Citrus Sinensis ID: 008736

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
MRVNVDLFDPQSNMDSDFSSGLPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKKDTVDVLVQREQILQCNMPDTEDGVAYENQDDEPEAMVEESPADVGLNLKQCGEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ
cccccccccccccccccccccccccccEEEcccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHccccccccccEEEEEEccEEEEcHHHHHHcccHHHHHHHccccccccccEEEEEEccccHHHHHHHHHccccccEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccccccEEEEEEccEEEEEEEccccccccEEEEcccEEEEEEEEEcccEEEEccEEcccccccEEEEEEEEcccccccEEEEEEccEEEEcccccccccccccEEEEEcccccccccccccccEEEEEccccEEEccEEEEEEEEEEcc
cccccccccccccccccccccccccccEEEEccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccHccccccccccccEEEEEcccccHcccccccccHHHccccccccccccEEEEEEcEEccHEEEEcccHHHHHHHcccccHccccEEEEEEccccHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHccccccccccEEcccccccccEEEEEEccccccEEEEEcccHHHHHHHcccccEEEEEEEEccccEEEEEccccccccccEEEEEEEEEcccccEEEEEEEEEEEEccccccEEEcEcccEEEccccEcccccccccccHHHHcccccEHEccEEEEEEEEEEcc
mrvnvdlfdpqsnmdsdfssglpdsdfgfafndsnfsdrvlrieimpdlpdsksdgdacSSIADWARNRKRRREEIKKDTVDVLVQREQILqcnmpdtedgvayenqddepeamveespadvglnlkqcgeeatgnidpawsmdlSTVLRVKTVHisspilaakspFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYsstlstttpTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESAllyldlpssvlmadavqpLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVlasddlqiasEDAVYDFALKWARTHYPKLEERREILGSRLgrlirfpymTCRKLKKvltcndfdpelaSKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERaykyrpvkvvefelprqqcvVYLDLKreecahlfpagriysqafhlggqgfflsahcnmdqqssfhcfglflgmqekgsvSFAVDYEFaarikpteeyVSKYkgnytftggkavgyrnlfgipwtafmaddsiyfINGNLHLRAELTIRQ
mrvnvdlfdpqsnmdsdfsSGLPDSDFGFAFNDSNFSDRVLRIEIMpdlpdsksdgdacsSIADwarnrkrrreeikkdtvdvlVQREqilqcnmpdtedGVAYENQDDEPEAMVEESPADVGLNLKQCGEEATGNIDPAWSMDLSTVLRVKTVHIsspilaakspFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARthypkleerreilgsrlgrlirfpYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQRalaaeeanstyRRFVERAYKYrpvkvvefelprQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAArikpteeyvskYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ
MRVNVDLFDPQSNMDSDFSSGLPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWArnrkrrreeikkDTVDVLVQREQILQCNMPDTEDGVAYENQDDEPEAMVEESPADVGLNLKQCGEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYsstlstttptallDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ
***************************GFAFNDSNFSDRVLRIEI**********************************TVDVLVQREQILQC********************************LKQCGEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAEL****
***NVDLFDPQ***************FGFAFNDSNFSDRVLRIEIMP*****************************************************************************************IDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFK********************RFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIR*
MRVNVDLFDPQSNMDSDFSSGLPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKKDTVDVLVQREQILQCNMPDTEDGVAYENQDDEPEAMVEESPADVGLNLKQCGEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ
*******FDPQSNMDSDFSSGLPDSDFGFAFNDSNFSDRVLRIEIMPDL******************NRKRRREEIKKDTVDVLVQREQILQCNMPDTEDGVAYENQDDEPEAMVEESPA*******************AWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRVNVDLFDPQSNMDSDFSSGLPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKKDTVDVLVQREQILQCNMPDTEDGVAYENQDDEPEAMVEESPADVGLNLKQCGEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query555 2.2.26 [Sep-21-2011]
Q9FPW6561 BTB/POZ domain-containing yes no 0.978 0.967 0.748 0.0
O82343561 BTB/POZ domain-containing no no 0.976 0.966 0.745 0.0
O04615527 BTB/POZ domain-containing no no 0.933 0.982 0.570 1e-166
Q8NFY9 601 Kelch repeat and BTB doma yes no 0.340 0.314 0.272 2e-11
B1H285 575 Kelch repeat and BTB doma yes no 0.326 0.314 0.273 4e-11
Q3UQV5 599 Kelch repeat and BTB doma yes no 0.356 0.330 0.263 4e-11
Q6TDP4 642 Kelch-like protein 17 OS= no no 0.347 0.300 0.271 9e-11
O94889 574 Kelch-like protein 18 OS= no no 0.277 0.268 0.293 2e-10
Q8K430 640 Kelch-like protein 17 OS= no no 0.347 0.301 0.271 3e-10
Q6TDP3 640 Kelch-like protein 17 OS= no no 0.347 0.301 0.271 3e-10
>sp|Q9FPW6|POB1_ARATH BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2 Back     alignment and function desciption
 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/560 (74%), Positives = 475/560 (84%), Gaps = 17/560 (3%)

