLAE--------------QPTSYYEAIMRPVKDYEMLIVASPMYPVDAM-TRYGRVVCPGSVG-FPP  198 (251)
T ss_dssp             ----------TCCCCSS--------------CCHHHHHHHHGGGTTSSEEEESTTCSEEEEE-ETTEEEEEECCSS-SCS
T ss_pred             ----------cchhhhh--------------hHHHHHhhhcccccCceEEEEeccceEEEEE-eeeeecccccccc-ccC
Confidence                      0000000              00111222222 2367899999999754443 3333444444432 221


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEe
Q 008730          512 QMGNKGAFIRFEAPTLKPNIVTFA  535 (556)
Q Consensus       512 ~~~n~~a~~~~~~~~~~~~~~~~~  535 (556)
                      .....++++.++.++.+++|.+++
T Consensus       199 ~g~~~~~y~i~d~~~~~~~~~~~~  222 (251)
T d1nnwa_         199 GKEHKATFALVDVDTLKPKFIEVE  222 (251)
T ss_dssp             SSSCCEEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCCeEEEEEcCCCeEEEEEEC
Confidence            234568888997777888877664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.2e-16  Score=146.94  Aligned_cols=105  Identities=32%  Similarity=0.479  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .++.+.+.|+.+++.|+|++|+..|++|++++|.++.+|.++|.+|.++|++++|+.+|++|++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                      ..+|++++|+..|++|++++|++..
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHH
Confidence            9999999999999999999886544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.8e-15  Score=143.10  Aligned_cols=125  Identities=20%  Similarity=0.183  Sum_probs=118.0

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .++..+..++.+|.+|...|++++|+..|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+++.+++++
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK  133 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~  133 (556)
                      |.+|..+|++++|+..|+++++.+|++......++.+....+...
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  156 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ  156 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999999998888887777666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.64  E-value=1.8e-15  Score=133.41  Aligned_cols=123  Identities=28%  Similarity=0.398  Sum_probs=112.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhhCHHHHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------AVYYANRAFAHTKLEEYGSAIQDAS   72 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------~~a~~~lg~~~~~~g~~~~A~~~~~   72 (556)
                      +..+.+..+...|+.+++.|+|.+|+..|++|++..+..                ..++.++|.||+++|++++|+.+|+
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            345667889999999999999999999999999876543                2467899999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        73 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..+...+..+..++++
T Consensus        92 ~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          92 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.5e-15  Score=133.34  Aligned_cols=122  Identities=30%  Similarity=0.479  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASKAI   75 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al   75 (556)
                      ...+..+...|+.++..|+|++|+..|+++++..|..               ..++.++|.||+++|+|++|+.++++++
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            3457888899999999999999999999999998764               3567889999999999999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      +++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.+...++.+...+.+.
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998777654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.60  E-value=1.8e-14  Score=128.98  Aligned_cols=123  Identities=30%  Similarity=0.465  Sum_probs=112.4

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASKA   74 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a   74 (556)
                      ....+..+...|+.+++.|+|.+|+..|++|+...+..               ..++.++|.||.++|++++|+.+++++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            34568889999999999999999999999999875442               355888999999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        75 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      +.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.+...++.+...++..
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999888776653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=8e-15  Score=131.42  Aligned_cols=121  Identities=21%  Similarity=0.450  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL----------------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAI   75 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   75 (556)
                      ..+..+...|..++..|+|++|+..|+++++.                +|....++.++|.++.++|+|++|+..|++|+
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            44566788899999999999999999999864                45567789999999999999999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730           76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (556)
Q Consensus        76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  132 (556)
                      +++|+++.+|+++|.+|..+|++++|+..|+++++++|++..+...+..+...+...
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998777653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.3e-14  Score=122.22  Aligned_cols=115  Identities=29%  Similarity=0.451  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------HHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KGY   85 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~~   85 (556)
                      .+..+.++|+.++..|+|++|+.+|+++++++|+++.++.++|.+|.++|+|++|+.+|+++++++|+++       .++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            5778899999999999999999999999999999999999999999999999999999999999998875       467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      +.+|.++..++++++|+.+|++++..+|. ++....+..+...
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~  124 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI  124 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence            77888889999999999999999999875 6666666655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.4e-15  Score=123.68  Aligned_cols=114  Identities=13%  Similarity=0.135  Sum_probs=103.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 008730           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK---LEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAY   92 (556)
Q Consensus        18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~   92 (556)
                      .++++.+...+++++|.+.|++++.++|.++.+++++|.++++   .+++++|+..|+++++.+|.+  +.+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4678889999999999999999999999999999999999986   456778999999999998865  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ..+|++++|+++|+++++++|++..+...+..+..++++
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999988776653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.1e-14  Score=128.90  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+-.+++.|..+...|+|++|++.|++   +.|.++.+|+++|.+|..+|++++|+.+|++|++++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            345667889999999999999999986   46678999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           93 LAMGKFKEALKDFQQVKKLSPND----------------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~----------------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..+|++++|+..|++|+...|.+                .+++.+++.++..+++  +++|++.+.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~--~~~A~~~l~  144 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA  144 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            99999999999999999986654                3677889999988888  666665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.2e-14  Score=143.99  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=123.2

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      +|+-++++..+|.++.+.+.+++|+..+++|++++|++..+|+++|.++..+|+ +++|+..++++++++|++..+|+++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            678899999999999999999999999999999999999999999999999875 9999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |.++..+|++++|+..++++++++|++..++..++.++..+++  +++|++.+.
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~--~~~Al~~~~  170 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD  170 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            9999999999999999999999999999999999999999988  455555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=3.1e-14  Score=118.38  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...++.+|..+++.|++++|+..|+++++.+|+++.+|..+|.++.+.|++++|+.+|+++++++|+++.+++.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHH
Q 008730           94 AMGKFKEALKDFQQVK  109 (556)
Q Consensus        94 ~~g~~~~A~~~~~~al  109 (556)
                      .+|++++|++.++++|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999986

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-14  Score=142.49  Aligned_cols=133  Identities=8%  Similarity=0.038  Sum_probs=122.3

Q ss_pred             CChhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      .+|....+|..+|.++...| ++++|+..++++++.+|++..+|.++|.++..+|++++|+..++++++++|++..+|.+
T Consensus        72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~  151 (315)
T d2h6fa1          72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  151 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHH
Confidence            46888999999999999986 59999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh----HHHHhcCC
Q 008730           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK----FEEAIAVP  141 (556)
Q Consensus        88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~----~~~Ai~~~  141 (556)
                      +|.++..+|++++|+.+++++++++|.+..++.+++.++..++...    +++|+...
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~  209 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT  209 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence            9999999999999999999999999999999999999987766532    45555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=1.3e-13  Score=120.10  Aligned_cols=109  Identities=21%  Similarity=0.184  Sum_probs=98.8

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~----------g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+-+.+.|++|+..|+++++++|+++.++.++|.++..+          +.+++|+..|++|++++|+++.+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            456778899999999999999999999999999999854          4568999999999999999999999999999


Q ss_pred             HHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730           93 LAMGK-----------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (556)
Q Consensus        93 ~~~g~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~  131 (556)
                      ..+|+           +++|+++|++|++++|++..++..++.+....+.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~  135 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  135 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            88764           6899999999999999999999999988766654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.4e-13  Score=137.22  Aligned_cols=127  Identities=20%  Similarity=0.178  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|.+...+..+|.++
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~  141 (556)
                      ...|++++|++.|+++++++|+++.++..+|.++...|+  +++|+..+
T Consensus       316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~  362 (388)
T d1w3ba_         316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--LQEALMHY  362 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC--CHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence            555555555555555555555555555555555555554  34444433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=138.05  Aligned_cols=122  Identities=21%  Similarity=0.233  Sum_probs=117.6

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+|+.+.++..+|.++...|++++|+..|++++...|.+...+..+|.++...|++++|+..|+++++++|+++.+++++
T Consensus       266 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T d1w3ba_         266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      |.+|..+|++++|+..|++|++++|+++.++..++.++..+|
T Consensus       346 a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999998765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.5e-13  Score=131.19  Aligned_cols=109  Identities=15%  Similarity=0.298  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+..+|..+...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~  121 (556)
                      ..+|++++|+..|++|++++|++..+...
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence            99999999999999999999988765433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.6e-13  Score=121.32  Aligned_cols=106  Identities=16%  Similarity=0.156  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----------
Q 008730           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----------   81 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----------   81 (556)
                      ..+..++++|.+++..|++++|+..|++|++++|+++.+|+++|.++.++|++++|+..|++|+...+.+          
T Consensus        34 ~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          34 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            3467899999999999999999999999999999999999999999999999999999999999876643          


Q ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730           82 ------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (556)
Q Consensus        82 ------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  117 (556)
                            .++++++|.++..+|++++|++.+++|+++.|+...
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence                  478999999999999999999999999999987543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-12  Score=127.71  Aligned_cols=98  Identities=10%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (556)
Q Consensus        16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   95 (556)
                      ..+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|...
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence            34677777888888888888888888888888778888888887788888888888888877777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHhCC
Q 008730           96 GKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        96 g~~~~A~~~~~~al~l~p  113 (556)
                      |++++|++.+++++...|
T Consensus       101 ~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             TCHHHHHHHHHHHHHTST
T ss_pred             ccccccccchhhHHHhcc
Confidence            777777666666554433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.32  E-value=3.6e-12  Score=112.12  Aligned_cols=103  Identities=24%  Similarity=0.284  Sum_probs=89.3

Q ss_pred             HHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 008730           13 RAEELKA--LANEAFRAKKYSQAIDLYSQAIELNSQN------------AVYYANRAFAHTKLEEYGSAIQDASKAIEID   78 (556)
Q Consensus        13 ~a~~~~~--lg~~~~~~g~~~~Al~~~~~al~~~p~~------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   78 (556)
                      .++++..  .|..++..|+|++|+..|++++++.|+.            +.+|.++|.+|..+|++++|+..+++++++.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            3445554  4889999999999999999999998764            4679999999999999999999999999875


Q ss_pred             CC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730           79 PR-----------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (556)
Q Consensus        79 p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  115 (556)
                      |+           ...+++++|.+|..+|++++|+.+|++|+++.|+.
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            42           24478999999999999999999999999997654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.4e-12  Score=104.45  Aligned_cols=90  Identities=24%  Similarity=0.299  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      +...|..++..|+|++|+..|+++++.+|+++.+|.++|.+|..+|++++|+..|+++++++|+++.++..++.++..++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhcCCC
Q 008730          131 KLKFEEAIAVPE  142 (556)
Q Consensus       131 ~~~~~~Ai~~~~  142 (556)
                      +  +++|+..+.
T Consensus        86 ~--~~~A~~~~~   95 (117)
T d1elwa_          86 R--FEEAKRTYE   95 (117)
T ss_dssp             C--HHHHHHHHH
T ss_pred             C--HHHHHHHHH
Confidence            8  677777766

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.2e-11  Score=117.29  Aligned_cols=114  Identities=18%  Similarity=0.112  Sum_probs=102.7

Q ss_pred             ccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730           27 AKKYSQAIDLYSQAIELN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (556)
Q Consensus        27 ~g~~~~Al~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  102 (556)
                      ..+++.|+..+++++...    +..+.+++++|.+|.+.|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            345677888888888754    3456799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       103 ~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      ..|+++++++|+++.++..++.++..+|+  +++|+..++
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~  129 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL  129 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhh--HHHHHHHHH
Confidence            99999999999999999999999999887  677776665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.28  E-value=2e-11  Score=100.95  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (556)
Q Consensus        50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~  129 (556)
                      .++.+|.++.+.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++++|++..++..++.++...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhcCCC
Q 008730          130 KKLKFEEAIAVPE  142 (556)
Q Consensus       130 ~~~~~~~Ai~~~~  142 (556)
                      |+  +++|++..+
T Consensus        98 g~--~~~A~~~l~  108 (112)
T d1hxia_          98 HN--ANAALASLR  108 (112)
T ss_dssp             HH--HHHHHHHHH
T ss_pred             CC--HHHHHHHHH
Confidence            88  688776543

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Hypothetical protein TT1561
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=1e-11  Score=115.66  Aligned_cols=72  Identities=8%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ++|.++|||||+++.|.++++.+... ..|.+|++||++|||+.+.|+..++..|+... -.++.++||||...
T Consensus         6 ~~i~~~sd~hg~~eale~~~~~~~~~-~~D~vv~~GDl~~~~~~~~~~~~~~~~L~~~~-~pv~~i~GNHD~~~   77 (228)
T d1uf3a_           6 RYILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEAH-LPTAYVPGPQDAPI   77 (228)
T ss_dssp             CEEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGC-SCEEEECCTTSCSH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCccchHHHHhhhhhcccc-ceEEEEecCCCchh
Confidence            46899999999999999999876543 34679999999999999999999888887553 35888999999754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.9e-11  Score=111.35  Aligned_cols=95  Identities=22%  Similarity=0.247  Sum_probs=89.0

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~  126 (556)
                      ++..+...|..+++.|+|++|+..|++|++++|+++.+|.++|.+|..+|++++|+.+|++|++++|++..++..+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHhcCCCC
Q 008730          127 KAVKKLKFEEAIAVPES  143 (556)
Q Consensus       127 ~~~~~~~~~~Ai~~~~~  143 (556)
                      ..+++  +++|+..+.+
T Consensus        83 ~~l~~--~~~A~~~~~~   97 (201)
T d2c2la1          83 LEMES--YDEAIANLQR   97 (201)
T ss_dssp             HHTTC--HHHHHHHHHH
T ss_pred             HHCCC--HHHHHHHHHH
Confidence            99998  6777776653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.3e-11  Score=97.34  Aligned_cols=80  Identities=16%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   86 (556)
                      ++.++.+|..+++.|+|++|+..|++|+++.|.+       +.++.++|.++.++|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4556666666666666666666666666664432       455666666666666666666666666666666666666