Query: 4   NVDLFDPQSNMDSDFS--SGLPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSS 61
           N DLFDP++ MD DF+      D DFGFAFNDSNFSDR+LRIEIM    DS+S+ + C+S
Sbjct: 7   NTDLFDPKTQMDPDFTRHGSSSDGDFGFAFNDSNFSDRLLRIEIMGGPSDSRSEVEGCTS 66

Query: 62  IADWARNRKRRREEIKKD---TVDVLVQ--REQILQCNMPDTEDGVAYENQDDEP-EAMV 115
           IADWAR+RKRRRE+IKK+   T+  +V    EQIL    PD +     EN DDE  EAMV
Sbjct: 67  IADWARHRKRRREDIKKESGVTISDIVACPEEQILTDEQPDMDGCPGGENPDDEGGEAMV 126

Query: 116 EESPADVGLNLKQCGEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNG 175
           EE+ +         G+E   + +P W MD STV+RVK +HISSPILAAKSPFFYKLFSNG
Sbjct: 127 EEALS---------GDEEETSSEPNWGMDCSTVVRVKELHISSPILAAKSPFFYKLFSNG 177

Query: 176 MRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYC 235
           MRESEQR+VTLRI+ASEEAALMELLNFMYS+ +S TT  ALLDVLMAADKFEVASCMRYC
Sbjct: 178 MRESEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYC 237

Query: 236 SRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 295
           SRLLRN+PMT ESALLYL+LPSSVLMA AVQPLTD AKQFLAARYKDI+KF EEV++LPL
Sbjct: 238 SRLLRNMPMTPESALLYLELPSSVLMAKAVQPLTDAAKQFLAARYKDITKFHEEVMSLPL 297

Query: 296 AGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKL 355
           AGIEA+L+SD+LQIASEDAVYDF LKWAR  YP LEERREILGSRL   IRFP+MTCRKL
Sbjct: 298 AGIEAILSSDELQIASEDAVYDFILKWARAQYPCLEERREILGSRLALSIRFPFMTCRKL 357

Query: 356 KKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVV 415
           KKVLTC+DF+ E+ASK+VLE+LFFKAE P+RQR+LA+EE+ S  RR +ERAYKYRPVKVV
Sbjct: 358 KKVLTCSDFEHEIASKLVLEALFFKAEAPHRQRSLASEESASLNRRLIERAYKYRPVKVV 417

Query: 416 EFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGL 475
           EFELPR QCVVYLDLKREEC  LFP+GR+YSQAFHLGGQGFFLSAHCNMDQQSSFHCFGL
Sbjct: 418 EFELPRPQCVVYLDLKREECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGL 477

Query: 476 FLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMAD 535
           FLGMQEKGSVSF VDYEF+AR KP E+++SKYKGNYTFTGGKAVGYRNLFG+PWT+F+A+
Sbjct: 478 FLGMQEKGSVSFGVDYEFSARSKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAE 537