Q ss_pred             HHHHHHH
Q 008730           87 RRGAAYL   93 (556)
Q Consensus        87 ~lg~~~~   93 (556)
                      +++.+..
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.6e-11  Score=104.08  Aligned_cols=92  Identities=26%  Similarity=0.236  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus        49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      ..+...|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHhcCCC
Q 008730          129 VKKLKFEEAIAVPE  142 (556)
Q Consensus       129 ~~~~~~~~Ai~~~~  142 (556)
                      +|+  +++|+..+.
T Consensus        91 ~g~--~~eA~~~~~  102 (159)
T d1a17a_          91 LGK--FRAALRDYE  102 (159)
T ss_dssp             TTC--HHHHHHHHH
T ss_pred             cCC--HHHHHHHHH
Confidence            998  678777665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.9e-11  Score=94.46  Aligned_cols=84  Identities=14%  Similarity=-0.014  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      +++-++.+|.++++.|+|++|+.+|++|+++.|.+       ..++.++|.++.++|++++|++.|+++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35667899999999999999999999999986543       67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 008730          120 QKVKECEKAVK  130 (556)
Q Consensus       120 ~~l~~~~~~~~  130 (556)
                      .+++.+...++
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99998776654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=1.3e-10  Score=103.30  Aligned_cols=93  Identities=19%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      .|..+..+.++|.++.+.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHH
Q 008730           90 AAYLAMGKFKEAL  102 (556)
Q Consensus        90 ~~~~~~g~~~~A~  102 (556)
                      .++.......++.
T Consensus       153 ~~~~~l~~~~~~~  165 (169)
T d1ihga1         153 KVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9988777666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.4e-11  Score=99.53  Aligned_cols=95  Identities=14%  Similarity=0.226  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      +..+..+|.+++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..++++++++|++..++..++.++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999998877777777766


Q ss_pred             HHhhhh-----HHHHhcCCC
Q 008730          128 AVKKLK-----FEEAIAVPE  142 (556)
Q Consensus       128 ~~~~~~-----~~~Ai~~~~  142 (556)
                      .+|...     +++|+..++
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~  103 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYN  103 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHH
Confidence            666531     555555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.3e-10  Score=98.12  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      ...+.++|.+|++.|+|++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.++.
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HcCCHHHHH
Q 008730           94 AMGKFKEAL  102 (556)
Q Consensus        94 ~~g~~~~A~  102 (556)
                      ..++..+..
T Consensus       142 ~~~~~~~~e  150 (170)
T d1p5qa1         142 RIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877766543

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.05  E-value=1.4e-09  Score=96.22  Aligned_cols=159  Identities=15%  Similarity=0.158  Sum_probs=96.8

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  372 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g  372 (556)
                      |||.|+|||||++..|.++++.+... ..+.++++||+++.     +++..+..+.    ..++.++||||.......  
T Consensus         1 MkI~iiSDiHgn~~al~~vl~~~~~~-~~D~ii~~GD~~~~-----~~~~~l~~~~----~~~~~v~GN~D~~~~~~~--   68 (165)
T d1s3la_           1 MKIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFVSL-----FVIKEFENLN----ANIIATYGNNDGERCKLK--   68 (165)
T ss_dssp             CEEEEECCCTTCHHHHHHHHHHHHHS-CCSEEEECSCCCST-----HHHHHGGGCS----SEEEEECCTTCCCHHHHH--
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHhc-CCCEEEECCCccCH-----HHHHHHhhcC----ccEEEEcccccccchhhh--
Confidence            57999999999999999999865433 34679999999964     4555554443    468899999996432110  


Q ss_pred             chhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC
Q 008730          373 FEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP  449 (556)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~  449 (556)
                                  ...........+|....+   +.+++++||-.                                    
T Consensus        69 ------------~~~~~~~~~~~~~~~~~~~~~~~~i~l~Hg~~------------------------------------  100 (165)
T d1s3la_          69 ------------EWLKDINEENIIDDFISVEIDDLKFFITHGHH------------------------------------  100 (165)
T ss_dssp             ------------HHHHHHCTTCEEESEEEEEETTEEEEEEESCC------------------------------------
T ss_pred             ------------HhhhhhcccccCChhhceEECCcEEEEEECCc------------------------------------
Confidence                        011112223344444333   45789999721                                    


Q ss_pred             CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCC-CCCeEEEEEEecCCCc
Q 008730          450 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ-MGNKGAFIRFEAPTLK  528 (556)
Q Consensus       450 ~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~-~~n~~a~~~~~~~~~~  528 (556)
                                      .+.++.+.+..+.+.+|-||+-.+ +... .+++   +|-.|.-+|. ....+++..++.++.+
T Consensus       101 ----------------~~~~~~~~~~~~~d~v~~GHtH~~-~~~~-~~~~---~~iNPGSvg~p~~~~~s~~ild~~~~~  159 (165)
T d1s3la_         101 ----------------QSVLEMAIKSGLYDVVIYGHTHER-VFEE-VDDV---LVINPGECCGYLTGIPTIGILDTEKKE  159 (165)
T ss_dssp             ----------------HHHHHHHHHHSCCSEEEEECSSCC-EEEE-ETTE---EEEECCCSSCTTTSCCEEEEEETTTTE
T ss_pred             ----------------ccHHHHHhhcCCCCEEEECCcCcc-eEEE-ECCE---EEEECCCCCCCCCCCCEEEEEEccCCe
Confidence                            123556778889999999999863 3333 3442   2222211111 2234567777556665


Q ss_pred             eeEE
Q 008730          529 PNIV  532 (556)
Q Consensus       529 ~~~~  532 (556)
                      ++.+
T Consensus       160 ~~~i  163 (165)
T d1s3la_         160 YREI  163 (165)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.05  E-value=9.5e-10  Score=97.51  Aligned_cols=98  Identities=19%  Similarity=0.235  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      .+..+.++|.+++..|+|++|+..++++++++|.+..+++++|.++..+|+|++|+.+|+++++++|++..++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHH-HHHHHHHHHH
Q 008730           93 LAMGKFKE-ALKDFQQVKK  110 (556)
Q Consensus        93 ~~~g~~~~-A~~~~~~al~  110 (556)
                      ...+++.+ ..+.|.+.++
T Consensus       143 ~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHh
Confidence            88776654 4444444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.04  E-value=6.2e-10  Score=97.12  Aligned_cols=83  Identities=17%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   93 (556)
                      +..+.++|.+|++.|+|++|+..|+++++++|.+..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             HcC
Q 008730           94 AMG   96 (556)
Q Consensus        94 ~~g   96 (556)
                      +++
T Consensus       147 kl~  149 (153)
T d2fbna1         147 KLK  149 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.4e-09  Score=107.33  Aligned_cols=132  Identities=12%  Similarity=0.059  Sum_probs=113.1

Q ss_pred             CChhHHHHHHHHHHHHH----------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHHHH
Q 008730            9 SSVSRAEELKALANEAF----------RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAIE   76 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~----------~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~   76 (556)
                      .+|+...+|..++..+.          ..|++++|+..++++++.+|++..+|..+|.++...++  +++|+..++++++
T Consensus        58 ~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            35666666666555544          45568999999999999999999999999999988775  8999999999999