Query: 536 DSIYFINGNLHLRAELTIRQ 555
           DS YFING LHLRAELTI++
Sbjct: 538 DSQYFINGILHLRAELTIKR 557
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|O82343|Y2626_ARATH BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana GN=At2g46260 PE=2 SV=2 Back     alignment and function description
>sp|O04615|Y4116_ARATH BTB/POZ domain-containing protein At4g01160 OS=Arabidopsis thaliana GN=At4g01160 PE=3 SV=1 Back     alignment and function description
>sp|Q8NFY9|KBTB8_HUMAN Kelch repeat and BTB domain-containing protein 8 OS=Homo sapiens GN=KBTBD8 PE=2 SV=2 Back     alignment and function description
>sp|B1H285|KBTB8_RAT Kelch repeat and BTB domain-containing protein 8 OS=Rattus norvegicus GN=Kbtbd8 PE=2 SV=1 Back     alignment and function description
>sp|Q3UQV5|KBTB8_MOUSE Kelch repeat and BTB domain-containing protein 8 OS=Mus musculus GN=Kbtbd8 PE=2 SV=1 Back     alignment and function description
>sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17 OS=Homo sapiens GN=KLHL17 PE=2 SV=1 Back     alignment and function description
>sp|O94889|KLH18_HUMAN Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE=2 SV=3 Back     alignment and function description
>sp|Q8K430|KLH17_RAT Kelch-like protein 17 OS=Rattus norvegicus GN=Klhl17 PE=1 SV=1 Back     alignment and function description
>sp|Q6TDP3|KLH17_MOUSE Kelch-like protein 17 OS=Mus musculus GN=Klhl17 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
147798263526 hypothetical protein VITISV_008241 [Viti 0.945 0.998 0.836 0.0
225454420553 PREDICTED: BTB/POZ domain-containing pro 0.978 0.981 0.783 0.0
255541774549 atpob1, putative [Ricinus communis] gi|2 0.974 0.985 0.778 0.0
224127832547 predicted protein [Populus trichocarpa] 0.972 0.987 0.772 0.0
224064139556 predicted protein [Populus trichocarpa] 0.978 0.976 0.762 0.0
224072075561 predicted protein [Populus trichocarpa] 1.0 0.989 0.761 0.0
356573187553 PREDICTED: BTB/POZ domain-containing pro 0.976 0.980 0.769 0.0
356506034553 PREDICTED: BTB/POZ domain-containing pro 0.976 0.980 0.767 0.0
449432076553 PREDICTED: BTB/POZ domain-containing pro 0.978 0.981 0.755 0.0
307136357552 ATPOB protein binding [Cucumis melo subs 0.974 0.980 0.756 0.0
>gi|147798263|emb|CAN63457.1| hypothetical protein VITISV_008241 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/537 (83%), Positives = 481/537 (89%), Gaps = 12/537 (2%)

Query: 19  SSGLPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKK 78
           +  + DSDF FAFNDSNFSDR+LRIEI+ DLP+SK DG+ C+SIADWARNRKRRREEIKK
Sbjct: 2   AGSVSDSDFAFAFNDSNFSDRLLRIEIIADLPESKGDGEGCNSIADWARNRKRRREEIKK 61

Query: 79  DTVDVLVQREQILQCNMPDTEDGVAYENQDDEPEAMVEESPADVGLNLKQCGEEATGNID 138
           +    +   EQIL CNMPDTEDGVAYENQD+E  AM+EESP          G+EA  + D
Sbjct: 62  ENAVDVHHEEQILNCNMPDTEDGVAYENQDEEAVAMIEESPP---------GDEAGHSSD 112

Query: 139 PAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALME 198
            +W MD STVLRVKT+HISSPILAAKSPFFYKLFSNGMRESEQR+VTLRIHAS +     
Sbjct: 113 SSWGMDCSTVLRVKTLHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRIHASGKYTKTL 172

Query: 199 LLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSS 258
            L F   +TLSTTTPTALLDVLMAADKFEVASCMRYCSR+LRNLPMTCESALLYLDLPSS
Sbjct: 173 SLFF---NTLSTTTPTALLDVLMAADKFEVASCMRYCSRMLRNLPMTCESALLYLDLPSS 229

Query: 259 VLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDF 318
           VLMA+AVQPLTD AKQFLA RYKD++KFQEEVLNLPLAGIEAVL+SDDLQ+ASEDAVYDF
Sbjct: 230 VLMAEAVQPLTDAAKQFLAGRYKDVTKFQEEVLNLPLAGIEAVLSSDDLQVASEDAVYDF 289

Query: 319 ALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLF 378
            LKWAR HYPKLE+RREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD ELASKVVLE+LF
Sbjct: 290 VLKWARIHYPKLEDRREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDTELASKVVLEALF 349

Query: 379 FKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHL 438
           FKAE PYRQR+LAAEEA+S+YRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREEC +L
Sbjct: 350 FKAEAPYRQRSLAAEEASSSYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECLNL 409

Query: 439 FPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIK 498
           FPAGR+YSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSV+FAVDYEFAAR K
Sbjct: 410 FPAGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVTFAVDYEFAARSK 469

Query: 499 PTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ 555
           PTEEYVSKYKGNYTFTGGKAVGYRNLFGI W AFMADDS YFING LHLRAELTIRQ
Sbjct: 470 PTEEYVSKYKGNYTFTGGKAVGYRNLFGIAWXAFMADDSHYFINGILHLRAELTIRQ 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454420|ref|XP_002279915.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541774|ref|XP_002511951.1| atpob1, putative [Ricinus communis] gi|223549131|gb|EEF50620.1| atpob1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224127832|ref|XP_002320175.1| predicted protein [Populus trichocarpa] gi|222860948|gb|EEE98490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064139|ref|XP_002301391.1| predicted protein [Populus trichocarpa] gi|222843117|gb|EEE80664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224072075|ref|XP_002303620.1| predicted protein [Populus trichocarpa] gi|222841052|gb|EEE78599.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356573187|ref|XP_003554745.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] Back     alignment and taxonomy information
>gi|356506034|ref|XP_003521793.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] Back     alignment and taxonomy information
>gi|449432076|ref|XP_004133826.1| PREDICTED: BTB/POZ domain-containing protein At2g46260-like [Cucumis sativus] gi|449480287|ref|XP_004155851.1| PREDICTED: BTB/POZ domain-containing protein At2g46260-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136357|gb|ADN34171.1| ATPOB protein binding [Cucumis melo subsp. melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
TAIR|locus:2082827561 POB1 "POZ/BTB containin G-prot 0.978 0.967 0.717 1.4e-208
TAIR|locus:2063026561 LRB1 "light-response BTB 1" [A 0.976 0.966 0.714 1.8e-206
UNIPROTKB|Q6TDP4 642 KLHL17 "Kelch-like protein 17" 0.347 0.300 0.276 3.5e-10
MGI|MGI:2678948 640 Klhl17 "kelch-like 17" [Mus mu 0.347 0.301 0.280 7.4e-10
RGD|708444 640 Klhl17 "kelch-like family memb 0.347 0.301 0.280 7.4e-10
UNIPROTKB|A4FV78 606 KBTBD10 "Uncharacterized prote 0.398 0.364 0.284 1.9e-09
UNIPROTKB|O60662 606 KLHL41 "Kelch-like protein 41" 0.398 0.364 0.280 1.9e-09
UNIPROTKB|F1PMV5 650 KBTBD10 "Uncharacterized prote 0.398 0.34 0.284 2.7e-09
MGI|MGI:2661430 599 Kbtbd8 "kelch repeat and BTB ( 0.342 0.317 0.264 6.4e-09
FB|FBgn0037978 575 KLHL18 [Drosophila melanogaste 0.342 0.330 0.255 1.7e-08
TAIR|locus:2082827 POB1 "POZ/BTB containin G-protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2017 (715.1 bits), Expect = 1.4e-208, P = 1.4e-208
 Identities = 402/560 (71%), Positives = 454/560 (81%)

Query:     4 NVDLFDPQSNMDSDFS--SGLPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSS 61
             N DLFDP++ MD DF+      D DFGFAFNDSNFSDR+LRIEIM    DS+S+ + C+S
Sbjct:     7 NTDLFDPKTQMDPDFTRHGSSSDGDFGFAFNDSNFSDRLLRIEIMGGPSDSRSEVEGCTS 66

Query:    62 IADWAXXXXXXXXXXXXD---TVDVLVQ--REQILQCNMPDTEDGVAYENQDDEP-EAMV 115
             IADWA            +   T+  +V    EQIL    PD +     EN DDE  EAMV
Sbjct:    67 IADWARHRKRRREDIKKESGVTISDIVACPEEQILTDEQPDMDGCPGGENPDDEGGEAMV 126

Query:   116 EESPADVGLNLKQCGEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNG 175
             EE+ +         G+E   + +P W MD STV+RVK +HISSPILAAKSPFFYKLFSNG
Sbjct:   127 EEALS---------GDEEETSSEPNWGMDCSTVVRVKELHISSPILAAKSPFFYKLFSNG 177

Query:   176 MRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDVLMAADKFEVASCMRYC 235
             MRESEQR+VTLRI+ASEEAALMELLNFMY             DVLMAADKFEVASCMRYC
Sbjct:   178 MRESEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYC 237

Query:   236 SRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 295
             SRLLRN+PMT ESALLYL+LPSSVLMA AVQPLTD AKQFLAARYKDI+KF EEV++LPL
Sbjct:   238 SRLLRNMPMTPESALLYLELPSSVLMAKAVQPLTDAAKQFLAARYKDITKFHEEVMSLPL 297

Query:   296 AGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKL 355
             AGIEA+L+SD+LQIASEDAVYDF LKWAR  YP LEERREILGSRL   IRFP+MTCRKL
Sbjct:   298 AGIEAILSSDELQIASEDAVYDFILKWARAQYPCLEERREILGSRLALSIRFPFMTCRKL 357

Query:   356 KKVLTCNDFDPELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVV 415
             KKVLTC+DF+ E+ASK+VLE+LFFKAE P+RQR+LA+EE+ S  RR +ERAYKYRPVKVV
Sbjct:   358 KKVLTCSDFEHEIASKLVLEALFFKAEAPHRQRSLASEESASLNRRLIERAYKYRPVKVV 417

Query:   416 EFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGL 475
             EFELPR QCVVYLDLKREEC  LFP+GR+YSQAFHLGGQGFFLSAHCNMDQQSSFHCFGL
Sbjct:   418 EFELPRPQCVVYLDLKREECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGL 477

Query:   476 FLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMAD 535
             FLGMQEKGSVSF VDYEF+AR KP E+++SKYKGNYTFTGGKAVGYRNLFG+PWT+F+A+
Sbjct:   478 FLGMQEKGSVSFGVDYEFSARSKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAE 537

Query:   536 DSIYFINGNLHLRAELTIRQ 555
             DS YFING LHLRAELTI++
Sbjct:   538 DSQYFINGILHLRAELTIKR 557
GO:0005737 "cytoplasm" evidence=ISM
GO:0009954 "proximal/distal pattern formation" evidence=RCA
GO:0010227 "floral organ abscission" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0010114 "response to red light" evidence=IGI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0046982 "protein heterodimerization activity" evidence=IPI
TAIR|locus:2063026 LRB1 "light-response BTB 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6TDP4 KLHL17 "Kelch-like protein 17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2678948 Klhl17 "kelch-like 17" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|708444 Klhl17 "kelch-like family member 17" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A4FV78 KBTBD10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O60662 KLHL41 "Kelch-like protein 41" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PMV5 KBTBD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2661430 Kbtbd8 "kelch repeat and BTB (POZ) domain containing 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0037978 KLHL18 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O82343Y2626_ARATHNo assigned EC number0.74500.97650.9661nono
Q9FPW6POB1_ARATHNo assigned EC number0.74820.97830.9679yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-11
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 4e-10
pfam07707101 pfam07707, BACK, BTB And C-terminal Kelch 4e-09
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 5e-08
pfam00651101 pfam00651, BTB, BTB/POZ domain 5e-07
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information 
 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 148 VLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLR-IHASEEAALMELLNFMY 204
            L V  K  H    +LAA SP+F  LFS+  +ES++  + L  +          LLNF+Y
Sbjct: 3   TLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPE---DFRALLNFLY 59

Query: 205 SSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNL 242
           +  L       + ++L  AD  ++   +  C   L  L
Sbjct: 60  TGKLD-LPEENVEELLELADYLQIPGLVELCEEFLLKL 96

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 555
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA02713557 hypothetical protein; Provisional 100.0
PHA02790480 Kelch-like protein; Provisional 100.0
PHA03098534 kelch-like protein; Provisional 100.0
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.97
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.9
KOG4682488 consensus Uncharacterized conserved protein, conta 99.78
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 99.72
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.66
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 99.63
KOG4591280 consensus Uncharacterized conserved protein, conta 99.63
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.56
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.52
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.48
PHA02713 557 hypothetical protein; Provisional 99.36
PHA02790480 Kelch-like protein; Provisional 99.14
PHA03098 534 kelch-like protein; Provisional 98.88
PLN02153341 epithiospecifier protein 98.53
TIGR03547 346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.49
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.46
PF1396450 Kelch_6: Kelch motif 98.45
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.4
PLN02193470 nitrile-specifier protein 98.38
PLN02153 341 epithiospecifier protein 98.3
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 98.28
TIGR03548 323 mutarot_permut cyclically-permuted mutatrotase fam 98.23
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.18
PLN02193 470 nitrile-specifier protein 98.16
KOG0511516 consensus Ankyrin repeat protein [General function 98.14
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.08
PRK14131 376 N-acetylneuraminic acid mutarotase; Provisional 98.04
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 97.54
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 97.48
smart0061247 Kelch Kelch domain. 97.44
KOG2838401 consensus Uncharacterized conserved protein, conta 97.44
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.24
KOG2838401 consensus Uncharacterized conserved protein, conta 97.24
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.02
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 96.99
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.81
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 96.65
KOG3473112 consensus RNA polymerase II transcription elongati 96.51
KOG4693392 consensus Uncharacterized conserved protein, conta 96.33
PF1385442 Kelch_5: Kelch motif 95.97
PF1341549 Kelch_3: Galactose oxidase, central domain 95.92
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 95.71
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 95.21
KOG1665302 consensus AFH1-interacting protein FIP2, contains 94.36
smart0061247 Kelch Kelch domain. 94.3
KOG4693 392 consensus Uncharacterized conserved protein, conta 94.2
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.54
KOG1230 521 consensus Protein containing repeated kelch motifs 92.7
KOG2714465 consensus SETA binding protein SB1 and related pro 91.78
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 91.09
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 90.81
KOG1230 521 consensus Protein containing repeated kelch motifs 89.86
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 86.75
COG3055 381 Uncharacterized protein conserved in bacteria [Fun 86.32
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 86.29
PF1396450 Kelch_6: Kelch motif 85.85
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 83.91
KOG1778319 consensus CREB binding protein/P300 and related TA 83.73
PF03089337 RAG2: Recombination activating protein 2; InterPro 83.58
PF1341549 Kelch_3: Galactose oxidase, central domain 83.03
KOG0511516 consensus Ankyrin repeat protein [General function 82.95
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=7e-64  Score=550.16  Aligned_cols=376  Identities=19%  Similarity=0.285  Sum_probs=348.2