Q ss_pred             hCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           77 IDPRYPKGY-YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        77 l~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .+|.+..++ ...|.++...+.+++|+..++++++++|++..++..++.++..+++  +++|+....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~--~~~A~~~~~  202 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP--QPDSGPQGR  202 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC--CCCSSSCCS
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence            999999886 5678999999999999999999999999999999999999999988  445544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5e-10  Score=117.22  Aligned_cols=120  Identities=8%  Similarity=-0.020  Sum_probs=85.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .+|..+..+..+|..+.+.|++++|+..+++++..+|  ..++.++|.++...+++++|+.+|++|++++|++..+|+++
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             ----------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred             CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            3466677788899999999999999999999988876  46788999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (556)
Q Consensus        89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~  130 (556)
                      |.++...|++.+|+.+|.+|+..+|..+.++.+++.++....
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999998876544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=2.8e-09  Score=95.37  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=94.4

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYG   65 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~a~~~lg~~~~~~g~~~   65 (556)
                      .-+....+.+...|..+...|++++|+..|.+|+++.+..                      ..++.+++.++..+|+++
T Consensus         5 ~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2           5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            3456678899999999999999999999999999997654                      256889999999999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730           66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (556)
Q Consensus        66 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  110 (556)
                      +|+.+++++++.+|.+..+|..++.+|..+|++++|+..|+++.+
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999844

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.97  E-value=1.1e-09  Score=94.51  Aligned_cols=94  Identities=16%  Similarity=0.071  Sum_probs=81.8

Q ss_pred             CCChhHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHH
Q 008730            8 NSSVSRAEELKALANEAFRA----------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGS   66 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~----------g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-----------~~~   66 (556)
                      +.+|+.+.++..+|.++...          +.+++|+..|++|++++|+++.+|+++|.+|..+|+           |++
T Consensus        25 ~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~  104 (145)
T d1zu2a1          25 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL  104 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHH
Confidence            35789999999999999854          556899999999999999999999999999988764           799


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (556)
Q Consensus        67 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A  101 (556)
                      |+++|+++++++|++..++..++.+....+.+.++
T Consensus       105 A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         105 ATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887655555444

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Uncharacterized protein SP1879
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.92  E-value=8.3e-09  Score=91.66  Aligned_cols=59  Identities=19%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             CCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          292 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       292 ~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      .++|.||+|+||++..|.++++...  ..-+.++++||++..+....           .  ..++.++||||..
T Consensus         3 ~~kI~viSD~Hgn~~al~~vl~~~~--~~~D~iih~GD~~~~~~~~~-----------~--~~~~~V~GN~D~~   61 (173)
T d3ck2a1           3 KQTIIVMSDSHGDSLIVEEVRDRYV--GKVDAVFHNGDSELRPDSPL-----------W--EGIRVVKGNMDFY   61 (173)
T ss_dssp             CEEEEEECCCTTCHHHHHHHHHHHT--TTSSEEEECSCCCSCTTCGG-----------G--TTEEECCCTTCCS
T ss_pred             CCEEEEEeccCCCHHHHHHHHHHhh--cCCCEEEECCcccCcccchh-----------h--cCCeEEecCcccc
Confidence            3579999999999999999998653  23567999999987665431           1  3688999999953

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=3.8e-09  Score=102.12  Aligned_cols=130  Identities=13%  Similarity=0.078  Sum_probs=109.8

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 008730           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---   81 (556)
Q Consensus        11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   81 (556)
                      +..+..|...|+.|...|+|++|+++|.+|+++.      +..+.++.++|.+|.++|++++|+..|++++.+.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            3457789999999999999999999999999984      2335789999999999999999999999999986654   


Q ss_pred             ---hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           82 ---PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        82 ---~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                         ..++..+|.+|.. .|++++|+..|++|+++.+..      ..++..++.++..+|+  +++|+..+.
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~--y~~A~~~~~  182 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--YIEASDIYS  182 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh--HHHHHHHHH
Confidence               6688899998866 699999999999999885432      3457888888888887  788887765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.3e-09  Score=91.17  Aligned_cols=87  Identities=16%  Similarity=0.134  Sum_probs=76.9

Q ss_pred             CChhHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 008730            9 SSVSRAEELKALANEAFRA---KKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK   83 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~---g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   83 (556)
                      .+|..+++++++|.++.+.   +++++|+..|+++++.+|..  ..+++++|.+|.++|+|++|+.+|+++++++|++..
T Consensus        28 ~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          28 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence            4577889999999999874   46667999999999998765  458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q 008730           84 GYYRRGAAYLAM   95 (556)
Q Consensus        84 ~~~~lg~~~~~~   95 (556)
                      +...++.+..+.
T Consensus       108 A~~l~~~I~~~~  119 (122)
T d1nzna_         108 AKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988877654

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Phosphodiesterase yfcE
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=7.2e-10  Score=99.76  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh--------HHHHHHHHhccccCCCeEEEecccccc
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--------VEVILTLFAFKCMCPSAIYLSRGNHES  364 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--------~e~l~~l~~lk~~~p~~v~~lrGNHE~  364 (556)
                      +||.||||+||++..|.++++.+... ..+.+|++||++|+|+.+        .+++..+..+    ...++.++||||.
T Consensus         2 Mki~iiSDiHg~~~al~~vl~~~~~~-~~D~iv~~GDiv~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~GNhD~   76 (184)
T d1su1a_           2 MKLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEV----AHKVIAVRGNCDS   76 (184)
T ss_dssp             CEEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTT----GGGEEECCCTTCC
T ss_pred             cEEEEEeecCCCHHHHHHHHHHHhhc-CCCEEEEcCcccccCccchhhhccCcHHHHHHHHhc----CCcEEEecCCCCc
Confidence            57999999999999999999876533 345799999999999764        3455555444    3578999999997


Q ss_pred             ccc
Q 008730          365 KSM  367 (556)
Q Consensus       365 ~~~  367 (556)
                      ...
T Consensus        77 ~~~   79 (184)
T d1su1a_          77 EVD   79 (184)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            543

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.9e-08  Score=90.00  Aligned_cols=64  Identities=20%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             CcceEeccCCCCHHH--HHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          293 KHFTVCGDVHGQFYD--LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       293 ~~i~vigDiHG~~~~--l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      |+|.||||+||+...  |...+...-....-+.+|++||+++     .|++++|..+.    ..++.++||||..
T Consensus         1 MkI~viSD~H~~~~~~~l~~~~~~~~~~~~~D~Ii~~GDi~~-----~e~l~~l~~~~----~~v~~V~GN~D~~   66 (182)
T d1z2wa1           1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDEN   66 (182)
T ss_dssp             CEEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCC
T ss_pred             CEEEEEeecCCCCcchhhHHHHHHHhcccCCCEEEEccCccc-----hhhHHHHHhhC----CceEEEeCCcCcc
Confidence            579999999997644  2233332211223467999999985     68998887764    3688999999954