Q ss_pred             ccccccchhhccCCCCCCCCCeeEEEEE--eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHH
Q 008736          124 LNLKQCGEEATGNIDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLN  201 (555)
Q Consensus       124 ~~~~~~~l~~~l~~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~  201 (555)
                      ...|...+.+.++.++..+.+|||+|.+  ++|+|||.||||+||||++||+++++|+.++.|.|.  ++++.+++.+++
T Consensus        16 ~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~   93 (571)
T KOG4441|consen   16 DPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLD   93 (571)
T ss_pred             cHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHH
Confidence            3446677888899999999999999999  579999999999999999999999999999999998  899999999999


Q ss_pred             HHhcCccccCccchHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHH
Q 008736          202 FMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK  281 (555)
Q Consensus       202 fiYtg~l~i~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~  281 (555)
                      |+|||++.++. +||++||.+|++|||+.+++.|++||.+ +++++||+.+..+|+.|    +|.+|.+.+..||.+||.
T Consensus        94 y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~~F~  167 (571)
T KOG4441|consen   94 YAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYILQHFA  167 (571)
T ss_pred             HhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHH
Confidence            99999999999 9999999999999999999999999999 99999999999999999    999999999999999999


Q ss_pred             HhhccchhhhCCChhhhccccccccccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccCCCCCHHHHhhhccC
Q 008736          282 DISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTC  361 (555)
Q Consensus       282 ~v~~~~~efl~L~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~  361 (555)
                      ++.+ +++|++||.++|..||++|+|+|.+|.+||+++++|++||   .+.|..++ +.|+++||||+|++.+|.+.+..
T Consensus       168 ~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~  242 (571)
T KOG4441|consen  168 EVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEIVES  242 (571)
T ss_pred             HHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhh
Confidence            9999 9999999999999999999999999999999999999999   78899999 89999999999999999998887


Q ss_pred             CCCC--ChHHHHHHHHHHhhhccCcccchhhhhhcccccCcc-cccceeeecc-------cceeeecccccceeE-----
Q 008736          362 NDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYRR-FVERAYKYRP-------VKVVEFELPRQQCVV-----  426 (555)
Q Consensus       362 ~~l~--~~~~~~~l~eAl~~~~~~p~~q~~~~~~~t~~~pR~-~~~~~~~~~~-------~~~ve~ydp~~~~w~-----  426 (555)
                      .++.  .+.|+.++.+|++||. .|.+++.+++++++  ||+ ..+.+++.++       .+.+|+|||.++.|.     
T Consensus       243 ~~~~~~~~~c~~~l~ea~~~~~-~~~~~~~~~~~~t~--~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m  319 (571)
T KOG4441|consen  243 EPLIKRDSACRDLLDEAKKYHL-LPQRRPVMQSPRTR--PRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM  319 (571)
T ss_pred             hhhhccCHHHHHHHHHHHHHhh-CcccCccccCCCcc--cCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC
Confidence            7765  6899999999999999 89999989999887  473 4456666443       357999999999988     


Q ss_pred             ---------------------------------eccccccceeeccC--CCceeEEEEEECCcEEEEcccCCccccccEE
Q 008736          427 ---------------------------------YLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFH  471 (555)
Q Consensus       427 ---------------------------------~~d~~~~~W~~l~p--~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~  471 (555)
                                                       +|||..++|..++|  .+|..+++++++|.||++||++|...+.+++
T Consensus       320 ~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE  399 (571)
T KOG4441|consen  320 PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVE  399 (571)
T ss_pred             CcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEE
Confidence                                             39999999999998  9999999999999999999999999999999