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Cryptosporidium parvum [TaxId: 5807]

Probab=98.80  E-value=6.4e-09  Score=94.20  Aligned_cols=125  Identities=20%  Similarity=0.297  Sum_probs=82.2

Q ss_pred             ceEeccCCCCHHH------HHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccc
Q 008730          295 FTVCGDVHGQFYD------LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN  368 (556)
Q Consensus       295 i~vigDiHG~~~~------l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~  368 (556)
                      |.||||+||....      +.++++.-    .-+.+|++||+++     .+|+++|..+.    ..++.++||||.....
T Consensus         6 IlviSD~H~~~~~~~l~~~~~~~~~~~----~vD~ii~~GDi~~-----~~~l~~l~~l~----~~v~~V~GN~D~~~~~   72 (193)
T d2a22a1           6 VLLIGDLKIPYGAKELPSNFRELLATD----KINYVLCTGNVCS-----QEYVEMLKNIT----KNVYIVSGDLDSAIFN   72 (193)
T ss_dssp             EEEECCCCTTTTCSSCCGGGHHHHHCT----TCCEEEECSCCCC-----HHHHHHHHHHC----SCEEECCCTTCCSCCB
T ss_pred             EEEEeCCCCCcccchhhHHHHHHhccC----CCCEEEECCCCCC-----HHHHHHHHhhC----CCEEEEcCCCCcchhh
Confidence            8899999986432      45565532    2357999999996     48899887774    3688999999975443


Q ss_pred             cccCchhhHHhhhhHHHHHHHHHHhccccccccc--C-CeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcC
Q 008730          369 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS  445 (556)
Q Consensus       369 ~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i--~-~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~  445 (556)
                      ...                   ++...+|....+  + .+++++||-...                           .|.
T Consensus        73 ~~~-------------------~~~~~lp~~~~~~~~~~~i~l~H~~~~~---------------------------~~~  106 (193)
T d2a22a1          73 PDP-------------------ESNGVFPEYVVVQIGEFKIGLMHGNQVL---------------------------PWD  106 (193)
T ss_dssp             CCG-------------------GGTBCCCSEEEEEETTEEEEEECSTTSS---------------------------STT
T ss_pred             hhH-------------------HHHhhCCccEEEEECCEEEEEEeccCCC---------------------------CCC
Confidence            221                   233456654433  3 367888863311                           111


Q ss_pred             CCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCe
Q 008730          446 DPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK  499 (556)
Q Consensus       446 dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~  499 (556)
                                         .++.+.++.+..+.+++|-||+-++. . ...+++
T Consensus       107 -------------------~~~~l~~~~~~~~~dvvi~GHTH~~~-~-~~~~g~  139 (193)
T d2a22a1         107 -------------------DPGSLEQWQRRLDCDILVTGHTHKLR-V-FEKNGK  139 (193)
T ss_dssp             -------------------CHHHHHHHHHHHTCSEEEECSSCCCE-E-EEETTE
T ss_pred             -------------------CHHHHHHHHhhcCCCEEEEcCccCce-E-EEECCE
Confidence                               24567778888899999999999753 2 334553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=7e-08  Score=94.68  Aligned_cols=115  Identities=13%  Similarity=0.112  Sum_probs=97.2

Q ss_pred             HccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730           26 RAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----------EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (556)
Q Consensus        26 ~~g~-~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   94 (556)
                      ..++ .++|++.++++++.+|++..+|..++.++..++          ++++|+..++++++.+|+++.+|+.+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            4444 489999999999999999999988887766554          48999999999999999999999999999988


Q ss_pred             cCC--HHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHhhhhHHHHhcCCC
Q 008730           95 MGK--FKEALKDFQQVKKLSPNDPDAAQ-KVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        95 ~g~--~~~A~~~~~~al~l~p~~~~~~~-~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .++  +++|+..++++++++|.+..++. ..+.++...+.  +++|++...
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~Al~~~~  168 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTD  168 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--HHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc--cHHHHHHHH
Confidence            875  89999999999999999988865 55566665555  677776655

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=3.1e-08  Score=95.46  Aligned_cols=131  Identities=16%  Similarity=0.065  Sum_probs=105.0

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCC--
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPR--   80 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~--   80 (556)
                      .+..+..+.++|.+|...|++++|+++|++++++.+..      ..++..+|.++.. .|++++|+..|++|+++.+.  
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45567889999999999999999999999999987655      5778889988865 69999999999999987433  


Q ss_pred             ----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           81 ----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        81 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                          ...++.++|.++..+|+|++|+..|++++...+.+..       .+...+.++...+.  +.+|...+.
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d--~~~A~~~~~  223 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ  223 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence                2557899999999999999999999999999887642       33455555554444  555544443

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Uncharacterized protein Aq 1956
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.65  E-value=3.9e-08  Score=92.20  Aligned_cols=73  Identities=8%  Similarity=0.074  Sum_probs=53.2

Q ss_pred             CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhc-------------------------
Q 008730          293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF-------------------------  347 (556)
Q Consensus       293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~l-------------------------  347 (556)
                      .||++|+||||+++.|.++++.+.-. ..|.+|+.||++|.+..+.+...+...+                         
T Consensus         3 ~ri~~isD~h~~~~~l~~l~~~~~~~-~~D~vli~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~   81 (257)
T d2yvta1           3 RKVLAIKNFKERFDLLPKLKGVIAEK-QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE   81 (257)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHHHHHH-CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHhhc-CCCEEEEecccCCCCCCCHHHHHHHHhhhhhceeeeccccccchhhHHHHHHH
Confidence            57999999999999999988766543 3456999999999887665443332221                         


Q ss_pred             cccCCCeEEEecccccccc
Q 008730          348 KCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       348 k~~~p~~v~~lrGNHE~~~  366 (556)
                      -...+-.++++.||||...
T Consensus        82 L~~~~~pv~~i~GNHD~~~  100 (257)
T d2yvta1          82 IGELGVKTFVVPGKNDAPL  100 (257)
T ss_dssp             HHTTCSEEEEECCTTSCCH
T ss_pred             HHhcCCcEEEEeCCCcchh
Confidence            1123457999999999653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.64  E-value=1.1e-08  Score=97.36  Aligned_cols=120  Identities=14%  Similarity=0.106  Sum_probs=96.4

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 008730           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE  100 (556)
Q Consensus        21 g~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~  100 (556)
                      +..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          101 ALKDFQQVKKL-SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       101 A~~~~~~al~l-~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +...+.+.... .|.....+...+.+....++  .++|.+...
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd--~~~A~~~~~  123 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQD--YEQVSELAL  123 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            76665544333 34444445555555555555  566655443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.6e-09  Score=107.22  Aligned_cols=119  Identities=8%  Similarity=-0.001  Sum_probs=77.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 008730           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK   99 (556)
Q Consensus        20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   99 (556)
                      ++......+.|++|+..+.+++.++|.+..++.++|.++.+.+++++|+..+++++..+|  ..++.++|.++...++++
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHH
Confidence            355566778899999999999999999999999999999999999999999999999887  468999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       100 ~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      +|+.+|++|++++|++..++..+|.++...++  ..+|+..+.
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~--~~~A~~~y~  210 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGD--HLTTIFYYC  210 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999998887  455655554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=1.2e-07  Score=91.94  Aligned_cols=129  Identities=14%  Similarity=-0.004  Sum_probs=106.5

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   81 (556)
                      +++..++.....|.+++..|++++|+..|+++++..|.+     ..++..+|.++...|++++|+..|++++++.+..  
T Consensus         7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            455667888889999999999999999999999999987     4578899999999999999999999999875543  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHhhhhHHHHhc
Q 008730           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--------DPDAAQKVKECEKAVKKLKFEEAIA  139 (556)
Q Consensus        82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~l~~~~~~~~~~~~~~Ai~  139 (556)
                          ..++..++.++...|++..|...+.+++.+.+.        .......++.++...++  ++++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~a~~  154 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEA  154 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc--hhhhHH
Confidence                467889999999999999999999999987432        12355667777777776  344433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.56  E-value=6.1e-08  Score=84.26  Aligned_cols=93  Identities=18%  Similarity=0.096  Sum_probs=77.2

Q ss_pred             HHHHHHH--HHHHHHhhCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           48 AVYYANR--AFAHTKLEEYGSAIQDASKAIEIDPRYP------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        48 ~~a~~~l--g~~~~~~g~~~~A~~~~~~al~l~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      +.++..+  |..++..|+|++|+..|++|++++|+.+            .+|.++|.+|..+|++++|+..+++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3445555  7788899999999999999999988753            5799999999999999999999999999754


Q ss_pred             C-----------CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730          114 N-----------DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus       114 ~-----------~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      .           ...++..+|.++..+|+  +++|++.+.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~--~eeA~~~~~  124 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFK  124 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHH--HHHHHHHHH
Confidence            2           23467889999999998  677777665

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=7.3e-07  Score=86.27  Aligned_cols=131  Identities=14%  Similarity=0.011  Sum_probs=114.6

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   88 (556)
                      .|.....|...+......|++++|...|+++++..|.+. .+|..++....+.|+++.|...|+++++..|.....+...
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            355667888999999999999999999999999999874 5799999999999999999999999999999999999999


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730           89 GAAYLA-MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (556)
Q Consensus        89 g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~  142 (556)
                      |..... .|+.+.|...|+++++..|+++..+..++......|+  .++|..+++
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~--~~~aR~~fe  227 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE  227 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence            987554 6899999999999999999999999999988887776  445544444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=1e-06  Score=72.04  Aligned_cols=85  Identities=11%  Similarity=0.072  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008730           47 NAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (556)
Q Consensus        47 ~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  122 (556)
                      ...+.++.|-++.+.   .+.++|+..++.+++.+|.+. +++|++|.+|+++|+|++|+.+++++|+++|+|..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            378899999999876   456789999999999999774 7999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhh
Q 008730          123 KECEKAVKK  131 (556)
Q Consensus       123 ~~~~~~~~~  131 (556)
                      ..+..++.+
T Consensus       114 ~~Ie~~~~k  122 (124)
T d2pqrb1         114 SMVEDKIQK  122 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            877766543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=4.7e-06  Score=80.35  Aligned_cols=119  Identities=12%  Similarity=0.015  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   92 (556)
                      ...|...+....+.|++++|...|+++++..|.+...+...|..... .|+.+.|...|++++..+|+++..|...+..+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            45688889999999999999999999999999999999999886544 58999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhh
Q 008730           93 LAMGKFKEALKDFQQVKKLSPNDP----DAAQKVKECEKAVKKL  132 (556)
Q Consensus        93 ~~~g~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~  132 (556)
                      ...|+++.|+..|++|++..|.++    ..+..........|+.
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999887554    4666666666666653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=1.4e-06  Score=77.20  Aligned_cols=94  Identities=10%  Similarity=0.020  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHH
Q 008730           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----------------------PKGYYRRGAAYLAMGKFKEALKDF  105 (556)
Q Consensus        48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~  105 (556)
                      .+.+...|......|++++|++.|++|+.+.+..                      ..++.+++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4567889999999999999999999999987643                      257899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730          106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (556)
Q Consensus       106 ~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~  143 (556)
                      +++++++|.+..++..++.++...|+  ..+|+..+..
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr--~~eAl~~y~~  126 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDR--QSDALGAYRR  126 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHHH
Confidence            99999999999999999999999998  6788777663

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.26  E-value=3.4e-07  Score=86.67  Aligned_cols=112  Identities=11%  Similarity=-0.044  Sum_probs=98.6

Q ss_pred             CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-hCCCChHHHH
Q 008730            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-IDPRYPKGYY   86 (556)
Q Consensus         8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~   86 (556)
                      +.+|+++..+..+|..+...|++++|+..|+++++++|++..++..++.++...+..+++...+.+... .+|.....+.
T Consensus        24 ~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l  103 (264)
T d1zbpa1          24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSL  103 (264)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHH
Confidence            467899999999999999999999999999999999999999999999999888888877766555433 3566677888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (556)
Q Consensus        87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  119 (556)
                      ..+.++...|++++|+..++++.+..|..+..+
T Consensus       104 ~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1         104 VSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            899999999999999999999999999877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=2.2e-06  Score=82.54  Aligned_cols=104  Identities=15%  Similarity=0.012  Sum_probs=90.8

Q ss_pred             ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CC
Q 008730           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DP   79 (556)
Q Consensus        10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p   79 (556)
                      .+..+..+...|..+...|++++|...++++++..|.+    ...+.++|.++...|++++|+..+++++..      .|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  288 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS  288 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh
Confidence            34556778889999999999999999999999987765    466788999999999999999999999854      34


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (556)
Q Consensus        80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  113 (556)
                      ....++..+|.+|..+|++++|++.+++|+++.+
T Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            5678999999999999999999999999999754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=1.2e-05  Score=65.45  Aligned_cols=82  Identities=9%  Similarity=-0.022  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730           12 SRAEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (556)
Q Consensus        12 ~~a~~~~~lg~~~~~~g---~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   87 (556)
                      ..+++.++.|.++.+..   +.++|+..++++++.+|.+. ++++++|.+|+++|+|++|..+++++++++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            34788899999998765   45689999999999999775 799999999999999999999999999999999988776


Q ss_pred             HHHHHH
Q 008730           88 RGAAYL   93 (556)
Q Consensus        88 lg~~~~   93 (556)
                      +-.+..
T Consensus       113 ~~~Ie~  118 (124)
T d2pqrb1         113 KSMVED  118 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=4.5e-05  Score=71.15  Aligned_cols=108  Identities=18%  Similarity=0.255  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (556)
Q Consensus        14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg   89 (556)
                      +.+++.+|..++..+|+++|+++|++|.+.  .++.+++++|.+|..    ..++..|..+++++....  ++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            678999999999999999999999999775  689999999999988    668999999999987664  788899999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730           90 AAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus        90 ~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      .++..    ..+.+.|...++++....+  ..+...++..+.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~  117 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYH  117 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhccccc
Confidence            98876    4678999999999988754  555556665543

>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DNA double-strand break repair nuclease
domain: Mre11
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.63  E-value=2e-05  Score=76.10  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             CcceEeccCC-C------------CHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhcc---ccCCCeEE
Q 008730          293 KHFTVCGDVH-G------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK---CMCPSAIY  356 (556)
Q Consensus       293 ~~i~vigDiH-G------------~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk---~~~p~~v~  356 (556)
                      ||++.++|+| |            .+..|.++++.+.-. ..+.+|+.||++|++.-+.+.+..+....   ...+-.|+
T Consensus         1 Mkilh~SDlHlG~~~~~~~~~~~~~~~~l~~iv~~a~~~-~~D~vli~GDlfd~~~~~~~~~~~~~~~~~~l~~~~i~v~   79 (333)
T d1ii7a_           1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVF   79 (333)
T ss_dssp             CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             CEEEEEecCcCCCCCcCchhHHHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHhhHHhcCCcEE
Confidence            5799999999 3            234455555544322 34569999999999877777666543321   22334699


Q ss_pred             Eeccccccc
Q 008730          357 LSRGNHESK  365 (556)
Q Consensus       357 ~lrGNHE~~  365 (556)
                      ++.||||..
T Consensus        80 ~i~GNHD~~   88 (333)
T d1ii7a_          80 AIEGNHDRT   88 (333)
T ss_dssp             EECCTTTCC
T ss_pred             EeCCCCccc
Confidence            999999964

>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Hypothetical protein aq 1666
domain: Hypothetical protein aq 1666
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.58  E-value=4e-05  Score=68.06  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=32.4

Q ss_pred             CCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730          320 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  365 (556)
Q Consensus       320 ~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~  365 (556)
                      +.|.+++|||+..+....-+.+.+|-.|    |++.++|+||||..
T Consensus        43 ~~D~v~~LGD~~~~~~~~~~~~~~l~~L----~g~~~lI~GNHD~~   84 (188)
T d1xm7a_          43 PEDTLYHLGDFTWHFNDKNEYLRIWKAL----PGRKILVMGNHDKD   84 (188)
T ss_dssp             TTCEEEECSCCBSCSCCTTSHHHHHHHS----SSEEEEECCTTCCC
T ss_pred             CCCEEEEeCCccccCCCHHHHHHHHHHC----CCceEEEecCCCch
Confidence            4677999999987655455677777666    46889999999964

>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Rv0805 cyclic nucleotide phosphodiesterase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=8.1e-05  Score=69.32  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             CCcceEeccCCCC------------HHHHHHHHHhcCC-CCCCCCeeeecccccCCCCh-HH-HHHHHHhccccCCCeEE
Q 008730          292 GKHFTVCGDVHGQ------------FYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFS-VE-VILTLFAFKCMCPSAIY  356 (556)
Q Consensus       292 ~~~i~vigDiHG~------------~~~l~~~l~~~~~-~~~~~~~vflGD~vdrG~~s-~e-~l~~l~~lk~~~p~~v~  356 (556)
                      ..+|+.|+|+|=.            .+.|.++++.+.. .+..+.+|..||+++.|... .+ ....+..+....+-.++
T Consensus         4 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~pD~vl~~GDl~~~g~~~~~~~~~~~l~~~~~~~~~p~~   83 (256)
T d2hy1a1           4 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV   83 (256)
T ss_dssp             SEEEEEECCCCBC----------CHHHHHHHHHHHHHHHTCCCSEEEECSCCBSSCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             CEEEEEEeeCccCCCCcccccCcCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCChhHHHHHHHHhhhhhhhcCCCEE
Confidence            4679999999921            2346666665421 22346799999999998643 12 22233323223345799


Q ss_pred             Eecccccc
Q 008730          357 LSRGNHES  364 (556)
Q Consensus       357 ~lrGNHE~  364 (556)
                      +++||||.
T Consensus        84 ~v~GNHD~   91 (256)
T d2hy1a1          84 WVMGNHDD   91 (256)
T ss_dssp             ECCCTTSC
T ss_pred             EEcccccc
Confidence            99999994

>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Glycerophosphodiesterase GpdQ
species: Enterobacter aerogenes [TaxId: 548]

Probab=97.45  E-value=8.3e-05  Score=70.01  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=46.3

Q ss_pred             CcceEeccCC---------CC---HHHHHHHHHhcC-CCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEec
Q 008730          293 KHFTVCGDVH---------GQ---FYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR  359 (556)
Q Consensus       293 ~~i~vigDiH---------G~---~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lr  359 (556)
                      |+|..|+|+|         |.   ...+.++++.+. ....-+.+|+.||++|+|..  +.+..+...-...+-.+++++
T Consensus         1 M~i~hiSD~Hl~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~D~vv~~GDl~~~~~~--~~y~~~~~~l~~l~~p~~~i~   78 (271)
T d3d03a1           1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRP--EEYQVARQILGSLNYPLYLIP   78 (271)
T ss_dssp             CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--HHHHHHHHHHTTCSSCEEEEC
T ss_pred             CEEEEEecCcCCCCccccccCcCHHHHHHHHHHHHHhcCCCCCEEEECcccCcCCcc--hhHHHHHHHHhccCCCEEEEe
Confidence            4689999999         21   244666666543 23345679999999998853  333333332223345689999


Q ss_pred             cccccc
Q 008730          360 GNHESK  365 (556)
Q Consensus       360 GNHE~~  365 (556)
                      ||||..
T Consensus        79 GNHD~~   84 (271)
T d3d03a1          79 GNHDDK   84 (271)
T ss_dssp             CTTSCH
T ss_pred             cCccch
Confidence            999963

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.43  E-value=0.00082  Score=55.44  Aligned_cols=93  Identities=24%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHH
Q 008730           28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEALK  103 (556)
Q Consensus        28 g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~  103 (556)
                      .|+++|+.+|+++.+..  ++.+...+|.  ....++++|+.+++++.+.  .++.+++.+|.+|..    ..++++|++
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            46777777777777654  4445555553  2345677777777777654  467777777777765    456777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730          104 DFQQVKKLSPNDPDAAQKVKECEKA  128 (556)
Q Consensus       104 ~~~~al~l~p~~~~~~~~l~~~~~~  128 (556)
                      +|+++.+.  .++.+...++.++..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHc
Confidence            77777665  457777777777654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.40  E-value=0.00049  Score=56.87  Aligned_cols=84  Identities=20%  Similarity=0.123  Sum_probs=73.1

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCC
Q 008730           26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGK   97 (556)
Q Consensus        26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~   97 (556)
                      ...++++|+..|+++.+.  .++.+.+.+|..|..    ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            456899999999999875  689999999999886    45799999999999876  578999999999988    568


Q ss_pred             HHHHHHHHHHHHHhCC
Q 008730           98 FKEALKDFQQVKKLSP  113 (556)
Q Consensus        98 ~~~A~~~~~~al~l~p  113 (556)
                      +++|+.+|++|.++..
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999998753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.32  E-value=0.00065  Score=62.86  Aligned_cols=94  Identities=15%  Similarity=0.258  Sum_probs=45.9