Q ss_pred             EEE-----------------------------eeecccCCC-CcceeeccccceEecC---CCceecCCCCceeecccee
Q 008736          472 CFG-----------------------------LFLGMQEKG-SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKA  518 (555)
Q Consensus       472 ~y~-----------------------------~~gG~~~~~-~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~  518 (555)
                      |||                             ++||.++.. .+.++      |||||   +|+.++||+++|..+|+++
T Consensus       400 ~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sv------e~YDP~t~~W~~~~~M~~~R~~~g~a~  473 (571)
T KOG4441|consen  400 CYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSV------ECYDPETNTWTLIAPMNTRRSGFGVAV  473 (571)
T ss_pred             EecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceE------EEEcCCCCceeecCCcccccccceEEE
Confidence            998                             468887776 78885      99999   9999999999999999885


Q ss_pred             ecc
Q 008736          519 VGY  521 (555)
Q Consensus       519 ~g~  521 (555)
                      +++
T Consensus       474 ~~~  476 (571)
T KOG4441|consen  474 LNG  476 (571)
T ss_pred             ECC
Confidence            543

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 1e-28
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 5e-27
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 4e-14
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-12
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 1e-12
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 2e-12
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 3e-12
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 6e-12
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 7e-12
2vpk_A116 Myoneurin; transcription regulation, transcription 1e-11
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-11
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 4e-11
3b84_A119 Zinc finger and BTB domain-containing protein 48; 9e-11
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-10
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-10
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-09
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 4e-09
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 9e-09
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 3e-07
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 9e-05
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
 Score =  113 bits (286), Expect = 1e-28
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 160 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEE----AALMELLNFMYSSTLSTTTPTA 215
           +LAA + +F  L S    ES    V +R  +SE       +  ++ +MY+  +  +T + 
Sbjct: 53  VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSV 112

Query: 216 LLDVLMAADKFEVASCMRYCSR-LLRNL-PMTCESALLYLDLPSSVLMADA--VQPLTDT 271
             +VL  AD+F +     +C   L + L    C      + +     +A    +  L   
Sbjct: 113 -HEVLELADRFLLIRLKEFCGEFLKKKLHLSNC------VAI---HSLAHMYTLSQLALK 162

Query: 272 AKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLE 331
           A   +   +  + +  EE   LP   I   L+  ++ + SE+ +++  LKW +      E
Sbjct: 163 AADMIRRNFHKVIQ-DEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ-R--NAE 218

Query: 332 ERREILGSRLGRLIRFPYMTCRKLKKVLTCNDF 364
           ER       L +L+R   M    L + +     
Sbjct: 219 ERERYF-EELFKLLRLSQMKPTYLTRHVKPERL 250
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.94
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.94
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.9
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.87
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.86
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.86
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.86
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.86
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.85
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.84
2vpk_A116 Myoneurin; transcription regulation, transcription 99.84
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.83
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.83
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.82
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.82
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.8
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.76
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.72
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.41
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.13
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.05
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.04
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.02
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.95
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.95
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.95
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.94
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.93
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.92
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.9
2xn4_A 302 Kelch-like protein 2; structural protein, cytoskel 98.9
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.89
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.89
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.81
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.78
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 98.28
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.24
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.19
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.15
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.14
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.04
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.02
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.84
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.51
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.4
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.82
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.57
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 94.04
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 92.5
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 91.8
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 90.6
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=100.00  E-value=3.3e-45  Score=370.06  Aligned_cols=250  Identities=20%  Similarity=0.312  Sum_probs=226.3

Q ss_pred             ccccccchhhccCCCCCCCCCeeEEEEEe-----EEEeehhhccccCHHHHHhhcCCCCCCCccEEEEec----CCCCHH
Q 008736          124 LNLKQCGEEATGNIDPAWSMDLSTVLRVK-----TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRI----HASEEA  194 (555)
Q Consensus       124 ~~~~~~~l~~~l~~~~~~~~~~DV~l~v~-----~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~----~~v~~~  194 (555)
                      ...|...+...++.+++.+.+|||+|.++     +|+|||+|||++|+||++||+++|+|+.+..|+|+.    +++++.
T Consensus        12 ~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~   91 (279)
T 3i3n_A           12 CSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPD   91 (279)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHH
T ss_pred             CHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHH
Confidence            34466778888888999999999999984     599999999999999999999999999999999862    279999