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHH
Q 008730           28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFK   99 (556)
Q Consensus        28 g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~   99 (556)
                      .....|+..+.+...  +.+..++..+|..+..    ..+...+...++++.+  +.++.+++++|.+|..    ..+++
T Consensus       124 ~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         124 RDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             chhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchh
Confidence            344444444444333  3344555555555544    2234445555555443  2345555555555554    34555


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730          100 EALKDFQQVKKLSPNDPDAAQKVKECEK  127 (556)
Q Consensus       100 ~A~~~~~~al~l~p~~~~~~~~l~~~~~  127 (556)
                      +|+.+|+++.+.  +++.+...++.++.
T Consensus       200 ~A~~~~~~aa~~--g~~~a~~~LG~~y~  225 (265)
T d1ouva_         200 EALARYSKACEL--ENGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             hhhhhHhhhhcc--cCHHHHHHHHHHHH
Confidence            555555555554  24555555555544

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: ADPRibase-Mn-like
domain: Uncharacterized C17orf48 homolog zgc:64213
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=96.45  E-value=0.00057  Score=64.36  Aligned_cols=72  Identities=21%  Similarity=0.104  Sum_probs=46.7

Q ss_pred             cceEeccCCCC-------------------HHHHHHHHHhcCCCCCCCCeeeecccccCCC----ChHHHHHHHHhcccc
Q 008730          294 HFTVCGDVHGQ-------------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGS----FSVEVILTLFAFKCM  350 (556)
Q Consensus       294 ~i~vigDiHG~-------------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~----~s~e~l~~l~~lk~~  350 (556)
                      ++.||+|+|=.                   ...|.++++.+... .-+-+|++||++|.+.    ...+.+..+...-..
T Consensus         5 ~f~~isD~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~i~~~-~~DfVv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T d2nxfa1           5 TFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRE-RVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDA   83 (320)
T ss_dssp             EEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCCCCCCCccccccccchhhHHHHHHHHHHHHHHhhC-CCCEEEECCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            48899999921                   34455555544322 2356999999999762    334445444443334


Q ss_pred             CCCeEEEecccccccc
Q 008730          351 CPSAIYLSRGNHESKS  366 (556)
Q Consensus       351 ~p~~v~~lrGNHE~~~  366 (556)
                      .+..++.+.||||...
T Consensus        84 ~~~p~~~v~GNHD~~~   99 (320)
T d2nxfa1          84 CSVDVHHVWGNHEFYN   99 (320)
T ss_dssp             TCSEEEECCCHHHHHH
T ss_pred             cCCCEEEecccCcccc
Confidence            5678999999999643

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Plant purple acid phosphatase, catalytic domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.48  E-value=0.0067  Score=57.68  Aligned_cols=71  Identities=21%  Similarity=0.174  Sum_probs=43.1

Q ss_pred             cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccc-cCCCC---hH---HHHHHHHhccccCCCeEEEecccccccc
Q 008730          294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV-DRGSF---SV---EVILTLFAFKCMCPSAIYLSRGNHESKS  366 (556)
Q Consensus       294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~v-drG~~---s~---e~l~~l~~lk~~~p~~v~~lrGNHE~~~  366 (556)
                      ++.|+||++........+..........+-+|++||++ +.|..   ..   +-+..+..+....|  ++.++||||...
T Consensus         9 ~F~v~GD~g~~~~~~~~~~~~~~~~~~pdfvl~~GDl~Y~~~~~~~~~~~wd~~~~~~~~~~~~~P--~~~~~GNHD~~~   86 (312)
T d2qfra2           9 TFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQP--WIWTAGNHEIEF   86 (312)
T ss_dssp             EEEEECSCCSBHHHHHHHHHHHHCSSCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTSC--EEECCCGGGTCC
T ss_pred             EEEEEeeCCCCCchHHHHHHHHHcCCCCCEEEECCCCCcCCCCcccchHHHHHHHHHHHHHhhcce--EEEecccccccc
Confidence            58999999887777665544322223345689999997 22221   11   23333433333344  788899999643

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Mammalian purple acid phosphatase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.69  E-value=0.0035  Score=58.77  Aligned_cols=25  Identities=8%  Similarity=0.093  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHCCCCEEEeecccccc
Q 008730          466 ADVTKRFLQDNSLDLVVRSHEVKDE  490 (556)
Q Consensus       466 ~~~~~~fl~~~~~~~iir~H~~~~~  490 (556)
                      ...+...++++++.+++-||.-.-+
T Consensus       200 ~~~~~~ll~~~~v~~~~~GH~H~~~  224 (302)
T d1utea_         200 VKQLLPLLTTHKVTAYLCGHDHNLQ  224 (302)
T ss_dssp             HHHTHHHHHHTTCSEEEECSSSSEE
T ss_pred             hhhhhHHHHhcCceEEEeCCCcceE
Confidence            5678889999999999999997543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.37  E-value=1  Score=32.22  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=26.9

Q ss_pred             CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008730            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE   42 (556)
Q Consensus         9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~   42 (556)
                      ...+.|..+-..|..+.+.|.|++|++++++|..
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456677888888999999999999888777654

>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
domain: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.03  E-value=0.46  Score=44.04  Aligned_cols=66  Identities=15%  Similarity=0.184  Sum_probs=40.5

Q ss_pred             ceEeccCCCCHH-----------------HHHHHHHhcCCCCCCCCeeeecccccCCC-----ChHHHHHHHHhccccCC
Q 008730          295 FTVCGDVHGQFY-----------------DLLNIFELNGLPSEENPYLFNGDFVDRGS-----FSVEVILTLFAFKCMCP  352 (556)
Q Consensus       295 i~vigDiHG~~~-----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~-----~s~e~l~~l~~lk~~~p  352 (556)
                      |+-+.|+||++.                 .+..++++..-...+..++..||.+...+     ....++..+-.+.    
T Consensus         5 IlhtnD~Hg~l~~~~~~~~~~~~~~gG~ar~~t~i~~~r~~~~~~l~ldaGD~~~Gs~~~~~~~g~~~~~~~n~~g----   80 (302)
T d2z1aa2           5 LVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRLR----   80 (302)
T ss_dssp             EEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHTT----
T ss_pred             EEEEcccccCcccccccccCCccccCcHHHHHHHHHHHHHhCCCeEEEEcCCCCCCCHhHhhhcchhHHHHHHhcc----
Confidence            778899999763                 45556665432223346889999997554     3344444444443    


Q ss_pred             CeEEEeccccccc
Q 008730          353 SAIYLSRGNHESK  365 (556)
Q Consensus       353 ~~v~~lrGNHE~~  365 (556)
                       -=.+..||||.-
T Consensus        81 -yDa~~~GNHEfd   92 (302)
T d2z1aa2          81 -YRAMALGNHEFD   92 (302)
T ss_dssp             -CCEEECCGGGGT
T ss_pred             -cccccccchhhh
Confidence             224458999974