Q ss_pred             HHHHHHHHHhcCccccCccchHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHH
Q 008736          195 ALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQ  274 (555)
Q Consensus       195 ~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~  274 (555)
                      +|+.+|+|+|||++.++. +++.+|+.+|++|+++.|++.|++||.+ .++++||+.++.+|..|    ++..|.+.|.+
T Consensus        92 ~f~~ll~~~Ytg~~~i~~-~~v~~ll~~A~~l~i~~L~~~c~~~L~~-~l~~~n~~~i~~~A~~~----~~~~L~~~~~~  165 (279)
T 3i3n_A           92 TVEAVIEYMYTGRIRVST-GSVHEVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHMY----TLSQLALKAAD  165 (279)
T ss_dssp             HHHHHHHHHHHSEEEEET-TTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCTTTHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred             HHHHHHHhhCcCCcccCH-HHHHHHHHHHHHHCcHHHHHHHHHHHHH-cCCcchHHHHHHHHHHc----CcHHHHHHHHH
Confidence            999999999999999998 8999999999999999999999999999 89999999999999999    89999999999


Q ss_pred             HHHHhHHHhhccchhhhCCChhhhccccccccccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccCCCCCHHH
Q 008736          275 FLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRK  354 (555)
Q Consensus       275 fi~~nf~~v~~~~~efl~L~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~  354 (555)
                      ||.+||.++.+ +++|.+||.+.+..||++|+|+|.+|.+||+++++|++|+   +++|.+++ ++||++||||+|++++
T Consensus       166 ~i~~~f~~v~~-~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~---~~~r~~~~-~~ll~~VRf~l~~~~~  240 (279)
T 3i3n_A          166 MIRRNFHKVIQ-DEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN---AEERERYF-EELFKLLRLSQMKPTY  240 (279)
T ss_dssp             HHHHTHHHHTT-SSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTT---HHHHTTTH-HHHHTTSCGGGSCHHH
T ss_pred             HHHHHHHHHhc-CcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcC---HHHHHHHH-HHHHHhcCCCCCCHHH
Confidence            99999999999 9999999999999999999999999999999999999998   88999998 8999999999999999


Q ss_pred             HhhhccCCCCC--ChHHHHHHHHHHhhhccCcc
Q 008736          355 LKKVLTCNDFD--PELASKVVLESLFFKAETPY  385 (555)
Q Consensus       355 L~~~~~~~~l~--~~~~~~~l~eAl~~~~~~p~  385 (555)
                      |.+.+..+++.  ++.|++++.+|++||. .|.
T Consensus       241 L~~~v~~~~l~~~~~~c~~~l~ea~~~~~-~~~  272 (279)
T 3i3n_A          241 LTRHVKPERLVANNEVCVKLVADAVERHA-LRA  272 (279)
T ss_dssp             HHHTTTTSHHHHTCHHHHHHHHHHHHHHH-HTT
T ss_pred             HHHHhhccchhcCCHHHHHHHHHHHHhcc-Cch
Confidence            99988877764  6899999999999998 443
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 555
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 2e-06
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 6e-05
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 148 VLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYS 205
           V+ V  +       +L A S  FY +F++ ++ +                   LL+FMY+
Sbjct: 29  VIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL--DPEINPEGFNILLDFMYT 86

Query: 206 STLSTTTPTALLDVLMAADKFEVASCMRYCSRLLR 240
           S L       ++ V+  A   ++   +  C + ++
Sbjct: 87  SRL-NLREGNIMAVMATAMYLQMEHVVDTCRKFIK 120
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.87
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.86
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.55
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.43
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.09
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.1
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.1
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 96.58
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.48
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.22
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.02
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 89.69
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 86.54
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.2e-23  Score=180.75  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=105.2

Q ss_pred             ccccccchhhccCCCCCCCCCeeEEEEE--eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHH
Q 008736          124 LNLKQCGEEATGNIDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLN  201 (555)
Q Consensus       124 ~~~~~~~l~~~l~~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~  201 (555)
                      .+-|+..+...|+.+++.+.+|||+|.+  ++|+|||+|||++|+||++||.+++.|+.+..+.++  ++++++|+.+|+
T Consensus         5 ~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~--~v~~~~f~~ll~   82 (122)
T d1r29a_           5 FTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP--EINPEGFNILLD   82 (122)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT--TSCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeec--ccCHHHHHHHHh
Confidence            3446777888888889999999999999  579999999999999999999999998887666555  899999999999


Q ss_pred             HHhcCccccCccchHHHHHHHhcccchhhhHHHHHHHHhc
Q 008736          202 FMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRN  241 (555)
Q Consensus       202 fiYtg~l~i~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~  241 (555)
                      |+|||++.++. +++.+++.+|++|+++.|++.|.+||++
T Consensus        83 ~~Ytg~~~i~~-~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          83 FMYTSRLNLRE-GNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhcCCeecCch-hhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            99999999998 8999999999999999999999999975
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure